AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001173.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001173.01.T01 MTR_1g032520 96.339 601 18 2 1 599 1 599 0.0 1108
MsG0180001173.01.T01 MTR_8g021120 85.173 607 77 6 1 599 1 602 0.0 957
MsG0180001173.01.T01 MTR_8g105350 80.528 606 109 4 1 599 1 604 0.0 944
MsG0180001173.01.T01 MTR_2g026590 46.055 545 268 7 52 582 13 545 3.64e-136 408
MsG0180001173.01.T01 MTR_4g133890 47.290 535 257 6 51 568 17 543 5.81e-136 408
MsG0180001173.01.T01 MTR_4g133890 47.290 535 257 6 51 568 25 551 1.71e-135 407
MsG0180001173.01.T02 MTR_1g032520 96.339 601 18 2 1 599 1 599 0.0 1108
MsG0180001173.01.T02 MTR_8g021120 85.173 607 77 6 1 599 1 602 0.0 957
MsG0180001173.01.T02 MTR_8g105350 80.528 606 109 4 1 599 1 604 0.0 944
MsG0180001173.01.T02 MTR_2g026590 46.055 545 268 7 52 582 13 545 3.64e-136 408
MsG0180001173.01.T02 MTR_4g133890 47.290 535 257 6 51 568 17 543 5.81e-136 408
MsG0180001173.01.T02 MTR_4g133890 47.290 535 257 6 51 568 25 551 1.71e-135 407
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001173.01.T01 AT1G68060 73.290 614 133 11 1 592 1 605 0.0 856
MsG0180001173.01.T01 AT1G24764 71.224 629 143 10 1 599 1 621 0.0 848
MsG0180001173.01.T01 AT1G24764 71.224 629 143 10 1 599 60 680 0.0 846
MsG0180001173.01.T01 AT1G14840 70.833 600 154 11 9 599 5 592 0.0 789
MsG0180001173.01.T01 AT2G01750 72.007 593 140 11 21 599 37 617 0.0 785
MsG0180001173.01.T01 AT2G01750 71.959 592 140 11 21 598 37 616 0.0 783
MsG0180001173.01.T01 AT1G14840 68.500 600 153 12 9 599 5 577 0.0 746
MsG0180001173.01.T01 AT1G24764 78.981 471 93 4 132 599 1 468 0.0 741
MsG0180001173.01.T01 AT4G17220 44.933 523 238 11 52 566 6 486 2.49e-127 384
MsG0180001173.01.T02 AT1G68060 73.290 614 133 11 1 592 1 605 0.0 856
MsG0180001173.01.T02 AT1G24764 71.224 629 143 10 1 599 1 621 0.0 848
MsG0180001173.01.T02 AT1G24764 71.224 629 143 10 1 599 60 680 0.0 846
MsG0180001173.01.T02 AT1G14840 70.833 600 154 11 9 599 5 592 0.0 789
MsG0180001173.01.T02 AT2G01750 72.007 593 140 11 21 599 37 617 0.0 785
MsG0180001173.01.T02 AT2G01750 71.959 592 140 11 21 598 37 616 0.0 783
MsG0180001173.01.T02 AT1G14840 68.500 600 153 12 9 599 5 577 0.0 746
MsG0180001173.01.T02 AT1G24764 78.981 471 93 4 132 599 1 468 0.0 741
MsG0180001173.01.T02 AT4G17220 44.933 523 238 11 52 566 6 486 2.49e-127 384

Find 21 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTAAACGATCCAGAAAA+TGG 0.341450 1:-16831247 None:intergenic
TTCTGCTAGACAGCAGAGTA+TGG 0.375230 1:+16831297 MsG0180001173.01.T01:CDS
CAGTGAAAGTGGAGCTTAAT+CGG 0.377411 1:+16831359 MsG0180001173.01.T01:CDS
CATGAATTTGTTGCACGGTT+CGG 0.387547 1:+16831333 MsG0180001173.01.T01:CDS
ACGGCGATGGAGGAGATTTA+CGG 0.436994 1:+16831196 MsG0180001173.01.T01:intron
CGATTAAGCTCCACTTTCAC+TGG 0.472787 1:-16831358 None:intergenic
CGGAGGAGCGGTGGCGACGC+CGG 0.479934 1:+16831222 MsG0180001173.01.T01:CDS
GAATTTGAATGCGCGAGTGA+GGG 0.529120 1:+16831158 MsG0180001173.01.T01:intron
CGGTTCGGATCCAGTGAAAG+TGG 0.533833 1:+16831348 MsG0180001173.01.T01:CDS
TCGTTTCAGATCGACGGCGA+TGG 0.553339 1:+16831183 MsG0180001173.01.T01:intron
AGGGTTTCGTTTCAGATCGA+CGG 0.563160 1:+16831177 MsG0180001173.01.T01:intron
AACGATCCAGAAAATGGTGC+CGG 0.568721 1:-16831241 None:intergenic
AGAATTTGAATGCGCGAGTG+AGG 0.579102 1:+16831157 MsG0180001173.01.T01:intron
CGGCTTGAGAATGAAGTTCG+AGG 0.589218 1:+16831379 MsG0180001173.01.T01:CDS
