AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008381.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008381.01.T01 MTR_5g088350 58.042 143 8 1 51 141 260 402 5.66e-41 145
MsG0280008381.01.T01 MTR_4g057765 97.183 71 2 0 141 211 159 229 1.86e-37 134
MsG0280008381.01.T01 MTR_5g088350 53.333 135 11 1 51 133 260 394 1.72e-32 122
MsG0280008381.01.T01 MTR_8g024590 67.105 76 24 1 67 141 328 403 1.91e-24 100
MsG0280008381.01.T01 MTR_2g019575 65.789 76 25 1 67 141 212 287 2.15e-24 99.0
MsG0280008381.01.T01 MTR_8g024600 65.789 76 25 1 67 141 246 321 2.88e-24 99.4
MsG0280008381.01.T01 MTR_8g024600 65.789 76 25 1 67 141 329 404 5.53e-24 99.4
MsG0280008381.01.T01 MTR_2g095480 65.672 67 23 0 143 209 159 225 3.08e-19 85.5
MsG0280008381.01.T01 MTR_2g049790 57.895 76 31 1 67 141 342 417 7.88e-19 85.1
MsG0280008381.01.T01 MTR_2g019575 60.606 66 25 1 67 131 212 277 1.63e-16 77.0
MsG0280008381.01.T01 MTR_1g063210 54.412 68 31 0 144 211 135 202 4.40e-16 76.6
MsG0280008381.01.T01 MTR_7g098550 83.333 42 7 0 1 42 249 290 2.41e-14 71.6
MsG0280008381.01.T01 MTR_7g098550 83.333 42 7 0 1 42 249 290 2.75e-14 72.0
MsG0280008381.01.T01 MTR_4g114670 42.857 77 43 1 66 141 313 389 3.28e-13 68.6
MsG0280008381.01.T01 MTR_4g114670 42.857 77 43 1 66 141 326 402 3.31e-13 68.6
MsG0280008381.01.T01 MTR_7g098550 88.889 36 4 0 7 42 247 282 1.65e-12 66.6
MsG0280008381.01.T01 MTR_7g101930 57.746 71 30 0 144 214 129 199 1.37e-11 63.5
MsG0280008381.01.T01 MTR_0041s0140 58.571 70 29 0 145 214 130 199 2.46e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008381.01.T01 AT2G26980 47.183 142 23 1 52 141 262 403 7.33e-30 115
MsG0280008381.01.T01 AT2G26980 47.183 142 23 1 52 141 272 413 8.22e-30 115
MsG0280008381.01.T01 AT5G21326 64.000 75 27 0 67 141 328 402 3.08e-27 108
MsG0280008381.01.T01 AT5G60800 67.568 74 24 0 143 216 132 205 7.44e-23 94.4
MsG0280008381.01.T01 AT5G60800 67.568 74 24 0 143 216 132 205 9.55e-23 94.4
MsG0280008381.01.T01 AT2G26980 40.645 155 38 2 52 154 262 414 1.51e-22 95.5
MsG0280008381.01.T01 AT1G30270 60.526 76 29 1 67 141 253 328 4.52e-21 90.9
MsG0280008381.01.T01 AT1G30270 60.526 76 29 1 67 141 350 425 6.96e-21 91.3
MsG0280008381.01.T01 AT1G30270 60.526 76 29 1 67 141 350 425 7.95e-21 90.9
MsG0280008381.01.T01 AT1G01140 39.583 144 34 2 51 141 268 411 2.77e-20 89.4
MsG0280008381.01.T01 AT1G01140 39.583 144 34 2 51 141 266 409 3.11e-20 89.0
MsG0280008381.01.T01 AT1G01140 39.583 144 34 2 51 141 266 409 3.14e-20 89.0
