AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007759.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007759.01.T01 MTR_2g031590 96.092 435 16 1 1 434 103 537 0.0 868
MsG0280007759.01.T01 MTR_2g031560 77.209 430 93 2 1 429 98 523 0.0 707
MsG0280007759.01.T01 MTR_2g031490 64.203 433 149 2 1 430 110 539 0.0 557
MsG0280007759.01.T01 MTR_2g031510 64.368 435 147 3 1 431 112 542 0.0 553
MsG0280007759.01.T01 MTR_4g094498 59.907 429 166 1 1 429 112 534 0.0 532
MsG0280007759.01.T01 MTR_4g094515 60.698 430 166 1 1 430 725 1151 3.50e-180 534
MsG0280007759.01.T01 MTR_4g094515 61.149 435 162 3 1 432 113 543 6.53e-177 525
MsG0280007759.01.T01 MTR_4g094418 54.649 441 190 4 1 434 3 440 2.64e-175 504
MsG0280007759.01.T01 MTR_2g031390 53.687 434 195 3 1 432 103 532 5.21e-173 496
MsG0280007759.01.T01 MTR_4g088355 54.756 431 187 4 1 428 107 532 3.56e-166 478
MsG0280007759.01.T01 MTR_4g091200 54.292 431 189 4 1 428 100 525 5.95e-165 474
MsG0280007759.01.T01 MTR_4g094488 54.524 431 193 2 1 428 106 536 8.48e-165 475
MsG0280007759.01.T01 MTR_3g009820 52.093 430 198 3 1 429 100 522 9.09e-165 474
MsG0280007759.01.T01 MTR_6g017205 54.756 431 187 4 1 428 100 525 1.76e-164 474
MsG0280007759.01.T01 MTR_3g009880 52.204 431 196 4 1 429 98 520 5.38e-164 472
MsG0280007759.01.T01 MTR_4g091190 53.132 431 192 4 1 428 104 527 7.88e-164 472
MsG0280007759.01.T01 MTR_4g091150 54.358 436 189 5 1 431 112 542 8.62e-164 472
MsG0280007759.01.T01 MTR_3g009760 52.425 433 192 4 1 429 100 522 9.87e-164 471
MsG0280007759.01.T01 MTR_4g057990 53.828 431 188 4 1 428 99 521 1.25e-163 471
MsG0280007759.01.T01 MTR_4g094495 53.596 431 197 2 1 428 109 539 1.75e-163 471
MsG0280007759.01.T01 MTR_4g094520 52.414 435 200 3 1 433 107 536 4.68e-162 468
MsG0280007759.01.T01 MTR_4g094480 54.292 431 192 3 1 428 106 534 6.22e-162 467
MsG0280007759.01.T01 MTR_4g094518 53.241 432 196 3 1 430 104 531 3.04e-161 465
MsG0280007759.01.T01 MTR_4g094478 54.005 437 196 3 1 434 106 540 3.27e-160 463
MsG0280007759.01.T01 MTR_2g031420 51.740 431 201 5 1 431 106 529 8.57e-156 451
MsG0280007759.01.T01 MTR_4g094492 51.954 435 199 5 1 429 106 536 1.04e-155 451
MsG0280007759.01.T01 MTR_4g091170 49.184 429 196 4 1 428 134 541 3.71e-155 451
MsG0280007759.01.T01 MTR_2g031460 51.732 433 200 5 1 433 106 529 3.38e-154 447
MsG0280007759.01.T01 MTR_2g023590 51.044 431 201 4 1 428 42 465 2.38e-153 443
MsG0280007759.01.T01 MTR_2g031600 92.814 167 12 0 268 434 239 405 4.25e-111 333
MsG0280007759.01.T01 MTR_2g031600 97.163 141 4 0 1 141 104 244 2.80e-82 259
MsG0280007759.01.T01 MTR_1g076830 41.553 438 242 6 1 432 107 536 2.66e-105 323
