Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018185.01.T01 | XP_003604238.1 | 98.81 | 336 | 4 | 0 | 1 | 336 | 1 | 336 | 0 | 689 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018185.01.T01 | A0A059TC02 | 75.46 | 326 | 78 | 1 | 9 | 334 | 3 | 326 | 0 | 521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018185.01.T01 | G7JEE5 | 98.810 | 336 | 4 | 0 | 1 | 336 | 1 | 336 | 0.0 | 689 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080049066.01 | MsG0480018185.01 | -0.807789 | 4.256517e-50 | 2.392621e-47 |
| MsG0180001358.01 | MsG0480018185.01 | 0.848226 | 7.015476e-60 | 1.278547e-56 |
| MsG0180005272.01 | MsG0480018185.01 | 0.820683 | 6.027144e-53 | 4.801095e-50 |
| MsG0180005757.01 | MsG0480018185.01 | 0.800659 | 1.299135e-48 | 6.083267e-46 |
| MsG0380011674.01 | MsG0480018185.01 | 0.834396 | 3.070196e-56 | 3.638963e-53 |
| MsG0380016110.01 | MsG0480018185.01 | 0.816581 | 5.136864e-52 | 3.654098e-49 |
| MsG0380016838.01 | MsG0480018185.01 | 0.803280 | 3.759234e-49 | 1.881381e-46 |
| MsG0380016865.01 | MsG0480018185.01 | 0.837932 | 3.881102e-57 | 5.118859e-54 |
| MsG0380018007.01 | MsG0480018185.01 | 0.802302 | 5.983766e-49 | 2.921174e-46 |
| MsG0480018185.01 | MsG0480018563.01 | 0.816530 | 5.272886e-52 | 3.745676e-49 |
| MsG0480018185.01 | MsG0480021131.01 | 0.838945 | 2.126750e-57 | 2.892780e-54 |
| MsG0480018185.01 | MsG0480022090.01 | 0.816105 | 6.564094e-52 | 4.609133e-49 |
| MsG0480018185.01 | MsG0480023944.01 | 0.803138 | 4.021406e-49 | 2.005325e-46 |
| MsG0480018185.01 | MsG0580024871.01 | 0.827891 | 1.217720e-54 | 1.191199e-51 |
| MsG0480018185.01 | MsG0580029257.01 | 0.815018 | 1.145891e-51 | 7.810176e-49 |
| MsG0480018185.01 | MsG0580029911.01 | 0.811538 | 6.660852e-51 | 4.134037e-48 |
| MsG0480018185.01 | MsG0580030019.01 | 0.827147 | 1.837056e-54 | 1.758443e-51 |
| MsG0480018185.01 | MsG0680031425.01 | 0.814931 | 1.198386e-51 | 8.148259e-49 |
| MsG0480018185.01 | MsG0680035584.01 | -0.802993 | 4.308536e-49 | 2.140498e-46 |
| MsG0480018185.01 | MsG0780038810.01 | 0.802764 | 4.805614e-49 | 2.373749e-46 |
| MsG0480018185.01 | MsG0780039917.01 | 0.851033 | 1.155219e-60 | 2.307504e-57 |
| MsG0480018185.01 | MsG0780039918.01 | 0.806398 | 8.388859e-50 | 4.548431e-47 |
| MsG0480018185.01 | MsG0780039924.01 | 0.847505 | 1.108697e-59 | 1.974844e-56 |
| MsG0480018185.01 | MsG0780041180.01 | 0.813958 | 1.966159e-51 | 1.302199e-48 |
| MsG0480018185.01 | MsG0780041625.01 | -0.807159 | 5.791482e-50 | 3.202412e-47 |
| MsG0480018185.01 | MsG0880044792.01 | 0.806793 | 6.923397e-50 | 3.792171e-47 |
| MsG0480018185.01 | MsG0880045804.01 | 0.822532 | 2.252292e-53 | 1.890331e-50 |
| MsG0480018185.01 | MsG0880047493.01 | 0.823611 | 1.261655e-53 | 1.091668e-50 |
| MsG0280007686.01 | MsG0480018185.01 | 0.807087 | 5.999600e-50 | 3.311187e-47 |
| MsG0280007744.01 | MsG0480018185.01 | 0.834805 | 2.423015e-56 | 2.906971e-53 |
| MsG0280007983.01 | MsG0480018185.01 | 0.830047 | 3.659706e-55 | 3.812302e-52 |
| MsG0280008271.01 | MsG0480018185.01 | 0.838225 | 3.263567e-57 | 4.342477e-54 |
| MsG0280010173.01 | MsG0480018185.01 | 0.807183 | 5.724293e-50 | 3.167298e-47 |
| MsG0280010240.01 | MsG0480018185.01 | 0.824108 | 9.651118e-54 | 8.468147e-51 |
| MsG0280010296.01 | MsG0480018185.01 | 0.800736 | 1.252895e-48 | 5.878096e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0380017127.01 | MsG0480018185.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018185.01.T01 | MTR_4g006940 | 98.810 | 336 | 4 | 0 | 1 | 336 | 1 | 336 | 0.0 | 689 |
| MsG0480018185.01.T01 | MTR_4g006940 | 99.286 | 280 | 2 | 0 | 1 | 280 | 1 | 280 | 0.0 | 574 |
| MsG0480018185.01.T01 | MTR_4g006940 | 99.286 | 280 | 2 | 0 | 1 | 280 | 1 | 280 | 0.0 | 574 |
| MsG0480018185.01.T01 | MTR_2g104960 | 81.155 | 329 | 59 | 2 | 7 | 335 | 12 | 337 | 0.0 | 536 |
| MsG0480018185.01.T01 | MTR_3g005170 | 51.242 | 322 | 148 | 6 | 9 | 323 | 2 | 321 | 2.87e-105 | 311 |
| MsG0480018185.01.T01 | MTR_3g005210 | 50.159 | 315 | 148 | 6 | 16 | 323 | 5 | 317 | 7.03e-104 | 308 |
| MsG0480018185.01.T01 | MTR_4g077100 | 48.125 | 320 | 157 | 6 | 11 | 323 | 5 | 322 | 1.27e-96 | 289 |
| MsG0480018185.01.T01 | MTR_5g072620 | 46.519 | 316 | 162 | 3 | 15 | 324 | 3 | 317 | 2.53e-96 | 288 |
| MsG0480018185.01.T01 | MTR_8g062440 | 47.531 | 324 | 160 | 6 | 10 | 326 | 1 | 321 | 1.57e-95 | 286 |
| MsG0480018185.01.T01 | MTR_4g077130 | 47.500 | 320 | 159 | 7 | 11 | 323 | 3 | 320 | 9.14e-95 | 285 |
| MsG0480018185.01.T01 | MTR_4g009040 | 46.296 | 324 | 162 | 4 | 11 | 326 | 4 | 323 | 1.40e-94 | 284 |
| MsG0480018185.01.T01 | MTR_4g009040 | 45.732 | 328 | 162 | 4 | 11 | 326 | 4 | 327 | 5.84e-94 | 283 |
| MsG0480018185.01.T01 | MTR_8g062440 | 47.385 | 325 | 160 | 7 | 10 | 326 | 1 | 322 | 1.54e-93 | 281 |
| MsG0480018185.01.T01 | MTR_8g062110 | 47.352 | 321 | 159 | 6 | 10 | 323 | 11 | 328 | 4.80e-93 | 280 |