TTTCAGATCGACGGCGATGG+AGG 0.606162 1:+16831186 MsG0180001173.01.T01:intron
TTACGGCGACGGAGGAGCGG+TGG 0.622998 1:+16831213 MsG0180001173.01.T01:CDS
GAGGAGATTTACGGCGACGG+AGG 0.631996 1:+16831205 MsG0180001173.01.T01:CDS
GAGTTCATGAATTTGTTGCA+CGG 0.637392 1:+16831328 MsG0180001173.01.T01:CDS
GATTTACGGCGACGGAGGAG+CGG 0.644818 1:+16831210 MsG0180001173.01.T01:CDS
ATGGAGGAGATTTACGGCGA+CGG 0.663204 1:+16831202 MsG0180001173.01.T01:CDS
AGAACTTCGTCGAGAAGACG+CGG 0.686070 1:+16831274 MsG0180001173.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATTTTATTTTATTTT+TGG + Chr1:16831441-16831460 MsG0180001173.01.T01:intron 0.0%
!! AAAAAAACATAATAAACAAA+TGG - Chr1:16831851-16831870 None:intergenic 10.0%
!!! ATTATGTTTTTTTTTTTTTG+GGG + Chr1:16831858-16831877 MsG0180001173.01.T01:intron 10.0%
!!! TTTTTAAATTTGTGTAGATA+AGG + Chr1:16831485-16831504 MsG0180001173.01.T01:intron 15.0%
!! AAAAAATATTTCCCCATAAT+AGG + Chr1:16833073-16833092 MsG0180001173.01.T01:intron 20.0%
!! AAATAATGTTTCATAGGATT+TGG - Chr1:16832687-16832706 None:intergenic 20.0%
!! AAGTCTAAATAATGTTTCAT+AGG - Chr1:16832693-16832712 None:intergenic 20.0%
!! AATATAAACTCAAAAGAACA+AGG - Chr1:16834766-16834785 None:intergenic 20.0%
!! ATAATTACTGAAGTTGAATT+AGG - Chr1:16834516-16834535 None:intergenic 20.0%
!! CAACACAACATTTAATATTT+GGG - Chr1:16833561-16833580 None:intergenic 20.0%
!! GAAAATGTCTCATATAAATT+TGG + Chr1:16832374-16832393 MsG0180001173.01.T01:intron 20.0%
!! TAATTACTGAAGTTGAATTA+GGG - Chr1:16834515-16834534 None:intergenic 20.0%
!! TCAACACAACATTTAATATT+TGG - Chr1:16833562-16833581 None:intergenic 20.0%
!! TTATAATCAATAAAGCAACT+GGG - Chr1:16835344-16835363 None:intergenic 20.0%
!!! AATCGTGTTATTCTTATTAA+AGG + Chr1:16832755-16832774 MsG0180001173.01.T01:intron 20.0%
!!! ACTAGTTCTGAAATTATTTA+AGG + Chr1:16835774-16835793 MsG0180001173.01.T01:intron 20.0%
!!! ATATTTTTAATTAGTGCTCT+TGG + Chr1:16832589-16832608 MsG0180001173.01.T01:intron 20.0%
!!! ATCGTGTTATTCTTATTAAA+GGG + Chr1:16832756-16832775 MsG0180001173.01.T01:intron 20.0%
!!! TGTAATTATGCAACTTTTAA+CGG + Chr1:16835105-16835124 MsG0180001173.01.T01:intron 20.0%
!!! TGTTTTATTTCACATTCTTT+AGG + Chr1:16835377-16835396 MsG0180001173.01.T01:intron 20.0%
!!! TTCTCAATTGTTGTTATTTT+TGG + Chr1:16831600-16831619 MsG0180001173.01.T01:CDS 20.0%
! AAAAACACTTAATAGAGAGT+TGG + Chr1:16835407-16835426 MsG0180001173.01.T01:CDS 25.0%
! AAAACACTTAATAGAGAGTT+GGG + Chr1:16835408-16835427 MsG0180001173.01.T01:CDS 25.0%
! AAAGGTCAATGTCAAATAAA+CGG - Chr1:16834286-16834305 None:intergenic 25.0%
! AAATTGCACAAAAATGTGAA+AGG - Chr1:16832318-16832337 None:intergenic 25.0%
! AATCTCAAGACTTGATTTAT+AGG - Chr1:16832896-16832915 None:intergenic 25.0%
! ACATGAAATGTAACTTATCT+TGG + Chr1:16834389-16834408 MsG0180001173.01.T01:intron 25.0%
! ACTCCTAATCCTAAATAAAT+AGG + Chr1:16834077-16834096 MsG0180001173.01.T01:intron 25.0%
! AGATAAGGATAGAGAATTAT+CGG + Chr1:16831500-16831519 MsG0180001173.01.T01:intron 25.0%
! AGGAAAAAAAATGGAAAGTT+AGG + Chr1:16833226-16833245 MsG0180001173.01.T01:intron 25.0%
! ATCTCAAAATTAACCTCTAA+TGG + Chr1:16835961-16835980 MsG0180001173.01.T01:CDS 25.0%
! ATTTAGGTGAAAACAAAGAA+AGG - Chr1:16835611-16835630 None:intergenic 25.0%
! ATTTGTTTGTCTTTAAGTGA+GGG + Chr1:16832231-16832250 MsG0180001173.01.T01:intron 25.0%
! CAATTATCAATAAGATGTCA+AGG - Chr1:16836408-16836427 None:intergenic 25.0%
! CAGTAATTATTTGTGTTCTT+AGG + Chr1:16834526-16834545 MsG0180001173.01.T01:intron 25.0%