MsG0280008381.01.T01 AT5G03380 57.746 71 30 0 144 214 127 197 1.24e-15 75.5
MsG0280008381.01.T01 AT5G03380 57.746 71 30 0 144 214 154 224 1.54e-15 75.5
MsG0280008381.01.T01 AT5G35410 44.737 76 41 1 67 141 327 402 2.62e-13 68.9
MsG0280008381.01.T01 AT2G26980 37.500 112 18 1 52 111 262 373 4.55e-12 65.1
MsG0280008381.01.T01 AT2G28090 55.357 56 25 0 154 209 132 187 6.85e-12 63.5
MsG0280008381.01.T01 AT5G58380 48.529 68 34 1 75 141 350 417 1.26e-11 64.3
MsG0280008381.01.T01 AT1G29230 45.312 64 35 0 78 141 413 476 3.75e-11 62.8

Find 47 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACCTTCCTTGTCTTTCTT+TGG 0.170033 2:-30334537 None:intergenic
AGATGATTGTGCTGAGATTT+TGG 0.230471 2:+30332736 MsG0280008381.01.T01:CDS
CACCTATCTTTGTTCTTCTT+AGG 0.243845 2:-30332602 None:intergenic
GAAGAAGGTGCTAAACTTCT+TGG 0.256842 2:+30333032 MsG0280008381.01.T01:CDS
ATGTAGAACAGGGATTTAAA+AGG 0.261117 2:+30332958 MsG0280008381.01.T01:intron
ATACCTCTGTGGCAACATTA+AGG 0.295742 2:-30333121 None:intergenic
GAAGGAAATGAAGGAGGAGG+TGG 0.326527 2:+30334579 MsG0280008381.01.T01:CDS
CAAGGATGTATTAATAAGAT+TGG 0.369892 2:+30334277 MsG0280008381.01.T01:CDS
AGTGGCACCTTCTCTTCATA+TGG 0.374141 2:+30333148 MsG0280008381.01.T01:CDS
ATTTATCACAGAAGCTTAAG+AGG 0.379478 2:+30334496 MsG0280008381.01.T01:CDS
AGGAAATGAAGGAGGAGGTG+GGG 0.387875 2:+30334581 MsG0280008381.01.T01:CDS
GGAAATGAAGGAGGAGGTGG+GGG 0.405265 2:+30334582 MsG0280008381.01.T01:CDS
AAGGAAGGTGGTGGTGGTGG+TGG 0.421210 2:+30334549 MsG0280008381.01.T01:CDS
GACAAGGAAGGTGGTGGTGG+TGG 0.426526 2:+30334546 MsG0280008381.01.T01:CDS
ACACACCCTTCAAGCAGAAA+AGG 0.427737 2:-30334607 None:intergenic
AAGGAAATGAAGGAGGAGGT+GGG 0.437708 2:+30334580 MsG0280008381.01.T01:CDS
TTGCAAATTTGAAAGATGTA+AGG 0.439850 2:+30333090 MsG0280008381.01.T01:CDS
TGTAGAACAGGGATTTAAAA+GGG 0.452811 2:+30332959 MsG0280008381.01.T01:intron
AAGGATGTATTAATAAGATT+GGG 0.465298 2:+30334278 MsG0280008381.01.T01:CDS
TTGTTGATTATCTCGTCTGC+AGG 0.492149 2:-30333005 None:intergenic
AAAGACAAGGAAGGTGGTGG+TGG 0.508002 2:+30334543 MsG0280008381.01.T01:CDS
ATCCTAAGAAGAACAAAGAT+AGG 0.515256 2:+30332600 MsG0280008381.01.T01:CDS
CACACCCTTCAAGCAGAAAA+GGG 0.521748 2:-30334606 None:intergenic
ATCACAGAAGCTTAAGAGGA+AGG 0.524713 2:+30334500 MsG0280008381.01.T01:CDS
GGTGAGAAGGAAGGAAATGA+AGG 0.524894 2:+30334570 MsG0280008381.01.T01:CDS
AAGGAAGGAAATGAAGGAGG+AGG 0.525413 2:+30334576 MsG0280008381.01.T01:CDS
GGTGGTGGTGGTGAGAAGGA+AGG 0.527573 2:+30334561 MsG0280008381.01.T01:CDS
GAAAGATAATGTGATTGTGA+AGG 0.538961 2:+30334443 MsG0280008381.01.T01:CDS
