Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008007.01.T01 | XP_013463259.1 | 93.226 | 310 | 11 | 3 | 1 | 302 | 3 | 310 | 1.20E-163 | 468 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008007.01.T01 | O04133 | 71.519 | 316 | 61 | 12 | 1 | 315 | 3 | 290 | 4.11E-115 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008007.01.T01 | A0A072V6M6 | 93.226 | 310 | 11 | 3 | 1 | 302 | 3 | 310 | 5.72e-164 | 468 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0280008007.01 | MsG0380015834.01 | 0.810928 | 9.032240e-51 | 5.516544e-48 |
| MsG0280008007.01 | MsG0380015862.01 | 0.841209 | 5.459192e-58 | 7.963635e-55 |
| MsG0280008007.01 | MsG0580029205.01 | 0.866671 | 2.403632e-65 | 8.169090e-62 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008007.01.T01 | MTR_2g436900 | 93.226 | 310 | 11 | 3 | 1 | 302 | 3 | 310 | 1.45e-167 | 468 |
| MsG0280008007.01.T01 | MTR_4g119780 | 50.579 | 259 | 92 | 11 | 1 | 256 | 1 | 226 | 9.57e-59 | 189 |
| MsG0280008007.01.T01 | MTR_2g036030 | 68.116 | 138 | 42 | 2 | 3 | 139 | 5 | 141 | 2.10e-57 | 182 |
| MsG0280008007.01.T01 | MTR_2g036000 | 56.522 | 138 | 57 | 3 | 3 | 139 | 5 | 140 | 1.39e-42 | 144 |
| MsG0280008007.01.T01 | MTR_2g033730 | 51.773 | 141 | 62 | 4 | 1 | 139 | 6 | 142 | 4.44e-35 | 130 |
| MsG0280008007.01.T01 | MTR_7g084680 | 28.704 | 216 | 121 | 10 | 6 | 204 | 7 | 206 | 1.25e-14 | 72.8 |
| MsG0280008007.01.T01 | MTR_2g064120 | 53.086 | 81 | 33 | 4 | 65 | 141 | 6 | 85 | 1.12e-12 | 67.4 |
| MsG0280008007.01.T01 | MTR_1g008950 | 34.375 | 96 | 53 | 2 | 5 | 100 | 5 | 90 | 7.55e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008007.01.T01 | AT1G09070 | 46.341 | 287 | 123 | 12 | 1 | 266 | 1 | 277 | 2.73e-56 | 185 |
| MsG0280008007.01.T01 | AT3G16510 | 34.125 | 337 | 138 | 15 | 1 | 267 | 1 | 323 | 2.44e-35 | 131 |
| MsG0280008007.01.T01 | AT4G15755 | 36.909 | 317 | 151 | 14 | 1 | 297 | 1 | 288 | 4.55e-31 | 118 |
| MsG0280008007.01.T01 | AT3G62780 | 38.372 | 172 | 91 | 6 | 1 | 164 | 1 | 165 | 1.22e-25 | 104 |
| MsG0280008007.01.T01 | AT4G15740 | 37.415 | 147 | 80 | 4 | 1 | 136 | 36 | 181 | 1.86e-20 | 91.7 |
| MsG0280008007.01.T01 | AT4G15740 | 36.242 | 149 | 84 | 3 | 6 | 144 | 232 | 379 | 1.02e-15 | 77.8 |
Find 141 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGGAATGGCGGCGGCGGC+TGG | 0.202302 | 2:-24221485 | MsG0280008007.01.T01:CDS |
| GTGGCGGTTTGTGGGTTTAA+TGG | 0.212880 | 2:+24221881 | None:intergenic |
| GGGTTGCTTGGAGGTGCTTT+AGG | 0.240010 | 2:-24221167 | MsG0280008007.01.T01:CDS |
| GAAGCCTAAGAAGAATAAAA+TGG | 0.248904 | 2:-24221207 | MsG0280008007.01.T01:CDS |
| ACCCCTCCAGAGATTCTTTC+CGG | 0.264767 | 2:-24221673 | MsG0280008007.01.T01:CDS |
| TTTCCGGCAGGTTAATTATC+AGG | 0.270298 | 2:-24221657 | MsG0280008007.01.T01:CDS |
| TTGTGGGTGGTGGCGGTTTG+TGG | 0.304493 | 2:+24221872 | None:intergenic |
| TGGCTACCCGCCACAACAAC+CGG | 0.307584 | 2:-24221339 | MsG0280008007.01.T01:CDS |
| CCACCGGCGGCGGCTGGTTA+TGG | 0.307820 | 2:-24221389 | MsG0280008007.01.T01:CDS |
| TTAAACCTCTCTTATAAATT+CGG | 0.324095 | 2:-24221602 | MsG0280008007.01.T01:CDS |
| CTGGAATGGCGGCGGCGGCT+GGG | 0.325439 | 2:-24221484 | MsG0280008007.01.T01:CDS |
| CAGCCTCAACAACCGGGTTA+TGG | 0.338567 | 2:-24221425 | MsG0280008007.01.T01:CDS |
| GGATATGATGTTGAGTTCTA+AGG | 0.343477 | 2:+24221976 | None:intergenic |
| CCACCACAACAACCGGGTTA+TGG | 0.351827 | 2:-24221278 | MsG0280008007.01.T01:CDS |
| TCCTCCTCAGCCTCAACAAC+CGG | 0.354573 | 2:-24221432 | MsG0280008007.01.T01:CDS |