! CTATCATTGAATTTGATTCA+TGG + Chr1:16833850-16833869 MsG0180001173.01.T01:intron 25.0%
! CTCCTAATCCTAAATAAATA+GGG + Chr1:16834078-16834097 MsG0180001173.01.T01:intron 25.0%
! GAATCATTGAAGTGAAAATT+GGG + Chr1:16833648-16833667 MsG0180001173.01.T01:intron 25.0%
! GTTATAATCAATAAAGCAAC+TGG - Chr1:16835345-16835364 None:intergenic 25.0%
! TAATCGCTAATTTACATGTT+GGG + Chr1:16832078-16832097 MsG0180001173.01.T01:intron 25.0%
! TAATTATTTGTGTTCTTAGG+TGG + Chr1:16834529-16834548 MsG0180001173.01.T01:intron 25.0%
! TCTAATCTCTCCTAATTATT+TGG - Chr1:16833820-16833839 None:intergenic 25.0%
! TCTTTGAGCATATCAAATAT+CGG - Chr1:16832506-16832525 None:intergenic 25.0%
! TGAATCATTGAAGTGAAAAT+TGG + Chr1:16833647-16833666 MsG0180001173.01.T01:intron 25.0%
! TTCAGGAAAAATATCAATTG+CGG + Chr1:16835818-16835837 MsG0180001173.01.T01:intron 25.0%
!! AAATGAAAAGCTTTGATATG+TGG + Chr1:16833480-16833499 MsG0180001173.01.T01:intron 25.0%
!! AGTAAATTTTTCTTCTAAGC+TGG - Chr1:16833521-16833540 None:intergenic 25.0%
!! TTCCCTATTTATTTAGGATT+AGG - Chr1:16834083-16834102 None:intergenic 25.0%
!!! AAAAGATGAGAGTTTTGTAT+TGG + Chr1:16833689-16833708 MsG0180001173.01.T01:intron 25.0%
!!! AAAGATGAGAGTTTTGTATT+GGG + Chr1:16833690-16833709 MsG0180001173.01.T01:intron 25.0%
!!! ATTTGGGTTGTATTATAGTT+TGG - Chr1:16833545-16833564 None:intergenic 25.0%
!!! TAGTTTTTGAGAAGATAGTA+AGG + Chr1:16834022-16834041 MsG0180001173.01.T01:intron 25.0%
!!! TGTTTTCAAGAAGACTTAAA+TGG + Chr1:16833991-16834010 MsG0180001173.01.T01:intron 25.0%
!!! TTCAACTGTTTTATTGTTAG+AGG + Chr1:16832914-16832933 MsG0180001173.01.T01:intron 25.0%
AAAAAGTTTACGCATGATAG+AGG - Chr1:16834311-16834330 None:intergenic 30.0%
AAAAATGGAAAGTTAGGACA+TGG + Chr1:16833232-16833251 MsG0180001173.01.T01:intron 30.0%
AAACTAAACACTAACCTCAA+TGG - Chr1:16836352-16836371 None:intergenic 30.0%
AAGAGGTCATATAAAACACT+TGG - Chr1:16836258-16836277 None:intergenic 30.0%
AAGGAAACTAGCAAATTAGT+AGG - Chr1:16833951-16833970 None:intergenic 30.0%
AATGAGTGTAAGCAGTATTT+AGG - Chr1:16835627-16835646 None:intergenic 30.0%
AATTCAGCTGAAAAACTCTT+CGG - Chr1:16831424-16831443 None:intergenic 30.0%
ACTGAGAAACTTTCCTTATA+TGG - Chr1:16832454-16832473 None:intergenic 30.0%
AGGAAACTAGCAAATTAGTA+GGG - Chr1:16833950-16833969 None:intergenic 30.0%
AGGAATTGAGCTTGTAAATA+TGG + Chr1:16832112-16832131 MsG0180001173.01.T01:intron 30.0%
ATGAAGCACGAATACATATA+TGG + Chr1:16831668-16831687 MsG0180001173.01.T01:intron 30.0%
ATGCAGTTAGAGATTATCAA+CGG + Chr1:16835267-16835286 MsG0180001173.01.T01:CDS 30.0%
CAATATTGAGCTAGATGATA+GGG - Chr1:16836028-16836047 None:intergenic 30.0%
CACAATTGAAAGTAATGATC+TGG + Chr1:16835728-16835747 MsG0180001173.01.T01:intron 30.0%
CATTTGTTTGTCTTTAAGTG+AGG + Chr1:16832230-16832249 MsG0180001173.01.T01:intron 30.0%
CCTAAATAAATAGGGAAATC+AGG + Chr1:16834086-16834105 MsG0180001173.01.T01:intron 30.0%
CCTGATTTCCCTATTTATTT+AGG - Chr1:16834089-16834108 None:intergenic 30.0%
CTCACTTAAAGACAAACAAA+TGG - Chr1:16832232-16832251 None:intergenic 30.0%
GAACCAATACAAAAAGATGA+TGG - Chr1:16833123-16833142 None:intergenic 30.0%
GATAATGTCAAACGTAAAGT+TGG - Chr1:16832718-16832737 None:intergenic 30.0%
GATAATTGGAAAGGAAATTC+AGG + Chr1:16836186-16836205 MsG0180001173.01.T01:CDS 30.0%
GTAATCGCTAATTTACATGT+TGG + Chr1:16832077-16832096 MsG0180001173.01.T01:intron 30.0%
GTCTCTATCATATGTATAGT+GGG - Chr1:16833406-16833425 None:intergenic 30.0%
