Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007749.01.T01 | XP_003594610.1 | 96.324 | 408 | 15 | 0 | 1 | 408 | 135 | 542 | 0 | 816 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007749.01.T01 | Q9SVG3 | 66.667 | 408 | 131 | 3 | 1 | 408 | 137 | 539 | 0 | 540 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007749.01.T01 | G7IMM5 | 96.324 | 408 | 15 | 0 | 1 | 408 | 135 | 542 | 0.0 | 816 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048309.01 | MsG0280007749.01 | 0.825356 | 4.901350e-54 | 4.456949e-51 |
| MsG0280007749.01 | MsG0380016973.01 | 0.809749 | 1.621981e-50 | 9.602793e-48 |
| MsG0280007749.01 | MsG0480021986.01 | 0.805726 | 1.161342e-49 | 6.190208e-47 |
| MsG0280007749.01 | MsG0780040758.01 | 0.803132 | 4.033973e-49 | 2.011204e-46 |
| MsG0280007749.01 | MsG0880046342.01 | 0.834903 | 2.289950e-56 | 2.755537e-53 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0280007749.01 | MsG0280007759.01 | PPI |
| MsG0280007749.01 | MsG0280007756.01 | PPI |
| MsG0280007749.01 | MsG0280007760.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007749.01.T01 | MTR_2g031490 | 96.324 | 408 | 15 | 0 | 1 | 408 | 135 | 542 | 0.0 | 816 |
| MsG0280007749.01.T01 | MTR_2g031510 | 89.461 | 408 | 43 | 0 | 1 | 408 | 137 | 544 | 0.0 | 730 |
| MsG0280007749.01.T01 | MTR_4g094515 | 70.660 | 409 | 113 | 2 | 1 | 406 | 138 | 542 | 0.0 | 583 |
| MsG0280007749.01.T01 | MTR_4g094515 | 67.892 | 408 | 128 | 1 | 1 | 408 | 750 | 1154 | 0.0 | 565 |
| MsG0280007749.01.T01 | MTR_2g031590 | 63.260 | 411 | 144 | 3 | 1 | 407 | 128 | 535 | 0.0 | 514 |
| MsG0280007749.01.T01 | MTR_2g031560 | 61.330 | 406 | 150 | 4 | 1 | 404 | 123 | 523 | 4.01e-180 | 513 |
| MsG0280007749.01.T01 | MTR_4g094498 | 60.147 | 409 | 155 | 3 | 1 | 408 | 137 | 538 | 1.52e-167 | 481 |
| MsG0280007749.01.T01 | MTR_4g094418 | 52.451 | 408 | 190 | 3 | 1 | 404 | 28 | 435 | 3.06e-150 | 439 |
| MsG0280007749.01.T01 | MTR_2g031390 | 51.493 | 402 | 191 | 2 | 4 | 405 | 133 | 530 | 4.02e-148 | 431 |
| MsG0280007749.01.T01 | MTR_4g094488 | 55.172 | 406 | 173 | 4 | 3 | 402 | 133 | 535 | 4.02e-142 | 416 |
| MsG0280007749.01.T01 | MTR_4g094495 | 54.412 | 408 | 177 | 4 | 1 | 402 | 134 | 538 | 1.40e-141 | 415 |
| MsG0280007749.01.T01 | MTR_4g094520 | 52.239 | 402 | 187 | 3 | 4 | 405 | 137 | 533 | 4.42e-141 | 413 |
| MsG0280007749.01.T01 | MTR_4g094492 | 53.511 | 413 | 182 | 6 | 1 | 407 | 131 | 539 | 4.16e-140 | 410 |
| MsG0280007749.01.T01 | MTR_4g094478 | 53.317 | 407 | 181 | 5 | 3 | 404 | 133 | 535 | 3.51e-138 | 406 |
| MsG0280007749.01.T01 | MTR_4g094480 | 54.591 | 403 | 176 | 5 | 4 | 402 | 134 | 533 | 1.22e-137 | 404 |
| MsG0280007749.01.T01 | MTR_2g031420 | 52.985 | 402 | 182 | 4 | 3 | 404 | 133 | 527 | 3.54e-135 | 398 |
| MsG0280007749.01.T01 | MTR_3g009760 | 49.136 | 405 | 198 | 3 | 1 | 404 | 125 | 522 | 9.64e-135 | 396 |
| MsG0280007749.01.T01 | MTR_4g094518 | 51.358 | 405 | 193 | 2 | 1 | 405 | 131 | 531 | 7.28e-134 | 394 |
| MsG0280007749.01.T01 | MTR_3g009880 | 49.877 | 405 | 195 | 3 | 1 | 404 | 123 | 520 | 7.76e-134 | 394 |
