Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007744.01.T01 | MCH94086.1 | 85.646 | 209 | 28 | 1 | 1 | 207 | 70 | 278 | 4.75E-124 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007744.01.T01 | Q9FKU8 | 77.095 | 179 | 41 | 0 | 1 | 179 | 77 | 255 | 8.12E-100 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007744.01.T01 | A0A392N2P3 | 85.646 | 209 | 28 | 1 | 1 | 207 | 70 | 278 | 2.27e-124 | 366 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0280007744.01 | MsG0480018185.01 | 0.834805 | 2.423015e-56 | 2.906971e-53 |
| MsG0280007744.01 | MsG0480023195.01 | 0.800648 | 1.306207e-48 | 6.114556e-46 |
| MsG0280007744.01 | MsG0780039917.01 | 0.818025 | 2.431426e-52 | 1.799345e-49 |
| MsG0280007744.01 | MsG0780039918.01 | 0.804478 | 2.119207e-49 | 1.093763e-46 |
| MsG0280007744.01 | MsG0780039924.01 | 0.828057 | 1.110846e-54 | 1.091985e-51 |
| MsG0280007744.01 | MsG0880045804.01 | 0.806495 | 7.999619e-50 | 4.348316e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007744.01.T01 | MTR_2g031390 | 89.474 | 209 | 20 | 1 | 1 | 207 | 70 | 278 | 1.44e-127 | 372 |
| MsG0280007744.01.T01 | MTR_2g031390 | 88.235 | 34 | 4 | 0 | 188 | 221 | 509 | 542 | 1.26e-12 | 67.4 |
| MsG0280007744.01.T01 | MTR_4g094518 | 83.051 | 177 | 30 | 0 | 1 | 177 | 71 | 247 | 8.64e-101 | 303 |
| MsG0280007744.01.T01 | MTR_4g094520 | 72.727 | 209 | 54 | 1 | 1 | 206 | 74 | 282 | 2.86e-96 | 291 |
| MsG0280007744.01.T01 | MTR_2g031560 | 50.435 | 230 | 105 | 3 | 5 | 227 | 69 | 296 | 1.11e-78 | 247 |
| MsG0280007744.01.T01 | MTR_4g094498 | 60.733 | 191 | 73 | 1 | 4 | 194 | 82 | 270 | 1.38e-72 | 231 |
| MsG0280007744.01.T01 | MTR_2g031590 | 58.511 | 188 | 76 | 1 | 7 | 194 | 76 | 261 | 3.69e-72 | 229 |
| MsG0280007744.01.T01 | MTR_2g031510 | 60.733 | 191 | 73 | 1 | 4 | 194 | 82 | 270 | 2.73e-71 | 228 |
| MsG0280007744.01.T01 | MTR_2g031490 | 58.115 | 191 | 78 | 1 | 4 | 194 | 80 | 268 | 9.18e-70 | 223 |
| MsG0280007744.01.T01 | MTR_2g031420 | 60.215 | 186 | 72 | 1 | 4 | 189 | 76 | 259 | 1.32e-69 | 223 |
| MsG0280007744.01.T01 | MTR_4g094515 | 61.257 | 191 | 72 | 1 | 4 | 194 | 83 | 271 | 2.19e-69 | 231 |
| MsG0280007744.01.T01 | MTR_4g094515 | 55.072 | 207 | 88 | 2 | 3 | 206 | 694 | 898 | 5.46e-68 | 227 |
| MsG0280007744.01.T01 | MTR_4g094492 | 58.791 | 182 | 73 | 1 | 5 | 186 | 77 | 256 | 3.16e-69 | 222 |
| MsG0280007744.01.T01 | MTR_2g031460 | 56.701 | 194 | 82 | 1 | 1 | 194 | 73 | 264 | 3.19e-69 | 222 |
| MsG0280007744.01.T01 | MTR_3g009760 | 58.031 | 193 | 79 | 1 | 2 | 194 | 68 | 258 | 5.26e-69 | 221 |
| MsG0280007744.01.T01 | MTR_3g009880 | 57.513 | 193 | 80 | 1 | 2 | 194 | 66 | 256 | 1.59e-68 | 220 |
| MsG0280007744.01.T01 | MTR_4g091150 | 58.639 | 191 | 77 | 1 | 4 | 194 | 82 | 270 | 1.63e-68 | 220 |
| MsG0280007744.01.T01 | MTR_4g094488 | 57.692 | 182 | 75 | 1 | 5 | 186 | 77 | 256 | 5.13e-68 | 219 |
| MsG0280007744.01.T01 | MTR_3g009820 | 58.639 | 191 | 77 | 1 | 4 | 194 | 70 | 258 | 8.22e-68 | 218 |
| MsG0280007744.01.T01 | MTR_4g094418 | 59.509 | 163 | 64 | 1 | 32 | 194 | 1 | 161 | 1.60e-67 | 219 |