| MsG0480018185.01.T01 | MTR_8g062110 | 47.352 | 321 | 159 | 6 | 10 | 323 | 2 | 319 | 4.83e-93 | 280 |
| MsG0480018185.01.T01 | MTR_3g005170 | 51.254 | 279 | 128 | 5 | 9 | 280 | 2 | 279 | 7.49e-91 | 273 |
| MsG0480018185.01.T01 | MTR_4g009690 | 46.914 | 324 | 160 | 4 | 11 | 326 | 4 | 323 | 1.31e-88 | 269 |
| MsG0480018185.01.T01 | MTR_3g005170 | 46.541 | 318 | 138 | 6 | 9 | 323 | 2 | 290 | 2.09e-88 | 267 |
| MsG0480018185.01.T01 | MTR_4g009690 | 47.222 | 324 | 158 | 5 | 11 | 326 | 4 | 322 | 3.92e-88 | 268 |
| MsG0480018185.01.T01 | MTR_4g077100 | 49.458 | 277 | 132 | 5 | 11 | 280 | 5 | 280 | 1.67e-84 | 257 |
| MsG0480018185.01.T01 | MTR_3g031650 | 42.089 | 316 | 176 | 3 | 15 | 324 | 3 | 317 | 1.71e-83 | 256 |
| MsG0480018185.01.T01 | MTR_8g062440 | 48.571 | 280 | 135 | 5 | 10 | 282 | 1 | 278 | 4.65e-82 | 252 |
| MsG0480018185.01.T01 | MTR_8g062110 | 47.842 | 278 | 136 | 5 | 10 | 280 | 2 | 277 | 6.63e-81 | 248 |
| MsG0480018185.01.T01 | MTR_8g062110 | 47.842 | 278 | 136 | 5 | 10 | 280 | 2 | 277 | 7.49e-81 | 248 |
| MsG0480018185.01.T01 | MTR_5g056600 | 41.456 | 316 | 177 | 5 | 18 | 326 | 5 | 319 | 4.17e-80 | 247 |
| MsG0480018185.01.T01 | MTR_1g022440 | 41.411 | 326 | 173 | 11 | 15 | 327 | 6 | 326 | 1.93e-76 | 238 |
| MsG0480018185.01.T01 | MTR_3g031650 | 44.569 | 267 | 142 | 2 | 15 | 275 | 3 | 269 | 3.76e-76 | 235 |
| MsG0480018185.01.T01 | MTR_2g028620 | 41.176 | 323 | 177 | 6 | 14 | 326 | 7 | 326 | 3.71e-75 | 234 |
| MsG0480018185.01.T01 | MTR_2g101330 | 39.506 | 324 | 185 | 5 | 17 | 332 | 5 | 325 | 1.05e-74 | 233 |
| MsG0480018185.01.T01 | MTR_1g022445 | 41.159 | 328 | 171 | 12 | 15 | 327 | 6 | 326 | 2.44e-73 | 230 |
| MsG0480018185.01.T01 | MTR_2g028620 | 42.336 | 274 | 146 | 5 | 14 | 277 | 7 | 278 | 5.12e-64 | 206 |
| MsG0480018185.01.T01 | MTR_4g092080 | 35.385 | 325 | 189 | 9 | 18 | 324 | 15 | 336 | 5.48e-54 | 180 |
| MsG0480018185.01.T01 | MTR_7g074880 | 33.333 | 327 | 201 | 9 | 13 | 326 | 4 | 326 | 5.68e-54 | 180 |
| MsG0480018185.01.T01 | MTR_8g062110 | 41.964 | 224 | 125 | 4 | 102 | 323 | 13 | 233 | 1.24e-52 | 174 |
| MsG0480018185.01.T01 | MTR_7g074820 | 33.837 | 331 | 197 | 12 | 13 | 326 | 4 | 329 | 1.66e-51 | 174 |
| MsG0480018185.01.T01 | MTR_7g074730 | 33.435 | 329 | 200 | 10 | 13 | 326 | 4 | 328 | 2.85e-51 | 173 |
| MsG0480018185.01.T01 | MTR_4g081440 | 34.328 | 335 | 190 | 10 | 18 | 327 | 21 | 350 | 1.32e-49 | 169 |
| MsG0480018185.01.T01 | MTR_4g081440 | 34.821 | 336 | 188 | 11 | 18 | 327 | 25 | 355 | 1.71e-49 | 169 |
| MsG0480018185.01.T01 | MTR_7g074850 | 32.432 | 333 | 199 | 12 | 13 | 326 | 4 | 329 | 6.71e-48 | 164 |
| MsG0480018185.01.T01 | MTR_4g023730 | 33.846 | 325 | 197 | 10 | 17 | 326 | 8 | 329 | 2.51e-44 | 155 |
| MsG0480018185.01.T01 | MTR_7g074710 | 32.622 | 328 | 202 | 12 | 13 | 326 | 4 | 326 | 4.65e-44 | 154 |
| MsG0480018185.01.T01 | MTR_8g062110 | 41.436 | 181 | 102 | 3 | 102 | 280 | 13 | 191 | 8.56e-41 | 141 |
| MsG0480018185.01.T01 | MTR_6g406250 | 34.333 | 300 | 178 | 8 | 13 | 299 | 51 | 344 | 4.24e-40 | 144 |
| MsG0480018185.01.T01 | MTR_0685s0030 | 41.875 | 160 | 91 | 2 | 164 | 323 | 2 | 159 | 1.88e-37 | 132 |
| MsG0480018185.01.T01 | MTR_7g074870 | 30.000 | 290 | 186 | 10 | 50 | 326 | 3 | 288 | 7.50e-34 | 126 |
| MsG0480018185.01.T01 | MTR_5g029990 | 30.449 | 312 | 192 | 10 | 2 | 306 | 3 | 296 | 1.28e-33 | 125 |
| MsG0480018185.01.T01 | MTR_2g013250 | 27.219 | 338 | 217 | 10 | 17 | 328 | 7 | 341 | 2.44e-28 | 112 |
| MsG0480018185.01.T01 | MTR_6g406250 | 33.491 | 212 | 128 | 5 | 13 | 213 | 51 | 260 | 2.21e-26 | 105 |
| MsG0480018185.01.T01 | MTR_7g117190 | 27.059 | 340 | 212 | 13 | 17 | 326 | 7 | 340 | 2.92e-26 | 107 |
| MsG0480018185.01.T01 | MTR_0164s0070 | 43.262 | 141 | 61 | 4 | 17 | 138 | 5 | 145 | 3.74e-26 | 103 |
| MsG0480018185.01.T01 | MTR_2g013230 | 27.874 | 348 | 202 | 13 | 17 | 328 | 8 | 342 | 3.82e-26 | 107 |
| MsG0480018185.01.T01 | MTR_0685s0030 | 42.735 | 117 | 66 | 1 | 164 | 280 | 2 | 117 | 1.02e-25 | 99.8 |
| MsG0480018185.01.T01 | MTR_2g013260 | 26.393 | 341 | 208 | 11 | 17 | 324 | 8 | 338 | 2.66e-25 | 104 |
| MsG0480018185.01.T01 | MTR_7g117190 | 28.620 | 297 | 180 | 12 | 17 | 284 | 7 | 300 | 5.75e-25 | 103 |
| MsG0480018185.01.T01 | MTR_2g013260 | 26.689 | 296 | 178 | 9 | 17 | 280 | 8 | 296 | 2.52e-23 | 98.2 |
| MsG0480018185.01.T01 | MTR_3g011130 | 41.667 | 108 | 60 | 3 | 108 | 212 | 35 | 142 | 2.21e-18 | 80.9 |
| MsG0480018185.01.T01 | MTR_8g062710 | 48.750 | 80 | 31 | 1 | 17 | 96 | 20 | 89 | 1.56e-17 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018185.01.T01 | AT1G80820 | 73.968 | 315 | 82 | 0 | 15 | 329 | 6 | 320 | 3.08e-171 | 479 |
| MsG0480018185.01.T01 | AT1G15950 | 72.871 | 317 | 86 | 0 | 10 | 326 | 6 | 322 | 3.39e-167 | 469 |
| MsG0480018185.01.T01 | AT1G15950 | 72.871 | 317 | 86 | 0 | 10 | 326 | 6 | 322 | 3.39e-167 | 469 |
