AlfalfaGEDB | MsG0780039918.01

M. sativa cultivar ZhongmuNo.1 / MsG0780039918.01

KEGG: -
GO: GO:0004252 GO:0006508
PFAM: PF00082 PF05922

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039918.01.T01	XP_003624300.1	88.052	770	70	1	18	765	18	787	0	1375

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039918.01.T01	I1N462	69.962	789	208	4	4	765	3	789	0	1123

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039918.01.T01	G7KTF0	88.052	770	70	1	18	765	18	787	0.0	1375

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048652.01	MsG0780039918.01	0.846868	1.657653e-59	2.892797e-56
MsG0080048948.01	MsG0780039918.01	-0.813091	3.050952e-51	1.973528e-48
MsG0080049038.01	MsG0780039918.01	-0.803228	3.853804e-49	1.926150e-46
MsG0080049042.01	MsG0780039918.01	0.816605	5.073152e-52	3.611278e-49
MsG0180000076.01	MsG0780039918.01	0.838872	2.221341e-57	3.014939e-54
MsG0180001497.01	MsG0780039918.01	0.810009	1.426334e-50	8.502042e-48
MsG0180002546.01	MsG0780039918.01	-0.825579	4.339604e-54	3.971367e-51
MsG0180002808.01	MsG0780039918.01	0.801569	8.465848e-49	4.056270e-46
MsG0180003908.01	MsG0780039918.01	-0.808097	3.661853e-50	2.075079e-47
MsG0180004226.01	MsG0780039918.01	-0.810355	1.201108e-50	7.224221e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0780039918.01.T01	MTR_7g081420	88.052	770	70	1	18	765	18	787	1375
MsG0780039918.01.T01	MTR_7g081500	86.005	786	88	2	1	765	1	785	1338
MsG0780039918.01.T01	MTR_7g081580	79.194	769	139	1	18	765	18	786	1248
MsG0780039918.01.T01	MTR_7g481600	79.454	769	137	1	18	765	18	786	1228
MsG0780039918.01.T01	MTR_7g081380	79.389	786	118	5	24	765	24	809	1228
MsG0780039918.01.T01	MTR_7g081750	72.898	797	178	2	6	765	5	800	1182
MsG0780039918.01.T01	MTR_5g085690	58.779	786	285	11	11	762	8	788	894
MsG0780039918.01.T01	MTR_5g096750	53.211	763	311	13	27	765	27	767	781
MsG0780039918.01.T01	MTR_4g103400	52.091	789	324	22	10	762	6	776	756
MsG0780039918.01.T01	MTR_3g061110	50.445	787	334	17	1	764	1	754	738

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039918.01.T01	AT2G04160	50.393	764	340	15	25	763	22	771	0.0	723
MsG0780039918.01.T01	AT5G59810	50.587	767	336	15	20	763	29	775	0.0	722
MsG0780039918.01.T01	AT5G67360	43.580	771	383	21	16	762	12	754	0.0	568
MsG0780039918.01.T01	AT5G45650	40.431	789	390	22	30	762	24	788	2.01e-180	536
MsG0780039918.01.T01	AT5G45650	40.431	789	390	22	30	762	24	788	2.01e-180	536
MsG0780039918.01.T01	AT4G10520	40.177	789	406	19	1	765	1	747	8.49e-177	526
MsG0780039918.01.T01	AT2G05920	42.393	769	378	22	19	760	17	747	3.30e-174	519
MsG0780039918.01.T01	AT1G32940	39.764	762	408	18	31	765	28	765	1.05e-169	508
MsG0780039918.01.T01	AT1G32960	39.079	760	416	15	31	765	31	768	2.91e-169	507
MsG0780039918.01.T01	AT5G51750	40.467	771	395	23	28	762	32	774	6.41e-169	506