| MsG0280007744.01.T01 | MTR_4g091190 | 55.497 | 191 | 83 | 1 | 4 | 194 | 74 | 262 | 8.05e-67 | 216 |
| MsG0280007744.01.T01 | MTR_4g094495 | 57.143 | 182 | 76 | 1 | 5 | 186 | 80 | 259 | 1.34e-66 | 215 |
| MsG0280007744.01.T01 | MTR_4g057990 | 55.385 | 195 | 84 | 2 | 4 | 198 | 69 | 260 | 2.40e-66 | 214 |
| MsG0280007744.01.T01 | MTR_4g091200 | 54.737 | 190 | 84 | 1 | 4 | 193 | 70 | 257 | 4.65e-66 | 213 |
| MsG0280007744.01.T01 | MTR_2g031600 | 58.824 | 170 | 68 | 1 | 7 | 176 | 77 | 244 | 4.85e-66 | 210 |
| MsG0280007744.01.T01 | MTR_4g091170 | 49.754 | 203 | 98 | 2 | 7 | 207 | 107 | 307 | 1.83e-65 | 213 |
| MsG0280007744.01.T01 | MTR_4g094480 | 52.880 | 191 | 88 | 1 | 4 | 194 | 76 | 264 | 1.34e-64 | 210 |
| MsG0280007744.01.T01 | MTR_6g017205 | 54.737 | 190 | 84 | 1 | 4 | 193 | 70 | 257 | 1.45e-64 | 210 |
| MsG0280007744.01.T01 | MTR_4g094478 | 56.284 | 183 | 78 | 1 | 4 | 186 | 76 | 256 | 1.59e-64 | 210 |
| MsG0280007744.01.T01 | MTR_2g023590 | 53.403 | 191 | 87 | 1 | 4 | 194 | 12 | 200 | 2.07e-64 | 208 |
| MsG0280007744.01.T01 | MTR_4g088355 | 53.403 | 191 | 87 | 1 | 4 | 194 | 77 | 265 | 3.89e-64 | 209 |
| MsG0280007744.01.T01 | MTR_1g076830 | 51.913 | 183 | 88 | 0 | 3 | 185 | 76 | 258 | 1.32e-48 | 168 |
| MsG0280007744.01.T01 | MTR_2g084370 | 44.144 | 111 | 40 | 1 | 58 | 168 | 1 | 89 | 1.13e-26 | 99.8 |
| MsG0280007744.01.T01 | MTR_2g084405 | 48.913 | 92 | 42 | 1 | 58 | 149 | 1 | 87 | 4.13e-22 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007744.01.T01 | AT5G44400 | 77.095 | 179 | 41 | 0 | 1 | 179 | 77 | 255 | 8.28e-101 | 303 |
| MsG0280007744.01.T01 | AT2G34790 | 76.243 | 181 | 43 | 0 | 1 | 181 | 75 | 255 | 2.10e-96 | 292 |
| MsG0280007744.01.T01 | AT1G30760 | 76.882 | 186 | 43 | 0 | 1 | 186 | 95 | 280 | 4.45e-93 | 284 |
| MsG0280007744.01.T01 | AT1G30760 | 76.882 | 186 | 43 | 0 | 1 | 186 | 77 | 262 | 4.75e-93 | 283 |
| MsG0280007744.01.T01 | AT5G44390 | 69.000 | 200 | 62 | 0 | 1 | 200 | 79 | 278 | 1.76e-92 | 282 |
| MsG0280007744.01.T01 | AT5G44380 | 70.391 | 179 | 53 | 0 | 1 | 179 | 80 | 258 | 2.94e-83 | 258 |
| MsG0280007744.01.T01 | AT5G44380 | 70.391 | 179 | 53 | 0 | 1 | 179 | 120 | 298 | 3.00e-83 | 259 |
| MsG0280007744.01.T01 | AT4G20840 | 65.969 | 191 | 63 | 1 | 4 | 194 | 82 | 270 | 1.40e-78 | 246 |
| MsG0280007744.01.T01 | AT1G11770 | 59.358 | 187 | 74 | 1 | 4 | 190 | 76 | 260 | 2.06e-69 | 223 |
| MsG0280007744.01.T01 | AT4G20820 | 55.051 | 198 | 86 | 2 | 3 | 200 | 79 | 273 | 1.59e-67 | 218 |
| MsG0280007744.01.T01 | AT1G30710 | 58.065 | 186 | 75 | 2 | 7 | 191 | 80 | 263 | 9.27e-67 | 215 |
| MsG0280007744.01.T01 | AT1G30740 | 60.622 | 193 | 72 | 2 | 4 | 194 | 76 | 266 | 5.42e-66 | 213 |
| MsG0280007744.01.T01 | AT1G30740 | 60.622 | 193 | 72 | 2 | 4 | 194 | 73 | 263 | 6.63e-66 | 213 |
| MsG0280007744.01.T01 | AT5G44360 | 58.470 | 183 | 74 | 2 | 4 | 185 | 80 | 261 | 6.99e-66 | 213 |
| MsG0280007744.01.T01 | AT5G44360 | 58.470 | 183 | 74 | 2 | 4 | 185 | 96 | 277 | 8.17e-66 | 213 |