| MsG0480018185.01.T01 | AT1G15950 | 72.168 | 309 | 86 | 0 | 10 | 318 | 6 | 314 | 1.22e-159 | 450 |
| MsG0480018185.01.T01 | AT1G80820 | 73.308 | 266 | 71 | 0 | 15 | 280 | 6 | 271 | 4.13e-138 | 393 |
| MsG0480018185.01.T01 | AT1G15950 | 72.222 | 270 | 75 | 0 | 11 | 280 | 7 | 276 | 1.63e-136 | 389 |
| MsG0480018185.01.T01 | AT1G15950 | 71.533 | 274 | 78 | 0 | 11 | 284 | 7 | 280 | 1.90e-136 | 389 |
| MsG0480018185.01.T01 | AT1G15950 | 72.119 | 269 | 75 | 0 | 11 | 279 | 7 | 275 | 9.66e-136 | 387 |
| MsG0480018185.01.T01 | AT1G15950 | 75.893 | 224 | 54 | 0 | 103 | 326 | 1 | 224 | 7.38e-115 | 333 |
| MsG0480018185.01.T01 | AT5G19440 | 51.090 | 321 | 148 | 6 | 11 | 324 | 4 | 322 | 3.57e-105 | 311 |
| MsG0480018185.01.T01 | AT1G51410 | 48.457 | 324 | 156 | 7 | 11 | 326 | 3 | 323 | 3.35e-98 | 293 |
| MsG0480018185.01.T01 | AT5G58490 | 44.025 | 318 | 171 | 3 | 15 | 326 | 7 | 323 | 3.56e-87 | 265 |
| MsG0480018185.01.T01 | AT1G66800 | 47.385 | 325 | 150 | 8 | 10 | 323 | 1 | 315 | 1.08e-86 | 264 |
| MsG0480018185.01.T01 | AT1G09480 | 44.037 | 327 | 168 | 7 | 10 | 326 | 1 | 322 | 4.82e-86 | 262 |
| MsG0480018185.01.T01 | AT2G33590 | 47.436 | 312 | 154 | 5 | 17 | 322 | 9 | 316 | 1.25e-85 | 261 |
| MsG0480018185.01.T01 | AT1G09480 | 44.037 | 327 | 168 | 7 | 10 | 326 | 48 | 369 | 1.33e-85 | 263 |
| MsG0480018185.01.T01 | AT1G09510 | 45.031 | 322 | 166 | 7 | 10 | 323 | 1 | 319 | 3.25e-85 | 260 |
| MsG0480018185.01.T01 | AT1G09490 | 44.410 | 322 | 168 | 7 | 13 | 326 | 4 | 322 | 9.73e-85 | 259 |
| MsG0480018185.01.T01 | AT2G02400 | 41.509 | 318 | 177 | 4 | 15 | 326 | 4 | 318 | 9.50e-83 | 254 |
| MsG0480018185.01.T01 | AT1G09500 | 44.000 | 325 | 168 | 8 | 10 | 323 | 1 | 322 | 2.98e-81 | 250 |
| MsG0480018185.01.T01 | AT1G76470 | 43.614 | 321 | 171 | 3 | 15 | 327 | 5 | 323 | 4.19e-80 | 247 |
| MsG0480018185.01.T01 | AT4G35420 | 42.587 | 317 | 172 | 7 | 17 | 326 | 8 | 321 | 1.00e-79 | 246 |
| MsG0480018185.01.T01 | AT1G68540 | 40.379 | 317 | 179 | 5 | 19 | 326 | 6 | 321 | 7.25e-75 | 234 |
| MsG0480018185.01.T01 | AT1G09500 | 46.182 | 275 | 135 | 7 | 10 | 274 | 1 | 272 | 1.39e-74 | 231 |
| MsG0480018185.01.T01 | AT2G33600 | 45.513 | 312 | 160 | 5 | 17 | 322 | 9 | 316 | 1.24e-73 | 230 |
| MsG0480018185.01.T01 | AT1G25460 | 36.825 | 315 | 191 | 4 | 19 | 326 | 6 | 319 | 1.14e-66 | 213 |
| MsG0480018185.01.T01 | AT5G42800 | 39.264 | 326 | 182 | 10 | 15 | 328 | 6 | 327 | 7.31e-66 | 213 |
| MsG0480018185.01.T01 | AT1G09490 | 41.135 | 282 | 156 | 6 | 52 | 326 | 13 | 291 | 2.98e-64 | 205 |
| MsG0480018185.01.T01 | AT1G09500 | 41.667 | 288 | 154 | 8 | 47 | 323 | 4 | 288 | 2.45e-61 | 198 |
| MsG0480018185.01.T01 | AT2G45400 | 35.976 | 328 | 191 | 10 | 16 | 326 | 39 | 364 | 5.20e-53 | 179 |
| MsG0480018185.01.T01 | AT1G61720 | 34.084 | 311 | 185 | 9 | 13 | 306 | 9 | 316 | 6.97e-51 | 172 |
| MsG0480018185.01.T01 | AT2G45400 | 37.276 | 279 | 160 | 7 | 16 | 279 | 39 | 317 | 5.11e-49 | 167 |
| MsG0480018185.01.T01 | AT4G27250 | 35.647 | 317 | 171 | 12 | 18 | 306 | 14 | 325 | 1.35e-47 | 164 |
| MsG0480018185.01.T01 | AT4G27250 | 35.922 | 309 | 171 | 12 | 18 | 306 | 14 | 315 | 5.71e-47 | 162 |
| MsG0480018185.01.T01 | AT1G68540 | 37.441 | 211 | 130 | 2 | 117 | 326 | 5 | 214 | 3.35e-46 | 156 |
| MsG0480018185.01.T01 | AT2G23910 | 32.441 | 299 | 176 | 8 | 18 | 302 | 11 | 297 | 6.42e-44 | 153 |
| MsG0480018185.01.T01 | AT2G23910 | 32.971 | 276 | 160 | 7 | 18 | 280 | 11 | 274 | 7.41e-44 | 152 |
| MsG0480018185.01.T01 | AT2G23910 | 33.212 | 274 | 158 | 7 | 18 | 278 | 11 | 272 | 1.29e-43 | 151 |
| MsG0480018185.01.T01 | AT4G30470 | 30.952 | 294 | 186 | 6 | 18 | 302 | 11 | 296 | 1.24e-38 | 139 |
| MsG0480018185.01.T01 | AT2G45400 | 32.653 | 294 | 180 | 9 | 49 | 326 | 16 | 307 | 1.42e-35 | 131 |
| MsG0480018185.01.T01 | AT5G14700 | 33.213 | 277 | 161 | 8 | 12 | 270 | 50 | 320 | 1.74e-35 | 132 |
| MsG0480018185.01.T01 | AT2G23910 | 31.679 | 262 | 154 | 7 | 54 | 302 | 14 | 263 | 1.16e-34 | 128 |
| MsG0480018185.01.T01 | AT2G45400 | 37.037 | 216 | 122 | 6 | 16 | 217 | 39 | 254 | 5.41e-34 | 125 |
| MsG0480018185.01.T01 | AT5G14700 | 32.444 | 225 | 132 | 6 | 12 | 221 | 50 | 269 | 9.24e-27 | 107 |
| MsG0480018185.01.T01 | AT4G33360 | 28.279 | 244 | 152 | 8 | 17 | 253 | 15 | 242 | 1.11e-17 | 82.8 |
| MsG0480018185.01.T01 | AT4G33360 | 28.279 | 244 | 152 | 8 | 17 | 253 | 3 | 230 | 1.39e-17 | 82.8 |
| MsG0480018185.01.T01 | AT4G33360 | 28.279 | 244 | 152 | 8 | 17 | 253 | 15 | 242 | 1.81e-17 | 82.4 |
Find 86 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAACATCTCTACTCGTATT+TGG | 0.157013 | 4:-1312607 | None:intergenic |
| TAAGAAGAAATCAATTAATT+TGG | 0.195444 | 4:-1311824 | None:intergenic |
| CTGGCGGGTTCATAGCTTCT+TGG | 0.234598 | 4:+1311922 | MsG0480018185.01.T01:CDS |
| CACATACTCAAGTACCTTAA+TGG | 0.246418 | 4:+1312954 | MsG0480018185.01.T01:CDS |
| ATGCTATAATATACTCTTGT+AGG | 0.276982 | 4:+1314489 | MsG0480018185.01.T01:three_prime_UTR |