| TGGATACCCGCCGCAACAAC+CGG | 0.355756 | 2:-24221258 | MsG0280008007.01.T01:CDS |
| TGGATATCCACCACAACAAC+CGG | 0.356096 | 2:-24221285 | MsG0280008007.01.T01:CDS |
| TGTGGGTGGTGGCGGTTTGT+GGG | 0.361014 | 2:+24221873 | None:intergenic |
| CCTCAAGAGAGAGACGATTC+TGG | 0.365120 | 2:+24221777 | None:intergenic |
| CCGCCGCAACAACCGGGTTA+TGG | 0.374757 | 2:-24221251 | MsG0280008007.01.T01:CDS |
| ATGGGAATGGGATTGGGAGC+AGG | 0.376126 | 2:-24221188 | MsG0280008007.01.T01:CDS |
| CCAGCCGCCGCCGGTGGTGC+AGG | 0.376153 | 2:+24221395 | None:intergenic |
| TGCTTGGAGGTGCTTTAGGT+GGG | 0.393585 | 2:-24221163 | MsG0280008007.01.T01:CDS |
| CCGCCACAACAACCAGGTTA+TGG | 0.397143 | 2:-24221305 | MsG0280008007.01.T01:CDS |
| GAATTTGACGGGGAAGTTCC+AGG | 0.405610 | 2:+24221823 | None:intergenic |
| CCAGCCGCCGCCGCCATTCC+AGG | 0.411108 | 2:+24221485 | None:intergenic |
| GCTTTAGGTGGGATGTTGAT+TGG | 0.419049 | 2:-24221152 | MsG0280008007.01.T01:CDS |
| TACGCCGTCGTTTCAATCTC+CGG | 0.420527 | 2:-24221908 | MsG0280008007.01.T01:CDS |
| TTAGGCTTCTGTGCTTGTGC+AGG | 0.424781 | 2:+24221221 | None:intergenic |
| GAATAAAATGGGAATGGGAT+TGG | 0.427962 | 2:-24221195 | MsG0280008007.01.T01:CDS |
| GGCGGCGGCTGGGTCTAGCT+CGG | 0.430254 | 2:-24221474 | MsG0280008007.01.T01:CDS |
| TATCAGGTTAGAACATCGTC+AGG | 0.432589 | 2:-24221641 | MsG0280008007.01.T01:CDS |
| CCACCGGCTCAACCAGGTTA+TGG | 0.433001 | 2:-24221359 | MsG0280008007.01.T01:CDS |
| AATAAAATGGGAATGGGATT+GGG | 0.434305 | 2:-24221194 | MsG0280008007.01.T01:CDS |
| TGGGAATGGGATTGGGAGCA+GGG | 0.437268 | 2:-24221187 | MsG0280008007.01.T01:CDS |
| TCATTGATTGTGAATTTGAC+GGG | 0.439588 | 2:+24221812 | None:intergenic |
| TTGGGAGCAGGGTTGCTTGG+AGG | 0.442444 | 2:-24221176 | MsG0280008007.01.T01:CDS |
| TTGCTTGGAGGTGCTTTAGG+TGG | 0.443341 | 2:-24221164 | MsG0280008007.01.T01:CDS |
| CCTGCACCACCGGCGGCGGC+TGG | 0.449115 | 2:-24221395 | MsG0280008007.01.T01:CDS |
| AACCTGCCGGAAAGAATCTC+TGG | 0.449587 | 2:+24221667 | None:intergenic |
| GATGCTTCTTCTTATGATGC+TGG | 0.453950 | 2:-24221116 | MsG0280008007.01.T01:CDS |
| TATGATGCTGGATATGATGC+TGG | 0.454207 | 2:-24221104 | MsG0280008007.01.T01:CDS |
| TTCCACCATCACGGTGTTTG+TGG | 0.454449 | 2:+24221855 | None:intergenic |
| ATCACGGTGTTTGTGGGTGG+TGG | 0.459906 | 2:+24221862 | None:intergenic |
| ATCATTGATTGTGAATTTGA+CGG | 0.462096 | 2:+24221811 | None:intergenic |
| TGTTGAGGCTGAGGAGGATA+AGG | 0.465076 | 2:+24221437 | None:intergenic |
| CCAAGCTCCGGCGATGAAAA+CGG | 0.466757 | 2:-24221570 | MsG0280008007.01.T01:CDS |
| GGATTGGGAGCAGGGTTGCT+TGG | 0.468164 | 2:-24221179 | MsG0280008007.01.T01:CDS |
| GGCTTCTGTGCTTGTGCAGG+TGG | 0.473167 | 2:+24221224 | None:intergenic |
| GACGGCGTAAACGTCCATCT+TGG | 0.477299 | 2:+24221922 | None:intergenic |
| AAGAAGAATAAAATGGGAAT+GGG | 0.478627 | 2:-24221200 | MsG0280008007.01.T01:CDS |
| TCCACCTGGAATGGCGGCGG+CGG | 0.480729 | 2:-24221489 | MsG0280008007.01.T01:CDS |
| TCCACCATCACGGTGTTTGT+GGG | 0.480812 | 2:+24221856 | None:intergenic |
| TAAGAAGAATAAAATGGGAA+TGG | 0.481478 | 2:-24221201 | MsG0280008007.01.T01:CDS |
| CTCCAGAGATTCTTTCCGGC+AGG | 0.482840 | 2:-24221669 | MsG0280008007.01.T01:CDS |
| AAGCCTAAGAAGAATAAAAT+GGG | 0.484691 | 2:-24221206 | MsG0280008007.01.T01:CDS |
| ACGGTGTTTGTGGGTGGTGG+CGG | 0.485179 | 2:+24221865 | None:intergenic |
| TGGATATCCACCTGCACCAC+CGG | 0.486261 | 2:-24221405 | MsG0280008007.01.T01:CDS |