| MsG0280007749.01.T01 | MTR_3g009820 | 47.901 | 405 | 203 | 3 | 1 | 404 | 125 | 522 | 6.16e-133 | 392 |
| MsG0280007749.01.T01 | MTR_4g091150 | 52.311 | 411 | 182 | 8 | 1 | 404 | 137 | 540 | 2.41e-132 | 391 |
| MsG0280007749.01.T01 | MTR_2g031460 | 51.621 | 401 | 183 | 6 | 3 | 401 | 133 | 524 | 3.13e-128 | 380 |
| MsG0280007749.01.T01 | MTR_4g088355 | 49.272 | 412 | 199 | 6 | 1 | 408 | 132 | 537 | 5.93e-128 | 380 |
| MsG0280007749.01.T01 | MTR_6g017205 | 50.370 | 405 | 193 | 5 | 1 | 402 | 125 | 524 | 2.44e-127 | 378 |
| MsG0280007749.01.T01 | MTR_4g091190 | 49.136 | 405 | 196 | 5 | 1 | 402 | 129 | 526 | 5.83e-127 | 377 |
| MsG0280007749.01.T01 | MTR_4g091200 | 49.754 | 406 | 194 | 6 | 1 | 402 | 125 | 524 | 6.23e-125 | 372 |
| MsG0280007749.01.T01 | MTR_4g091170 | 45.098 | 408 | 202 | 4 | 1 | 407 | 159 | 545 | 7.72e-125 | 373 |
| MsG0280007749.01.T01 | MTR_4g057990 | 48.762 | 404 | 198 | 4 | 1 | 402 | 124 | 520 | 3.23e-122 | 364 |
| MsG0280007749.01.T01 | MTR_2g023590 | 46.173 | 405 | 208 | 5 | 1 | 402 | 67 | 464 | 1.64e-114 | 343 |
| MsG0280007749.01.T01 | MTR_1g076830 | 40.831 | 409 | 224 | 8 | 1 | 401 | 134 | 532 | 3.40e-90 | 283 |
| MsG0280007749.01.T01 | MTR_2g031600 | 62.195 | 164 | 62 | 0 | 244 | 407 | 240 | 403 | 2.42e-69 | 224 |
| MsG0280007749.01.T01 | MTR_2g031600 | 82.759 | 116 | 20 | 0 | 1 | 116 | 129 | 244 | 6.15e-52 | 179 |
| MsG0280007749.01.T01 | MTR_3g009850 | 47.534 | 223 | 113 | 2 | 183 | 404 | 9 | 228 | 1.51e-65 | 209 |
| MsG0280007749.01.T01 | MTR_2g084370 | 45.370 | 108 | 37 | 2 | 1 | 108 | 4 | 89 | 1.01e-28 | 108 |
| MsG0280007749.01.T01 | MTR_2g084405 | 52.632 | 76 | 36 | 0 | 1 | 76 | 4 | 79 | 4.17e-21 | 88.2 |
| MsG0280007749.01.T01 | MTR_7g117710 | 48.780 | 82 | 39 | 2 | 104 | 184 | 30 | 109 | 7.06e-16 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007749.01.T01 | AT4G20840 | 66.667 | 408 | 131 | 3 | 1 | 408 | 137 | 539 | 0.0 | 540 |
| MsG0280007749.01.T01 | AT1G11770 | 64.128 | 407 | 141 | 3 | 1 | 407 | 131 | 532 | 0.0 | 515 |
| MsG0280007749.01.T01 | AT4G20830 | 65.931 | 408 | 134 | 3 | 1 | 408 | 138 | 540 | 1.59e-178 | 508 |
| MsG0280007749.01.T01 | AT4G20830 | 64.833 | 418 | 132 | 4 | 1 | 408 | 138 | 550 | 6.70e-177 | 505 |
| MsG0280007749.01.T01 | AT1G01980 | 64.078 | 412 | 138 | 5 | 1 | 407 | 131 | 537 | 8.44e-176 | 501 |
| MsG0280007749.01.T01 | AT1G30740 | 57.778 | 405 | 164 | 4 | 3 | 405 | 130 | 529 | 3.76e-154 | 446 |
| MsG0280007749.01.T01 | AT1G30740 | 57.778 | 405 | 164 | 4 | 3 | 405 | 133 | 532 | 4.47e-154 | 446 |
| MsG0280007749.01.T01 | AT1G30700 | 58.231 | 407 | 161 | 6 | 1 | 405 | 128 | 527 | 1.23e-152 | 442 |
| MsG0280007749.01.T01 | AT1G30710 | 55.231 | 411 | 163 | 7 | 1 | 404 | 132 | 528 | 1.62e-141 | 414 |
| MsG0280007749.01.T01 | AT1G34575 | 54.545 | 407 | 169 | 6 | 1 | 403 | 129 | 523 | 2.77e-141 | 413 |
| MsG0280007749.01.T01 | AT1G30720 | 52.970 | 404 | 183 | 4 | 1 | 403 | 128 | 525 | 2.02e-138 | 406 |
| MsG0280007749.01.T01 | AT1G30760 | 51.621 | 401 | 184 | 5 | 4 | 403 | 140 | 531 | 1.42e-136 | 401 |
| MsG0280007749.01.T01 | AT1G30760 | 51.621 | 401 | 184 | 5 | 4 | 403 | 158 | 549 | 1.89e-136 | 402 |