| TCTTTCAAGTGATCATTCTT+TGG | 0.278143 | 4:-1312230 | None:intergenic |
| TGGTGAGGTTGTTGAAATTT+TGG | 0.282212 | 4:+1313109 | MsG0480018185.01.T01:CDS |
| GTGAACCCAGTTGTGGTTCT+TGG | 0.286947 | 4:+1312894 | MsG0480018185.01.T01:CDS |
| TCTATTCAATCTGTTGTTCA+TGG | 0.292368 | 4:+1312311 | MsG0480018185.01.T01:CDS |
| ATCGATTGGAACGGTCTATA+TGG | 0.308610 | 4:+1312582 | MsG0480018185.01.T01:CDS |
| TATGAAACAAATTCTGCTTC+TGG | 0.312614 | 4:+1313053 | MsG0480018185.01.T01:CDS |
| AAAAGAAAATCAAGTGGATT+TGG | 0.317876 | 4:+1312866 | MsG0480018185.01.T01:CDS |
| GAATGATCACTTGAAAGAAT+TGG | 0.322640 | 4:+1312235 | MsG0480018185.01.T01:CDS |
| TTGGCTTGTCAAACTTCTCT+TGG | 0.330178 | 4:+1311941 | MsG0480018185.01.T01:CDS |
| AATATGTATGGTTTCACTCT+TGG | 0.331350 | 4:-1314325 | None:intergenic |
| ATAATGTGATAACTCAAATA+TGG | 0.343716 | 4:-1311734 | None:intergenic |
| TTCTTTGTTCCATTCACTGC+TGG | 0.346517 | 4:-1312508 | None:intergenic |
| AATGTTTATATGAAACTGTT+AGG | 0.352716 | 4:+1314398 | MsG0480018185.01.T01:CDS |
| TGTTGCATTCACATAAGTTT+TGG | 0.352789 | 4:-1312982 | None:intergenic |
| GAAAGAGGTTACACTGTTAG+AGG | 0.360156 | 4:+1311963 | MsG0480018185.01.T01:CDS |
| AAATTTGCATACCTGGGTTT+CGG | 0.363831 | 4:-1311992 | None:intergenic |
| GTGCAGAACTGGTATTGTTA+TGG | 0.378304 | 4:+1312807 | MsG0480018185.01.T01:intron |
| CAACATCTCTACTCGTATTT+GGG | 0.388520 | 4:-1312606 | None:intergenic |
| TCTTCTTGCATGGGAGGAAT+AGG | 0.388850 | 4:-1314445 | None:intergenic |
| ACAATCTTATGTTCATGTTA+AGG | 0.400887 | 4:+1313004 | MsG0480018185.01.T01:CDS |
| TTATTCTTTGCTATCTCCAT+TGG | 0.403938 | 4:+1311753 | MsG0480018185.01.T01:five_prime_UTR |
| ATCGTGTGTGTCACCGGTGC+TGG | 0.407046 | 4:+1311903 | MsG0480018185.01.T01:CDS |
| CACCGGTGACACACACGATT+TGG | 0.409017 | 4:-1311899 | None:intergenic |
| TGCAGAACTGGTATTGTTAT+GGG | 0.425363 | 4:+1312808 | MsG0480018185.01.T01:intron |
| TTAATTGTTGGTTGAAGTAA+TGG | 0.425863 | 4:-1312918 | None:intergenic |
| TTGTCGTTGATGAATCATAT+TGG | 0.431635 | 4:+1312626 | MsG0480018185.01.T01:CDS |
| AATGGTCCAAGAACCACAAC+TGG | 0.433883 | 4:-1312900 | None:intergenic |
| GGAAGATAGATGCTTCTTGT+TGG | 0.442890 | 4:-1311713 | None:intergenic |
| TCATATAAACATTGCTTCAC+GGG | 0.445962 | 4:-1314388 | None:intergenic |
| TTCATATAAACATTGCTTCA+CGG | 0.454491 | 4:-1314389 | None:intergenic |
| ATTGTACTAGCATTAATTGT+TGG | 0.463159 | 4:-1312930 | None:intergenic |
| CTTACAGGGTTGTCGGTGAC+AGG | 0.466203 | 4:-1312362 | None:intergenic |
| GTCAAACTTCTCTTGGAAAG+AGG | 0.467940 | 4:+1311948 | MsG0480018185.01.T01:CDS |
| AGAGAGGCTAACTTTGCATA+AGG | 0.471199 | 4:+1312268 | MsG0480018185.01.T01:CDS |
| AAATCAAAAGCTGAAAGACT+TGG | 0.471600 | 4:+1314351 | MsG0480018185.01.T01:CDS |
| AAAATTCCTTACAGGGTTGT+CGG | 0.489586 | 4:-1312369 | None:intergenic |
| AACACTTACTTGGTAGGAAG+TGG | 0.490475 | 4:-1313152 | None:intergenic |
| GATAACACTTCATCAGTCTC+TGG | 0.493312 | 4:+1311870 | MsG0480018185.01.T01:CDS |
| GACTGATGAAGTGTTATCAT+AGG | 0.499014 | 4:-1311865 | None:intergenic |
| CATATAATAGGATGAGATGT+TGG | 0.502572 | 4:+1312483 | MsG0480018185.01.T01:intron |
| TTATGTTCATGTTAAGGATG+TGG | 0.505241 | 4:+1313010 | MsG0480018185.01.T01:CDS |
| AAAGCTGAAAGACTTGGGAT+TGG | 0.510048 | 4:+1314357 | MsG0480018185.01.T01:CDS |
| AAATCAAGTGGATTTGGTTG+TGG | 0.521484 | 4:+1312872 | MsG0480018185.01.T01:CDS |
| GACCAAATCGTGTGTGTCAC+CGG | 0.524328 | 4:+1311897 | MsG0480018185.01.T01:CDS |
| AGCTATGAACCCGCCAGCAC+CGG | 0.525430 | 4:-1311916 | None:intergenic |
| TTAAGCAGAGTCTTCTTGCA+TGG | 0.532426 | 4:-1314455 | None:intergenic |
| ATGTTGGAGCCAGCAGTGAA+TGG | 0.533675 | 4:+1312499 | MsG0480018185.01.T01:CDS |
| TGTGTGTCACCGGTGCTGGC+GGG | 0.540247 | 4:+1311907 | MsG0480018185.01.T01:CDS |
| GATGAAGTGTTATCATAGGC+AGG | 0.541028 | 4:-1311861 | None:intergenic |
| GTGTGTGTCACCGGTGCTGG+CGG | 0.544302 | 4:+1311906 | MsG0480018185.01.T01:CDS |
| AATCAAAAGCTGAAAGACTT+GGG | 0.547219 | 4:+1314352 | MsG0480018185.01.T01:CDS |
| TTGGTAGGAAGTGGGTACTC+AGG | 0.551005 | 4:-1313143 | None:intergenic |
| TCTGTTGTTCATGGTTGCCA+TGG | 0.552494 | 4:+1312320 | MsG0480018185.01.T01:CDS |
| GTATCAAACACTTACTTGGT+AGG | 0.553678 | 4:-1313158 | None:intergenic |
| GTTGTGTTCACTTCATCGAT+TGG | 0.555777 | 4:+1312568 | MsG0480018185.01.T01:CDS |
| TAAGCAGAGTCTTCTTGCAT+GGG | 0.557099 | 4:-1314454 | None:intergenic |
| AGAGGAACCGTCCGAAACCC+AGG | 0.563011 | 4:+1311981 | MsG0480018185.01.T01:CDS |
| GTTAGGAGTCTACAAGAGAA+AGG | 0.565801 | 4:+1314415 | MsG0480018185.01.T01:CDS |
| GGTTGTGGTGAACCCAGTTG+TGG | 0.566597 | 4:+1312887 | MsG0480018185.01.T01:CDS |
| TGGGTACTCAGGAAAATACT+TGG | 0.568031 | 4:-1313132 | None:intergenic |
| GCAGAGTCTTCTTGCATGGG+AGG | 0.572180 | 4:-1314451 | None:intergenic |
| GATCACTTGAAAGAATTGGA+AGG | 0.576295 | 4:+1312239 | MsG0480018185.01.T01:CDS |
| TTGCATACCTGGGTTTCGGA+CGG | 0.587038 | 4:-1311988 | None:intergenic |