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Find 166 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGAAGGGTAAAATAG+TGG	0.497193	7:-70439334	MsG0780039918.01.T01:CDS
AAAATAAAATCAGTTGCTGA+AGG	0.585537	7:-70439294	MsG0780039918.01.T01:CDS
AAACCTCGACGATTGTCTGT+TGG	0.635715	7:+70438463	None:intergenic
AAATCGGCTATCATGACAAC+TGG	0.474263	7:-70438337	MsG0780039918.01.T01:intron
AACATGAAATTTACTTGTTC+AGG	0.330870	7:-70437686	MsG0780039918.01.T01:CDS
AACATGAGGGCAAGACATAG+AGG	0.602418	7:+70438417	None:intergenic
AACATTAACAACACTTCCAG+GGG	0.657824	7:+70439794	None:intergenic
AACTGCACACTACACGTTCT+TGG	0.318962	7:-70443102	MsG0780039918.01.T01:CDS
AAGAAAGCCAGCTCCAGTTA+TGG	0.487825	7:-70438913	MsG0780039918.01.T01:CDS
AAGAACACAGATATCACCTT+TGG	0.435040	7:+70443139	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGCTTTACTTCATCAGT+AGG	-	Chr7:70441444-70441463	MsG0780039918.01.T01:intron	30.0%
AAAAGTGAAGGGTAAAATAG+TGG	-	Chr7:70441574-70441593	MsG0780039918.01.T01:intron	30.0%
ACAGTGTTACATTGTATACT+TGG	-	Chr7:70437362-70437381	MsG0780039918.01.T01:exon	30.0%
ACTTACTTGTCAAGAAAATG+TGG	-	Chr7:70442988-70443007	MsG0780039918.01.T01:intron	30.0%
AGTTCAACCTTATATACTCA+AGG	-	Chr7:70442046-70442065	MsG0780039918.01.T01:intron	30.0%
ATACATATCAGGAAGCTAAT+TGG	-	Chr7:70440666-70440685	MsG0780039918.01.T01:intron	30.0%
ATAGCATTCAATCCAAGATT+TGG	+	Chr7:70443291-70443310	None:intergenic	30.0%
ATATTATTAGTTGCATCTGC+TGG	-	Chr7:70441077-70441096	MsG0780039918.01.T01:intron	30.0%
ATTCACCTTATAAGGTGATT+TGG	-	Chr7:70438880-70438899	MsG0780039918.01.T01:CDS	30.0%
CAAATGGAAAACACATTGTA+AGG	-	Chr7:70443511-70443530	MsG0780039918.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	70437148	70443782	70437148	ID=MsG0780039918.01;Name=MsG0780039918.01
Chr7	mRNA	70437148	70443782	70437148	ID=MsG0780039918.01.T01;Parent=MsG0780039918.01;Name=MsG0780039918.01.T01;_AED=0.49;_eAED=0.49;_QI=4\|0.8\|0.81\|1\|1\|1\|11\|222\|765
Chr7	exon	70437148	70437911	70437148	ID=MsG0780039918.01.T01:exon:13324;Parent=MsG0780039918.01.T01
Chr7	exon	70438338	70438554	70438338	ID=MsG0780039918.01.T01:exon:13323;Parent=MsG0780039918.01.T01
Chr7	exon	70438863	70438992	70438863	ID=MsG0780039918.01.T01:exon:13322;Parent=MsG0780039918.01.T01
Chr7	exon	70439201	70439389	70439201	ID=MsG0780039918.01.T01:exon:13321;Parent=MsG0780039918.01.T01
Chr7	exon	70439502	70439596	70439502	ID=MsG0780039918.01.T01:exon:13320;Parent=MsG0780039918.01.T01
Chr7	exon	70439710	70440253	70439710	ID=MsG0780039918.01.T01:exon:13319;Parent=MsG0780039918.01.T01
Chr7	exon	70440442	70440565	70440442	ID=MsG0780039918.01.T01:exon:13318;Parent=MsG0780039918.01.T01
Chr7	exon	70443011	70443166	70443011	ID=MsG0780039918.01.T01:exon:13317;Parent=MsG0780039918.01.T01
Chr7	exon	70443284	70443381	70443284	ID=MsG0780039918.01.T01:exon:13316;Parent=MsG0780039918.01.T01
Chr7	exon	70443455	70443564	70443455	ID=MsG0780039918.01.T01:exon:13315;Parent=MsG0780039918.01.T01
Chr7	exon	70443686	70443782	70443686	ID=MsG0780039918.01.T01:exon:13314;Parent=MsG0780039918.01.T01
Chr7	five_prime_UTR	70443779	70443782	70443779	ID=MsG0780039918.01.T01:five_prime_utr;Parent=MsG0780039918.01.T01
Chr7	CDS	70443686	70443778	70443686	ID=MsG0780039918.01.T01:cds;Parent=MsG0780039918.01.T01
Chr7	CDS	70443455	70443564	70443455	ID=MsG0780039918.01.T01:cds;Parent=MsG0780039918.01.T01
Chr7	CDS	70443284	70443381	70443284	ID=MsG0780039918.01.T01:cds;Parent=MsG0780039918.01.T01
Chr7	CDS	70443011	70443166	70443011	ID=MsG0780039918.01.T01:cds;Parent=MsG0780039918.01.T01
Chr7	CDS	70440442	70440565	70440442	ID=MsG0780039918.01.T01:cds;Parent=MsG0780039918.01.T01
Chr7	CDS	70439710	70440253	70439710	ID=MsG0780039918.01.T01:cds;Parent=MsG0780039918.01.T01
Chr7	CDS	70439502	70439596	70439502	ID=MsG0780039918.01.T01:cds;Parent=MsG0780039918.01.T01
Chr7	CDS	70439201	70439389	70439201	ID=MsG0780039918.01.T01:cds;Parent=MsG0780039918.01.T01
Chr7	CDS	70438863	70438992	70438863	ID=MsG0780039918.01.T01:cds;Parent=MsG0780039918.01.T01
Chr7	CDS	70438338	70438554	70438338	ID=MsG0780039918.01.T01:cds;Parent=MsG0780039918.01.T01
Chr7	CDS	70437370	70437911	70437370	ID=MsG0780039918.01.T01:cds;Parent=MsG0780039918.01.T01
Chr7	three_prime_UTR	70437148	70437369	70437148	ID=MsG0780039918.01.T01:three_prime_utr;Parent=MsG0780039918.01.T01