GTCTTATATCCCTATACATA+GGG - Chr1:16834059-16834078 None:intergenic 30.0%
TAAAAACTCACACACACAAA+GGG - Chr1:16832021-16832040 None:intergenic 30.0%
TAAACTAGAAGATACAAGCA+AGG + Chr1:16833444-16833463 MsG0180001173.01.T01:intron 30.0%
TAACTTATGTCTGTAAGACT+TGG + Chr1:16831915-16831934 MsG0180001173.01.T01:intron 30.0%
TATCGATGCAAATGTCAAAA+GGG - Chr1:16832282-16832301 None:intergenic 30.0%
TATTGAACTGCATTCGTATA+GGG + Chr1:16835646-16835665 MsG0180001173.01.T01:intron 30.0%
TCAATATTGAGCTAGATGAT+AGG - Chr1:16836029-16836048 None:intergenic 30.0%
TCAGGAAGAAAACAAAATCT+TGG + Chr1:16835148-16835167 MsG0180001173.01.T01:intron 30.0%
TCTCATTTACTCAAAGACTA+AGG - Chr1:16833970-16833989 None:intergenic 30.0%
TGAGTTTATATTGCAATACC+TGG + Chr1:16834774-16834793 MsG0180001173.01.T01:intron 30.0%
TGATGGGAAGCTAAAATTAA+CGG + Chr1:16834456-16834475 MsG0180001173.01.T01:intron 30.0%
TGTCTCTATCATATGTATAG+TGG - Chr1:16833407-16833426 None:intergenic 30.0%
TTATTGAACTGCATTCGTAT+AGG + Chr1:16835645-16835664 MsG0180001173.01.T01:intron 30.0%
TTGTAGTTTAGCAATCTGTA+GGG - Chr1:16834874-16834893 None:intergenic 30.0%
! AATGTTTCATAGGATTTGGT+TGG - Chr1:16832683-16832702 None:intergenic 30.0%
! AATTATGCAACTTTTAACGG+AGG + Chr1:16835108-16835127 MsG0180001173.01.T01:intron 30.0%
! ACATCTAAATCTTTTGATGG+TGG + Chr1:16836063-16836082 MsG0180001173.01.T01:CDS 30.0%
! AGTCTTATATCCCTATACAT+AGG - Chr1:16834060-16834079 None:intergenic 30.0%
! GAAAATTTAAAGAGAGCGTA+TGG + Chr1:16833290-16833309 MsG0180001173.01.T01:intron 30.0%
! GGAACATCTAAATCTTTTGA+TGG + Chr1:16836060-16836079 MsG0180001173.01.T01:CDS 30.0%
! GGCTTATGACTAATGATTTT+TGG + Chr1:16834827-16834846 MsG0180001173.01.T01:intron 30.0%
! TATCATCTAGCTCAATATTG+AGG + Chr1:16836028-16836047 MsG0180001173.01.T01:CDS 30.0%
! TCAATTTTCACCTCTAAACT+AGG - Chr1:16833345-16833364 None:intergenic 30.0%
! TGGCATCATCTTTATCTTTT+AGG - Chr1:16836332-16836351 None:intergenic 30.0%
! TGTTTTCTCTCTCTAGATTA+AGG - Chr1:16831010-16831029 None:intergenic 30.0%
!! ACTATTATTTTGTTTCCTGG+TGG + Chr1:16832136-16832155 MsG0180001173.01.T01:intron 30.0%
!! CTATTATTTTGTTTCCTGGT+GGG + Chr1:16832137-16832156 MsG0180001173.01.T01:intron 30.0%
!! GGTACTATTATTTTGTTTCC+TGG + Chr1:16832133-16832152 MsG0180001173.01.T01:intron 30.0%
!! TCAGCTCTTGATTTTTGTTT+TGG - Chr1:16835007-16835026 None:intergenic 30.0%
!! TGATGAAAAGAAAGCATCAA+TGG + Chr1:16834609-16834628 MsG0180001173.01.T01:CDS 30.0%
!! TGTTGACTTCTTGATACTAT+CGG + Chr1:16832844-16832863 MsG0180001173.01.T01:intron 30.0%
!! TTGAGATGAGAGTATTATGA+TGG + Chr1:16833619-16833638 MsG0180001173.01.T01:intron 30.0%
!!! AATTTCAGAACTAGTTTTCG+AGG - Chr1:16835769-16835788 None:intergenic 30.0%
!!! CATCTTTTTGTATTGGTTCT+CGG + Chr1:16833124-16833143 MsG0180001173.01.T01:intron 30.0%
AAAAACTCACACACACAAAG+GGG - Chr1:16832020-16832039 None:intergenic 35.0%
AAACCCTAACCCTATGTATA+GGG + Chr1:16834047-16834066 MsG0180001173.01.T01:intron 35.0%
AAAGCGGTTCAGCAATATAA+AGG + Chr1:16836590-16836609 MsG0180001173.01.T01:CDS 35.0%
AAGCCACAGACCAAATAATT+AGG + Chr1:16833807-16833826 MsG0180001173.01.T01:intron 35.0%
AAGCGGTTCAGCAATATAAA+GGG + Chr1:16836591-16836610 MsG0180001173.01.T01:CDS 35.0%
ACTCACAAATCCTAGTTTAG+AGG + Chr1:16833332-16833351 MsG0180001173.01.T01:intron 35.0%
AGATAAAGATGATGCCATTG+AGG + Chr1:16836335-16836354 MsG0180001173.01.T01:CDS 35.0%
AGGGAGGATAAAGGAATAAA+AGG - Chr1:16832783-16832802 None:intergenic 35.0%