ATAATCAACAAGATTGAAGA+AGG 0.544557 2:+30333017 MsG0280008381.01.T01:CDS
AAAGATAATGTGATTGTGAA+GGG 0.550811 2:+30334444 MsG0280008381.01.T01:CDS
GAAGCTTAAGAGGAAGGTTG+AGG 0.551168 2:+30334506 MsG0280008381.01.T01:CDS
TGTGATTGTGAAGGGTACAA+TGG 0.579067 2:+30334452 MsG0280008381.01.T01:CDS
GAGAAGGAAGGAAATGAAGG+AGG 0.583328 2:+30334573 MsG0280008381.01.T01:CDS
AATTCATTAATGAGTATCGA+TGG 0.596375 2:+30332710 MsG0280008381.01.T01:CDS
ACTTCAACCATATGAAGAGA+AGG 0.599789 2:-30333155 None:intergenic
AAAATTGTTATGAAAACCAA+AGG 0.601620 2:+30334301 MsG0280008381.01.T01:CDS
CTAAGAAGAACAAAGATAGG+TGG 0.608955 2:+30332603 MsG0280008381.01.T01:CDS
TGCCACAGAGGTATTTCAAG+TGG 0.617772 2:+30333130 MsG0280008381.01.T01:CDS
AGGGATTTAAAAGGGAAACA+AGG 0.622932 2:+30332967 MsG0280008381.01.T01:CDS
AAATTGGTACTACACTGTCA+AGG 0.625937 2:+30334259 MsG0280008381.01.T01:CDS
AAGAAAGACAAGGAAGGTGG+TGG 0.634788 2:+30334540 MsG0280008381.01.T01:CDS
AATTTGAAAGATGTAAGGAA+AGG 0.635759 2:+30333095 MsG0280008381.01.T01:CDS
CCAAAGAAAGACAAGGAAGG+TGG 0.648516 2:+30334537 MsG0280008381.01.T01:CDS
CAACCAAAGAAAGACAAGGA+AGG 0.655515 2:+30334534 MsG0280008381.01.T01:CDS
AAACCTTAATGTTGCCACAG+AGG 0.668073 2:+30333118 MsG0280008381.01.T01:CDS
AGTTCAACCAAAGAAAGACA+AGG 0.673352 2:+30334530 MsG0280008381.01.T01:CDS
TGCCACTTGAAATACCTCTG+TGG 0.737136 2:-30333132 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTAATAAAAAATT+TGG + Chr2:30333736-30333755 MsG0280008381.01.T01:intron 0.0%
!!! TAATGAATTTAGTACATTTT+TGG - Chr2:30332699-30332718 None:intergenic 15.0%
!! AAAATTGTTATGAAAACCAA+AGG + Chr2:30334301-30334320 MsG0280008381.01.T01:CDS 20.0%
!! AAGGATGTATTAATAAGATT+GGG + Chr2:30334278-30334297 MsG0280008381.01.T01:CDS 20.0%
!! ATAGTATACATTTCTTTGTA+TGG - Chr2:30333583-30333602 None:intergenic 20.0%
!! ATTAATAAAAAATTGCCAAC+AGG - Chr2:30333728-30333747 None:intergenic 20.0%
!!! AAAGTTTTTTGTAGAACTTA+TGG - Chr2:30333211-30333230 None:intergenic 20.0%
!!! ACTCTTTTTTTTTAATGACA+TGG - Chr2:30333768-30333787 None:intergenic 20.0%
!!! TTTTTTTAATGACATGGATT+TGG - Chr2:30333762-30333781 None:intergenic 20.0%
! AAAGATAATGTGATTGTGAA+GGG + Chr2:30334444-30334463 MsG0280008381.01.T01:CDS 25.0%
! AAGAAATGTATACTATCATG+TGG + Chr2:30333587-30333606 MsG0280008381.01.T01:intron 25.0%
! AATTTGAAAGATGTAAGGAA+AGG + Chr2:30333095-30333114 MsG0280008381.01.T01:CDS 25.0%
! AGAAGAAAAATTTCAAGATG+AGG + Chr2:30333066-30333085 MsG0280008381.01.T01:CDS 25.0%