| TCCACCTGCACCACCGGCGG+CGG | 0.496572 | 2:-24221399 | MsG0280008007.01.T01:CDS |
| CATAACCTGGTTGTTGTGGC+GGG | 0.499715 | 2:+24221306 | None:intergenic |
| CATGACCCGGTTGTTGTGGC+GGG | 0.508930 | 2:+24221333 | None:intergenic |
| GGCGAAACATGAACCGGTGA+AGG | 0.512149 | 2:-24221546 | MsG0280008007.01.T01:CDS |
| TAGCCATAACCTGGTTGAGC+CGG | 0.512295 | 2:+24221356 | None:intergenic |
| GGCTTATCCTCCACCTGGAA+TGG | 0.513753 | 2:-24221498 | MsG0280008007.01.T01:CDS |
| CCATAACCAGCCGCCGCCGG+TGG | 0.514414 | 2:+24221389 | None:intergenic |
| CCATGACCCGGTTGTTGTGG+CGG | 0.519102 | 2:+24221332 | None:intergenic |
| CATAACCCGGTTGTTGCGGC+GGG | 0.525094 | 2:+24221252 | None:intergenic |
| TATGATGCTGGCTTTGATGA+TGG | 0.529487 | 2:-24221092 | MsG0280008007.01.T01:CDS |
| AACGGCGGCGAAACATGAAC+CGG | 0.529923 | 2:-24221552 | MsG0280008007.01.T01:CDS |
| TAACCATGACCCGGTTGTTG+TGG | 0.533082 | 2:+24221329 | None:intergenic |
| CCATAACCCGGTTGTTGTGG+TGG | 0.535933 | 2:+24221278 | None:intergenic |
| ATGGTGGAACAAGCCCTACC+TGG | 0.540440 | 2:-24221841 | MsG0280008007.01.T01:CDS |
| CCCGGTTGTTGAGGCTGAGG+AGG | 0.540596 | 2:+24221431 | None:intergenic |
| TATCCATAACCCGGTTGTTG+TGG | 0.541105 | 2:+24221275 | None:intergenic |
| GCCGCCGCCGGTGGTGCAGG+TGG | 0.542739 | 2:+24221398 | None:intergenic |
| TATCCATAACCCGGTTGTTG+CGG | 0.545012 | 2:+24221248 | None:intergenic |
| CCATAACCTGGTTGTTGTGG+CGG | 0.545433 | 2:+24221305 | None:intergenic |
| CCATAACCTGGTTGAGCCGG+TGG | 0.549180 | 2:+24221359 | None:intergenic |
| ATCTCCGATCGTACCCTCTC+CGG | 0.551578 | 2:-24221746 | MsG0280008007.01.T01:CDS |
| GATATGAACCTTGCCGATCA+AGG | 0.553020 | 2:+24221718 | None:intergenic |
| CCGCCACAACAACCGGGTCA+TGG | 0.554002 | 2:-24221332 | MsG0280008007.01.T01:CDS |
| TAACCTGATAATTAACCTGC+CGG | 0.555852 | 2:+24221654 | None:intergenic |
| GGGTCTAGCTCGGTGCCGTA+TGG | 0.557568 | 2:-24221464 | MsG0280008007.01.T01:CDS |
| TATCCATAACCCGGTTGTTG+AGG | 0.566025 | 2:+24221422 | None:intergenic |
| TTTCACCGAATTTATAAGAG+AGG | 0.568603 | 2:+24221597 | None:intergenic |
| GCCGCCGCCATTCCAGGTGG+AGG | 0.568746 | 2:+24221491 | None:intergenic |
| CCATAACCCGGTTGTTGCGG+CGG | 0.571303 | 2:+24221251 | None:intergenic |
| TGACGGGGAAGTTCCAGGTA+GGG | 0.573282 | 2:+24221828 | None:intergenic |
| TAACCCGGTTGTTGAGGCTG+AGG | 0.573392 | 2:+24221428 | None:intergenic |
| GATCAAGGTATCGCCGGAGA+GGG | 0.575351 | 2:+24221733 | None:intergenic |
| TCCTCCACCTGGAATGGCGG+CGG | 0.576302 | 2:-24221492 | MsG0280008007.01.T01:CDS |
| CTACCATAACCAGCCGCCGC+CGG | 0.578051 | 2:+24221386 | None:intergenic |
| CAAGGTTCATATCCCTCTCA+AGG | 0.580401 | 2:-24221708 | MsG0280008007.01.T01:CDS |
| TTGTGGGTTTAATGGATCGC+CGG | 0.585170 | 2:+24221889 | None:intergenic |
| CCTCCTCAGCCTCAACAACC+GGG | 0.585317 | 2:-24221431 | MsG0280008007.01.T01:CDS |
| ACCCACAAACACCGTGATGG+TGG | 0.586699 | 2:-24221857 | MsG0280008007.01.T01:CDS |
| CTTGCCGATCAAGGTATCGC+CGG | 0.591552 | 2:+24221727 | None:intergenic |
| ACCACCCACAAACACCGTGA+TGG | 0.592819 | 2:-24221860 | MsG0280008007.01.T01:CDS |
| CATCGTCAGGGAAAGCGAAA+GGG | 0.593366 | 2:-24221628 | MsG0280008007.01.T01:CDS |
| AAATGAACATGAACCTGTGA+TGG | 0.594346 | 2:-24221519 | MsG0280008007.01.T01:CDS |
| TATCCATAACCTGGTTGTTG+TGG | 0.595006 | 2:+24221302 | None:intergenic |
| CCAGAATCGTCTCTCTCTTG+AGG | 0.597520 | 2:-24221777 | MsG0280008007.01.T01:CDS |
| ACATCGTCAGGGAAAGCGAA+AGG | 0.598925 | 2:-24221629 | MsG0280008007.01.T01:CDS |