| MsG0280007749.01.T01 | AT1G26420 | 52.109 | 403 | 185 | 5 | 1 | 402 | 128 | 523 | 3.47e-135 | 398 |
| MsG0280007749.01.T01 | AT1G26380 | 51.605 | 405 | 188 | 4 | 1 | 404 | 128 | 525 | 2.04e-133 | 394 |
| MsG0280007749.01.T01 | AT5G44390 | 50.614 | 407 | 189 | 7 | 4 | 405 | 142 | 541 | 4.63e-132 | 390 |
| MsG0280007749.01.T01 | AT2G34790 | 49.500 | 400 | 194 | 4 | 4 | 403 | 138 | 529 | 5.66e-132 | 390 |
| MsG0280007749.01.T01 | AT1G30730 | 50.000 | 404 | 195 | 4 | 1 | 403 | 127 | 524 | 7.17e-132 | 389 |
| MsG0280007749.01.T01 | AT1G26390 | 51.733 | 404 | 187 | 4 | 1 | 402 | 128 | 525 | 9.77e-132 | 389 |
| MsG0280007749.01.T01 | AT4G20800 | 49.628 | 403 | 196 | 4 | 1 | 402 | 127 | 523 | 3.25e-129 | 382 |
| MsG0280007749.01.T01 | AT1G26400 | 50.614 | 407 | 192 | 5 | 1 | 407 | 128 | 525 | 3.43e-129 | 382 |
| MsG0280007749.01.T01 | AT1G26410 | 50.990 | 404 | 188 | 7 | 1 | 402 | 152 | 547 | 6.59e-128 | 380 |
| MsG0280007749.01.T01 | AT2G34810 | 51.338 | 411 | 188 | 6 | 1 | 404 | 134 | 539 | 3.71e-127 | 377 |
| MsG0280007749.01.T01 | AT5G44400 | 49.136 | 405 | 194 | 7 | 4 | 404 | 140 | 536 | 6.34e-127 | 377 |
| MsG0280007749.01.T01 | AT5G44360 | 48.649 | 407 | 194 | 6 | 1 | 404 | 136 | 530 | 2.77e-124 | 370 |
| MsG0280007749.01.T01 | AT5G44360 | 48.649 | 407 | 194 | 6 | 1 | 404 | 152 | 546 | 5.33e-124 | 370 |
| MsG0280007749.01.T01 | AT4G20820 | 48.139 | 403 | 191 | 5 | 3 | 402 | 137 | 524 | 1.24e-122 | 366 |
| MsG0280007749.01.T01 | AT4G20860 | 46.305 | 406 | 208 | 4 | 1 | 404 | 132 | 529 | 4.28e-122 | 364 |
| MsG0280007749.01.T01 | AT5G44440 | 47.317 | 410 | 196 | 7 | 3 | 404 | 132 | 529 | 1.39e-120 | 360 |
| MsG0280007749.01.T01 | AT5G44440 | 47.317 | 410 | 196 | 7 | 3 | 404 | 202 | 599 | 1.23e-119 | 360 |
| MsG0280007749.01.T01 | AT5G44380 | 50.123 | 405 | 192 | 6 | 4 | 405 | 143 | 540 | 2.48e-117 | 352 |
| MsG0280007749.01.T01 | AT5G44380 | 50.123 | 405 | 192 | 6 | 4 | 405 | 183 | 580 | 7.85e-117 | 352 |
| MsG0280007749.01.T01 | AT5G44410 | 46.845 | 412 | 191 | 8 | 3 | 404 | 136 | 529 | 6.64e-112 | 338 |
Find 72 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAAGAAGGTGAAGTTTA+TGG | 0.199712 | 2:+19985271 | MsG0280007749.01.T01:CDS |
| TTAACAGTCTTTGAAGTTAT+AGG | 0.211143 | 2:-19984668 | None:intergenic |
| ATAACTTCAAAGACTGTTAA+AGG | 0.235964 | 2:+19984671 | MsG0280007749.01.T01:CDS |
| TAGTTTATATAAGCACTTCT+AGG | 0.245752 | 2:-19985205 | None:intergenic |
| GGGGAAAGAATTTCCACTTT+TGG | 0.249093 | 2:+19984763 | MsG0280007749.01.T01:CDS |
| CGCGAAACCGGAGAGTCTTT+TGG | 0.255330 | 2:+19984868 | MsG0280007749.01.T01:CDS |
| AACTATAGAGACCTTGATAT+TGG | 0.277312 | 2:+19985223 | MsG0280007749.01.T01:CDS |
| GTTGGATTAATTCTGTTCTT+TGG | 0.277746 | 2:+19984816 | MsG0280007749.01.T01:CDS |
| AGCTATTTCAAAAGATGATT+TGG | 0.295908 | 2:+19984946 | MsG0280007749.01.T01:CDS |
| GGTACAATGTTGCGAAAATA+TGG | 0.301599 | 2:+19984359 | MsG0280007749.01.T01:CDS |
| AAATTCAATTCTCAGTGAAT+TGG | 0.308722 | 2:+19985095 | MsG0280007749.01.T01:CDS |
| CAAAGTATTCCTGTGCTTCC+TGG | 0.321969 | 2:+19985376 | MsG0280007749.01.T01:CDS |