| MsG0280007744.01.T01 | AT4G20860 | 57.542 | 179 | 74 | 1 | 7 | 185 | 80 | 256 | 1.02e-64 | 210 |
| MsG0280007744.01.T01 | AT4G20830 | 62.304 | 191 | 70 | 1 | 4 | 194 | 83 | 271 | 1.29e-64 | 210 |
| MsG0280007744.01.T01 | AT1G34575 | 55.376 | 186 | 80 | 2 | 7 | 191 | 77 | 260 | 1.48e-64 | 209 |
| MsG0280007744.01.T01 | AT4G20830 | 62.304 | 191 | 70 | 1 | 4 | 194 | 83 | 271 | 3.53e-64 | 209 |
| MsG0280007744.01.T01 | AT1G30730 | 56.757 | 185 | 77 | 2 | 3 | 186 | 71 | 253 | 5.45e-64 | 208 |
| MsG0280007744.01.T01 | AT5G44410 | 55.249 | 181 | 80 | 1 | 1 | 181 | 75 | 254 | 7.04e-62 | 202 |
| MsG0280007744.01.T01 | AT1G30720 | 54.787 | 188 | 82 | 2 | 3 | 189 | 72 | 257 | 8.06e-62 | 202 |
| MsG0280007744.01.T01 | AT1G26380 | 55.932 | 177 | 76 | 1 | 18 | 194 | 87 | 261 | 3.30e-61 | 201 |
| MsG0280007744.01.T01 | AT5G44440 | 50.761 | 197 | 96 | 1 | 2 | 198 | 72 | 267 | 5.86e-61 | 200 |
| MsG0280007744.01.T01 | AT1G30700 | 52.153 | 209 | 97 | 1 | 4 | 209 | 71 | 279 | 9.71e-61 | 199 |
| MsG0280007744.01.T01 | AT5G44440 | 50.761 | 197 | 96 | 1 | 2 | 198 | 142 | 337 | 1.33e-60 | 201 |
| MsG0280007744.01.T01 | AT1G26400 | 55.367 | 177 | 77 | 1 | 18 | 194 | 87 | 261 | 2.31e-60 | 199 |
| MsG0280007744.01.T01 | AT1G01980 | 55.729 | 192 | 78 | 3 | 4 | 190 | 76 | 265 | 1.43e-58 | 194 |
| MsG0280007744.01.T01 | AT1G26420 | 54.802 | 177 | 78 | 1 | 18 | 194 | 87 | 261 | 1.56e-58 | 194 |
| MsG0280007744.01.T01 | AT1G26390 | 56.497 | 177 | 75 | 1 | 18 | 194 | 87 | 261 | 2.35e-57 | 191 |
| MsG0280007744.01.T01 | AT2G34810 | 51.309 | 191 | 90 | 2 | 4 | 193 | 79 | 267 | 2.60e-57 | 191 |
| MsG0280007744.01.T01 | AT1G26410 | 52.542 | 177 | 81 | 2 | 18 | 194 | 111 | 284 | 1.87e-56 | 189 |
| MsG0280007744.01.T01 | AT4G20800 | 53.371 | 178 | 81 | 1 | 17 | 194 | 85 | 260 | 3.98e-55 | 185 |
Find 51 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTCTTGATAGAAAATCTA+TGG | 0.264794 | 2:-19904966 | MsG0280007744.01.T01:CDS |
| GTGAATATAAATTCAGGTTT+TGG | 0.276315 | 2:+19905382 | None:intergenic |
| GCTGGTCTTTGCACAAGTTT+AGG | 0.303745 | 2:-19905094 | MsG0280007744.01.T01:CDS |
| GGTGGTGGAGGTGGAAGTTT+TGG | 0.306896 | 2:-19904917 | MsG0280007744.01.T01:CDS |
| CTATCGGCGAAGTGTATTAT+AGG | 0.306957 | 2:-19905150 | MsG0280007744.01.T01:CDS |
| AATATTTACATCGCGAAGTT+TGG | 0.311836 | 2:+19905213 | None:intergenic |
| GAATGCAAGAGATGGGAATA+AGG | 0.365850 | 2:-19904001 | MsG0280007744.01.T01:CDS |
| TAAATTTCATGCAGGTTGTT+TGG | 0.367255 | 2:-19903945 | MsG0280007744.01.T01:CDS |
| TTTAGTTGCATAGTTGAAAC+TGG | 0.369940 | 2:+19904030 | None:intergenic |
| AAGGGTGTGAATATAAATTC+AGG | 0.373832 | 2:+19905376 | None:intergenic |
| TTGGACATGTGAATCGGTTA+AGG | 0.375346 | 2:+19905357 | None:intergenic |
| GGATCCATGATGAGAAAATA+TGG | 0.381854 | 2:-19905040 | MsG0280007744.01.T01:CDS |
| GGTGTTGGTGGACACATAAC+AGG | 0.389612 | 2:-19905073 | MsG0280007744.01.T01:CDS |
| CATGAGAAAAGTGATGTTCA+TGG | 0.393952 | 2:-19905124 | MsG0280007744.01.T01:CDS |
| GATTTGCCAAAGTTTCTTGT+TGG | 0.402611 | 2:-19903974 | MsG0280007744.01.T01:CDS |