! ATAATCAACAAGATTGAAGA+AGG + Chr2:30333017-30333036 MsG0280008381.01.T01:CDS 25.0%
! ATAGAAGAAGAATGAGAAAA+GGG - Chr2:30333882-30333901 None:intergenic 25.0%
! CAAAAACTGTATCCATATAA+GGG - Chr2:30333426-30333445 None:intergenic 25.0%
! CAAGGATGTATTAATAAGAT+TGG + Chr2:30334277-30334296 MsG0280008381.01.T01:CDS 25.0%
! CATATATACTCTTAAGACAA+TGG + Chr2:30333473-30333492 MsG0280008381.01.T01:intron 25.0%
! GAAAAATGAAGACAAAAAAG+AGG + Chr2:30334115-30334134 MsG0280008381.01.T01:intron 25.0%
! TACCTATCATTACTCTTTAA+AGG - Chr2:30333670-30333689 None:intergenic 25.0%
! TATAAATGCCAATGGAATAT+TGG + Chr2:30333501-30333520 MsG0280008381.01.T01:intron 25.0%
! TCAATCTTCATTCTTCATTA+TGG + Chr2:30333907-30333926 MsG0280008381.01.T01:intron 25.0%
! TTAATCTGAAGACTAACAAA+AGG + Chr2:30333262-30333281 MsG0280008381.01.T01:intron 25.0%
! TTGCAAATTTGAAAGATGTA+AGG + Chr2:30333090-30333109 MsG0280008381.01.T01:CDS 25.0%
!! AAATTTGTTTGATGTAGAAC+AGG + Chr2:30332947-30332966 MsG0280008381.01.T01:intron 25.0%
!! AATTTGTTTGATGTAGAACA+GGG + Chr2:30332948-30332967 MsG0280008381.01.T01:intron 25.0%
!! ATTTTCTTTAACACTTCTCT+TGG - Chr2:30332675-30332694 None:intergenic 25.0%
!! CTACATCAAACAAATTTTCA+AGG - Chr2:30332944-30332963 None:intergenic 25.0%
!! TTCCTTTAAAGAGTAATGAT+AGG + Chr2:30333665-30333684 MsG0280008381.01.T01:intron 25.0%
!!! AATATGATTTTGATGTGTGT+AGG + Chr2:30334393-30334412 MsG0280008381.01.T01:intron 25.0%
!!! AATTCATTAATGAGTATCGA+TGG + Chr2:30332710-30332729 MsG0280008381.01.T01:CDS 25.0%
!!! TACTACTTCTGTTTTGAAAT+TGG + Chr2:30334243-30334262 MsG0280008381.01.T01:CDS 25.0%
!!! TTCTCATCAGATTTTTTGTT+TGG - Chr2:30334095-30334114 None:intergenic 25.0%
AAAGAAGAAAACAACAACAG+TGG + Chr2:30333972-30333991 MsG0280008381.01.T01:intron 30.0%
AACAACAACATCAACAACAA+TGG + Chr2:30333939-30333958 MsG0280008381.01.T01:intron 30.0%
AATCAACTCAAATGCATTCA+TGG - Chr2:30332901-30332920 None:intergenic 30.0%
ATAAAAAATTGCCAACAGGA+AGG - Chr2:30333724-30333743 None:intergenic 30.0%
ATCCTAAGAAGAACAAAGAT+AGG + Chr2:30332600-30332619 MsG0280008381.01.T01:CDS 30.0%
ATGTAGAACAGGGATTTAAA+AGG + Chr2:30332958-30332977 MsG0280008381.01.T01:intron 30.0%
ATTGTTATGAAAACCAAAGG+TGG + Chr2:30334304-30334323 MsG0280008381.01.T01:intron 30.0%
ATTTATCACAGAAGCTTAAG+AGG + Chr2:30334496-30334515 MsG0280008381.01.T01:CDS 30.0%
CAATACACAAGAAAACTTCA+TGG - Chr2:30333538-30333557 None:intergenic 30.0%
GAAAAATAAAAACCCACCTT+TGG - Chr2:30334320-30334339 None:intergenic 30.0%
GAAAGATAATGTGATTGTGA+AGG + Chr2:30334443-30334462 MsG0280008381.01.T01:CDS 30.0%