MsG0280007759.01.T01 MTR_3g009850 49.554 224 112 1 207 429 5 228 3.13e-74 232
MsG0280007759.01.T01 MTR_2g084370 43.243 111 41 2 23 133 1 89 6.03e-29 109
MsG0280007759.01.T01 MTR_2g084405 51.899 79 38 0 23 101 1 79 8.58e-23 92.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007759.01.T01 AT1G30700 65.668 434 138 6 1 430 101 527 0.0 560
MsG0280007759.01.T01 AT1G11770 56.481 432 179 3 1 430 106 530 5.63e-175 500
MsG0280007759.01.T01 AT4G20840 57.077 431 176 3 1 429 112 535 7.58e-175 500
MsG0280007759.01.T01 AT1G01980 58.581 437 167 5 1 430 106 535 2.38e-173 496
MsG0280007759.01.T01 AT1G30710 57.373 434 168 6 1 429 107 528 7.65e-173 495
MsG0280007759.01.T01 AT1G34575 55.916 431 174 5 1 427 104 522 6.11e-172 492
MsG0280007759.01.T01 AT1G26420 55.140 428 184 4 1 427 103 523 1.32e-166 479
MsG0280007759.01.T01 AT1G26400 54.695 426 186 3 1 426 103 521 2.13e-164 473
MsG0280007759.01.T01 AT1G26390 55.245 429 184 3 1 427 103 525 8.24e-164 472
MsG0280007759.01.T01 AT1G30720 53.972 428 190 3 1 427 103 524 1.31e-163 471
MsG0280007759.01.T01 AT4G20830 56.613 431 178 3 1 429 113 536 1.62e-163 471
MsG0280007759.01.T01 AT4G20830 56.322 435 181 3 1 433 113 540 3.56e-163 472
MsG0280007759.01.T01 AT1G26380 54.419 430 188 4 1 429 103 525 9.67e-163 469
MsG0280007759.01.T01 AT1G30730 53.037 428 194 3 1 427 102 523 1.13e-161 466
MsG0280007759.01.T01 AT1G30760 52.326 430 195 4 1 428 110 531 8.35e-160 462
MsG0280007759.01.T01 AT1G30760 52.326 430 195 4 1 428 128 549 1.04e-159 462
MsG0280007759.01.T01 AT1G26410 53.721 430 191 4 1 429 127 549 1.89e-159 461
MsG0280007759.01.T01 AT5G44390 51.716 437 197 7 1 430 112 541 2.86e-156 453
MsG0280007759.01.T01 AT1G30740 54.110 438 188 6 1 433 103 532 1.03e-155 451
MsG0280007759.01.T01 AT1G30740 54.110 438 188 6 1 433 106 535 1.39e-155 451
MsG0280007759.01.T01 AT5G44400 50.691 434 202 6 1 429 110 536 2.28e-153 446
MsG0280007759.01.T01 AT4G20800 51.636 428 200 3 1 427 102 523 6.50e-152 441
MsG0280007759.01.T01 AT2G34790 49.070 430 209 4 1 428 108 529 8.64e-151 439
MsG0280007759.01.T01 AT2G34810 50.575 435 205 4 1 429 109 539 3.09e-148 432
MsG0280007759.01.T01 AT4G20860 48.837 430 212 3 1 429 107 529 2.85e-147 430
MsG0280007759.01.T01 AT5G44360 49.769 432 203 5 1 429 110 530 6.04e-145 424
MsG0280007759.01.T01 AT5G44360 49.769 432 203 5 1 429 126 546 8.63e-145 424
MsG0280007759.01.T01 AT5G44380 50.688 436 203 6 1 431 113 541 4.38e-144 422
MsG0280007759.01.T01 AT5G44380 50.688 436 203 6 1 431 153 581 4.76e-144 423
MsG0280007759.01.T01 AT4G20820 49.070 430 201 7 1 427 110 524 1.06e-140 413
MsG0280007759.01.T01 AT5G44440 46.544 434 215 6 1 427 104 527 5.13e-135 399