| GATGTTCATGGTTTCCCTGC+TGG | 0.402996 | 2:-19905112 | MsG0280007744.01.T01:CDS |
| GCTATTAGAGGTGGTGGAGG+TGG | 0.420433 | 2:-19904926 | MsG0280007744.01.T01:CDS |
| TTGAACAAGTAACAGCTACT+TGG | 0.425622 | 2:+19905338 | None:intergenic |
| CACATAACAGGAGGTGCATA+TGG | 0.426699 | 2:-19905061 | MsG0280007744.01.T01:CDS |
| TAATTACCAACAAGAAACTT+TGG | 0.431197 | 2:+19903968 | None:intergenic |
| TGGATCCTGAAAATGTGTTC+AGG | 0.457657 | 2:-19904077 | MsG0280007744.01.T01:CDS |
| TGGGCTATTAGAGGTGGTGG+AGG | 0.463852 | 2:-19904929 | MsG0280007744.01.T01:CDS |
| TGGACATGTGAATCGGTTAA+GGG | 0.464063 | 2:+19905358 | None:intergenic |
| ATGATGAGAAAATATGGTCT+TGG | 0.474676 | 2:-19905034 | MsG0280007744.01.T01:CDS |
| GGTAATTATAAATTTCATGC+AGG | 0.491761 | 2:-19903953 | MsG0280007744.01.T01:CDS |
| GTTACTTGTTCAAAGAAACT+TGG | 0.495838 | 2:-19905328 | MsG0280007744.01.T01:CDS |
| AAACTTGTGCAAAGACCAGC+AGG | 0.496208 | 2:+19905097 | None:intergenic |
| GCGAAAATAGTTGACGCAAA+CGG | 0.496323 | 2:-19904992 | MsG0280007744.01.T01:CDS |
| TGCACAAGTTTAGGTGTTGG+TGG | 0.501953 | 2:-19905085 | MsG0280007744.01.T01:CDS |
| ATTCTTGATAGAAAATCTAT+GGG | 0.512123 | 2:-19904965 | MsG0280007744.01.T01:CDS |
| AAAGACAAGAATGCAAGAGA+TGG | 0.521178 | 2:-19904009 | MsG0280007744.01.T01:CDS |
| AGCTACTTGGACATGTGAAT+CGG | 0.521216 | 2:+19905351 | None:intergenic |
| ACGAGAGTCCTTCATAATCA+TGG | 0.524388 | 2:+19905278 | None:intergenic |
| CTTTGCACAAGTTTAGGTGT+TGG | 0.529715 | 2:-19905088 | MsG0280007744.01.T01:CDS |
| ATATCGAAGATAATAGCGCT+TGG | 0.537173 | 2:-19905189 | MsG0280007744.01.T01:CDS |
| TGGTGAAATTAAGACTAAAG+TGG | 0.553629 | 2:-19904097 | MsG0280007744.01.T01:CDS |
| AAGACAAGAATGCAAGAGAT+GGG | 0.557768 | 2:-19904008 | MsG0280007744.01.T01:CDS |
| ATTCAAGCCGGTGCTACTAT+CGG | 0.565892 | 2:-19905166 | MsG0280007744.01.T01:CDS |
| CACTTCGCCGATAGTAGCAC+CGG | 0.580226 | 2:+19905159 | None:intergenic |
| TTACATCGCGAAGTTTGGCT+AGG | 0.581305 | 2:+19905218 | None:intergenic |
| CATCTAAGAGTTAGAAGTGG+TGG | 0.586392 | 2:-19905301 | MsG0280007744.01.T01:CDS |
| AGTGGTGGCCATGATTATGA+AGG | 0.592283 | 2:-19905286 | MsG0280007744.01.T01:CDS |
| GCTAGGTCGACGATTATGAA+AGG | 0.615520 | 2:+19905235 | None:intergenic |
| TGCATAGTTGAAACTGGAAG+TGG | 0.634647 | 2:+19904036 | None:intergenic |
| AATAGCGCTTGGATTCAAGC+CGG | 0.660237 | 2:-19905178 | MsG0280007744.01.T01:CDS |
| ATTCATCTAAGAGTTAGAAG+TGG | 0.668072 | 2:-19905304 | MsG0280007744.01.T01:CDS |
| TTCTTGATAGAAAATCTATG+GGG | 0.690602 | 2:-19904964 | MsG0280007744.01.T01:CDS |
| ATAGTTGAAACTGGAAGTGG+TGG | 0.697983 | 2:+19904039 | None:intergenic |
| TCTTGATAGAAAATCTATGG+GGG | 0.706423 | 2:-19904963 | MsG0280007744.01.T01:CDS |
| GTTGGTGGACACATAACAGG+AGG | 0.719255 | 2:-19905070 | MsG0280007744.01.T01:CDS |
| AACTTGTGCAAAGACCAGCA+GGG | 0.736490 | 2:+19905098 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCAAAGATAATTTCAAT+AGG | - | Chr2:19905212-19905231 | MsG0280007744.01.T01:CDS | 15.0% |