| GATGAATTGGTAGGGATCTT+GGG | 0.330921 | 2:+19984743 | MsG0280007749.01.T01:CDS |
| TGATGAATTGGTAGGGATCT+TGG | 0.339124 | 2:+19984742 | MsG0280007749.01.T01:CDS |
| GATATTGGGATTAATAGTTT+TGG | 0.345357 | 2:+19985238 | MsG0280007749.01.T01:CDS |
| AAGATGATTTGGAAGGTATA+TGG | 0.345668 | 2:+19984957 | MsG0280007749.01.T01:CDS |
| TCTGTTGTTGCTTTGTTCCT+AGG | 0.347140 | 2:+19984713 | MsG0280007749.01.T01:CDS |
| AATCTTAATTCCGCGAGTTT+CGG | 0.347391 | 2:+19984896 | MsG0280007749.01.T01:CDS |
| ATGATTGAGTTGGGAAAAGT+TGG | 0.364762 | 2:+19984986 | MsG0280007749.01.T01:CDS |
| TGCTGAAATTGTTGATGTTA+AGG | 0.380932 | 2:+19984406 | MsG0280007749.01.T01:CDS |
| ACTATAGAGACCTTGATATT+GGG | 0.387577 | 2:+19985224 | MsG0280007749.01.T01:CDS |
| TCTCTAATCTAAGCCTTTCC+AGG | 0.393003 | 2:-19985394 | None:intergenic |
| CGCCATTTCCTCACCGTGCC+GGG | 0.394046 | 2:+19985062 | MsG0280007749.01.T01:CDS |
| AATGAAGTTGCTTATGTTCA+AGG | 0.394384 | 2:+19984218 | MsG0280007749.01.T01:CDS |
| CATTTCAGTGGTGGAGGGTA+TGG | 0.394735 | 2:+19984338 | MsG0280007749.01.T01:CDS |
| AAGGTTCATGGTTTCCCTGC+TGG | 0.400174 | 2:+19984287 | MsG0280007749.01.T01:CDS |
| CGGATTGTATTGAATTGAGT+TGG | 0.402933 | 2:+19984798 | MsG0280007749.01.T01:CDS |
| TTCCCGGCACGGTGAGGAAA+TGG | 0.410973 | 2:-19985064 | None:intergenic |
| TATGAGAAGAGTAAGGTTCA+TGG | 0.412694 | 2:+19984275 | MsG0280007749.01.T01:CDS |
| TAGAATTTATGAGAAGAGTA+AGG | 0.417739 | 2:+19984268 | MsG0280007749.01.T01:CDS |
| CTAGGATTCTTTGACACAAA+AGG | 0.421158 | 2:-19985187 | None:intergenic |
| GGTGGTGGTGGTGCTAGTTT+CGG | 0.428727 | 2:+19984482 | MsG0280007749.01.T01:CDS |
| GCTGAAATTGTTGATGTTAA+GGG | 0.428741 | 2:+19984407 | MsG0280007749.01.T01:CDS |
| CCTAGGTGGGGCTGATGAAT+TGG | 0.438986 | 2:+19984730 | MsG0280007749.01.T01:CDS |
| TTGCGCCGACAACGGATGAT+AGG | 0.442474 | 2:+19984621 | MsG0280007749.01.T01:CDS |
| CCCTCTGTTGCATTAGGTGC+TGG | 0.448567 | 2:-19985124 | None:intergenic |
| TTGTTGCTTTGTTCCTAGGT+GGG | 0.459610 | 2:+19984717 | MsG0280007749.01.T01:CDS |
| CTACTGATCTTGTTGTTCAA+TGG | 0.460205 | 2:+19984591 | MsG0280007749.01.T01:CDS |
| GGTGGTCATTTCAGTGGTGG+AGG | 0.461395 | 2:+19984332 | MsG0280007749.01.T01:CDS |
| TGTCCAACTGTTGGTGTTGG+TGG | 0.463587 | 2:+19984314 | MsG0280007749.01.T01:CDS |
| AACTATTAATCCCAATATCA+AGG | 0.482202 | 2:-19985234 | None:intergenic |
| TTCCTATCCAAAAGACTCTC+CGG | 0.486200 | 2:-19984875 | None:intergenic |
| TATTCCTGTGCTTCCTGGAA+AGG | 0.489055 | 2:+19985381 | MsG0280007749.01.T01:CDS |
| GTTTGTCCAACTGTTGGTGT+TGG | 0.496655 | 2:+19984311 | MsG0280007749.01.T01:CDS |
| GCTGGTGTTTGTCCAACTGT+TGG | 0.497658 | 2:+19984305 | MsG0280007749.01.T01:CDS |
| ACGCCATTTCCTCACCGTGC+CGG | 0.498557 | 2:+19985061 | MsG0280007749.01.T01:CDS |
| ACAGTTGGACAAACACCAGC+AGG | 0.517113 | 2:-19984302 | None:intergenic |
| TGTTGCTTTGTTCCTAGGTG+GGG | 0.525730 | 2:+19984718 | MsG0280007749.01.T01:CDS |
| GTGGTCATTTCAGTGGTGGA+GGG | 0.535936 | 2:+19984333 | MsG0280007749.01.T01:CDS |
| GTTGGTGGTCATTTCAGTGG+TGG | 0.536992 | 2:+19984329 | MsG0280007749.01.T01:CDS |
| TGGGCTATACGAGGTGGTGG+TGG | 0.540348 | 2:+19984470 | MsG0280007749.01.T01:CDS |