MsG0280007759.01.T01 AT5G44440 46.544 434 215 6 1 427 174 597 5.97e-134 398
MsG0280007759.01.T01 AT5G44410 47.608 439 207 8 1 431 108 531 3.91e-128 381

Find 78 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAATGAAGGAAGAGTTTA+TGG 0.133600 2:+20157035 MsG0280007759.01.T01:CDS
CTCATAGAGCTGGAAATTTA+TGG 0.166565 2:+20156835 MsG0280007759.01.T01:CDS
ACAATGGTGCAAAGACTATT+AGG 0.202238 2:+20156460 MsG0280007759.01.T01:CDS
AGAGGCTTTCTTTAATTATA+AGG 0.230203 2:+20156974 MsG0280007759.01.T01:CDS
AAACTATGTCACTTGCATTT+TGG 0.230592 2:-20156347 None:intergenic
TCTTTCAGTTGATAATATTA+TGG 0.252446 2:+20156146 MsG0280007759.01.T01:CDS
TAATTATAAGGATCTTGATT+TGG 0.263816 2:+20156986 MsG0280007759.01.T01:CDS
CAAGTGACATAGTTTATAAT+TGG 0.268341 2:+20156355 MsG0280007759.01.T01:CDS
AGGAGGGTTTGGAAGGGATT+TGG 0.274713 2:+20156721 MsG0280007759.01.T01:CDS
CATTTAGGTGGTGGTGGATA+TGG 0.294111 2:+20156102 MsG0280007759.01.T01:CDS
TTGATCCTGACAATTTCTTT+AGG 0.305350 2:+20157111 MsG0280007759.01.T01:CDS
AATTATAAGGATCTTGATTT+GGG 0.321610 2:+20156987 MsG0280007759.01.T01:CDS
GTTGGTGTTGGAGGACATTT+AGG 0.335496 2:+20156087 MsG0280007759.01.T01:CDS
GCACAAATAATCAACGTTAA+TGG 0.338648 2:+20156171 MsG0280007759.01.T01:CDS
GAAAGCCTCTCTTGGATTCA+TGG 0.348545 2:-20156961 None:intergenic
ACCGATTTCGAAGGAGGGTT+TGG 0.349902 2:+20156710 MsG0280007759.01.T01:CDS
TCCAAACCCTCCTTCGAAAT+CGG 0.364194 2:-20156711 None:intergenic
TTGATAATGACCTATTCATT+AGG 0.367845 2:+20156397 MsG0280007759.01.T01:CDS
GGTAACATGATGAGAAAATA+TGG 0.369499 2:+20156123 MsG0280007759.01.T01:CDS
GAACTATTTGAAAAGAAAAT+CGG 0.380478 2:+20156674 MsG0280007759.01.T01:CDS
ATTTCCTCAATTGGGTTTGA+AGG 0.382891 2:+20156545 MsG0280007759.01.T01:CDS
GATTTGGGAATTAATCATAA+TGG 0.383034 2:+20157002 MsG0280007759.01.T01:CDS
AGGTTCAATATCAAGCAAAT+TGG 0.392754 2:+20156859 MsG0280007759.01.T01:CDS
GTTGTAAATGTTACACAAAA+TGG 0.404678 2:+20156432 MsG0280007759.01.T01:CDS
CAATAATAAGCCTAATGAAT+AGG 0.423030 2:-20156407 None:intergenic
ATATTATATTTCAATCCATA+TGG 0.427967 2:+20156771 MsG0280007759.01.T01:CDS
CAATGGTGCAAAGACTATTA+GGG 0.429921 2:+20156461 MsG0280007759.01.T01:CDS
TAATTAAAGAAAGCCTCTCT+TGG 0.432560 2:-20156969 None:intergenic
CTTTCCTTCAAACCCAATTG+AGG 0.442877 2:-20156549 None:intergenic
TGGGCTATTAAAGGTGGTGG+TGG 0.445066 2:+20156234 MsG0280007759.01.T01:CDS
GTGATTGCATTGAAACAAGT+TGG 0.451363 2:+20156571 MsG0280007759.01.T01:CDS
CATAAATTTCCAGCTCTATG+AGG 0.454241 2:-20156834 None:intergenic
TTGGAAGAAGATGATTGAGT+TGG 0.464636 2:+20156740 MsG0280007759.01.T01:CDS
ATTGCTTGATAGAAAGTCAA+TGG 0.468705 2:+20156197 MsG0280007759.01.T01:CDS
GATGTTGCTGATCATTACAT+AGG 0.469569 2:+20156897 MsG0280007759.01.T01:CDS