| !! | AAATTCAGTATTTAACTCTT+TGG | - | Chr2:19905010-19905029 | MsG0280007744.01.T01:CDS | 20.0% |
| !! | ATTCTTGATAGAAAATCTAT+GGG | - | Chr2:19904368-19904387 | MsG0280007744.01.T01:intron | 20.0% |
| !! | TATTCTTGATAGAAAATCTA+TGG | - | Chr2:19904367-19904386 | MsG0280007744.01.T01:intron | 20.0% |
| ! | AAAGAGATTTCATCAATAGT+TGG | + | Chr2:19904561-19904580 | None:intergenic | 25.0% |
| ! | AACTATAGAGATCTTGATTT+GGG | - | Chr2:19905134-19905153 | MsG0280007744.01.T01:CDS | 25.0% |
| ! | CAAAGATAATTTCAATAGGT+TGG | - | Chr2:19905216-19905235 | MsG0280007744.01.T01:CDS | 25.0% |
| ! | GGTAATTATAAATTTCATGC+AGG | - | Chr2:19905380-19905399 | MsG0280007744.01.T01:CDS | 25.0% |
| ! | TAATTACCAACAAGAAACTT+TGG | + | Chr2:19905368-19905387 | None:intergenic | 25.0% |
| ! | TATTTAACTCTTTGGCAATA+TGG | - | Chr2:19905018-19905037 | MsG0280007744.01.T01:CDS | 25.0% |
| ! | TTCTTGATAGAAAATCTATG+GGG | - | Chr2:19904369-19904388 | MsG0280007744.01.T01:intron | 25.0% |
| !!! | GTGAATATAAATTCAGGTTT+TGG | + | Chr2:19903954-19903973 | None:intergenic | 25.0% |
| AAAGGTAAAAAAAACCGTCA+CGG | + | Chr2:19904486-19904505 | None:intergenic | 30.0% | |
| AACTTTCCTTCATAACTTGA+AGG | + | Chr2:19904683-19904702 | None:intergenic | 30.0% | |
| AATATTTACATCGCGAAGTT+TGG | + | Chr2:19904123-19904142 | None:intergenic | 30.0% | |
| ATGATGAGAAAATATGGTCT+TGG | - | Chr2:19904299-19904318 | MsG0280007744.01.T01:intron | 30.0% | |
| ATTCATCTAAGAGTTAGAAG+TGG | - | Chr2:19904029-19904048 | MsG0280007744.01.T01:CDS | 30.0% | |
| GAACTATAGAGATCTTGATT+TGG | - | Chr2:19905133-19905152 | MsG0280007744.01.T01:CDS | 30.0% | |
| GTTACTTGTTCAAAGAAACT+TGG | - | Chr2:19904005-19904024 | MsG0280007744.01.T01:CDS | 30.0% | |
| TAAATTTCATGCAGGTTGTT+TGG | - | Chr2:19905388-19905407 | MsG0280007744.01.T01:CDS | 30.0% | |
| TATGGATTCCAAATCATCAA+AGG | + | Chr2:19904925-19904944 | None:intergenic | 30.0% | |
| TCTTGATAGAAAATCTATGG+GGG | - | Chr2:19904370-19904389 | MsG0280007744.01.T01:intron | 30.0% | |
| TGGTGAAATTAAGACTAAAG+TGG | - | Chr2:19905236-19905255 | MsG0280007744.01.T01:CDS | 30.0% | |
| TGTTTAGTCAAACCTAATTC+AGG | + | Chr2:19904708-19904727 | None:intergenic | 30.0% | |
| TTTAGTTGCATAGTTGAAAC+TGG | + | Chr2:19905306-19905325 | None:intergenic | 30.0% | |
| TTTGACTAAACAAGATTGCA+TGG | - | Chr2:19904716-19904735 | MsG0280007744.01.T01:intron | 30.0% | |
| ! | AAGACCATATTTTCTCATCA+TGG | + | Chr2:19904300-19904319 | None:intergenic | 30.0% |
| ! | AAGATAGTCCTTTGATGATT+TGG | - | Chr2:19904914-19904933 | MsG0280007744.01.T01:CDS | 30.0% |
| ! | AAGGAAAGTTTTCCTGAATT+AGG | - | Chr2:19904693-19904712 | MsG0280007744.01.T01:intron | 30.0% |
| ! | AAGGGTGTGAATATAAATTC+AGG | + | Chr2:19903960-19903979 | None:intergenic | 30.0% |
| ! | CTTTTCTAAGCTTTTGGTAA+AGG | + | Chr2:19904504-19904523 | None:intergenic | 30.0% |
| ! | GTTCCATTTTATGAGGAAAA+GGG | + | Chr2:19904982-19905001 | None:intergenic | 30.0% |
| ! | TATCCCTTTTCCTCATAAAA+TGG | - | Chr2:19904976-19904995 | MsG0280007744.01.T01:CDS | 30.0% |