ATATCCCTATACATAGGGTT+AGG - Chr1:16834054-16834073 None:intergenic 35.0%
ATCGATGCAAATGTCAAAAG+GGG - Chr1:16832281-16832300 None:intergenic 35.0%
ATTGAACTGCATTCGTATAG+GGG + Chr1:16835647-16835666 MsG0180001173.01.T01:intron 35.0%
CATTAGTCATAAGCCAGATT+CGG - Chr1:16834822-16834841 None:intergenic 35.0%
CTAAAAACTCACACACACAA+AGG - Chr1:16832022-16832041 None:intergenic 35.0%
CTTGTAGTTTAGCAATCTGT+AGG - Chr1:16834875-16834894 None:intergenic 35.0%
GACACTGGAAAGAAGTAAAA+CGG + Chr1:16836092-16836111 MsG0180001173.01.T01:CDS 35.0%
GCAACTTCAAAGTTCAAACA+TGG - Chr1:16832184-16832203 None:intergenic 35.0%
GCATATCAAATATCGGACAA+TGG - Chr1:16832499-16832518 None:intergenic 35.0%
GCTAATTGTTCCTATCTAAG+AGG + Chr1:16833150-16833169 MsG0180001173.01.T01:intron 35.0%
GTTGTGCTTGTATAGAGAAA+AGG + Chr1:16833016-16833035 MsG0180001173.01.T01:intron 35.0%
GTTTCATCATCACTTCTTTC+AGG + Chr1:16835130-16835149 MsG0180001173.01.T01:intron 35.0%
TAAACCCTAACCCTATGTAT+AGG + Chr1:16834046-16834065 MsG0180001173.01.T01:intron 35.0%
TATCCCTATACATAGGGTTA+GGG - Chr1:16834053-16834072 None:intergenic 35.0%
TATTGGGTCTTACTTGGTTT+GGG + Chr1:16833706-16833725 MsG0180001173.01.T01:intron 35.0%
TCTCCTAATTATTTGGTCTG+TGG - Chr1:16833813-16833832 None:intergenic 35.0%
TCTCTAAACGATCCAGAAAA+TGG - Chr1:16831250-16831269 None:intergenic 35.0%
TGAAGTTGCAGCTGAAAAAT+GGG + Chr1:16832195-16832214 MsG0180001173.01.T01:intron 35.0%
TGATTCATGGCAAGACATTA+TGG + Chr1:16833863-16833882 MsG0180001173.01.T01:intron 35.0%
TGGTTGAATGAGTAACTTTG+AGG - Chr1:16836132-16836151 None:intergenic 35.0%
TTATCTGTCAGATGTTAGCA+AGG + Chr1:16836448-16836467 MsG0180001173.01.T01:intron 35.0%
TTCAATGTAATCGCATGTGT+CGG + Chr1:16831748-16831767 MsG0180001173.01.T01:intron 35.0%
TTGAAGTTGCAGCTGAAAAA+TGG + Chr1:16832194-16832213 MsG0180001173.01.T01:intron 35.0%
TTTATTCCTTTATCCTCCCT+TGG + Chr1:16832783-16832802 MsG0180001173.01.T01:intron 35.0%
! CTTTGTGTGTGTGAGTTTTT+AGG + Chr1:16832020-16832039 MsG0180001173.01.T01:intron 35.0%
! GAGCCATCATCTTTTTGTAT+TGG + Chr1:16833117-16833136 MsG0180001173.01.T01:intron 35.0%
! GTATCGATGCAAATGTCAAA+AGG - Chr1:16832283-16832302 None:intergenic 35.0%
! GTTTTGTATTGGGTCTTACT+TGG + Chr1:16833700-16833719 MsG0180001173.01.T01:intron 35.0%
! TGACACAATGAATGCTTTTG+TGG + Chr1:16833176-16833195 MsG0180001173.01.T01:intron 35.0%
! TGATATAGTCTTAGAGTGCA+CGG + Chr1:16833200-16833219 MsG0180001173.01.T01:intron 35.0%
! TTGCATTCACTCTTAGTTCT+AGG + Chr1:16832817-16832836 MsG0180001173.01.T01:intron 35.0%
! TTTTCTGGATCGTTTAGAGA+AGG + Chr1:16831250-16831269 MsG0180001173.01.T01:CDS 35.0%
!! AAAGGTACTTAAGAGACATG+TGG - Chr1:16833381-16833400 None:intergenic 35.0%
!! AATGCTGAGATTTGTTAGGT+TGG + Chr1:16831957-16831976 MsG0180001173.01.T01:intron 35.0%
!! AGTTTTCGAGGTTAACAGAT+AGG - Chr1:16835757-16835776 None:intergenic 35.0%
!! GAGTTCATGAATTTGTTGCA+CGG + Chr1:16831328-16831347 MsG0180001173.01.T01:CDS 35.0%
!! GTTTTCGAGGTTAACAGATA+GGG - Chr1:16835756-16835775 None:intergenic 35.0%
!! TCAATATTGAGGAGTGCTAA+AGG + Chr1:16836039-16836058 MsG0180001173.01.T01:CDS 35.0%
!! TCATATGTATAGTGGGCAAA+AGG - Chr1:16833399-16833418 None:intergenic 35.0%
!! TGTGTTGACTTGACCATATA+AGG + Chr1:16832438-16832457 MsG0180001173.01.T01:intron 35.0%
!!! GTTAGGTTGGATATTTTTCG+TGG + Chr1:16831970-16831989 MsG0180001173.01.T01:intron 35.0%
AAAGACTGTTCAGTTTGCCT+TGG + Chr1:16834956-16834975 MsG0180001173.01.T01:CDS 40.0%