| GTGATGGCTTATCCTCCACC+TGG | 0.599924 | 2:-24221503 | MsG0280008007.01.T01:CDS |
| GGCTACCCGCCACAACAACC+GGG | 0.601809 | 2:-24221338 | MsG0280008007.01.T01:CDS |
| GGTGGAGGATAAGCCATCAC+AGG | 0.605627 | 2:+24221506 | None:intergenic |
| TGTGGTGGATATCCATAACC+TGG | 0.605985 | 2:+24221293 | None:intergenic |
| TTGACGGGGAAGTTCCAGGT+AGG | 0.608944 | 2:+24221827 | None:intergenic |
| TAGGGCTTGTTCCACCATCA+CGG | 0.609807 | 2:+24221846 | None:intergenic |
| CTCTCCGGCGATACCTTGAT+CGG | 0.612092 | 2:-24221731 | MsG0280008007.01.T01:CDS |
| TGTGGCGGGTAGCCATAACC+TGG | 0.613244 | 2:+24221347 | None:intergenic |
| GATGCTGGCTTTGATGATGG+TGG | 0.614997 | 2:-24221089 | MsG0280008007.01.T01:CDS |
| AGCATCATAAGAAGAAGCAT+CGG | 0.614999 | 2:+24221118 | None:intergenic |
| CGGCGATACCTTGATCGGCA+AGG | 0.615279 | 2:-24221726 | MsG0280008007.01.T01:CDS |
| TTATCAAGAAGCTCCTTGAG+AGG | 0.616116 | 2:+24221695 | None:intergenic |
| TTATCCTCCACCTGGAATGG+CGG | 0.616962 | 2:-24221495 | MsG0280008007.01.T01:CDS |
| TGCCGGAAAGAATCTCTGGA+GGG | 0.619081 | 2:+24221671 | None:intergenic |
| GGATACCCGCCGCAACAACC+GGG | 0.619155 | 2:-24221257 | MsG0280008007.01.T01:CDS |
| AGCTACCCACCGGCTCAACC+AGG | 0.621049 | 2:-24221365 | MsG0280008007.01.T01:CDS |
| ACCATCACGGTGTTTGTGGG+TGG | 0.625421 | 2:+24221859 | None:intergenic |
| ATCGCCGGAGAGGGTACGAT+CGG | 0.626426 | 2:+24221742 | None:intergenic |
| TATCAAGAAGCTCCTTGAGA+GGG | 0.626489 | 2:+24221696 | None:intergenic |
| GGTTACCCGCCACAACAACC+AGG | 0.627830 | 2:-24221311 | MsG0280008007.01.T01:CDS |
| GCGAAACATGAACCGGTGAA+GGG | 0.633198 | 2:-24221545 | MsG0280008007.01.T01:CDS |
| CATTGATTGTGAATTTGACG+GGG | 0.634758 | 2:+24221813 | None:intergenic |
| TGCGGCGGGTATCCATAACC+CGG | 0.635721 | 2:+24221266 | None:intergenic |
| GGAGGATAAGGTGTACCATA+CGG | 0.636365 | 2:+24221449 | None:intergenic |
| GCCGGAAAGAATCTCTGGAG+GGG | 0.637715 | 2:+24221672 | None:intergenic |
| CGATCAAGGTATCGCCGGAG+AGG | 0.639940 | 2:+24221732 | None:intergenic |
| GGATATCCACCACAACAACC+GGG | 0.643875 | 2:-24221284 | MsG0280008007.01.T01:CDS |
| CTGCCGGAAAGAATCTCTGG+AGG | 0.646202 | 2:+24221670 | None:intergenic |
| GCAGGTGGATATCCATAACC+CGG | 0.653652 | 2:+24221413 | None:intergenic |
| ATATCCACCTGCACCACCGG+CGG | 0.658062 | 2:-24221402 | MsG0280008007.01.T01:CDS |
| GCAGGTGGATATCCATAACC+CGG | 0.658291 | 2:+24221239 | None:intergenic |
| ATCGCCGGAGATTGAAACGA+CGG | 0.660911 | 2:+24221904 | None:intergenic |
| GCCGCCGCCGCCATTCCAGG+TGG | 0.660951 | 2:+24221488 | None:intergenic |
| CATAACCTGGTTGAGCCGGT+GGG | 0.665341 | 2:+24221360 | None:intergenic |
| TGGTTATGGTAGCTACCCAC+CGG | 0.675553 | 2:-24221375 | MsG0280008007.01.T01:CDS |
| ATCAGGTTAGAACATCGTCA+GGG | 0.679721 | 2:-24221640 | MsG0280008007.01.T01:CDS |
| AGCTCCGGCGATGAAAACGG+CGG | 0.686364 | 2:-24221567 | MsG0280008007.01.T01:CDS |
| TGTGGCGGGTAACCATGACC+CGG | 0.697932 | 2:+24221320 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAACCTCTCTTATAAATT+CGG | - | Chr2:24221451-24221470 | MsG0280008007.01.T01:CDS | 20.0% |
| ! | AAGAAGAATAAAATGGGAAT+GGG | - | Chr2:24221853-24221872 | MsG0280008007.01.T01:CDS | 25.0% |
| ! | AAGCCTAAGAAGAATAAAAT+GGG | - | Chr2:24221847-24221866 | MsG0280008007.01.T01:CDS | 25.0% |
| ! | TAAGAAGAATAAAATGGGAA+TGG | - | Chr2:24221852-24221871 | MsG0280008007.01.T01:CDS | 25.0% |
| !! | ATCATTGATTGTGAATTTGA+CGG | + | Chr2:24221245-24221264 | None:intergenic | 25.0% |
| !! | ATTCCCATTTTATTCTTCTT+AGG | + | Chr2:24221853-24221872 | None:intergenic | 25.0% |