| GTTCACTTCATCGATTGGAA+CGG | 0.592538 | 4:+1312573 | MsG0480018185.01.T01:CDS |
| AACTGCTTTGCATCGTGGTG+AGG | 0.603860 | 4:+1313094 | MsG0480018185.01.T01:CDS |
| CACTAGAAAAGAAAGACCAA+TGG | 0.621788 | 4:-1311769 | None:intergenic |
| AGGGTTGTCGGTGACAGGAG+AGG | 0.622915 | 4:-1312357 | None:intergenic |
| CATAGCAAAAGAAAATCAAG+TGG | 0.623276 | 4:+1312860 | MsG0480018185.01.T01:CDS |
| CAGTGGCTGAACAATCAGCA+TGG | 0.627131 | 4:+1312835 | MsG0480018185.01.T01:CDS |
| AGGCTGTGTGGAACACACCA+TGG | 0.639078 | 4:-1312337 | None:intergenic |
| AGTGGCTGAACAATCAGCAT+GGG | 0.640259 | 4:+1312836 | MsG0480018185.01.T01:CDS |
| AACACTTCATCAGTCTCTGG+TGG | 0.644313 | 4:+1311873 | MsG0480018185.01.T01:CDS |
| CTTGCATGGGAGGAATAGGA+AGG | 0.645331 | 4:-1314441 | None:intergenic |
| AATTGGAAGGAGCAAGAGAG+AGG | 0.645670 | 4:+1312252 | MsG0480018185.01.T01:CDS |
| ACACTTACTTGGTAGGAAGT+GGG | 0.649495 | 4:-1313151 | None:intergenic |
| GAATGTGATTATAGCGTCCG+CGG | 0.652520 | 4:+1312528 | MsG0480018185.01.T01:CDS |
| ATGGTCCAAGAACCACAACT+GGG | 0.677277 | 4:-1312899 | None:intergenic |
| CGGTGACAGGAGAGGCTGTG+TGG | 0.679397 | 4:-1312349 | None:intergenic |
| TGTGAAACTGCTTTGCATCG+TGG | 0.688310 | 4:+1313089 | MsG0480018185.01.T01:CDS |
| AGAGCATTGCAAGAACACCA+AGG | 0.704040 | 4:+1312657 | MsG0480018185.01.T01:CDS |
| GTATTGTTATGGGAAGACAG+TGG | 0.831616 | 4:+1312818 | MsG0480018185.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTTATGATATATTCT+TGG | - | Chr4:1313937-1313956 | None:intergenic | 10.0% |
| !! | ATAAAAAAAAAAATACTATC+AGG | - | Chr4:1314673-1314692 | None:intergenic | 10.0% |
| !! | ATTAAGAAAAATTTATTGAT+TGG | + | Chr4:1313843-1313862 | MsG0480018185.01.T01:intron | 10.0% |
| !! | GTTAAGTTAAATAAATAATT+TGG | + | Chr4:1312121-1312140 | MsG0480018185.01.T01:intron | 10.0% |
| !!! | TTAAGAAAAATTTATTGATT+GGG | + | Chr4:1313844-1313863 | MsG0480018185.01.T01:intron | 10.0% |
| !! | ATTTGGTATAAGAAAAAAAA+TGG | - | Chr4:1311810-1311829 | None:intergenic | 15.0% |
| !! | CATAATTTAACAAATACTTT+GGG | + | Chr4:1314214-1314233 | MsG0480018185.01.T01:intron | 15.0% |
| !! | CATTTAGTTAATTAACATAA+GGG | + | Chr4:1313779-1313798 | MsG0480018185.01.T01:intron | 15.0% |
| !! | TAAGAAGAAATCAATTAATT+TGG | - | Chr4:1311827-1311846 | None:intergenic | 15.0% |
| !! | TGACTTAATTATAAATTCTA+AGG | - | Chr4:1313612-1313631 | None:intergenic | 15.0% |
| !! | TGTGAAATTAAATTTACAAA+TGG | - | Chr4:1312404-1312423 | None:intergenic | 15.0% |
| !!! | AGTATATTAGAACTTTTAAT+TGG | - | Chr4:1313818-1313837 | None:intergenic | 15.0% |
| !!! | ATATATCATAAATAATTTGC+TGG | + | Chr4:1313940-1313959 | MsG0480018185.01.T01:intron | 15.0% |
| !!! | CTTATTTAATCTTTTATTAC+TGG | - | Chr4:1314013-1314032 | None:intergenic | 15.0% |
| !! | AAATAATTGCTATGTTTATG+TGG | + | Chr4:1312059-1312078 | MsG0480018185.01.T01:intron | 20.0% |
| !! | AATGATTAATTCACCTTATA+AGG | - | Chr4:1312455-1312474 | None:intergenic | 20.0% |
| !! | AATGTTTATATGAAACTGTT+AGG | + | Chr4:1314398-1314417 | MsG0480018185.01.T01:CDS | 20.0% |
| !! | AGATGAACATATCATATATT+GGG | + | Chr4:1313900-1313919 | MsG0480018185.01.T01:intron | 20.0% |
| !! | ATAATGTGATAACTCAAATA+TGG | - | Chr4:1311737-1311756 | None:intergenic | 20.0% |
| !! | CGAAATATATATCTAGATTA+GGG | + | Chr4:1313219-1313238 | MsG0480018185.01.T01:intron | 20.0% |
| !! | GCATAATTTAACAAATACTT+TGG | + | Chr4:1314213-1314232 | MsG0480018185.01.T01:intron | 20.0% |
| !! | GCATTTAGTTAATTAACATA+AGG | + | Chr4:1313778-1313797 | MsG0480018185.01.T01:intron | 20.0% |
| !! | TAGATGAACATATCATATAT+TGG | + | Chr4:1313899-1313918 | MsG0480018185.01.T01:intron | 20.0% |
| !! | TGTTAATTAACTAAATGCTT+AGG | - | Chr4:1313776-1313795 | None:intergenic | 20.0% |
| !! | TTATAAAGAGTAACCTTATA+AGG | + | Chr4:1312439-1312458 | MsG0480018185.01.T01:intron | 20.0% |
| !!! | AAGGTGAATTAATCATTTTA+TGG | + | Chr4:1312458-1312477 | MsG0480018185.01.T01:intron | 20.0% |
| !!! | AAGTCTTAAATTAAGTTGTT+TGG | + | Chr4:1313391-1313410 | MsG0480018185.01.T01:intron | 20.0% |
| !!! | AATTATAAATTCTAAGGAGT+AGG | - | Chr4:1313606-1313625 | None:intergenic | 20.0% |
| !!! | ATTGAGTTTTTTTGTTTGTT+AGG | - | Chr4:1313514-1313533 | None:intergenic | 20.0% |
| !!! | CATTTTATGGAACATATAAT+AGG | + | Chr4:1312471-1312490 | MsG0480018185.01.T01:intron | 20.0% |
| !!! | CTTTTGATCTCAAAATTTTT+AGG | - | Chr4:1313374-1313393 | None:intergenic | 20.0% |
| !!! | GTGAATTTTTGTATAATTAG+AGG | + | Chr4:1312205-1312224 | MsG0480018185.01.T01:intron | 20.0% |
| !!! | TATTAGAACTTTTAATTGGA+TGG | - | Chr4:1313814-1313833 | None:intergenic | 20.0% |
| !!! | TTGAGTTTTTTTGTTTGTTA+GGG | - | Chr4:1313513-1313532 | None:intergenic | 20.0% |
| !!! | TTTTGATTTGAGAATATGTA+TGG | - | Chr4:1314340-1314359 | None:intergenic | 20.0% |
| ! | AAACAAAGAAAATTCCTTAC+AGG | - | Chr4:1312380-1312399 | None:intergenic | 25.0% |
| ! | AACAAAGAAAATTCCTTACA+GGG | - | Chr4:1312379-1312398 | None:intergenic | 25.0% |