| GGAAATGGCGTTGCATCGGC+CGG | 0.546732 | 2:-19985049 | None:intergenic |
| GTTGTTGCTTTGTTCCTAGG+TGG | 0.551536 | 2:+19984716 | MsG0280007749.01.T01:CDS |
| AACAAATTCCCGGCACGGTG+AGG | 0.555492 | 2:-19985070 | None:intergenic |
| GTGAGGAAATGGCGTTGCAT+CGG | 0.560136 | 2:-19985053 | None:intergenic |
| TAAGCCTTTCCAGGAAGCAC+AGG | 0.565435 | 2:-19985385 | None:intergenic |
| ATTTCAAAAGATGATTTGGA+AGG | 0.571539 | 2:+19984950 | MsG0280007749.01.T01:CDS |
| GTTCAAGGTGGTGCTACACT+TGG | 0.580221 | 2:+19984233 | MsG0280007749.01.T01:CDS |
| GGTGTTGGTGGTCATTTCAG+TGG | 0.584562 | 2:+19984326 | MsG0280007749.01.T01:CDS |
| TGACCACCAACACCAACAGT+TGG | 0.585736 | 2:-19984317 | None:intergenic |
| GGTGGGGCTGATGAATTGGT+AGG | 0.590483 | 2:+19984734 | MsG0280007749.01.T01:CDS |
| ATGAATTGGTAGGGATCTTG+GGG | 0.597557 | 2:+19984744 | MsG0280007749.01.T01:CDS |
| AAAAGCCTATCATCCGTTGT+CGG | 0.601276 | 2:-19984626 | None:intergenic |
| AAATTGTTGATGTTAAGGGT+AGG | 0.605041 | 2:+19984411 | MsG0280007749.01.T01:CDS |
| CCAATTCATCAGCCCCACCT+AGG | 0.605757 | 2:-19984730 | None:intergenic |
| GCAACAAGTTGCGCCGACAA+CGG | 0.617059 | 2:+19984613 | MsG0280007749.01.T01:CDS |
| GTGGGGCTGATGAATTGGTA+GGG | 0.627285 | 2:+19984735 | MsG0280007749.01.T01:CDS |
| TTATACTGTTAAATTAGTAG+CGG | 0.627673 | 2:+19984517 | MsG0280007749.01.T01:CDS |
| CCAGCACCTAATGCAACAGA+GGG | 0.645750 | 2:+19985124 | MsG0280007749.01.T01:CDS |
| TCCAGCACCTAATGCAACAG+AGG | 0.667003 | 2:+19985123 | MsG0280007749.01.T01:CDS |
| CAGTTGGACAAACACCAGCA+GGG | 0.675522 | 2:-19984301 | None:intergenic |
| GAAGTTGCTTATGTTCAAGG+TGG | 0.769795 | 2:+19984221 | MsG0280007749.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTCAATAATAATTTTGAT+AGG | + | Chr2:19985302-19985321 | MsG0280007749.01.T01:CDS | 15.0% |
| !! | TTATACTGTTAAATTAGTAG+CGG | + | Chr2:19984517-19984536 | MsG0280007749.01.T01:CDS | 20.0% |
| !!! | CAATAATAATTTTGATAGGT+TGG | + | Chr2:19985306-19985325 | MsG0280007749.01.T01:CDS | 20.0% |
| ! | AAATTCAATTCTCAGTGAAT+TGG | + | Chr2:19985095-19985114 | MsG0280007749.01.T01:CDS | 25.0% |
| ! | AACTATTAATCCCAATATCA+AGG | - | Chr2:19985237-19985256 | None:intergenic | 25.0% |
| ! | ATAACTTCAAAGACTGTTAA+AGG | + | Chr2:19984671-19984690 | MsG0280007749.01.T01:CDS | 25.0% |
| ! | TAGAATTTATGAGAAGAGTA+AGG | + | Chr2:19984268-19984287 | MsG0280007749.01.T01:CDS | 25.0% |
| ! | TAGTTTATATAAGCACTTCT+AGG | - | Chr2:19985208-19985227 | None:intergenic | 25.0% |
| !! | AGCTATTTCAAAAGATGATT+TGG | + | Chr2:19984946-19984965 | MsG0280007749.01.T01:CDS | 25.0% |
| !! | ATTTCAAAAGATGATTTGGA+AGG | + | Chr2:19984950-19984969 | MsG0280007749.01.T01:CDS | 25.0% |
| !! | CTTTTGAATAGGAAATCAAT+GGG | + | Chr2:19984434-19984453 | MsG0280007749.01.T01:CDS | 25.0% |
| !! | GATATTGGGATTAATAGTTT+TGG | + | Chr2:19985238-19985257 | MsG0280007749.01.T01:CDS | 25.0% |
| !! | TTGAATTTTGAACAAATTCC+CGG | - | Chr2:19985083-19985102 | None:intergenic | 25.0% |
| !! | TTTTCGAATTGAGAAAACTT+TGG | + | Chr2:19984559-19984578 | MsG0280007749.01.T01:CDS | 25.0% |
| !!! | ACTTTTGGGATTGAAAAAAA+CGG | + | Chr2:19984778-19984797 | MsG0280007749.01.T01:CDS | 25.0% |