| ! | TGTTCCATTTTATGAGGAAA+AGG | + | Chr2:19904983-19905002 | None:intergenic | 30.0% |
| ! | TTGATGATTTGGAATCCATA+TGG | - | Chr2:19904925-19904944 | MsG0280007744.01.T01:CDS | 30.0% |
| ! | TTGCATCTTTTCTAAGCTTT+TGG | + | Chr2:19904510-19904529 | None:intergenic | 30.0% |
| !! | GAAGTTTTGGTATTCTTCTT+TGG | - | Chr2:19904429-19904448 | MsG0280007744.01.T01:intron | 30.0% |
| !! | GTAAAGTGTTCCATTTTATG+AGG | + | Chr2:19904989-19905008 | None:intergenic | 30.0% |
| AAAGACAAGAATGCAAGAGA+TGG | - | Chr2:19905324-19905343 | MsG0280007744.01.T01:CDS | 35.0% | |
| AAGACAAGAATGCAAGAGAT+GGG | - | Chr2:19905325-19905344 | MsG0280007744.01.T01:CDS | 35.0% | |
| ATATCGAAGATAATAGCGCT+TGG | - | Chr2:19904144-19904163 | MsG0280007744.01.T01:intron | 35.0% | |
| CATGAGAAAAGTGATGTTCA+TGG | - | Chr2:19904209-19904228 | MsG0280007744.01.T01:intron | 35.0% | |
| CTTATGTGTCTAAGTTCCAA+GGG | - | Chr2:19905100-19905119 | MsG0280007744.01.T01:CDS | 35.0% | |
| CTTGGAACTTAGACACATAA+GGG | + | Chr2:19905101-19905120 | None:intergenic | 35.0% | |
| CTTTATACAAGCACTTCTTG+GGG | - | Chr2:19905181-19905200 | MsG0280007744.01.T01:CDS | 35.0% | |
| GATTTGCCAAAGTTTCTTGT+TGG | - | Chr2:19905359-19905378 | MsG0280007744.01.T01:CDS | 35.0% | |
| GCTTTATACAAGCACTTCTT+GGG | - | Chr2:19905180-19905199 | MsG0280007744.01.T01:CDS | 35.0% | |
| GGATCCATGATGAGAAAATA+TGG | - | Chr2:19904293-19904312 | MsG0280007744.01.T01:intron | 35.0% | |
| TCTTACAATGCTCAATTCCT+AGG | - | Chr2:19904643-19904662 | MsG0280007744.01.T01:intron | 35.0% | |
| TTGAACAAGTAACAGCTACT+TGG | + | Chr2:19903998-19904017 | None:intergenic | 35.0% | |
| TTGGAACTTAGACACATAAG+GGG | + | Chr2:19905100-19905119 | None:intergenic | 35.0% | |
| TTTCCTTCAAGCAAAACTTC+AGG | + | Chr2:19904798-19904817 | None:intergenic | 35.0% | |
| ! | AAAAAAACCGTCACGGTTTT+TGG | + | Chr2:19904479-19904498 | None:intergenic | 35.0% |
| ! | AGCTTTATACAAGCACTTCT+TGG | - | Chr2:19905179-19905198 | MsG0280007744.01.T01:CDS | 35.0% |
| ! | GAAACTCCTTCAAGTTATGA+AGG | - | Chr2:19904674-19904693 | MsG0280007744.01.T01:intron | 35.0% |
| ! | GAATTCTTTTGGGCTATTAG+AGG | - | Chr2:19904395-19904414 | MsG0280007744.01.T01:intron | 35.0% |
| !! | GTTTTGGTATTCTTCTTTGG+TGG | - | Chr2:19904432-19904451 | MsG0280007744.01.T01:intron | 35.0% |
| AACAACCTTTGCCATATCCT+TGG | + | Chr2:19904889-19904908 | None:intergenic | 40.0% | |
| AAGATTGCATGGAAACTAGC+TGG | - | Chr2:19904727-19904746 | MsG0280007744.01.T01:intron | 40.0% | |
| AAGGATATGGCAAAGGTTGT+TGG | - | Chr2:19904888-19904907 | MsG0280007744.01.T01:CDS | 40.0% | |
| AATTGTTCATCCGCACCATA+TGG | + | Chr2:19904943-19904962 | None:intergenic | 40.0% | |
| ACGAGAGTCCTTCATAATCA+TGG | + | Chr2:19904058-19904077 | None:intergenic | 40.0% | |
| ACTTCAGGTGGTGTATCATT+TGG | + | Chr2:19904783-19904802 | None:intergenic | 40.0% | |
| AGCTACTTGGACATGTGAAT+CGG | + | Chr2:19903985-19904004 | None:intergenic | 40.0% | |
| AGGCATCAAAGCATGTTGAT+TGG | - | Chr2:19905049-19905068 | MsG0280007744.01.T01:CDS | 40.0% | |
| ATAGTTGAAACTGGAAGTGG+TGG | + | Chr2:19905297-19905316 | None:intergenic | 40.0% | |