TTTCCAGCTCTATGAGGAAA+AGG 0.470840 2:-20156828 None:intergenic
CTTGGATTCATGGACACAAA+AGG 0.473881 2:-20156951 None:intergenic
TCATTCCTAAAGAAATTGTC+AGG 0.475717 2:-20157116 None:intergenic
AAATGGAACTTCAGCTACAT+AGG 0.477639 2:-20155911 None:intergenic
GGAAAAGGTGTATCTGTTGA+TGG 0.483240 2:-20156813 None:intergenic
TTCAAATAGTTCAAAGATTG+CGG 0.487908 2:-20156663 None:intergenic
AATAGGTCATTATCAATAGT+TGG 0.489739 2:-20156390 None:intergenic
GGAGGACATTTAGGTGGTGG+TGG 0.491204 2:+20156096 MsG0280007759.01.T01:CDS
TGTAGAAAATGAAACAGCTT+GGG 0.491403 2:+20155975 MsG0280007759.01.T01:CDS
GTTTGTCCTACCGTTGGTGT+TGG 0.497022 2:+20156075 MsG0280007759.01.T01:CDS
GCCGGTGTTTGTCCTACCGT+TGG 0.501779 2:+20156069 MsG0280007759.01.T01:CDS
GGTGGTGGTGGAGCTAGCTT+TGG 0.502190 2:+20156246 MsG0280007759.01.T01:CDS
TTCTTGCTATGAGGAAGAGT+AGG 0.509752 2:-20157149 None:intergenic
GAAACAGCTTGGGTTCAAAC+CGG 0.514552 2:+20155985 MsG0280007759.01.T01:CDS
ATGTAGAAAATGAAACAGCT+TGG 0.524631 2:+20155974 MsG0280007759.01.T01:CDS
ATTTCGAAGGAGGGTTTGGA+AGG 0.525138 2:+20156714 MsG0280007759.01.T01:CDS
GTTGGAGGACATTTAGGTGG+TGG 0.526862 2:+20156093 MsG0280007759.01.T01:CDS
GGTAAGAATAGTTACAATGA+AGG 0.530117 2:+20157023 MsG0280007759.01.T01:CDS
TGTCCTACCGTTGGTGTTGG+AGG 0.545497 2:+20156078 MsG0280007759.01.T01:CDS
CAAATGAAAATTAGAAGTGG+TGG 0.548948 2:+20155868 None:intergenic
TTGCTTGATAGAAAGTCAAT+GGG 0.553447 2:+20156198 MsG0280007759.01.T01:CDS
TCTTGCTATGAGGAAGAGTA+GGG 0.554233 2:-20157148 None:intergenic
TTATATTTCAATCCATATGG+TGG 0.557035 2:+20156774 MsG0280007759.01.T01:CDS
CAAGCAAATTGGAACAAAGC+AGG 0.557287 2:+20156870 MsG0280007759.01.T01:CDS
GTTCAAACCGGTGCGCAACT+CGG 0.564627 2:+20155997 MsG0280007759.01.T01:CDS
CTATCAAGCAAAATCTCGAC+CGG 0.570018 2:-20156636 None:intergenic
AAAGAAACCGATTTCGAAGG+AGG 0.571118 2:+20156704 MsG0280007759.01.T01:CDS
ACACAAAATGGTACAAACAA+TGG 0.576751 2:+20156444 MsG0280007759.01.T01:CDS
AAGTGGTGGACATGACTATG+AGG 0.577784 2:+20155882 MsG0280007759.01.T01:CDS
AAGTTCACCGAGTTGCGCAC+CGG 0.578304 2:-20156004 None:intergenic
AAGAAACCGATTTCGAAGGA+GGG 0.590143 2:+20156705 MsG0280007759.01.T01:CDS
TGTAAAGAAACCGATTTCGA+AGG 0.590231 2:+20156701 MsG0280007759.01.T01:CDS
ACGGTAGGACAAACACCGGC+CGG 0.607648 2:-20156066 None:intergenic
GGTGTTGGAGGACATTTAGG+TGG 0.609164 2:+20156090 MsG0280007759.01.T01:CDS
TGTGTCCATGAATCCAAGAG+AGG 0.609183 2:+20156956 MsG0280007759.01.T01:CDS
TTGCAAATGAAAATTAGAAG+TGG 0.622495 2:+20155865 None:intergenic
TTTCGAAGGAGGGTTTGGAA+GGG 0.625184 2:+20156715 MsG0280007759.01.T01:CDS
TAGAGCTGGAAATTTATGGA+AGG 0.631425 2:+20156839 MsG0280007759.01.T01:CDS
TAATATCAATATTACAACAC+CGG 0.649527 2:+20156617 MsG0280007759.01.T01:CDS