| !!! | AACATTTTTGAGATCTTTAG+CGG | + | Chr2:24221101-24221120 | None:intergenic | 25.0% |
| AATAAAATGGGAATGGGATT+GGG | - | Chr2:24221859-24221878 | MsG0280008007.01.T01:CDS | 30.0% | |
| GAAGCCTAAGAAGAATAAAA+TGG | - | Chr2:24221846-24221865 | MsG0280008007.01.T01:CDS | 30.0% | |
| TTTCACCGAATTTATAAGAG+AGG | + | Chr2:24221459-24221478 | None:intergenic | 30.0% | |
| ! | TCATTGATTGTGAATTTGAC+GGG | + | Chr2:24221244-24221263 | None:intergenic | 30.0% |
| ! | TGTTAATCTTTTCTCCAAGA+TGG | - | Chr2:24221117-24221136 | MsG0280008007.01.T01:CDS | 30.0% |
| AAATGAACATGAACCTGTGA+TGG | - | Chr2:24221534-24221553 | MsG0280008007.01.T01:CDS | 35.0% | |
| GAATAAAATGGGAATGGGAT+TGG | - | Chr2:24221858-24221877 | MsG0280008007.01.T01:CDS | 35.0% | |
| GGATATGATGTTGAGTTCTA+AGG | + | Chr2:24221080-24221099 | None:intergenic | 35.0% | |
| TAACCTGATAATTAACCTGC+CGG | + | Chr2:24221402-24221421 | None:intergenic | 35.0% | |
| ! | AGCATCATAAGAAGAAGCAT+CGG | + | Chr2:24221938-24221957 | None:intergenic | 35.0% |
| ! | CATTGATTGTGAATTTGACG+GGG | + | Chr2:24221243-24221262 | None:intergenic | 35.0% |
| !!! | TGTTCATTTTTTCCCTTCAC+CGG | + | Chr2:24221523-24221542 | None:intergenic | 35.0% |
| !!! | TTTGATGATGGTGGTTTTGA+TGG | - | Chr2:24221973-24221992 | MsG0280008007.01.T01:CDS | 35.0% |
| ATCAGGTTAGAACATCGTCA+GGG | - | Chr2:24221413-24221432 | MsG0280008007.01.T01:CDS | 40.0% | |
| GATGCTTCTTCTTATGATGC+TGG | - | Chr2:24221937-24221956 | MsG0280008007.01.T01:CDS | 40.0% | |
| TATCAAGAAGCTCCTTGAGA+GGG | + | Chr2:24221360-24221379 | None:intergenic | 40.0% | |
| TATCAGGTTAGAACATCGTC+AGG | - | Chr2:24221412-24221431 | MsG0280008007.01.T01:CDS | 40.0% | |
| TATCCATAACCTGGTTGTTG+TGG | + | Chr2:24221754-24221773 | None:intergenic | 40.0% | |
| TATGATGCTGGATATGATGC+TGG | - | Chr2:24221949-24221968 | MsG0280008007.01.T01:CDS | 40.0% | |
| TTATCAAGAAGCTCCTTGAG+AGG | + | Chr2:24221361-24221380 | None:intergenic | 40.0% | |
| TTTCCGGCAGGTTAATTATC+AGG | - | Chr2:24221396-24221415 | MsG0280008007.01.T01:CDS | 40.0% | |
| !! | TATGATGCTGGCTTTGATGA+TGG | - | Chr2:24221961-24221980 | MsG0280008007.01.T01:CDS | 40.0% |
| CAAGGTTCATATCCCTCTCA+AGG | - | Chr2:24221345-24221364 | MsG0280008007.01.T01:CDS | 45.0% | |
| GATATGAACCTTGCCGATCA+AGG | + | Chr2:24221338-24221357 | None:intergenic | 45.0% | |
| GGAGGATAAGGTGTACCATA+CGG | + | Chr2:24221607-24221626 | None:intergenic | 45.0% | |
| TATCCATAACCCGGTTGTTG+AGG | + | Chr2:24221634-24221653 | None:intergenic | 45.0% | |
| TATCCATAACCCGGTTGTTG+CGG | + | Chr2:24221634-24221653 | None:intergenic | 45.0% | |
| TATCCATAACCCGGTTGTTG+TGG | + | Chr2:24221634-24221653 | None:intergenic | 45.0% | |
| TGGATATCCACCACAACAAC+CGG | - | Chr2:24221768-24221787 | MsG0280008007.01.T01:CDS | 45.0% | |
| ! | GCTTTAGGTGGGATGTTGAT+TGG | - | Chr2:24221901-24221920 | MsG0280008007.01.T01:CDS | 45.0% |
| ! | TTGTGGGTTTAATGGATCGC+CGG | + | Chr2:24221167-24221186 | None:intergenic | 45.0% |
| !! | TGTGGTGGATATCCATAACC+TGG | + | Chr2:24221763-24221782 | None:intergenic | 45.0% |
| !!! | GATGATGGTGGTTTTGATGG+TGG | - | Chr2:24221976-24221995 | MsG0280008007.01.T01:CDS | 45.0% |
| AACCTGCCGGAAAGAATCTC+TGG | + | Chr2:24221389-24221408 | None:intergenic | 50.0% | |
| ACATCGTCAGGGAAAGCGAA+AGG | - | Chr2:24221424-24221443 | MsG0280008007.01.T01:CDS | 50.0% | |
| ACCCCTCCAGAGATTCTTTC+CGG | - | Chr2:24221380-24221399 | MsG0280008007.01.T01:CDS | 50.0% | |