GATAGAAGAAGAATGAGAAA+AGG - Chr2:30333883-30333902 None:intergenic 30.0%
GCAAAAACTGTATCCATATA+AGG - Chr2:30333427-30333446 None:intergenic 30.0%
GTATACATTTCTTTGTATGG+TGG - Chr2:30333580-30333599 None:intergenic 30.0%
TAAAAAATTGCCAACAGGAA+GGG - Chr2:30333723-30333742 None:intergenic 30.0%
TGGATTCTTATAAATGCCAA+TGG + Chr2:30333493-30333512 MsG0280008381.01.T01:intron 30.0%
TGTAGAACAGGGATTTAAAA+GGG + Chr2:30332959-30332978 MsG0280008381.01.T01:intron 30.0%
TTGTTATGAAAACCAAAGGT+GGG + Chr2:30334305-30334324 MsG0280008381.01.T01:intron 30.0%
! AGAAGCTGTCTTTAAAGATT+CGG + Chr2:30332832-30332851 MsG0280008381.01.T01:intron 30.0%
! CTTCTTTCTTTTCTGTCATA+TGG - Chr2:30332865-30332884 None:intergenic 30.0%
! TTATAAGCTTCCAGTTTTTG+AGG + Chr2:30332781-30332800 MsG0280008381.01.T01:CDS 30.0%
!! TTCTTGTTGTTATCCTTCTT+GGG - Chr2:30334062-30334081 None:intergenic 30.0%
!!! GTTGAACAACTCTTGTTTTA+TGG + Chr2:30333366-30333385 MsG0280008381.01.T01:intron 30.0%
AAATTGGTACTACACTGTCA+AGG + Chr2:30334259-30334278 MsG0280008381.01.T01:CDS 35.0%
AACAACATCAACAACAATGG+AGG + Chr2:30333942-30333961 MsG0280008381.01.T01:intron 35.0%
AATGATAGGTATACCACCAT+AGG + Chr2:30333679-30333698 MsG0280008381.01.T01:intron 35.0%
ACTTCAACCATATGAAGAGA+AGG - Chr2:30333158-30333177 None:intergenic 35.0%
ACTTTCAACAAGCTGTTGTT+TGG + Chr2:30333226-30333245 MsG0280008381.01.T01:intron 35.0%
AGAAAAGGGAGAAAAGGAAA+TGG - Chr2:30333859-30333878 None:intergenic 35.0%
AGAATGAGAAAAGGGAGAAA+AGG - Chr2:30333874-30333893 None:intergenic 35.0%
AGGGATTTAAAAGGGAAACA+AGG + Chr2:30332967-30332986 MsG0280008381.01.T01:CDS 35.0%
AGTTCAACCAAAGAAAGACA+AGG + Chr2:30334530-30334549 MsG0280008381.01.T01:CDS 35.0%
CAAACAACTGTAGCAAGAAT+CGG + Chr2:30333806-30333825 MsG0280008381.01.T01:intron 35.0%
CAAGAAGGATAACAACAAGA+AGG + Chr2:30334061-30334080 MsG0280008381.01.T01:intron 35.0%
CACCTATCTTTGTTCTTCTT+AGG - Chr2:30332605-30332624 None:intergenic 35.0%
CTAAGAAGAACAAAGATAGG+TGG + Chr2:30332603-30332622 MsG0280008381.01.T01:CDS 35.0%
CTCTTCATATGGTTGAAGTA+AGG + Chr2:30333159-30333178 MsG0280008381.01.T01:intron 35.0%
GAATGAGAAAAGGGAGAAAA+GGG - Chr2:30333873-30333892 None:intergenic 35.0%
GTATATATGTATGCATGCAG+TGG - Chr2:30333462-30333481 None:intergenic 35.0%
GTTGAAGTAAGGAAAGCAAA+AGG + Chr2:30333170-30333189 MsG0280008381.01.T01:intron 35.0%
TATGGTGGCAGAAATATGAT+TGG - Chr2:30333565-30333584 None:intergenic 35.0%
TGACAGAAAAGAAAGAAGAG+CGG + Chr2:30332867-30332886 MsG0280008381.01.T01:intron 35.0%