ACCAACGGTAGGACAAACAC+CGG 0.657719 2:-20156070 None:intergenic
TAAATGTCCTCCAACACCAA+CGG 0.660004 2:-20156085 None:intergenic
TGTCCTCCAACACCAACGGT+AGG 0.664176 2:-20156081 None:intergenic
AGTGGTGGACATGACTATGA+GGG 0.725724 2:+20155883 MsG0280007759.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATATTTCAATCCATA+TGG + Chr2:20156771-20156790 MsG0280007759.01.T01:CDS 15.0%
!!! AACATATCTAAGATAAAAAA+TGG - Chr2:20155931-20155950 None:intergenic 15.0%
!! AATGAAAAATTTCCTCAATT+GGG + Chr2:20156537-20156556 MsG0280007759.01.T01:CDS 20.0%
!! AATTATAAGGATCTTGATTT+GGG + Chr2:20156987-20157006 MsG0280007759.01.T01:CDS 20.0%
!! GAACTATTTGAAAAGAAAAT+CGG + Chr2:20156674-20156693 MsG0280007759.01.T01:CDS 20.0%
!! TAATATCAATATTACAACAC+CGG + Chr2:20156617-20156636 MsG0280007759.01.T01:CDS 20.0%
!! TAATTATAAGGATCTTGATT+TGG + Chr2:20156986-20157005 MsG0280007759.01.T01:CDS 20.0%
!!! ACTTTTATATCTTTATTCCT+TGG + Chr2:20156486-20156505 MsG0280007759.01.T01:CDS 20.0%
!!! TAAGGATAATTTTGATAGAT+TGG + Chr2:20157070-20157089 MsG0280007759.01.T01:CDS 20.0%
!!! TAGTAACTGTTTTTCAAATT+AGG + Chr2:20156313-20156332 MsG0280007759.01.T01:CDS 20.0%
!!! TCTTTCAGTTGATAATATTA+TGG + Chr2:20156146-20156165 MsG0280007759.01.T01:CDS 20.0%
!!! TTTTCAAATTAGGAAAACTT+TGG + Chr2:20156323-20156342 MsG0280007759.01.T01:CDS 20.0%
! AACGAAAAAAGTAAAGTTCA+TGG + Chr2:20156039-20156058 MsG0280007759.01.T01:CDS 25.0%
! AATAGGTCATTATCAATAGT+TGG - Chr2:20156393-20156412 None:intergenic 25.0%
! AGAGGCTTTCTTTAATTATA+AGG + Chr2:20156974-20156993 MsG0280007759.01.T01:CDS 25.0%
! CAAGTGACATAGTTTATAAT+TGG + Chr2:20156355-20156374 MsG0280007759.01.T01:CDS 25.0%
! CAATAATAAGCCTAATGAAT+AGG - Chr2:20156410-20156429 None:intergenic 25.0%
! GAATGAAAAATTTCCTCAAT+TGG + Chr2:20156536-20156555 MsG0280007759.01.T01:CDS 25.0%
! GATTTGGGAATTAATCATAA+TGG + Chr2:20157002-20157021 MsG0280007759.01.T01:CDS 25.0%
! GTTGTAAATGTTACACAAAA+TGG + Chr2:20156432-20156451 MsG0280007759.01.T01:CDS 25.0%
! TGAAAAACAGTTACTATCTT+AGG - Chr2:20156309-20156328 None:intergenic 25.0%
! TTATATTTCAATCCATATGG+TGG + Chr2:20156774-20156793 MsG0280007759.01.T01:CDS 25.0%
! TTCAAATAGTTCAAAGATTG+CGG - Chr2:20156666-20156685 None:intergenic 25.0%
!! TTATGGAGTTGAGTATTTTA+AGG + Chr2:20157052-20157071 MsG0280007759.01.T01:CDS 25.0%
!!! TTGATAATGACCTATTCATT+AGG + Chr2:20156397-20156416 MsG0280007759.01.T01:CDS 25.0%
ACACAAAATGGTACAAACAA+TGG + Chr2:20156444-20156463 MsG0280007759.01.T01:CDS 30.0%
AGGTTCAATATCAAGCAAAT+TGG + Chr2:20156859-20156878 MsG0280007759.01.T01:CDS 30.0%
ATGTAGAAAATGAAACAGCT+TGG + Chr2:20155974-20155993 MsG0280007759.01.T01:CDS 30.0%
ATTGCTTGATAGAAAGTCAA+TGG + Chr2:20156197-20156216 MsG0280007759.01.T01:CDS 30.0%