| ATCGCCGGAGATTGAAACGA+CGG | + | Chr2:24221152-24221171 | None:intergenic | 50.0% | |
| CATAACCTGGTTGTTGTGGC+GGG | + | Chr2:24221750-24221769 | None:intergenic | 50.0% | |
| CATCGTCAGGGAAAGCGAAA+GGG | - | Chr2:24221425-24221444 | MsG0280008007.01.T01:CDS | 50.0% | |
| CCAGAATCGTCTCTCTCTTG+AGG | - | Chr2:24221276-24221295 | MsG0280008007.01.T01:CDS | 50.0% | |
| CCATAACCTGGTTGTTGTGG+CGG | + | Chr2:24221751-24221770 | None:intergenic | 50.0% | |
| CCTCAAGAGAGAGACGATTC+TGG | + | Chr2:24221279-24221298 | None:intergenic | 50.0% | |
| CGGTGAAAAAGTCCAAGCTC+CGG | - | Chr2:24221471-24221490 | MsG0280008007.01.T01:CDS | 50.0% | |
| GAATTTGACGGGGAAGTTCC+AGG | + | Chr2:24221233-24221252 | None:intergenic | 50.0% | |
| GCAGGTGGATATCCATAACC+CGG | + | Chr2:24221643-24221662 | None:intergenic | 50.0% | |
| GCGAAACATGAACCGGTGAA+GGG | - | Chr2:24221508-24221527 | MsG0280008007.01.T01:CDS | 50.0% | |
| GGATATCCACCACAACAACC+GGG | - | Chr2:24221769-24221788 | MsG0280008007.01.T01:CDS | 50.0% | |
| GTGGCGGTTTGTGGGTTTAA+TGG | + | Chr2:24221175-24221194 | None:intergenic | 50.0% | |
| TAACCATGACCCGGTTGTTG+TGG | + | Chr2:24221727-24221746 | None:intergenic | 50.0% | |
| TACGCCGTCGTTTCAATCTC+CGG | - | Chr2:24221145-24221164 | MsG0280008007.01.T01:CDS | 50.0% | |
| TAGCCATAACCTGGTTGAGC+CGG | + | Chr2:24221700-24221719 | None:intergenic | 50.0% | |
| TCCACCATCACGGTGTTTGT+GGG | + | Chr2:24221200-24221219 | None:intergenic | 50.0% | |
| TGCCGGAAAGAATCTCTGGA+GGG | + | Chr2:24221385-24221404 | None:intergenic | 50.0% | |
| TGGTTATGGTAGCTACCCAC+CGG | - | Chr2:24221678-24221697 | MsG0280008007.01.T01:CDS | 50.0% | |
| TGTTGAGGCTGAGGAGGATA+AGG | + | Chr2:24221619-24221638 | None:intergenic | 50.0% | |
| TTAGGCTTCTGTGCTTGTGC+AGG | + | Chr2:24221835-24221854 | None:intergenic | 50.0% | |
| TTATCCTCCACCTGGAATGG+CGG | - | Chr2:24221558-24221577 | MsG0280008007.01.T01:CDS | 50.0% | |
| TTCCACCATCACGGTGTTTG+TGG | + | Chr2:24221201-24221220 | None:intergenic | 50.0% | |
| ! | TAGGGCTTGTTCCACCATCA+CGG | + | Chr2:24221210-24221229 | None:intergenic | 50.0% |
| !! | GATGCTGGCTTTGATGATGG+TGG | - | Chr2:24221964-24221983 | MsG0280008007.01.T01:CDS | 50.0% |
| !! | TGCTTGGAGGTGCTTTAGGT+GGG | - | Chr2:24221890-24221909 | MsG0280008007.01.T01:CDS | 50.0% |
| !! | TTGCTTGGAGGTGCTTTAGG+TGG | - | Chr2:24221889-24221908 | MsG0280008007.01.T01:CDS | 50.0% |
| AACGGCGGCGAAACATGAAC+CGG | - | Chr2:24221501-24221520 | MsG0280008007.01.T01:CDS | 55.0% | |
| ACCACCCACAAACACCGTGA+TGG | - | Chr2:24221193-24221212 | MsG0280008007.01.T01:CDS | 55.0% | |
| ACCATCACGGTGTTTGTGGG+TGG | + | Chr2:24221197-24221216 | None:intergenic | 55.0% | |
| ACCCACAAACACCGTGATGG+TGG | - | Chr2:24221196-24221215 | MsG0280008007.01.T01:CDS | 55.0% | |
| ATCACGGTGTTTGTGGGTGG+TGG | + | Chr2:24221194-24221213 | None:intergenic | 55.0% | |
| ATCTCCGATCGTACCCTCTC+CGG | - | Chr2:24221307-24221326 | MsG0280008007.01.T01:CDS | 55.0% | |
| ATGGGAATGGGATTGGGAGC+AGG | - | Chr2:24221865-24221884 | MsG0280008007.01.T01:CDS | 55.0% | |
| CAGCCTCAACAACCGGGTTA+TGG | - | Chr2:24221628-24221647 | MsG0280008007.01.T01:CDS | 55.0% | |
| CATAACCTGGTTGAGCCGGT+GGG | + | Chr2:24221696-24221715 | None:intergenic | 55.0% | |
| CCAAGCTCCGGCGATGAAAA+CGG | - | Chr2:24221483-24221502 | MsG0280008007.01.T01:CDS | 55.0% | |
| CCACCACAACAACCGGGTTA+TGG | - | Chr2:24221775-24221794 | MsG0280008007.01.T01:CDS | 55.0% | |