! AGATGATTGTGCTGAGATTT+TGG + Chr2:30332736-30332755 MsG0280008381.01.T01:CDS 35.0%
! AGTTGATTTCCATGTCTAGA+GGG + Chr2:30332913-30332932 MsG0280008381.01.T01:intron 35.0%
! CAAATGCATTCATGGATTGT+TGG - Chr2:30332893-30332912 None:intergenic 35.0%
! CATATAAGGGAACAAGTTGA+TGG - Chr2:30333413-30333432 None:intergenic 35.0%
! CATCAACTTGTTCCCTTATA+TGG + Chr2:30333411-30333430 MsG0280008381.01.T01:intron 35.0%
! GTTCCATTTGCTACTACTAT+TGG + Chr2:30333309-30333328 MsG0280008381.01.T01:intron 35.0%
!! AACTTTCCAACAGTTTTGTG+TGG - Chr2:30333349-30333368 None:intergenic 35.0%
!! CTTCTTGTTGTTATCCTTCT+TGG - Chr2:30334063-30334082 None:intergenic 35.0%
!! TTCCAGTTTTTGAGGAAAGT+GGG + Chr2:30332789-30332808 MsG0280008381.01.T01:intron 35.0%
AAACCTTAATGTTGCCACAG+AGG + Chr2:30333118-30333137 MsG0280008381.01.T01:CDS 40.0%
AAAGGGAGAAAAGGGAGAAA+AGG - Chr2:30333865-30333884 None:intergenic 40.0%
AGAATGCCACACAAAACTGT+TGG + Chr2:30333340-30333359 MsG0280008381.01.T01:intron 40.0%
ATACCTCTGTGGCAACATTA+AGG - Chr2:30333124-30333143 None:intergenic 40.0%
ATCACAGAAGCTTAAGAGGA+AGG + Chr2:30334500-30334519 MsG0280008381.01.T01:CDS 40.0%
CAACCAAAGAAAGACAAGGA+AGG + Chr2:30334534-30334553 MsG0280008381.01.T01:CDS 40.0%
CTGCCAATAGTAGTAGCAAA+TGG - Chr2:30333315-30333334 None:intergenic 40.0%
GAAAGCAAAAGGAGATACGT+TGG + Chr2:30333181-30333200 MsG0280008381.01.T01:intron 40.0%
GAAGAAAACAACAACAGTGG+AGG + Chr2:30333975-30333994 MsG0280008381.01.T01:intron 40.0%
GATGCAGTCCAATATTCCAT+TGG - Chr2:30333512-30333531 None:intergenic 40.0%
GGAGATAAGAACAACAATGG+AGG + Chr2:30333996-30334015 MsG0280008381.01.T01:intron 40.0%
GGAGGAGATAAGAACAACAA+TGG + Chr2:30333993-30334012 MsG0280008381.01.T01:intron 40.0%
TGGAGCTTGATACTCTATGT+GGG + Chr2:30333607-30333626 MsG0280008381.01.T01:intron 40.0%
TTGCTACTACTATTGGCAGT+TGG + Chr2:30333316-30333335 MsG0280008381.01.T01:intron 40.0%
TTGTTATCCTTCTTGGGAAG+TGG - Chr2:30334056-30334075 None:intergenic 40.0%
! GAGTTGATTTCCATGTCTAG+AGG + Chr2:30332912-30332931 MsG0280008381.01.T01:intron 40.0%
! TGTGATTGTGAAGGGTACAA+TGG + Chr2:30334452-30334471 MsG0280008381.01.T01:CDS 40.0%
! TTGTTGATTATCTCGTCTGC+AGG - Chr2:30333008-30333027 None:intergenic 40.0%
!! CTTCCAGTTTTTGAGGAAAG+TGG + Chr2:30332788-30332807 MsG0280008381.01.T01:intron 40.0%
!! GAAGAAGGTGCTAAACTTCT+TGG + Chr2:30333032-30333051 MsG0280008381.01.T01:CDS 40.0%
!! TCCAGTTTTTGAGGAAAGTG+GGG + Chr2:30332790-30332809 MsG0280008381.01.T01:intron 40.0%
AAGAAAGACAAGGAAGGTGG+TGG + Chr2:30334540-30334559 MsG0280008381.01.T01:CDS 45.0%