| CATCTAAGAGTTAGAAGTGG+TGG | - | Chr2:19904032-19904051 | MsG0280007744.01.T01:CDS | 40.0% | |
| CCTTATGTGTCTAAGTTCCA+AGG | - | Chr2:19905099-19905118 | MsG0280007744.01.T01:CDS | 40.0% | |
| CCTTGGAACTTAGACACATA+AGG | + | Chr2:19905102-19905121 | None:intergenic | 40.0% | |
| CTATCGGCGAAGTGTATTAT+AGG | - | Chr2:19904183-19904202 | MsG0280007744.01.T01:intron | 40.0% | |
| CTTTGCACAAGTTTAGGTGT+TGG | - | Chr2:19904245-19904264 | MsG0280007744.01.T01:intron | 40.0% | |
| GAATGCAAGAGATGGGAATA+AGG | - | Chr2:19905332-19905351 | MsG0280007744.01.T01:CDS | 40.0% | |
| GCGAAAATAGTTGACGCAAA+CGG | - | Chr2:19904341-19904360 | MsG0280007744.01.T01:intron | 40.0% | |
| TAGTTCACATATGCTTCCCT+TGG | + | Chr2:19905119-19905138 | None:intergenic | 40.0% | |
| TGATAGAAAATCTATGGGGG+AGG | - | Chr2:19904373-19904392 | MsG0280007744.01.T01:intron | 40.0% | |
| TGCATAGTTGAAACTGGAAG+TGG | + | Chr2:19905300-19905319 | None:intergenic | 40.0% | |
| TGCTCAATTCCTAGGTGATT+CGG | - | Chr2:19904651-19904670 | MsG0280007744.01.T01:intron | 40.0% | |
| TGGACATGTGAATCGGTTAA+GGG | + | Chr2:19903978-19903997 | None:intergenic | 40.0% | |
| TGGATCCTGAAAATGTGTTC+AGG | - | Chr2:19905256-19905275 | MsG0280007744.01.T01:CDS | 40.0% | |
| TTGGACATGTGAATCGGTTA+AGG | + | Chr2:19903979-19903998 | None:intergenic | 40.0% | |
| TTGGCAATATGGAGACAAGA+AGG | - | Chr2:19905029-19905048 | MsG0280007744.01.T01:CDS | 40.0% | |
| TTTGCCATATCCTTGGAAAC+CGG | + | Chr2:19904882-19904901 | None:intergenic | 40.0% | |
| ! | CAAAGCATGTTGATTGGATC+AGG | - | Chr2:19905055-19905074 | MsG0280007744.01.T01:CDS | 40.0% |
| ! | GATTTGGAATCCATATGGTG+CGG | - | Chr2:19904930-19904949 | MsG0280007744.01.T01:CDS | 40.0% |
| ! | GGTGCGGATGAACAATTTTT+CGG | - | Chr2:19904946-19904965 | MsG0280007744.01.T01:CDS | 40.0% |
| ! | TATGGGGGAGGAATTCTTTT+GGG | - | Chr2:19904385-19904404 | MsG0280007744.01.T01:intron | 40.0% |
| ! | TCATGCCTGAACACATTTTC+AGG | + | Chr2:19905264-19905283 | None:intergenic | 40.0% |
| ! | TTCTTTTGGGCTATTAGAGG+TGG | - | Chr2:19904398-19904417 | MsG0280007744.01.T01:intron | 40.0% |
| !!! | AATTCAGGTTTTGGAGCTGA+AGG | + | Chr2:19903945-19903964 | None:intergenic | 40.0% |
| AAACTTGTGCAAAGACCAGC+AGG | + | Chr2:19904239-19904258 | None:intergenic | 45.0% | |
| AACTTGTGCAAAGACCAGCA+GGG | + | Chr2:19904238-19904257 | None:intergenic | 45.0% | |
| AATAGCGCTTGGATTCAAGC+CGG | - | Chr2:19904155-19904174 | MsG0280007744.01.T01:intron | 45.0% | |
| AGTGGTGGCCATGATTATGA+AGG | - | Chr2:19904047-19904066 | MsG0280007744.01.T01:CDS | 45.0% | |
| CCTTCAAGCAAAACTTCAGG+TGG | + | Chr2:19904795-19904814 | None:intergenic | 45.0% | |
| GCTAGGTCGACGATTATGAA+AGG | + | Chr2:19904101-19904120 | None:intergenic | 45.0% | |
| GCTCAATTCCTAGGTGATTC+GGG | - | Chr2:19904652-19904671 | MsG0280007744.01.T01:intron | 45.0% | |
| GGTTTCCAAGGATATGGCAA+AGG | - | Chr2:19904881-19904900 | MsG0280007744.01.T01:CDS | 45.0% | |
| TCCTGTTCCAAAAACCGTGA+CGG | - | Chr2:19904469-19904488 | MsG0280007744.01.T01:intron | 45.0% | |