GCACAAATAATCAACGTTAA+TGG + Chr2:20156171-20156190 MsG0280007759.01.T01:CDS 30.0%
GGTAACATGATGAGAAAATA+TGG + Chr2:20156123-20156142 MsG0280007759.01.T01:CDS 30.0%
GGTAAGAATAGTTACAATGA+AGG + Chr2:20157023-20157042 MsG0280007759.01.T01:CDS 30.0%
TAATTAAAGAAAGCCTCTCT+TGG - Chr2:20156972-20156991 None:intergenic 30.0%
TACAATGAAGGAAGAGTTTA+TGG + Chr2:20157035-20157054 MsG0280007759.01.T01:CDS 30.0%
TCATTCCTAAAGAAATTGTC+AGG - Chr2:20157119-20157138 None:intergenic 30.0%
TGTAGAAAATGAAACAGCTT+GGG + Chr2:20155975-20155994 MsG0280007759.01.T01:CDS 30.0%
TTGATCCTGACAATTTCTTT+AGG + Chr2:20157111-20157130 MsG0280007759.01.T01:CDS 30.0%
TTGCTTGATAGAAAGTCAAT+GGG + Chr2:20156198-20156217 MsG0280007759.01.T01:CDS 30.0%
! AAGTAAAGTTCATGGTTTTC+CGG + Chr2:20156047-20156066 MsG0280007759.01.T01:CDS 30.0%
!! AAACTATGTCACTTGCATTT+TGG - Chr2:20156350-20156369 None:intergenic 30.0%
!! GGATAATTTTGATAGATTGG+TGG + Chr2:20157073-20157092 MsG0280007759.01.T01:CDS 30.0%
!!! AATGGGAGAAGATCTTTTTT+GGG + Chr2:20156215-20156234 MsG0280007759.01.T01:CDS 30.0%
!!! GATCTTTTTTGGGCTATTAA+AGG + Chr2:20156225-20156244 MsG0280007759.01.T01:CDS 30.0%
AAATGGAACTTCAGCTACAT+AGG - Chr2:20155914-20155933 None:intergenic 35.0%
ACAATGGTGCAAAGACTATT+AGG + Chr2:20156460-20156479 MsG0280007759.01.T01:CDS 35.0%
ATTTCCTCAATTGGGTTTGA+AGG + Chr2:20156545-20156564 MsG0280007759.01.T01:CDS 35.0%
CAATGGTGCAAAGACTATTA+GGG + Chr2:20156461-20156480 MsG0280007759.01.T01:CDS 35.0%
CATAAATTTCCAGCTCTATG+AGG - Chr2:20156837-20156856 None:intergenic 35.0%
CTCATAGAGCTGGAAATTTA+TGG + Chr2:20156835-20156854 MsG0280007759.01.T01:CDS 35.0%
GATGTTGCTGATCATTACAT+AGG + Chr2:20156897-20156916 MsG0280007759.01.T01:CDS 35.0%
GTGATTGCATTGAAACAAGT+TGG + Chr2:20156571-20156590 MsG0280007759.01.T01:CDS 35.0%
TAGAGCTGGAAATTTATGGA+AGG + Chr2:20156839-20156858 MsG0280007759.01.T01:CDS 35.0%
TTGGAAGAAGATGATTGAGT+TGG + Chr2:20156740-20156759 MsG0280007759.01.T01:CDS 35.0%
! CAAGAGTTTTTGAATCACCA+AGG - Chr2:20156506-20156525 None:intergenic 35.0%
! CAATCCATATGGTGGAAAAA+TGG + Chr2:20156782-20156801 MsG0280007759.01.T01:CDS 35.0%
! TGTAAAGAAACCGATTTCGA+AGG + Chr2:20156701-20156720 MsG0280007759.01.T01:CDS 35.0%
!!! CAATGGGAGAAGATCTTTTT+TGG + Chr2:20156214-20156233 MsG0280007759.01.T01:CDS 35.0%
!!! CTTTTTTGGGCTATTAAAGG+TGG + Chr2:20156228-20156247 MsG0280007759.01.T01:CDS 35.0%
!!! GGCTTCAATCAGTTTTGTTT+TGG + Chr2:20156592-20156611 MsG0280007759.01.T01:CDS 35.0%
CAAGCAAATTGGAACAAAGC+AGG + Chr2:20156870-20156889 MsG0280007759.01.T01:CDS 40.0%
CTATCAAGCAAAATCTCGAC+CGG - Chr2:20156639-20156658 None:intergenic 40.0%