AAGGAAATGAAGGAGGAGGT+GGG + Chr2:30334580-30334599 MsG0280008381.01.T01:CDS 45.0%
AAGGAAGGAAATGAAGGAGG+AGG + Chr2:30334576-30334595 MsG0280008381.01.T01:CDS 45.0%
AGTGGCACCTTCTCTTCATA+TGG + Chr2:30333148-30333167 MsG0280008381.01.T01:CDS 45.0%
CATTTCACCACTTCCCAAGA+AGG + Chr2:30334046-30334065 MsG0280008381.01.T01:intron 45.0%
CCAAAGAAAGACAAGGAAGG+TGG + Chr2:30334537-30334556 MsG0280008381.01.T01:CDS 45.0%
CCACCTTCCTTGTCTTTCTT+TGG - Chr2:30334540-30334559 None:intergenic 45.0%
GAAGCTTAAGAGGAAGGTTG+AGG + Chr2:30334506-30334525 MsG0280008381.01.T01:CDS 45.0%
GAGAAGGAAGGAAATGAAGG+AGG + Chr2:30334573-30334592 MsG0280008381.01.T01:CDS 45.0%
GATAGGTATACCACCATAGG+TGG + Chr2:30333682-30333701 MsG0280008381.01.T01:intron 45.0%
GGAGCTTGATACTCTATGTG+GGG + Chr2:30333608-30333627 MsG0280008381.01.T01:intron 45.0%
GGTGAGAAGGAAGGAAATGA+AGG + Chr2:30334570-30334589 MsG0280008381.01.T01:CDS 45.0%
GTGCATGCTTGTATGCCAAT+TGG - Chr2:30333635-30333654 None:intergenic 45.0%
GTGGAGCTTGATACTCTATG+TGG + Chr2:30333606-30333625 MsG0280008381.01.T01:intron 45.0%
TACTCTATGTGGGGTCCAAT+TGG + Chr2:30333617-30333636 MsG0280008381.01.T01:intron 45.0%
TAGAGTGGTATTGCCACCTA+TGG - Chr2:30333698-30333717 None:intergenic 45.0%
TCCCCACTTTCCTCAAAAAC+TGG - Chr2:30332794-30332813 None:intergenic 45.0%
! CTGAGATTTTGGACGAGGAA+TGG + Chr2:30332747-30332766 MsG0280008381.01.T01:CDS 45.0%
! TGCCACTTGAAATACCTCTG+TGG - Chr2:30333135-30333154 None:intergenic 45.0%
! TTGTGCTGAGATTTTGGACG+AGG + Chr2:30332742-30332761 MsG0280008381.01.T01:CDS 45.0%
!! TGCCACAGAGGTATTTCAAG+TGG + Chr2:30333130-30333149 MsG0280008381.01.T01:CDS 45.0%
!!! TCATTTTTATTTTAATTTTT+TGG + Chr2:30334184-30334203 MsG0280008381.01.T01:intron 5.0%
AAGGTTCAGCCCTCTAGACA+TGG - Chr2:30332925-30332944 None:intergenic 50.0%
AGGAAATGAAGGAGGAGGTG+GGG + Chr2:30334581-30334600 MsG0280008381.01.T01:CDS 50.0%
AGTGGTATTGCCACCTATGG+TGG - Chr2:30333695-30333714 None:intergenic 50.0%
CATGCAGTGGTGCAACATTG+TGG - Chr2:30333449-30333468 None:intergenic 50.0%
GAAGGAAATGAAGGAGGAGG+TGG + Chr2:30334579-30334598 MsG0280008381.01.T01:CDS 50.0%
! AAAGACAAGGAAGGTGGTGG+TGG + Chr2:30334543-30334562 MsG0280008381.01.T01:CDS 50.0%
AGCTTCTACACCGTCGAGCT+TGG - Chr2:30332819-30332838 None:intergenic 55.0%
AGTGGGGAAACCAAGCTCGA+CGG + Chr2:30332806-30332825 MsG0280008381.01.T01:intron 55.0%
CCACTCTACACCCTTCCTGT+TGG + Chr2:30333710-30333729 MsG0280008381.01.T01:intron 55.0%
GGAAATGAAGGAGGAGGTGG+GGG + Chr2:30334582-30334601 MsG0280008381.01.T01:CDS 55.0%