| ! | ACAATCTTATGTTCATGTTA+AGG | + | Chr4:1313004-1313023 | MsG0480018185.01.T01:CDS | 25.0% |
| ! | ATGATATATTCTTGGTTAGT+AGG | - | Chr4:1313929-1313948 | None:intergenic | 25.0% |
| ! | ATGCTATAATATACTCTTGT+AGG | + | Chr4:1314489-1314508 | MsG0480018185.01.T01:three_prime_UTR | 25.0% |
| ! | ATTACATTAAGAGTCAAAGT+TGG | - | Chr4:1313579-1313598 | None:intergenic | 25.0% |
| ! | ATTCATCATAGCAATAGAAA+CGG | - | Chr4:1314128-1314147 | None:intergenic | 25.0% |
| ! | ATTGTACTAGCATTAATTGT+TGG | - | Chr4:1312933-1312952 | None:intergenic | 25.0% |
| ! | GCGAAATATATATCTAGATT+AGG | + | Chr4:1313218-1313237 | MsG0480018185.01.T01:intron | 25.0% |
| ! | TAGATGTACACATTGAATAA+GGG | - | Chr4:1313417-1313436 | None:intergenic | 25.0% |
| ! | TCTATTGCTATGATGAATTA+GGG | + | Chr4:1314130-1314149 | MsG0480018185.01.T01:intron | 25.0% |
| ! | TGGTATAAGAAAAAAAATGG+TGG | - | Chr4:1311807-1311826 | None:intergenic | 25.0% |
| ! | TTAGATGTACACATTGAATA+AGG | - | Chr4:1313418-1313437 | None:intergenic | 25.0% |
| ! | TTCATATAAACATTGCTTCA+CGG | - | Chr4:1314392-1314411 | None:intergenic | 25.0% |
| ! | TTCTATTGCTATGATGAATT+AGG | + | Chr4:1314129-1314148 | MsG0480018185.01.T01:intron | 25.0% |
| ! | TTTAAAGAAACATGCACTTA+AGG | - | Chr4:1313968-1313987 | None:intergenic | 25.0% |
| !! | AAAAGAAAATCAAGTGGATT+TGG | + | Chr4:1312866-1312885 | MsG0480018185.01.T01:CDS | 25.0% |
| !! | ACTTAAGTCAATGATTTTAC+AGG | + | Chr4:1313652-1313671 | MsG0480018185.01.T01:intron | 25.0% |
| !! | TTAATTGTTGGTTGAAGTAA+TGG | - | Chr4:1312921-1312940 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTTTGTGCAGAAC+TGG | + | Chr4:1312796-1312815 | MsG0480018185.01.T01:intron | 25.0% |
| !!! | GCTAAAATTTTGAAAGTGAA+AGG | - | Chr4:1314257-1314276 | None:intergenic | 25.0% |
| AAATCAAAAGCTGAAAGACT+TGG | + | Chr4:1314351-1314370 | MsG0480018185.01.T01:CDS | 30.0% | |
| AATATGTATGGTTTCACTCT+TGG | - | Chr4:1314328-1314347 | None:intergenic | 30.0% | |
| AATCAAAAGCTGAAAGACTT+GGG | + | Chr4:1314352-1314371 | MsG0480018185.01.T01:CDS | 30.0% | |
| ATGACTTCTCCTAAAAATAG+TGG | - | Chr4:1313720-1313739 | None:intergenic | 30.0% | |
| ATTGATTGGGTAAAGTAAAG+TGG | + | Chr4:1313857-1313876 | MsG0480018185.01.T01:intron | 30.0% | |
| CATAGCAAAAGAAAATCAAG+TGG | + | Chr4:1312860-1312879 | MsG0480018185.01.T01:CDS | 30.0% | |
| CATATAATAGGATGAGATGT+TGG | + | Chr4:1312483-1312502 | MsG0480018185.01.T01:intron | 30.0% | |
| GAATGATCACTTGAAAGAAT+TGG | + | Chr4:1312235-1312254 | MsG0480018185.01.T01:CDS | 30.0% | |
| GTAGTGAATTAATCAAACCT+TGG | - | Chr4:1312677-1312696 | None:intergenic | 30.0% | |
| TATGAAACAAATTCTGCTTC+TGG | + | Chr4:1313053-1313072 | MsG0480018185.01.T01:CDS | 30.0% | |
| TCATATAAACATTGCTTCAC+GGG | - | Chr4:1314391-1314410 | None:intergenic | 30.0% | |
| TCTATTCAATCTGTTGTTCA+TGG | + | Chr4:1312311-1312330 | MsG0480018185.01.T01:CDS | 30.0% | |
| TGTACATCTAACTTGATCTT+GGG | + | Chr4:1313427-1313446 | MsG0480018185.01.T01:intron | 30.0% | |
| TTAAGTGTCTTGCATATATG+AGG | + | Chr4:1314191-1314210 | MsG0480018185.01.T01:intron | 30.0% | |
| TTATGTTCATGTTAAGGATG+TGG | + | Chr4:1313010-1313029 | MsG0480018185.01.T01:CDS | 30.0% | |
| ! | ATTTTACAGGTAAAAACGAG+TGG | + | Chr4:1313665-1313684 | MsG0480018185.01.T01:intron | 30.0% |
| ! | TCTTTCAAGTGATCATTCTT+TGG | - | Chr4:1312233-1312252 | None:intergenic | 30.0% |
| ! | TGTTGCATTCACATAAGTTT+TGG | - | Chr4:1312985-1313004 | None:intergenic | 30.0% |
| ! | TTATTCTTTGCTATCTCCAT+TGG | + | Chr4:1311753-1311772 | MsG0480018185.01.T01:five_prime_UTR | 30.0% |
| ! | TTGTCGTTGATGAATCATAT+TGG | + | Chr4:1312626-1312645 | MsG0480018185.01.T01:CDS | 30.0% |
| !! | TGACTTGTTCATTCTAAACA+GGG | - | Chr4:1313473-1313492 | None:intergenic | 30.0% |
| !! | TTGACTTGTTCATTCTAAAC+AGG | - | Chr4:1313474-1313493 | None:intergenic | 30.0% |
| AAAATTCCTTACAGGGTTGT+CGG | - | Chr4:1312372-1312391 | None:intergenic | 35.0% | |
| AAACACCAATTGATGCAGAA+AGG | + | Chr4:1313537-1313556 | MsG0480018185.01.T01:intron | 35.0% | |
| AAATTTGCATACCTGGGTTT+CGG | - | Chr4:1311995-1312014 | None:intergenic | 35.0% | |
| ACAACATCTCTACTCGTATT+TGG | - | Chr4:1312610-1312629 | None:intergenic | 35.0% | |
| ATCGACAAAATTTGAACTCG+AGG | + | Chr4:1313284-1313303 | MsG0480018185.01.T01:intron | 35.0% | |
| CAACATCTCTACTCGTATTT+GGG | - | Chr4:1312609-1312628 | None:intergenic | 35.0% | |
| CACATACTCAAGTACCTTAA+TGG | + | Chr4:1312954-1312973 | MsG0480018185.01.T01:CDS | 35.0% | |
| CACTAGAAAAGAAAGACCAA+TGG | - | Chr4:1311772-1311791 | None:intergenic | 35.0% | |
| CGTGATAAATTTGCATACCT+GGG | - | Chr4:1312001-1312020 | None:intergenic | 35.0% | |
| GACTGTATCAAACACTTACT+TGG | - | Chr4:1313165-1313184 | None:intergenic | 35.0% | |
| GATCACTTGAAAGAATTGGA+AGG | + | Chr4:1312239-1312258 | MsG0480018185.01.T01:CDS | 35.0% | |
| GTAAGAAACTTAGTTGAGAG+AGG | - | Chr4:1313264-1313283 | None:intergenic | 35.0% | |