CTTGGATTCATGGACACAAA+AGG - Chr2:20156954-20156973 None:intergenic 40.0%
CTTTCCTTCAAACCCAATTG+AGG - Chr2:20156552-20156571 None:intergenic 40.0%
TAAATGTCCTCCAACACCAA+CGG - Chr2:20156088-20156107 None:intergenic 40.0%
TTTCCAGCTCTATGAGGAAA+AGG - Chr2:20156831-20156850 None:intergenic 40.0%
! AAAGAAACCGATTTCGAAGG+AGG + Chr2:20156704-20156723 MsG0280007759.01.T01:CDS 40.0%
! AAGAAACCGATTTCGAAGGA+GGG + Chr2:20156705-20156724 MsG0280007759.01.T01:CDS 40.0%
! GGAAAAGGTGTATCTGTTGA+TGG - Chr2:20156816-20156835 None:intergenic 40.0%
! TCTTGCTATGAGGAAGAGTA+GGG - Chr2:20157151-20157170 None:intergenic 40.0%
! TTCTTGCTATGAGGAAGAGT+AGG - Chr2:20157152-20157171 None:intergenic 40.0%
! TTTTGGGCTATTAAAGGTGG+TGG + Chr2:20156231-20156250 MsG0280007759.01.T01:CDS 40.0%
!!! TCAGCCATTTTTCCACCATA+TGG - Chr2:20156789-20156808 None:intergenic 40.0%
ATTTCGAAGGAGGGTTTGGA+AGG + Chr2:20156714-20156733 MsG0280007759.01.T01:CDS 45.0%
GAAACAGCTTGGGTTCAAAC+CGG + Chr2:20155985-20156004 MsG0280007759.01.T01:CDS 45.0%
GAAAGCCTCTCTTGGATTCA+TGG - Chr2:20156964-20156983 None:intergenic 45.0%
TCCAAACCCTCCTTCGAAAT+CGG - Chr2:20156714-20156733 None:intergenic 45.0%
TGTGTCCATGAATCCAAGAG+AGG + Chr2:20156956-20156975 MsG0280007759.01.T01:CDS 45.0%
TTTCGAAGGAGGGTTTGGAA+GGG + Chr2:20156715-20156734 MsG0280007759.01.T01:CDS 45.0%
! AAAGTTCATGGTTTTCCGGC+CGG + Chr2:20156051-20156070 MsG0280007759.01.T01:CDS 45.0%
! ACACCTTTTCCTCATAGAGC+TGG + Chr2:20156825-20156844 MsG0280007759.01.T01:CDS 45.0%
!! AAGTGGTGGACATGACTATG+AGG + Chr2:20155882-20155901 MsG0280007759.01.T01:CDS 45.0%
!! AGTGGTGGACATGACTATGA+GGG + Chr2:20155883-20155902 MsG0280007759.01.T01:CDS 45.0%
!! CATTTAGGTGGTGGTGGATA+TGG + Chr2:20156102-20156121 MsG0280007759.01.T01:CDS 45.0%
!! GTTGGTGTTGGAGGACATTT+AGG + Chr2:20156087-20156106 MsG0280007759.01.T01:CDS 45.0%
ACCAACGGTAGGACAAACAC+CGG - Chr2:20156073-20156092 None:intergenic 50.0%
AGGAGGGTTTGGAAGGGATT+TGG + Chr2:20156721-20156740 MsG0280007759.01.T01:CDS 50.0%
GTTGGAGGACATTTAGGTGG+TGG + Chr2:20156093-20156112 MsG0280007759.01.T01:CDS 50.0%
GTTTGTCCTACCGTTGGTGT+TGG + Chr2:20156075-20156094 MsG0280007759.01.T01:CDS 50.0%
! ACCGATTTCGAAGGAGGGTT+TGG + Chr2:20156710-20156729 MsG0280007759.01.T01:CDS 50.0%
! GGTGTTGGAGGACATTTAGG+TGG + Chr2:20156090-20156109 MsG0280007759.01.T01:CDS 50.0%
! TGGGCTATTAAAGGTGGTGG+TGG + Chr2:20156234-20156253 MsG0280007759.01.T01:CDS 50.0%
AAGTTCACCGAGTTGCGCAC+CGG - Chr2:20156007-20156026 None:intergenic 55.0%
GTTCAAACCGGTGCGCAACT+CGG + Chr2:20155997-20156016 MsG0280007759.01.T01:CDS 55.0%
TGTCCTCCAACACCAACGGT+AGG - Chr2:20156084-20156103 None:intergenic 55.0%
! GGAGGACATTTAGGTGGTGG+TGG + Chr2:20156096-20156115 MsG0280007759.01.T01:CDS 55.0%