! CCAACAGGAAGGGTGTAGAG+TGG - Chr2:30333713-30333732 None:intergenic 55.0%
!! AAGGAAGGTGGTGGTGGTGG+TGG + Chr2:30334549-30334568 MsG0280008381.01.T01:CDS 60.0%
!! GACAAGGAAGGTGGTGGTGG+TGG + Chr2:30334546-30334565 MsG0280008381.01.T01:CDS 60.0%
!! GGTGGTGGTGGTGAGAAGGA+AGG + Chr2:30334561-30334580 MsG0280008381.01.T01:CDS 60.0%
!! TGGTGGTGGTGGTGGTGAGA+AGG + Chr2:30334557-30334576 MsG0280008381.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 30332596 30334620 30332596 ID=MsG0280008381.01;Name=MsG0280008381.01
Chr2 mRNA 30332596 30334620 30332596 ID=MsG0280008381.01.T01;Parent=MsG0280008381.01;Name=MsG0280008381.01.T01;_AED=0.70;_eAED=0.72;_QI=0|0|0|0.75|1|1|4|0|237
Chr2 exon 30332596 30332806 30332596 ID=MsG0280008381.01.T01:exon:5763;Parent=MsG0280008381.01.T01
Chr2 exon 30332964 30333175 30332964 ID=MsG0280008381.01.T01:exon:5764;Parent=MsG0280008381.01.T01
Chr2 exon 30334238 30334322 30334238 ID=MsG0280008381.01.T01:exon:5765;Parent=MsG0280008381.01.T01
Chr2 exon 30334415 30334620 30334415 ID=MsG0280008381.01.T01:exon:5766;Parent=MsG0280008381.01.T01
Chr2 CDS 30332596 30332806 30332596 ID=MsG0280008381.01.T01:cds;Parent=MsG0280008381.01.T01
Chr2 CDS 30332964 30333175 30332964 ID=MsG0280008381.01.T01:cds;Parent=MsG0280008381.01.T01
Chr2 CDS 30334238 30334322 30334238 ID=MsG0280008381.01.T01:cds;Parent=MsG0280008381.01.T01
Chr2 CDS 30334415 30334620 30334415 ID=MsG0280008381.01.T01:cds;Parent=MsG0280008381.01.T01
Gene Sequence

>MsG0280008381.01.T01

ATGGATCCTAAGAAGAACAAAGATAGGTGGAGACTAGATAAACATACATGTGAATCAATTTGCAAACTGATTGAGACCAAGAGAAGTGTTAAAGAAAATACCAAAAATGTACTAAATTCATTAATGAGTATCGATGGTAAAGATGATTGTGCTGAGATTTTGGACGAGGAATGGTTTAAGAAAGATTATAAGCTTCCAGTTTTTGAGGAAAAACAGGGATTTAAAAGGGAAACAAGGTTCACATCGCAATCTCCTGCAGACGAGATAATCAACAAGATTGAAGAAGGTGCTAAACTTCTTGGCTTTGATGTGCAGAAGAAAAATTTCAAGATGAGGCTTGCAAATTTGAAAGATGTAAGGAAAGGAAACCTTAATGTTGCCACAGAGGTATTTCAAGTGGCACCTTCTCTTCATATGGTTGAATCAATTACTACTTCTGTTTTGAAATTGGTACTACACTGTCAAGGATGTATTAATAAGATTGGGAAAATTGTTATGAAAACCAAAGGAGTGCTTGAAATGAAAGTTGATAAAGAGAAAGATAATGTGATTGTGAAGGGTACAATGGATGTGAAAAAGCTAGTTGAGAATTTATCACAGAAGCTTAAGAGGAAGGTTGAGGTAGTTCAACCAAAGAAAGACAAGGAAGGTGGTGGTGGTGGTGGTGAGAAGGAAGGAAATGAAGGAGGAGGTGGGGGACCCTTTTCTGCTTGA
Protein sequence

>MsG0280008381.01.T01

MDPKKNKDRWRLDKHTCESICKLIETKRSVKENTKNVLNSLMSIDGKDDCAEILDEEWFKKDYKLPVFEEKQGFKRETRFTSQSPADEIINKIEEGAKLLGFDVQKKNFKMRLANLKDVRKGNLNVATEVFQVAPSLHMVESITTSVLKLVLHCQGCINKIGKIVMKTKGVLEMKVDKEKDNVIVKGTMDVKKLVENLSQKLKRKVEVVQPKKDKEGGGGGGEKEGNEGGGGGPFSA*