| CCATAACCCGGTTGTTGTGG+TGG | + | Chr2:24221778-24221797 | None:intergenic | 55.0% | |
| CCGCCACAACAACCAGGTTA+TGG | - | Chr2:24221748-24221767 | MsG0280008007.01.T01:CDS | 55.0% | |
| CTCCAGAGATTCTTTCCGGC+AGG | - | Chr2:24221384-24221403 | MsG0280008007.01.T01:CDS | 55.0% | |
| CTCTCCGGCGATACCTTGAT+CGG | - | Chr2:24221322-24221341 | MsG0280008007.01.T01:CDS | 55.0% | |
| CTGCCGGAAAGAATCTCTGG+AGG | + | Chr2:24221386-24221405 | None:intergenic | 55.0% | |
| GACGGCGTAAACGTCCATCT+TGG | + | Chr2:24221134-24221153 | None:intergenic | 55.0% | |
| GGCGAAACATGAACCGGTGA+AGG | - | Chr2:24221507-24221526 | MsG0280008007.01.T01:CDS | 55.0% | |
| GGCTTATCCTCCACCTGGAA+TGG | - | Chr2:24221555-24221574 | MsG0280008007.01.T01:CDS | 55.0% | |
| GGTGGAGGATAAGCCATCAC+AGG | + | Chr2:24221550-24221569 | None:intergenic | 55.0% | |
| GTGATGGCTTATCCTCCACC+TGG | - | Chr2:24221550-24221569 | MsG0280008007.01.T01:CDS | 55.0% | |
| TAACCCGGTTGTTGAGGCTG+AGG | + | Chr2:24221628-24221647 | None:intergenic | 55.0% | |
| TCCTCCTCAGCCTCAACAAC+CGG | - | Chr2:24221621-24221640 | MsG0280008007.01.T01:CDS | 55.0% | |
| TGACGGGGAAGTTCCAGGTA+GGG | + | Chr2:24221228-24221247 | None:intergenic | 55.0% | |
| TGGATATCCACCTGCACCAC+CGG | - | Chr2:24221648-24221667 | MsG0280008007.01.T01:CDS | 55.0% | |
| TGGGAATGGGATTGGGAGCA+GGG | - | Chr2:24221866-24221885 | MsG0280008007.01.T01:CDS | 55.0% | |
| TTGACGGGGAAGTTCCAGGT+AGG | + | Chr2:24221229-24221248 | None:intergenic | 55.0% | |
| ! | ATGGTGGAACAAGCCCTACC+TGG | - | Chr2:24221212-24221231 | MsG0280008007.01.T01:CDS | 55.0% |
| ! | GCCGGAAAGAATCTCTGGAG+GGG | + | Chr2:24221384-24221403 | None:intergenic | 55.0% |
| !! | CTTGCCGATCAAGGTATCGC+CGG | + | Chr2:24221329-24221348 | None:intergenic | 55.0% |
| !! | GATCAAGGTATCGCCGGAGA+GGG | + | Chr2:24221323-24221342 | None:intergenic | 55.0% |
| !! | GGGTTGCTTGGAGGTGCTTT+AGG | - | Chr2:24221886-24221905 | MsG0280008007.01.T01:CDS | 55.0% |
| AGCTCCGGCGATGAAAACGG+CGG | - | Chr2:24221486-24221505 | MsG0280008007.01.T01:CDS | 60.0% | |
| ATATCCACCTGCACCACCGG+CGG | - | Chr2:24221651-24221670 | MsG0280008007.01.T01:CDS | 60.0% | |
| CATAACCCGGTTGTTGCGGC+GGG | + | Chr2:24221804-24221823 | None:intergenic | 60.0% | |
| CATGACCCGGTTGTTGTGGC+GGG | + | Chr2:24221723-24221742 | None:intergenic | 60.0% | |
| CCATAACCCGGTTGTTGCGG+CGG | + | Chr2:24221805-24221824 | None:intergenic | 60.0% | |
| CCATAACCTGGTTGAGCCGG+TGG | + | Chr2:24221697-24221716 | None:intergenic | 60.0% | |
| CCATGACCCGGTTGTTGTGG+CGG | + | Chr2:24221724-24221743 | None:intergenic | 60.0% | |
| CCTCCTCAGCCTCAACAACC+GGG | - | Chr2:24221622-24221641 | MsG0280008007.01.T01:CDS | 60.0% | |
| CGGCGATACCTTGATCGGCA+AGG | - | Chr2:24221327-24221346 | MsG0280008007.01.T01:CDS | 60.0% | |
| GGATTGGGAGCAGGGTTGCT+TGG | - | Chr2:24221874-24221893 | MsG0280008007.01.T01:CDS | 60.0% | |
| GGCTTCTGTGCTTGTGCAGG+TGG | + | Chr2:24221832-24221851 | None:intergenic | 60.0% | |
| GGTTACCCGCCACAACAACC+AGG | - | Chr2:24221742-24221761 | MsG0280008007.01.T01:CDS | 60.0% | |
| TGCGGCGGGTATCCATAACC+CGG | + | Chr2:24221790-24221809 | None:intergenic | 60.0% | |
| TGGATACCCGCCGCAACAAC+CGG | - | Chr2:24221795-24221814 | MsG0280008007.01.T01:CDS | 60.0% | |
| TGGCTACCCGCCACAACAAC+CGG | - | Chr2:24221714-24221733 | MsG0280008007.01.T01:CDS | 60.0% | |
| TTGGGAGCAGGGTTGCTTGG+AGG | - | Chr2:24221877-24221896 | MsG0280008007.01.T01:CDS | 60.0% | |
| ! | ACGGTGTTTGTGGGTGGTGG+CGG | + | Chr2:24221191-24221210 | None:intergenic | 60.0% |