!! TGTCCTACCGTTGGTGTTGG+AGG + Chr2:20156078-20156097 MsG0280007759.01.T01:CDS 55.0%
ACGGTAGGACAAACACCGGC+CGG - Chr2:20156069-20156088 None:intergenic 60.0%
GCCGGTGTTTGTCCTACCGT+TGG + Chr2:20156069-20156088 MsG0280007759.01.T01:CDS 60.0%
!! GGTGGTGGTGGAGCTAGCTT+TGG + Chr2:20156246-20156265 MsG0280007759.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 20155871 20157175 20155871 ID=MsG0280007759.01;Name=MsG0280007759.01
Chr2 mRNA 20155871 20157175 20155871 ID=MsG0280007759.01.T01;Parent=MsG0280007759.01;Name=MsG0280007759.01.T01;_AED=0.48;_eAED=0.48;_QI=0|-1|0|1|-1|1|1|0|434
Chr2 exon 20155871 20157175 20155871 ID=MsG0280007759.01.T01:exon:10400;Parent=MsG0280007759.01.T01
Chr2 CDS 20155871 20157175 20155871 ID=MsG0280007759.01.T01:cds;Parent=MsG0280007759.01.T01
Gene Sequence

>MsG0280007759.01.T01

ATGAAAATTAGAAGTGGTGGACATGACTATGAGGGTGTTTCCTATGTAGCTGAAGTTCCATTTTTTATCTTAGATATGTTCAATCTAAGATCAATTGAAGTTGATGTAGAAAATGAAACAGCTTGGGTTCAAACCGGTGCGCAACTCGGTGAACTTTACTATAGAATCAACGAAAAAAGTAAAGTTCATGGTTTTCCGGCCGGTGTTTGTCCTACCGTTGGTGTTGGAGGACATTTAGGTGGTGGTGGATATGGTAACATGATGAGAAAATATGGTCTTTCAGTTGATAATATTATGGATGCACAAATAATCAACGTTAATGGTAGATTGCTTGATAGAAAGTCAATGGGAGAAGATCTTTTTTGGGCTATTAAAGGTGGTGGTGGAGCTAGCTTTGGTGTTGTTCTTTCTTACAAAATCAAGTTAGTTAAAGTTCCTAAGATAGTAACTGTTTTTCAAATTAGGAAAACTTTGGACCAAAATGCAAGTGACATAGTTTATAATTGGCAACATGTAGCACCAACTATTGATAATGACCTATTCATTAGGCTTATTATTGATGTTGTAAATGTTACACAAAATGGTACAAACAATGGTGCAAAGACTATTAGGGCTACTTTTATATCTTTATTCCTTGGTGATTCAAAAACTCTTGTTTCACTAATGAATGAAAAATTTCCTCAATTGGGTTTGAAGGAAAGTGATTGCATTGAAACAAGTTGGCTTCAATCAGTTTTGTTTTGGACTAATATCAATATTACAACACCGGTCGAGATTTTGCTTGATAGACAACCGCAATCTTTGAACTATTTGAAAAGAAAATCGGATTATGTAAAGAAACCGATTTCGAAGGAGGGTTTGGAAGGGATTTGGAAGAAGATGATTGAGTTGGAAGATGCAATATTATATTTCAATCCATATGGTGGAAAAATGGCTGAGATTCCATCAACAGATACACCTTTTCCTCATAGAGCTGGAAATTTATGGAAGGTTCAATATCAAGCAAATTGGAACAAAGCAGGTAAAGATGTTGCTGATCATTACATAGGTTTGACTAGAAAACTTCACAAATATATGACTCCTTTTGTGTCCATGAATCCAAGAGAGGCTTTCTTTAATTATAAGGATCTTGATTTGGGAATTAATCATAATGGTAAGAATAGTTACAATGAAGGAAGAGTTTATGGAGTTGAGTATTTTAAGGATAATTTTGATAGATTGGTGGAAATTAAGACAAAAGTTGATCCTGACAATTTCTTTAGGAATGAACAAAGCATCCCTACTCTTCCTCATAGCAAGAATTAG

Protein sequence

>MsG0280007759.01.T01

MKIRSGGHDYEGVSYVAEVPFFILDMFNLRSIEVDVENETAWVQTGAQLGELYYRINEKSKVHGFPAGVCPTVGVGGHLGGGGYGNMMRKYGLSVDNIMDAQIINVNGRLLDRKSMGEDLFWAIKGGGGASFGVVLSYKIKLVKVPKIVTVFQIRKTLDQNASDIVYNWQHVAPTIDNDLFIRLIIDVVNVTQNGTNNGAKTIRATFISLFLGDSKTLVSLMNEKFPQLGLKESDCIETSWLQSVLFWTNINITTPVEILLDRQPQSLNYLKRKSDYVKKPISKEGLEGIWKKMIELEDAILYFNPYGGKMAEIPSTDTPFPHRAGNLWKVQYQANWNKAGKDVADHYIGLTRKLHKYMTPFVSMNPREAFFNYKDLDLGINHNGKNSYNEGRVYGVEYFKDNFDRLVEIKTKVDPDNFFRNEQSIPTLPHSKN*