| TTACATCGCGAAGTTTGGCT+AGG | + | Chr2:19904118-19904137 | None:intergenic | 45.0% | |
| TTGTTTGCAGCACTAGCAGA+TGG | + | Chr2:19904602-19904621 | None:intergenic | 45.0% | |
| ! | ATACCAGAAACCGGTTTCCA+AGG | - | Chr2:19904869-19904888 | MsG0280007744.01.T01:CDS | 45.0% |
| ! | CACATAACAGGAGGTGCATA+TGG | - | Chr2:19904272-19904291 | MsG0280007744.01.T01:intron | 45.0% |
| ! | CCACCTGAAGTTTTGCTTGA+AGG | - | Chr2:19904792-19904811 | MsG0280007744.01.T01:intron | 45.0% |
| ! | CTATGGGGGAGGAATTCTTT+TGG | - | Chr2:19904384-19904403 | MsG0280007744.01.T01:intron | 45.0% |
| ! | GAAACCGGTTTCCAAGGATA+TGG | - | Chr2:19904875-19904894 | MsG0280007744.01.T01:CDS | 45.0% |
| ! | TATCCTTGGAAACCGGTTTC+TGG | + | Chr2:19904875-19904894 | None:intergenic | 45.0% |
| ! | TTTTGGGCTATTAGAGGTGG+TGG | - | Chr2:19904401-19904420 | MsG0280007744.01.T01:intron | 45.0% |
| !! | ATTCAAGCCGGTGCTACTAT+CGG | - | Chr2:19904167-19904186 | MsG0280007744.01.T01:intron | 45.0% |
| !! | GCTGGTCTTTGCACAAGTTT+AGG | - | Chr2:19904239-19904258 | MsG0280007744.01.T01:intron | 45.0% |
| !! | TGCACAAGTTTAGGTGTTGG+TGG | - | Chr2:19904248-19904267 | MsG0280007744.01.T01:intron | 45.0% |
| !! | TGGAAACCGGTTTCTGGTAT+CGG | + | Chr2:19904869-19904888 | None:intergenic | 45.0% |
| AGAGAGCCGATACCAGAAAC+CGG | - | Chr2:19904860-19904879 | MsG0280007744.01.T01:intron | 50.0% | |
| AGGAGTTTCCCGAATCACCT+AGG | + | Chr2:19904663-19904682 | None:intergenic | 50.0% | |
| GATGTTCATGGTTTCCCTGC+TGG | - | Chr2:19904221-19904240 | MsG0280007744.01.T01:intron | 50.0% | |
| ! | GTTGGTGGACACATAACAGG+AGG | - | Chr2:19904263-19904282 | MsG0280007744.01.T01:intron | 50.0% |
| !! | GGTGTTGGTGGACACATAAC+AGG | - | Chr2:19904260-19904279 | MsG0280007744.01.T01:intron | 50.0% |
| !!! | ACCGTCACGGTTTTTGGAAC+AGG | + | Chr2:19904473-19904492 | None:intergenic | 50.0% |
| CACTTCGCCGATAGTAGCAC+CGG | + | Chr2:19904177-19904196 | None:intergenic | 55.0% | |
| ! | TGGGCTATTAGAGGTGGTGG+AGG | - | Chr2:19904404-19904423 | MsG0280007744.01.T01:intron | 55.0% |
| !! | GCTATTAGAGGTGGTGGAGG+TGG | - | Chr2:19904407-19904426 | MsG0280007744.01.T01:intron | 55.0% |
| !!! | GGTGGTGGAGGTGGAAGTTT+TGG | - | Chr2:19904416-19904435 | MsG0280007744.01.T01:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 19903936 | 19905419 | 19903936 | ID=MsG0280007744.01;Name=MsG0280007744.01 |
| Chr2 | mRNA | 19903936 | 19905419 | 19903936 | ID=MsG0280007744.01.T01;Parent=MsG0280007744.01;Name=MsG0280007744.01.T01;_AED=0.36;_eAED=0.42;_QI=0|0|0|1|1|0.5|2|0|246 |
| Chr2 | exon | 19904865 | 19905419 | 19904865 | ID=MsG0280007744.01.T01:exon:10293;Parent=MsG0280007744.01.T01 |
| Chr2 | exon | 19903936 | 19904121 | 19903936 | ID=MsG0280007744.01.T01:exon:10292;Parent=MsG0280007744.01.T01 |
| Chr2 | CDS | 19904865 | 19905419 | 19904865 | ID=MsG0280007744.01.T01:cds;Parent=MsG0280007744.01.T01 |
| Chr2 | CDS | 19903936 | 19904121 | 19903936 | ID=MsG0280007744.01.T01:cds;Parent=MsG0280007744.01.T01 |
| Gene Sequence |
| Protein sequence |