Gene Sequence

>MsG0780039918.01.T01

ATGAGTTGCTCCATTTTGTTTCCTCGTCATCTTCTTTTTTCATCTCTTCTTATTTTCACTTTGTTGCTGAATCATGTTCATGCCAGCAAAAAGTGTTACATTGTATACTTGGGAACACATTCACATGGTCGAACACCTTCTTCTTTTGACCTTGAAACTGCTACATCTTCTCATTATGATTTATTAAGCTCAGTCTTGGGAAGCAAGGAGAATGCAGAAGAAGCAATAATTTATTCATATAATAAACAGATTAATGGCTTTGCAGCTGTACTTGAAGAAGAAAAGGCTGCACAACTTGCAAAAAATCCAAAGGTGATATCTGTGTTCTTGAGCAAAGAGCATAAACTGCACACTACACGTTCTTGGGAATTTCTTGGATTGCGTGGAAATGATATCAACTCAGCTTGGCAAAAGGGAAGGTTTGGTGAAAATACCATCATAGCTAACATTGACACAGGTGTTTGGCCCGAATCAAGGAGTTTTAGCGACAGAGGAATAGGCCCAATTCCAGCAAAATGGCGTGGGGGTAATATCTGTCAAATTAACAAACTCAAACGTTCAAAGAAAGTTCCATGTAACAGGAAGCTAATTGGAGCCAGATTTTTCAGCGATGCTTATGAGCGATTTAATGGCAAACTTCACCCATCGCAGCGTACAGCACGTGACTTTGTAGGCCACGGTACTCATACACTATCAACAGCTGGTGGAAACTTTGTACCAGGTGCAAGCATATTTGGCATCGGCAATGGTACCATTAAAGGTGGTTCACCAAAATCAAGAGTTGCAACCTACAAAGTGTGTTGGTCACTAACAGATGCCGCTAGTTGTTTTGGTGCTGATGTATTATCTGCTATTGATCAAGCAATTAATGATGGTGTTGATATAATTTCTGTTTCTGCTGGAGGCCAATCTAGTACAAATTCTGAACAAATTTTTACCGATGAGGTTTCAATAGGTGCATTTCATGCACTTGCAAGAAATATATTATTAGTTGCATCTGCTGGAAATGATGGACCTACCCCTGGAAGTGTTGTTAATGTTGCTCCTTGGGTGTTCACTATTGCTGCTAGTACATTAGATAGAGACTTCAGCAGTACCATAACCATTGGTAACAAAACAACCACGGGAGCCAGTCTTTTTGTAACCTTGCCACCTAACCAGTCTTTCACTGTAGTGGATTCTACTGATGCTAAATTTGCCAATGTGACCAATCGAGATGCTCGATTTTGTAGACCAAGAACACTTGATCCTTCAAAAGTGAAGGGTAAAATAGTGGCATGTGCTCGAGAAGGGAAAATAAAATCAGTTGCTGAAGGTCAAGAAGCTTTATCTGCGGGTGCAAAGGGAATGATCTTGGAAAATCAACCAAAAATTAATGGGAGAACACTTCTTTCTGAGCCTCATGTTTTGGATACAATAGAGTCGGGTACAAAAATAAGATTGTCTCAAGCAAAAGCACTCTTTGGAAGAAAGCCAGCTCCAGTTATGGCTTCATTCTCATCTAGAGGACCTAATCAAGTTCAACCTTATATACTCAAGCCTGATGTAACTGCGCCTGGTGTGAACATACTTGCAGCGTTTTCATTGTTTGCAAGTGCATCTAACTTACCAACAGACAATCGTCGAGGTTTTCGGTTCAATGTAATGCAAGGAACCTCTATGTCTTGCCCTCATGTTGCTGGCACTGCTGGACTTATCAAAACACTTCACCCTAATTGGAGTCCAGCAGCTATTAAATCGGCTATCATGACAACTGCAAGCACAACAGATAACACCAACAAGCCAATACGCGATGCTTTTGGTAAAACACCAGCAGATCCATTTGCTTATGGTTCAGGACATATTCAACCCAACAGTGCAATGGATCCAGGACTTGTTTATGATCTAAGCATTAAGGATTACTTAAACTTCTTATGTGCTTCTGGATACAACCAACAACTCATTTCAGCACTTAATTTCAACATGAAATTTACTTGTTCAGGAACTCATAGCATAGATGACTTGAATTACCCTTCAATCACATTACCAAATCTTGGATTGAATGCTATTACTGTCACTCGTACAGTTACCAATGTTGGGCCACCAAGTACATATTTTGCAAAAGCTAAATTGCCTGGATATAAAATTCTTGTTGTGCCAAGTTCCTTGAATTTCAAGAAAATAGGTGAAAAGAAGACATTTCAAGTTATTGTGCAAGCAACAAGTGTGACTCCACGAAGGAAATACCAATTTGGGGAACTGCGGTGGACAAATGGAAAACACATTGTAAGGAGTCCTGTCACTGTTCGGCGCAAATGA