AAAGTTAGGACATGGAGATG+AGG + Chr1:16833240-16833259 MsG0180001173.01.T01:intron 40.0%
AAGTCATGCCTGTCAAACAA+TGG + Chr1:16835499-16835518 MsG0180001173.01.T01:CDS 40.0%
ACCAATAATATGATCCCACC+AGG - Chr1:16832154-16832173 None:intergenic 40.0%
ACGACACTCACATGTAAACA+CGG + Chr1:16831700-16831719 MsG0180001173.01.T01:intron 40.0%
ACTACTAGCGTAAGAACAGA+AGG + Chr1:16833041-16833060 MsG0180001173.01.T01:intron 40.0%
AGTTTGAGGGGAAATTCTAG+CGG + Chr1:16835859-16835878 MsG0180001173.01.T01:CDS 40.0%
ATACTATCCTCTGTATCTGC+CGG - Chr1:16836234-16836253 None:intergenic 40.0%
ATATGACCTCTTGCAGAAAG+AGG + Chr1:16836266-16836285 MsG0180001173.01.T01:CDS 40.0%
ATGCAATGCCATGTAAACCA+AGG - Chr1:16832803-16832822 None:intergenic 40.0%
CAGAATGCATAGACAAAAGG+TGG + Chr1:16835172-16835191 MsG0180001173.01.T01:CDS 40.0%
CAGTGAAAGTGGAGCTTAAT+CGG + Chr1:16831359-16831378 MsG0180001173.01.T01:CDS 40.0%
CTGTTGTGGTTGCAAATGAA+TGG + Chr1:16835460-16835479 MsG0180001173.01.T01:CDS 40.0%
CTTAGGCAAGAATCCATTAG+AGG - Chr1:16835977-16835996 None:intergenic 40.0%
GAAACAGATTGAGATTTGCC+AGG + Chr1:16835028-16835047 MsG0180001173.01.T01:CDS 40.0%
GAAGAGCTAGCAAGAGATTA+AGG + Chr1:16833587-16833606 MsG0180001173.01.T01:intron 40.0%
GAAGTTGCAGCTGAAAAATG+GGG + Chr1:16832196-16832215 MsG0180001173.01.T01:intron 40.0%
GAGAGAAAAAGCTGTTGAAG+AGG + Chr1:16831566-16831585 MsG0180001173.01.T01:CDS 40.0%
GCACGGAGAAGGAAAAAAAA+TGG + Chr1:16833217-16833236 MsG0180001173.01.T01:intron 40.0%
GGACAGAATGCATAGACAAA+AGG + Chr1:16835169-16835188 MsG0180001173.01.T01:CDS 40.0%
GTATTGGGTCTTACTTGGTT+TGG + Chr1:16833705-16833724 MsG0180001173.01.T01:intron 40.0%
GTGGGATCATATTATTGGTG+TGG + Chr1:16832155-16832174 MsG0180001173.01.T01:intron 40.0%
GTTTGTCTTTAAGTGAGGGA+GGG + Chr1:16832235-16832254 MsG0180001173.01.T01:intron 40.0%
TACAAGAGAACAGAGCAAAG+CGG + Chr1:16836574-16836593 MsG0180001173.01.T01:CDS 40.0%
TAGGGCTCAAAGCAATACTT+TGG - Chr1:16834497-16834516 None:intergenic 40.0%
TAGTGCAGCTTCTTTGGATT+TGG - Chr1:16834925-16834944 None:intergenic 40.0%
TATCAACTCCACCTAGTGAT+TGG - Chr1:16835939-16835958 None:intergenic 40.0%
TCCTGGTGGGATCATATTAT+TGG + Chr1:16832150-16832169 MsG0180001173.01.T01:intron 40.0%
TCTTCAAGCCATTGTTTGAC+AGG - Chr1:16835510-16835529 None:intergenic 40.0%
TGAGGCAAAGAAGATGAGAA+GGG + Chr1:16836503-16836522 MsG0180001173.01.T01:CDS 40.0%
TGCAATGCCATGTAAACCAA+GGG - Chr1:16832802-16832821 None:intergenic 40.0%
TGTAAACCAAGGGAGGATAA+AGG - Chr1:16832792-16832811 None:intergenic 40.0%
TGTTTGTCTTTAAGTGAGGG+AGG + Chr1:16832234-16832253 MsG0180001173.01.T01:intron 40.0%
TTACGCATGATAGAGGCAAA+AGG - Chr1:16834304-16834323 None:intergenic 40.0%
TTATCCTCCCTTGGTTTACA+TGG + Chr1:16832792-16832811 MsG0180001173.01.T01:intron 40.0%
TTCAAGTAGTGCAGCTTCTT+TGG - Chr1:16834931-16834950 None:intergenic 40.0%
TTGAACTGCATTCGTATAGG+GGG + Chr1:16835648-16835667 MsG0180001173.01.T01:intron 40.0%
TTGAGGCAAAGAAGATGAGA+AGG + Chr1:16836502-16836521 MsG0180001173.01.T01:CDS 40.0%
TTTGTCTTTAAGTGAGGGAG+GGG + Chr1:16832236-16832255 MsG0180001173.01.T01:intron 40.0%
! AAAGAAGTAAAACGGTGCTG+AGG + Chr1:16836100-16836119 MsG0180001173.01.T01:CDS 40.0%
! AAGAAGTAAAACGGTGCTGA+GGG + Chr1:16836101-16836120 MsG0180001173.01.T01:CDS 40.0%
! AAGAGCTGTCAAAGGTTGAT+GGG + Chr1:16834440-16834459 MsG0180001173.01.T01:intron 40.0%
! AGAACCAGCTAATTTCTGGA+AGG + Chr1:16836631-16836650 MsG0180001173.01.T01:CDS 40.0%