| !!! | TTAACAGTCTTTGAAGTTAT+AGG | - | Chr2:19984671-19984690 | None:intergenic | 25.0% |
| AAATTGTTGATGTTAAGGGT+AGG | + | Chr2:19984411-19984430 | MsG0280007749.01.T01:CDS | 30.0% | |
| AACTATAGAGACCTTGATAT+TGG | + | Chr2:19985223-19985242 | MsG0280007749.01.T01:CDS | 30.0% | |
| AATGAAGTTGCTTATGTTCA+AGG | + | Chr2:19984218-19984237 | MsG0280007749.01.T01:CDS | 30.0% | |
| ACTATAGAGACCTTGATATT+GGG | + | Chr2:19985224-19985243 | MsG0280007749.01.T01:CDS | 30.0% | |
| ATGGAAAAAGATGATTGAGT+TGG | + | Chr2:19984976-19984995 | MsG0280007749.01.T01:CDS | 30.0% | |
| CTCAATTCGAAAAACAGTAA+CGG | - | Chr2:19984552-19984571 | None:intergenic | 30.0% | |
| GCTGAAATTGTTGATGTTAA+GGG | + | Chr2:19984407-19984426 | MsG0280007749.01.T01:CDS | 30.0% | |
| GTTGGATTAATTCTGTTCTT+TGG | + | Chr2:19984816-19984835 | MsG0280007749.01.T01:CDS | 30.0% | |
| TCATTCCTGAAAAAGTTATC+AGG | - | Chr2:19985355-19985374 | None:intergenic | 30.0% | |
| TGCTGAAATTGTTGATGTTA+AGG | + | Chr2:19984406-19984425 | MsG0280007749.01.T01:CDS | 30.0% | |
| TGGAAAAAGATGATTGAGTT+GGG | + | Chr2:19984977-19984996 | MsG0280007749.01.T01:CDS | 30.0% | |
| TTTCAAGAAGGTGAAGTTTA+TGG | + | Chr2:19985271-19985290 | MsG0280007749.01.T01:CDS | 30.0% | |
| ! | AAGATGATTTGGAAGGTATA+TGG | + | Chr2:19984957-19984976 | MsG0280007749.01.T01:CDS | 30.0% |
| ! | GCTTTTGAATAGGAAATCAA+TGG | + | Chr2:19984433-19984452 | MsG0280007749.01.T01:CDS | 30.0% |
| !! | GATGCTGATGATTTTAACAA+TGG | + | Chr2:19984845-19984864 | MsG0280007749.01.T01:CDS | 30.0% |
| !! | TTGATCCTGATAACTTTTTC+AGG | + | Chr2:19985347-19985366 | MsG0280007749.01.T01:CDS | 30.0% |
| !!! | AATGGGTGAAGATCTTTTTT+GGG | + | Chr2:19984451-19984470 | MsG0280007749.01.T01:CDS | 30.0% |
| !!! | GTTTTTTTCAATCCCAAAAG+TGG | - | Chr2:19984779-19984798 | None:intergenic | 30.0% |
| AAAAAACCCTCTGTTGCATT+AGG | - | Chr2:19985133-19985152 | None:intergenic | 35.0% | |
| AATCTTAATTCCGCGAGTTT+CGG | + | Chr2:19984896-19984915 | MsG0280007749.01.T01:CDS | 35.0% | |
| CGGATTGTATTGAATTGAGT+TGG | + | Chr2:19984798-19984817 | MsG0280007749.01.T01:CDS | 35.0% | |
| CTAGGATTCTTTGACACAAA+AGG | - | Chr2:19985190-19985209 | None:intergenic | 35.0% | |
| GGTACAATGTTGCGAAAATA+TGG | + | Chr2:19984359-19984378 | MsG0280007749.01.T01:CDS | 35.0% | |
| TATGAGAAGAGTAAGGTTCA+TGG | + | Chr2:19984275-19984294 | MsG0280007749.01.T01:CDS | 35.0% | |
| ! | TTAAGGGTAGGCTTTTGAAT+AGG | + | Chr2:19984423-19984442 | MsG0280007749.01.T01:CDS | 35.0% |
| !! | ATGATTGAGTTGGGAAAAGT+TGG | + | Chr2:19984986-19985005 | MsG0280007749.01.T01:CDS | 35.0% |
| !! | CTACTGATCTTGTTGTTCAA+TGG | + | Chr2:19984591-19984610 | MsG0280007749.01.T01:CDS | 35.0% |
| !! | GGATTTGTTTTCAACCCTTA+TGG | + | Chr2:19985007-19985026 | MsG0280007749.01.T01:CDS | 35.0% |
| !! | GGGAAAGAATTTCCACTTTT+GGG | + | Chr2:19984764-19984783 | MsG0280007749.01.T01:CDS | 35.0% |
| !! | GGTAAGAACAGTTTTCAAGA+AGG | + | Chr2:19985259-19985278 | MsG0280007749.01.T01:CDS | 35.0% |
| !! | TTTGTTTTCAACCCTTATGG+TGG | + | Chr2:19985010-19985029 | MsG0280007749.01.T01:CDS | 35.0% |