| ! | ATCGCCGGAGAGGGTACGAT+CGG | + | Chr2:24221314-24221333 | None:intergenic | 60.0% |
| ! | CCGTTTTCATCGCCGGAGCT+TGG | + | Chr2:24221486-24221505 | None:intergenic | 60.0% |
| !! | CCACCGGCTCAACCAGGTTA+TGG | - | Chr2:24221694-24221713 | MsG0280008007.01.T01:CDS | 60.0% |
| !! | CGATCAAGGTATCGCCGGAG+AGG | + | Chr2:24221324-24221343 | None:intergenic | 60.0% |
| !! | TGTGGCGGGTAACCATGACC+CGG | + | Chr2:24221736-24221755 | None:intergenic | 60.0% |
| !! | TGTGGCGGGTAGCCATAACC+TGG | + | Chr2:24221709-24221728 | None:intergenic | 60.0% |
| !! | TGTGGGTGGTGGCGGTTTGT+GGG | + | Chr2:24221183-24221202 | None:intergenic | 60.0% |
| !! | TTCGCCGCCGTTTTCATCGC+CGG | + | Chr2:24221493-24221512 | None:intergenic | 60.0% |
| !! | TTGTGGGTGGTGGCGGTTTG+TGG | + | Chr2:24221184-24221203 | None:intergenic | 60.0% |
| CCCGGTTGTTGAGGCTGAGG+AGG | + | Chr2:24221625-24221644 | None:intergenic | 65.0% | |
| CCGCCACAACAACCGGGTCA+TGG | - | Chr2:24221721-24221740 | MsG0280008007.01.T01:CDS | 65.0% | |
| CCGCCGCAACAACCGGGTTA+TGG | - | Chr2:24221802-24221821 | MsG0280008007.01.T01:CDS | 65.0% | |
| CTACCATAACCAGCCGCCGC+CGG | + | Chr2:24221670-24221689 | None:intergenic | 65.0% | |
| GGATACCCGCCGCAACAACC+GGG | - | Chr2:24221796-24221815 | MsG0280008007.01.T01:CDS | 65.0% | |
| GGCTACCCGCCACAACAACC+GGG | - | Chr2:24221715-24221734 | MsG0280008007.01.T01:CDS | 65.0% | |
| TCCTCCACCTGGAATGGCGG+CGG | - | Chr2:24221561-24221580 | MsG0280008007.01.T01:CDS | 65.0% | |
| !! | AGCTACCCACCGGCTCAACC+AGG | - | Chr2:24221688-24221707 | MsG0280008007.01.T01:CDS | 65.0% |
| !! | GGGTCTAGCTCGGTGCCGTA+TGG | - | Chr2:24221589-24221608 | MsG0280008007.01.T01:CDS | 65.0% |
| TCCACCTGGAATGGCGGCGG+CGG | - | Chr2:24221564-24221583 | MsG0280008007.01.T01:CDS | 70.0% | |
| CCATAACCAGCCGCCGCCGG+TGG | + | Chr2:24221667-24221686 | None:intergenic | 75.0% | |
| CTGGAATGGCGGCGGCGGCT+GGG | - | Chr2:24221569-24221588 | MsG0280008007.01.T01:CDS | 75.0% | |
| GCCGCCGCCATTCCAGGTGG+AGG | + | Chr2:24221565-24221584 | None:intergenic | 75.0% | |
| GGCGGCGGCTGGGTCTAGCT+CGG | - | Chr2:24221579-24221598 | MsG0280008007.01.T01:CDS | 75.0% | |
| TCCACCTGCACCACCGGCGG+CGG | - | Chr2:24221654-24221673 | MsG0280008007.01.T01:CDS | 75.0% | |
| ! | CCACCGGCGGCGGCTGGTTA+TGG | - | Chr2:24221664-24221683 | MsG0280008007.01.T01:CDS | 75.0% |
| ! | CCAGCCGCCGCCGCCATTCC+AGG | + | Chr2:24221571-24221590 | None:intergenic | 80.0% |
| ! | CCTGGAATGGCGGCGGCGGC+TGG | - | Chr2:24221568-24221587 | MsG0280008007.01.T01:CDS | 80.0% |
| ! | GCCGCCGCCGCCATTCCAGG+TGG | + | Chr2:24221568-24221587 | None:intergenic | 80.0% |
| ! | CCAGCCGCCGCCGGTGGTGC+AGG | + | Chr2:24221661-24221680 | None:intergenic | 85.0% |
| ! | CCTGCACCACCGGCGGCGGC+TGG | - | Chr2:24221658-24221677 | MsG0280008007.01.T01:CDS | 85.0% |
| ! | GCCGCCGCCGGTGGTGCAGG+TGG | + | Chr2:24221658-24221677 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 24221064 | 24222011 | 24221064 | ID=MsG0280008007.01;Name=MsG0280008007.01 |
| Chr2 | mRNA | 24221064 | 24222011 | 24221064 | ID=MsG0280008007.01.T01;Parent=MsG0280008007.01;Name=MsG0280008007.01.T01;_AED=0.34;_eAED=0.34;_QI=0|-1|0|1|-1|1|1|0|315 |
| Chr2 | exon | 24221064 | 24222011 | 24221064 | ID=MsG0280008007.01.T01:exon:34726;Parent=MsG0280008007.01.T01 |
| Chr2 | CDS | 24221064 | 24222011 | 24221064 | ID=MsG0280008007.01.T01:cds;Parent=MsG0280008007.01.T01 |
| Gene Sequence |
| Protein sequence |