| GTACATCTAACTTGATCTTG+GGG | + | Chr4:1313428-1313447 | MsG0480018185.01.T01:intron | 35.0% | |
| GTATCAAACACTTACTTGGT+AGG | - | Chr4:1313161-1313180 | None:intergenic | 35.0% | |
| GTGTACATCTAACTTGATCT+TGG | + | Chr4:1313426-1313445 | MsG0480018185.01.T01:intron | 35.0% | |
| TAATCTATAGTCGCTGAGAT+AGG | - | Chr4:1314096-1314115 | None:intergenic | 35.0% | |
| TCGTGATAAATTTGCATACC+TGG | - | Chr4:1312002-1312021 | None:intergenic | 35.0% | |
| TGCAGAACTGGTATTGTTAT+GGG | + | Chr4:1312808-1312827 | MsG0480018185.01.T01:intron | 35.0% | |
| ! | AAATCAAGTGGATTTGGTTG+TGG | + | Chr4:1312872-1312891 | MsG0480018185.01.T01:CDS | 35.0% |
| ! | ACACACGATATTTGTTAACG+CGG | + | Chr4:1314056-1314075 | MsG0480018185.01.T01:intron | 35.0% |
| ! | GACTGATGAAGTGTTATCAT+AGG | - | Chr4:1311868-1311887 | None:intergenic | 35.0% |
| ! | TGGTGAGGTTGTTGAAATTT+TGG | + | Chr4:1313109-1313128 | MsG0480018185.01.T01:CDS | 35.0% |
| !! | CATTACCAGCCACTATTTTT+AGG | + | Chr4:1313708-1313727 | MsG0480018185.01.T01:intron | 35.0% |
| AAAGCTGAAAGACTTGGGAT+TGG | + | Chr4:1314357-1314376 | MsG0480018185.01.T01:CDS | 40.0% | |
| AACACTTACTTGGTAGGAAG+TGG | - | Chr4:1313155-1313174 | None:intergenic | 40.0% | |
| ACACTTACTTGGTAGGAAGT+GGG | - | Chr4:1313154-1313173 | None:intergenic | 40.0% | |
| ACCAATTGATGCAGAAAGGT+GGG | + | Chr4:1313541-1313560 | MsG0480018185.01.T01:intron | 40.0% | |
| AGAGAGGCTAACTTTGCATA+AGG | + | Chr4:1312268-1312287 | MsG0480018185.01.T01:CDS | 40.0% | |
| ATCGATTGGAACGGTCTATA+TGG | + | Chr4:1312582-1312601 | MsG0480018185.01.T01:CDS | 40.0% | |
| ATCTAACTTGATCTTGGGGT+GGG | + | Chr4:1313432-1313451 | MsG0480018185.01.T01:intron | 40.0% | |
| CTTCTCCTAAAAATAGTGGC+TGG | - | Chr4:1313716-1313735 | None:intergenic | 40.0% | |
| GAAAGAGGTTACACTGTTAG+AGG | + | Chr4:1311963-1311982 | MsG0480018185.01.T01:CDS | 40.0% | |
| GATAACACTTCATCAGTCTC+TGG | + | Chr4:1311870-1311889 | MsG0480018185.01.T01:CDS | 40.0% | |
| GGAAGATAGATGCTTCTTGT+TGG | - | Chr4:1311716-1311735 | None:intergenic | 40.0% | |
| GTATTGTTATGGGAAGACAG+TGG | + | Chr4:1312818-1312837 | MsG0480018185.01.T01:CDS | 40.0% | |
| GTCAAACTTCTCTTGGAAAG+AGG | + | Chr4:1311948-1311967 | MsG0480018185.01.T01:CDS | 40.0% | |
| GTGCAGAACTGGTATTGTTA+TGG | + | Chr4:1312807-1312826 | MsG0480018185.01.T01:intron | 40.0% | |
| GTGTGTGACAATACAATGGT+TGG | - | Chr4:1313745-1313764 | None:intergenic | 40.0% | |
| GTGTGTGTGTGACAATACAA+TGG | - | Chr4:1313749-1313768 | None:intergenic | 40.0% | |
| GTTAGGAGTCTACAAGAGAA+AGG | + | Chr4:1314415-1314434 | MsG0480018185.01.T01:CDS | 40.0% | |
| GTTGTGTTCACTTCATCGAT+TGG | + | Chr4:1312568-1312587 | MsG0480018185.01.T01:CDS | 40.0% | |
| TAAGCAGAGTCTTCTTGCAT+GGG | - | Chr4:1314457-1314476 | None:intergenic | 40.0% | |
| TGGGTACTCAGGAAAATACT+TGG | - | Chr4:1313135-1313154 | None:intergenic | 40.0% | |
| TTAAGCAGAGTCTTCTTGCA+TGG | - | Chr4:1314458-1314477 | None:intergenic | 40.0% | |
| TTCTTTGTTCCATTCACTGC+TGG | - | Chr4:1312511-1312530 | None:intergenic | 40.0% | |
| ! | CGATATTTGTTAACGCGGTT+TGG | + | Chr4:1314061-1314080 | MsG0480018185.01.T01:intron | 40.0% |
| ! | GATGAAGTGTTATCATAGGC+AGG | - | Chr4:1311864-1311883 | None:intergenic | 40.0% |
| ! | GTTCACTTCATCGATTGGAA+CGG | + | Chr4:1312573-1312592 | MsG0480018185.01.T01:CDS | 40.0% |
| !! | AAGTTTTGGCAGCACCATTA+AGG | - | Chr4:1312971-1312990 | None:intergenic | 40.0% |
| !! | GTCAAAGTTGGTATACCTAG+AGG | - | Chr4:1313567-1313586 | None:intergenic | 40.0% |
| !! | TTGGCTTGTCAAACTTCTCT+TGG | + | Chr4:1311941-1311960 | MsG0480018185.01.T01:CDS | 40.0% |
| !!! | GAACTCGAGGTTTTGTTTAC+AGG | + | Chr4:1313297-1313316 | MsG0480018185.01.T01:intron | 40.0% |
| AACACTTCATCAGTCTCTGG+TGG | + | Chr4:1311873-1311892 | MsG0480018185.01.T01:CDS | 45.0% | |
| AATGGTCCAAGAACCACAAC+TGG | - | Chr4:1312903-1312922 | None:intergenic | 45.0% | |
| AATTGGAAGGAGCAAGAGAG+AGG | + | Chr4:1312252-1312271 | MsG0480018185.01.T01:CDS | 45.0% | |
| AGTGGCTGAACAATCAGCAT+GGG | + | Chr4:1312836-1312855 | MsG0480018185.01.T01:CDS | 45.0% | |
| ATGGTCCAAGAACCACAACT+GGG | - | Chr4:1312902-1312921 | None:intergenic | 45.0% | |
| CACCAATTGATGCAGAAAGG+TGG | + | Chr4:1313540-1313559 | MsG0480018185.01.T01:intron | 45.0% | |
| CATCTAACTTGATCTTGGGG+TGG | + | Chr4:1313431-1313450 | MsG0480018185.01.T01:intron | 45.0% | |
| CTTAGTTGAGAGAGGAGACT+TGG | - | Chr4:1313256-1313275 | None:intergenic | 45.0% | |
| GAATGTGATTATAGCGTCCG+CGG | + | Chr4:1312528-1312547 | MsG0480018185.01.T01:CDS | 45.0% | |
| GTCGCTGAGATAGGTACAAT+TGG | - | Chr4:1314087-1314106 | None:intergenic | 45.0% | |
| TCTAACTTGATCTTGGGGTG+GGG | + | Chr4:1313433-1313452 | MsG0480018185.01.T01:intron | 45.0% | |
| TCTGTTGTTCATGGTTGCCA+TGG | + | Chr4:1312320-1312339 | MsG0480018185.01.T01:CDS | 45.0% | |
| TCTTCTTGCATGGGAGGAAT+AGG | - | Chr4:1314448-1314467 | None:intergenic | 45.0% | |