| !!! | CAATGGGTGAAGATCTTTTT+TGG | + | Chr2:19984450-19984469 | MsG0280007749.01.T01:CDS | 35.0% |
| !!! | GGGTTTTTTGAATCAAGCTA+AGG | + | Chr2:19985144-19985163 | MsG0280007749.01.T01:CDS | 35.0% |
| AAAAGCCTATCATCCGTTGT+CGG | - | Chr2:19984629-19984648 | None:intergenic | 40.0% | |
| ATGAATTGGTAGGGATCTTG+GGG | + | Chr2:19984744-19984763 | MsG0280007749.01.T01:CDS | 40.0% | |
| CGAAAAACAGTAACGGTTTC+AGG | - | Chr2:19984545-19984564 | None:intergenic | 40.0% | |
| GAAGTTGCTTATGTTCAAGG+TGG | + | Chr2:19984221-19984240 | MsG0280007749.01.T01:CDS | 40.0% | |
| GATGAATTGGTAGGGATCTT+GGG | + | Chr2:19984743-19984762 | MsG0280007749.01.T01:CDS | 40.0% | |
| TGATGAATTGGTAGGGATCT+TGG | + | Chr2:19984742-19984761 | MsG0280007749.01.T01:CDS | 40.0% | |
| TGGAAAAATGGCTGAGATTC+CGG | + | Chr2:19985030-19985049 | MsG0280007749.01.T01:CDS | 40.0% | |
| TTCCTATCCAAAAGACTCTC+CGG | - | Chr2:19984878-19984897 | None:intergenic | 40.0% | |
| ! | CAACCCTTATGGTGGAAAAA+TGG | + | Chr2:19985018-19985037 | MsG0280007749.01.T01:CDS | 40.0% |
| ! | GGGGAAAGAATTTCCACTTT+TGG | + | Chr2:19984763-19984782 | MsG0280007749.01.T01:CDS | 40.0% |
| ! | TTTTAACAATGGCGCGAAAC+CGG | + | Chr2:19984856-19984875 | MsG0280007749.01.T01:CDS | 40.0% |
| ! | TTTTCTCTTACCGAAACTCG+CGG | - | Chr2:19984909-19984928 | None:intergenic | 40.0% |
| ! | TTTTGAACAAATTCCCGGCA+CGG | - | Chr2:19985078-19985097 | None:intergenic | 40.0% |
| !! | TCTGTTGTTGCTTTGTTCCT+AGG | + | Chr2:19984713-19984732 | MsG0280007749.01.T01:CDS | 40.0% |
| !! | TTGTTGCTTTGTTCCTAGGT+GGG | + | Chr2:19984717-19984736 | MsG0280007749.01.T01:CDS | 40.0% |
| !!! | CAGCCATTTTTCCACCATAA+GGG | - | Chr2:19985024-19985043 | None:intergenic | 40.0% |
| !!! | GATCTTTTTTGGGCTATACG+AGG | + | Chr2:19984461-19984480 | MsG0280007749.01.T01:CDS | 40.0% |
| !!! | TCAGCCATTTTTCCACCATA+AGG | - | Chr2:19985025-19985044 | None:intergenic | 40.0% |
| GTTTGTCCAACTGTTGGTGT+TGG | + | Chr2:19984311-19984330 | MsG0280007749.01.T01:CDS | 45.0% | |
| TATTCCTGTGCTTCCTGGAA+AGG | + | Chr2:19985381-19985400 | MsG0280007749.01.T01:CDS | 45.0% | |
| ! | AACCGGAGAGTCTTTTGGAT+AGG | + | Chr2:19984873-19984892 | MsG0280007749.01.T01:CDS | 45.0% |
| ! | CAAAGTATTCCTGTGCTTCC+TGG | + | Chr2:19985376-19985395 | MsG0280007749.01.T01:CDS | 45.0% |
| ! | CGGATGATAGGCTTTTCATG+AGG | + | Chr2:19984633-19984652 | MsG0280007749.01.T01:CDS | 45.0% |
| !! | GTTGTTGCTTTGTTCCTAGG+TGG | + | Chr2:19984716-19984735 | MsG0280007749.01.T01:CDS | 45.0% |
| !! | TGTTGCTTTGTTCCTAGGTG+GGG | + | Chr2:19984718-19984737 | MsG0280007749.01.T01:CDS | 45.0% |
| !!! | CTTTTTTGGGCTATACGAGG+TGG | + | Chr2:19984464-19984483 | MsG0280007749.01.T01:CDS | 45.0% |
| AAGGTTCATGGTTTCCCTGC+TGG | + | Chr2:19984287-19984306 | MsG0280007749.01.T01:CDS | 50.0% | |
| ACAGTTGGACAAACACCAGC+AGG | - | Chr2:19984305-19984324 | None:intergenic | 50.0% | |
| CAGTTGGACAAACACCAGCA+GGG | - | Chr2:19984304-19984323 | None:intergenic | 50.0% | |
| CCAGCACCTAATGCAACAGA+GGG | + | Chr2:19985124-19985143 | MsG0280007749.01.T01:CDS | 50.0% | |
| GCTGGTGTTTGTCCAACTGT+TGG | + | Chr2:19984305-19984324 | MsG0280007749.01.T01:CDS | 50.0% | |