Protein sequence

>MsG0780039918.01.T01

MSCSILFPRHLLFSSLLIFTLLLNHVHASKKCYIVYLGTHSHGRTPSSFDLETATSSHYDLLSSVLGSKENAEEAIIYSYNKQINGFAAVLEEEKAAQLAKNPKVISVFLSKEHKLHTTRSWEFLGLRGNDINSAWQKGRFGENTIIANIDTGVWPESRSFSDRGIGPIPAKWRGGNICQINKLKRSKKVPCNRKLIGARFFSDAYERFNGKLHPSQRTARDFVGHGTHTLSTAGGNFVPGASIFGIGNGTIKGGSPKSRVATYKVCWSLTDAASCFGADVLSAIDQAINDGVDIISVSAGGQSSTNSEQIFTDEVSIGAFHALARNILLVASAGNDGPTPGSVVNVAPWVFTIAASTLDRDFSSTITIGNKTTTGASLFVTLPPNQSFTVVDSTDAKFANVTNRDARFCRPRTLDPSKVKGKIVACAREGKIKSVAEGQEALSAGAKGMILENQPKINGRTLLSEPHVLDTIESGTKIRLSQAKALFGRKPAPVMASFSSRGPNQVQPYILKPDVTAPGVNILAAFSLFASASNLPTDNRRGFRFNVMQGTSMSCPHVAGTAGLIKTLHPNWSPAAIKSAIMTTASTTDNTNKPIRDAFGKTPADPFAYGSGHIQPNSAMDPGLVYDLSIKDYLNFLCASGYNQQLISALNFNMKFTCSGTHSIDDLNYPSITLPNLGLNAITVTRTVTNVGPPSTYFAKAKLPGYKILVVPSSLNFKKIGEKKTFQVIVQATSVTPRRKYQFGELRWTNGKHIVRSPVTVRRK*