! CTTGGTTGACTTAGTTCAAC+TGG + Chr1:16831933-16831952 MsG0180001173.01.T01:intron 40.0%
! CTTTGGTTTCTTCGAGAGAT+TGG - Chr1:16836152-16836171 None:intergenic 40.0%
! GAGGGAAGAAGTATGAACAA+TGG + Chr1:16835901-16835920 MsG0180001173.01.T01:CDS 40.0%
! TGGCAATGCTGAGATTTGTT+AGG + Chr1:16831953-16831972 MsG0180001173.01.T01:intron 40.0%
! TGTGTCATTGCCTCTTAGAT+AGG - Chr1:16833163-16833182 None:intergenic 40.0%
!! AAGCTGAGATTAAAGCGTTG+AGG + Chr1:16831529-16831548 MsG0180001173.01.T01:CDS 40.0%
!! CATGAATTTGTTGCACGGTT+CGG + Chr1:16831333-16831352 MsG0180001173.01.T01:CDS 40.0%
!! TGTGTGTGTGAGTTTTTAGG+TGG + Chr1:16832023-16832042 MsG0180001173.01.T01:intron 40.0%
!!! AATCTTTTGATGGTGGCTCA+AGG + Chr1:16836070-16836089 MsG0180001173.01.T01:CDS 40.0%
AAAAGCTCACCCAAACTGTG+AGG + Chr1:16835204-16835223 MsG0180001173.01.T01:CDS 45.0%
AAAGCTCACCCAAACTGTGA+GGG + Chr1:16835205-16835224 MsG0180001173.01.T01:CDS 45.0%
AACGATCCAGAAAATGGTGC+CGG - Chr1:16831244-16831263 None:intergenic 45.0%
AAGGAGGGTAGATCATATGG+AGG + Chr1:16833761-16833780 MsG0180001173.01.T01:intron 45.0%
AATGCCATGTAAACCAAGGG+AGG - Chr1:16832799-16832818 None:intergenic 45.0%
ACCTGGCGAGAAAGAATTGA+TGG + Chr1:16834791-16834810 MsG0180001173.01.T01:intron 45.0%
ACTAGCGTAAGAACAGAAGG+TGG + Chr1:16833044-16833063 MsG0180001173.01.T01:intron 45.0%
AGAAACCAAAGAGAGAGAGG+CGG + Chr1:16836161-16836180 MsG0180001173.01.T01:CDS 45.0%
AGAATTTGAATGCGCGAGTG+AGG + Chr1:16831157-16831176 MsG0180001173.01.T01:intron 45.0%
AGAGAGAGGCGGATGATAAT+TGG + Chr1:16836172-16836191 MsG0180001173.01.T01:CDS 45.0%
AGATACGTTGACCAAAGCCA+TGG + Chr1:16836476-16836495 MsG0180001173.01.T01:CDS 45.0%
AGCAAGGAGGGTAGATCATA+TGG + Chr1:16833758-16833777 MsG0180001173.01.T01:intron 45.0%
AGCAATTCTTGCTCCTTTGG+AGG + Chr1:16834708-16834727 MsG0180001173.01.T01:CDS 45.0%
AGGACATGGAGATGAGGTTT+GGG + Chr1:16833246-16833265 MsG0180001173.01.T01:intron 45.0%
AGGGTTTCGTTTCAGATCGA+CGG + Chr1:16831177-16831196 MsG0180001173.01.T01:intron 45.0%
AGTAGCTTCCATGGAAAAGG+AGG + Chr1:16836527-16836546 MsG0180001173.01.T01:CDS 45.0%
CGAAGAAACCAAAGAGAGAG+AGG + Chr1:16836158-16836177 MsG0180001173.01.T01:CDS 45.0%
CGAAGCAATTCTTGCTCCTT+TGG + Chr1:16834705-16834724 MsG0180001173.01.T01:CDS 45.0%
CGATTAAGCTCCACTTTCAC+TGG - Chr1:16831361-16831380 None:intergenic 45.0%
CTGTCAGATGTTAGCAAGGA+AGG + Chr1:16836452-16836471 MsG0180001173.01.T01:intron 45.0%
CTGTGCTGCAAGCCTATTAT+GGG - Chr1:16833088-16833107 None:intergenic 45.0%
CTTCTTTGCCTCAACTTCCA+TGG - Chr1:16836496-16836515 None:intergenic 45.0%
GAAGAGCTGTCAAAGGTTGA+TGG + Chr1:16834439-16834458 MsG0180001173.01.T01:intron 45.0%
GAATTTGAATGCGCGAGTGA+GGG + Chr1:16831158-16831177 MsG0180001173.01.T01:intron 45.0%
GAGGCGGATGATAATTGGAA+AGG + Chr1:16836177-16836196 MsG0180001173.01.T01:CDS 45.0%
GCTCAGAACCAGCTAATTTC+TGG + Chr1:16836627-16836646 MsG0180001173.01.T01:CDS 45.0%
GGAAGTAGCTTCCATGGAAA+AGG + Chr1:16836524-16836543 MsG0180001173.01.T01:CDS 45.0%
GGAGCAAGAATTGCTTCGAT+CGG - Chr1:16834703-16834722 None:intergenic 45.0%
GGCGAGAAAGAATTGATGGA+GGG + Chr1:16834795-16834814 MsG0180001173.01.T01:intron 45.0%
GTTCATACTTCTTCCCTCTG+CGG - Chr1:16835899-16835918 None:intergenic 45.0%
TAAGCCAAATGACTTCCCAC+CGG + Chr1:16836212-16836231 MsG0180001173.01.T01:CDS 45.0%
TAGGACATGGAGATGAGGTT+TGG + Chr1:16833245-16833264 MsG0180001173.01.T01:intron 45.0%
TCCATCAATTCTTTCTCGCC+AGG - Chr1:16834795-16834814 None:intergenic 45.0%