| GTGAGGAAATGGCGTTGCAT+CGG | - | Chr2:19985056-19985075 | None:intergenic | 50.0% | |
| GTGGGGCTGATGAATTGGTA+GGG | + | Chr2:19984735-19984754 | MsG0280007749.01.T01:CDS | 50.0% | |
| TCCAGCACCTAATGCAACAG+AGG | + | Chr2:19985123-19985142 | MsG0280007749.01.T01:CDS | 50.0% | |
| TGACCACCAACACCAACAGT+TGG | - | Chr2:19984320-19984339 | None:intergenic | 50.0% | |
| ! | CATTTCAGTGGTGGAGGGTA+TGG | + | Chr2:19984338-19984357 | MsG0280007749.01.T01:CDS | 50.0% |
| ! | GTGGTCATTTCAGTGGTGGA+GGG | + | Chr2:19984333-19984352 | MsG0280007749.01.T01:CDS | 50.0% |
| ! | TAAGCCTTTCCAGGAAGCAC+AGG | - | Chr2:19985388-19985407 | None:intergenic | 50.0% |
| ! | TTTTGGGCTATACGAGGTGG+TGG | + | Chr2:19984467-19984486 | MsG0280007749.01.T01:CDS | 50.0% |
| !! | GGTGTTGGTGGTCATTTCAG+TGG | + | Chr2:19984326-19984345 | MsG0280007749.01.T01:CDS | 50.0% |
| !! | GTTCAAGGTGGTGCTACACT+TGG | + | Chr2:19984233-19984252 | MsG0280007749.01.T01:CDS | 50.0% |
| !! | GTTGGTGGTCATTTCAGTGG+TGG | + | Chr2:19984329-19984348 | MsG0280007749.01.T01:CDS | 50.0% |
| !! | TGTCCAACTGTTGGTGTTGG+TGG | + | Chr2:19984314-19984333 | MsG0280007749.01.T01:CDS | 50.0% |
| AACAAATTCCCGGCACGGTG+AGG | - | Chr2:19985073-19985092 | None:intergenic | 55.0% | |
| CCAATTCATCAGCCCCACCT+AGG | - | Chr2:19984733-19984752 | None:intergenic | 55.0% | |
| CCCTCTGTTGCATTAGGTGC+TGG | - | Chr2:19985127-19985146 | None:intergenic | 55.0% | |
| CCTAGGTGGGGCTGATGAAT+TGG | + | Chr2:19984730-19984749 | MsG0280007749.01.T01:CDS | 55.0% | |
| GGTGGGGCTGATGAATTGGT+AGG | + | Chr2:19984734-19984753 | MsG0280007749.01.T01:CDS | 55.0% | |
| GGTGGTCATTTCAGTGGTGG+AGG | + | Chr2:19984332-19984351 | MsG0280007749.01.T01:CDS | 55.0% | |
| ! | CGCGAAACCGGAGAGTCTTT+TGG | + | Chr2:19984868-19984887 | MsG0280007749.01.T01:CDS | 55.0% |
| ! | GCAACAAGTTGCGCCGACAA+CGG | + | Chr2:19984613-19984632 | MsG0280007749.01.T01:CDS | 55.0% |
| ! | TTGCGCCGACAACGGATGAT+AGG | + | Chr2:19984621-19984640 | MsG0280007749.01.T01:CDS | 55.0% |
| !! | GGTGGTGGTGGTGCTAGTTT+CGG | + | Chr2:19984482-19984501 | MsG0280007749.01.T01:CDS | 55.0% |
| ACGCCATTTCCTCACCGTGC+CGG | + | Chr2:19985061-19985080 | MsG0280007749.01.T01:CDS | 60.0% | |
| TTCCCGGCACGGTGAGGAAA+TGG | - | Chr2:19985067-19985086 | None:intergenic | 60.0% | |
| ! | GGAAATGGCGTTGCATCGGC+CGG | - | Chr2:19985052-19985071 | None:intergenic | 60.0% |
| ! | TGGGCTATACGAGGTGGTGG+TGG | + | Chr2:19984470-19984489 | MsG0280007749.01.T01:CDS | 60.0% |
| CGCCATTTCCTCACCGTGCC+GGG | + | Chr2:19985062-19985081 | MsG0280007749.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 19984182 | 19985408 | 19984182 | ID=MsG0280007749.01;Name=MsG0280007749.01 |
| Chr2 | mRNA | 19984182 | 19985408 | 19984182 | ID=MsG0280007749.01.T01;Parent=MsG0280007749.01;Name=MsG0280007749.01.T01;_AED=0.35;_eAED=0.35;_QI=0|-1|0|1|-1|1|1|0|408 |
| Chr2 | exon | 19984182 | 19985408 | 19984182 | ID=MsG0280007749.01.T01:exon:10329;Parent=MsG0280007749.01.T01 |
| Chr2 | CDS | 19984182 | 19985408 | 19984182 | ID=MsG0280007749.01.T01:cds;Parent=MsG0280007749.01.T01 |
| Gene Sequence |
| Protein sequence |