| TGTGAAACTGCTTTGCATCG+TGG | + | Chr4:1313089-1313108 | MsG0480018185.01.T01:CDS | 45.0% | |
| !! | AGAGCATTGCAAGAACACCA+AGG | + | Chr4:1312657-1312676 | MsG0480018185.01.T01:CDS | 45.0% |
| !! | AAAAATTAAAATATGATAAA+AGG | - | Chr4:1314591-1314610 | None:intergenic | 5.0% |
| !! | AATATTAAGATTAATTAATT+AGG | + | Chr4:1312758-1312777 | MsG0480018185.01.T01:intron | 5.0% |
| !!! | ATATATATAATTTTTTTTGA+AGG | - | Chr4:1314624-1314643 | None:intergenic | 5.0% |
| !!! | TTTTTAATTTAATTATGTTA+TGG | + | Chr4:1313194-1313213 | MsG0480018185.01.T01:intron | 5.0% |
| AACTGCTTTGCATCGTGGTG+AGG | + | Chr4:1313094-1313113 | MsG0480018185.01.T01:CDS | 50.0% | |
| ATGTTGGAGCCAGCAGTGAA+TGG | + | Chr4:1312499-1312518 | MsG0480018185.01.T01:CDS | 50.0% | |
| CAGTGGCTGAACAATCAGCA+TGG | + | Chr4:1312835-1312854 | MsG0480018185.01.T01:CDS | 50.0% | |
| CTTGCATGGGAGGAATAGGA+AGG | - | Chr4:1314444-1314463 | None:intergenic | 50.0% | |
| GACCAAATCGTGTGTGTCAC+CGG | + | Chr4:1311897-1311916 | MsG0480018185.01.T01:CDS | 50.0% | |
| GCCCACCTTTCTGCATCAAT+TGG | - | Chr4:1313545-1313564 | None:intergenic | 50.0% | |
| GTGAACCCAGTTGTGGTTCT+TGG | + | Chr4:1312894-1312913 | MsG0480018185.01.T01:CDS | 50.0% | |
| TTGCATACCTGGGTTTCGGA+CGG | - | Chr4:1311991-1312010 | None:intergenic | 50.0% | |
| TTGGTAGGAAGTGGGTACTC+AGG | - | Chr4:1313146-1313165 | None:intergenic | 50.0% | |
| AACTTGATCTTGGGGTGGGG+TGG | + | Chr4:1313436-1313455 | MsG0480018185.01.T01:intron | 55.0% | |
| ACTTGATCTTGGGGTGGGGT+GGG | + | Chr4:1313437-1313456 | MsG0480018185.01.T01:intron | 55.0% | |
| AGGCTGTGTGGAACACACCA+TGG | - | Chr4:1312340-1312359 | None:intergenic | 55.0% | |
| ATGCAGAAAGGTGGGCCTCT+AGG | + | Chr4:1313549-1313568 | MsG0480018185.01.T01:intron | 55.0% | |
| CACCGGTGACACACACGATT+TGG | - | Chr4:1311902-1311921 | None:intergenic | 55.0% | |
| CTGTCACCGACAACCCTGTA+AGG | + | Chr4:1312363-1312382 | MsG0480018185.01.T01:intron | 55.0% | |
| CTTACAGGGTTGTCGGTGAC+AGG | - | Chr4:1312365-1312384 | None:intergenic | 55.0% | |
| GCAGAGTCTTCTTGCATGGG+AGG | - | Chr4:1314454-1314473 | None:intergenic | 55.0% | |
| GGTTGTGGTGAACCCAGTTG+TGG | + | Chr4:1312887-1312906 | MsG0480018185.01.T01:CDS | 55.0% | |
| !! | CTGGCGGGTTCATAGCTTCT+TGG | + | Chr4:1311922-1311941 | MsG0480018185.01.T01:CDS | 55.0% |
| AGAGGAACCGTCCGAAACCC+AGG | + | Chr4:1311981-1312000 | MsG0480018185.01.T01:CDS | 60.0% | |
| AGCTATGAACCCGCCAGCAC+CGG | - | Chr4:1311919-1311938 | None:intergenic | 60.0% | |
| AGGGTTGTCGGTGACAGGAG+AGG | - | Chr4:1312360-1312379 | None:intergenic | 60.0% | |
| ATCGTGTGTGTCACCGGTGC+TGG | + | Chr4:1311903-1311922 | MsG0480018185.01.T01:CDS | 60.0% | |
| ! | GCGTCGCACTTTTGCTTCCG+CGG | - | Chr4:1312548-1312567 | None:intergenic | 60.0% |
| CGGTGACAGGAGAGGCTGTG+TGG | - | Chr4:1312352-1312371 | None:intergenic | 65.0% | |
| ! | GTGTGTGTCACCGGTGCTGG+CGG | + | Chr4:1311906-1311925 | MsG0480018185.01.T01:CDS | 65.0% |
| !! | TGTGTGTCACCGGTGCTGGC+GGG | + | Chr4:1311907-1311926 | MsG0480018185.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 1311704 | 1314731 | 1311704 | ID=MsG0480018185.01;Name=MsG0480018185.01 |
| Chr4 | mRNA | 1311704 | 1314731 | 1311704 | ID=MsG0480018185.01.T01;Parent=MsG0480018185.01;Name=MsG0480018185.01.T01;_AED=0.49;_eAED=0.49;_QI=154|1|0.83|1|0.8|0.66|6|230|336 |
| Chr4 | exon | 1311704 | 1312002 | 1311704 | ID=MsG0480018185.01.T01:exon:890;Parent=MsG0480018185.01.T01 |
| Chr4 | exon | 1312225 | 1312379 | 1312225 | ID=MsG0480018185.01.T01:exon:891;Parent=MsG0480018185.01.T01 |
| Chr4 | exon | 1312493 | 1312678 | 1312493 | ID=MsG0480018185.01.T01:exon:892;Parent=MsG0480018185.01.T01 |
| Chr4 | exon | 1312813 | 1313165 | 1312813 | ID=MsG0480018185.01.T01:exon:893;Parent=MsG0480018185.01.T01 |
| Chr4 | exon | 1314306 | 1314609 | 1314306 | ID=MsG0480018185.01.T01:exon:894;Parent=MsG0480018185.01.T01 |
| Chr4 | exon | 1314634 | 1314731 | 1314634 | ID=MsG0480018185.01.T01:exon:895;Parent=MsG0480018185.01.T01 |
| Chr4 | five_prime_UTR | 1311704 | 1311857 | 1311704 | ID=MsG0480018185.01.T01:five_prime_utr;Parent=MsG0480018185.01.T01 |
| Chr4 | CDS | 1311858 | 1312002 | 1311858 | ID=MsG0480018185.01.T01:cds;Parent=MsG0480018185.01.T01 |
| Chr4 | CDS | 1312225 | 1312379 | 1312225 | ID=MsG0480018185.01.T01:cds;Parent=MsG0480018185.01.T01 |
| Chr4 | CDS | 1312493 | 1312678 | 1312493 | ID=MsG0480018185.01.T01:cds;Parent=MsG0480018185.01.T01 |
| Chr4 | CDS | 1312813 | 1313165 | 1312813 | ID=MsG0480018185.01.T01:cds;Parent=MsG0480018185.01.T01 |
| Chr4 | CDS | 1314306 | 1314477 | 1314306 | ID=MsG0480018185.01.T01:cds;Parent=MsG0480018185.01.T01 |
| Chr4 | three_prime_UTR | 1314478 | 1314609 | 1314478 | ID=MsG0480018185.01.T01:three_prime_utr;Parent=MsG0480018185.01.T01 |
| Chr4 | three_prime_UTR | 1314634 | 1314731 | 1314634 | ID=MsG0480018185.01.T01:three_prime_utr;Parent=MsG0480018185.01.T01 |
| Gene Sequence |
| Protein sequence |