TGAAGAACGACGATTCTTGC+AGG + Chr1:16835524-16835543 MsG0180001173.01.T01:CDS 45.0%
TGCCAAGGTAACAGCAAACA+GGG + Chr1:16835434-16835453 MsG0180001173.01.T01:CDS 45.0%
TGGCGAGAAAGAATTGATGG+AGG + Chr1:16834794-16834813 MsG0180001173.01.T01:intron 45.0%
TGTGCTGCAAGCCTATTATG+GGG - Chr1:16833087-16833106 None:intergenic 45.0%
TTCATGACCAGCTTTCCTCA+AGG - Chr1:16836298-16836317 None:intergenic 45.0%
TTCTGCTAGACAGCAGAGTA+TGG + Chr1:16831297-16831316 MsG0180001173.01.T01:CDS 45.0%
TTGCAGCAGAAGCTACTCTT+CGG + Chr1:16834641-16834660 MsG0180001173.01.T01:CDS 45.0%
! AGAAGTAAAACGGTGCTGAG+GGG + Chr1:16836102-16836121 MsG0180001173.01.T01:CDS 45.0%
! AGCTTTAGTTCAGCCTCCAA+AGG - Chr1:16834724-16834743 None:intergenic 45.0%
! AGGCTGAACTAAAGCTTGCT+CGG + Chr1:16834728-16834747 MsG0180001173.01.T01:CDS 45.0%
! ATAGGGATGACCTGAGTTGA+GGG - Chr1:16836011-16836030 None:intergenic 45.0%
! CCTCCTTGCTAGTGCTTTTA+CGG - Chr1:16833748-16833767 None:intergenic 45.0%
! CTCCTTGCTAGTGCTTTTAC+GGG - Chr1:16833747-16833766 None:intergenic 45.0%
! TGGTGTCAAACACTGTTGGA+CGG + Chr1:16831779-16831798 MsG0180001173.01.T01:intron 45.0%
! TTACATGTGAGTGTCGTGTC+TGG - Chr1:16831697-16831716 None:intergenic 45.0%
! TTTGCCAGGTATCGCAATCT+TGG + Chr1:16835042-16835061 MsG0180001173.01.T01:intron 45.0%
!! AAGCGTTGAGGCATTCTGAA+CGG + Chr1:16831541-16831560 MsG0180001173.01.T01:CDS 45.0%
!! CGTAAAAGCACTAGCAAGGA+GGG + Chr1:16833746-16833765 MsG0180001173.01.T01:intron 45.0%
!! GGTTCTGAGCACTGTTTACA+GGG - Chr1:16836617-16836636 None:intergenic 45.0%
!! GTGTTGGTGTCAAACACTGT+TGG + Chr1:16831775-16831794 MsG0180001173.01.T01:intron 45.0%
!! TACCCTGTTTGCTGTTACCT+TGG - Chr1:16835439-16835458 None:intergenic 45.0%
!! TGGTTCTGAGCACTGTTTAC+AGG - Chr1:16836618-16836637 None:intergenic 45.0%
!! TGTTTGCTGTTACCTTGGCA+CGG - Chr1:16835434-16835453 None:intergenic 45.0%
!! TTCTAGCTCCCTCACAGTTT+GGG - Chr1:16835216-16835235 None:intergenic 45.0%
!!! CATGTTGGGCTTGTTTTGTG+AGG + Chr1:16832092-16832111 MsG0180001173.01.T01:intron 45.0%
!! AAAATATTAAAAGAAAATAA+GGG - Chr1:16832636-16832655 None:intergenic 5.0%
!! TAAAATATTAAAAGAAAATA+AGG - Chr1:16832637-16832656 None:intergenic 5.0%
!! TTTATATCAAAAAATAAATA+AGG - Chr1:16835583-16835602 None:intergenic 5.0%
!!! ATTTTTTATTTTATTTTTTC+AGG + Chr1:16835801-16835820 MsG0180001173.01.T01:intron 5.0%
!!! TAATTGTTTTTTTTTTTTTT+TGG + Chr1:16836374-16836393 MsG0180001173.01.T01:intron 5.0%
!!! TATTATGTTTTTTTTTTTTT+GGG + Chr1:16831857-16831876 MsG0180001173.01.T01:intron 5.0%
!!! TTATTATGTTTTTTTTTTTT+TGG + Chr1:16831856-16831875 MsG0180001173.01.T01:intron 5.0%
ACGGCGATGGAGGAGATTTA+CGG + Chr1:16831196-16831215 MsG0180001173.01.T01:intron 50.0%
AGAAAGAGGTCGTTGCCTTG+AGG + Chr1:16836280-16836299 MsG0180001173.01.T01:CDS 50.0%
AGAACTTCGTCGAGAAGACG+CGG + Chr1:16831274-16831293 MsG0180001173.01.T01:CDS 50.0%
AGCAAACAGGGTAGCTGTTG+TGG + Chr1:16835446-16835465 MsG0180001173.01.T01:CDS 50.0%
AGCAGAAGCTACTCTTCGGA+GGG + Chr1:16834645-16834664 MsG0180001173.01.T01:CDS 50.0%
AGCGTAAGAACAGAAGGTGG+TGG + Chr1:16833047-16833066 MsG0180001173.01.T01:intron 50.0%
AGTCTTAGAGTGCACGGAGA+AGG + Chr1:16833206-16833225 MsG0180001173.01.T01:intron 50.0%
ATCATCCGCCTCTCTCTCTT+TGG - Chr1:16836169-16836188 None:intergenic 50.0%
ATGGAGGAGATTTACGGCGA+CGG + Chr1:16831202-16831221 MsG0180001173.01.T01:CDS 50.0%
ATTGATGGAGGGACCGAATC+TGG + Chr1:16834806-16834825 MsG0180001173.01.T01:intron 50.0%
CAACGACCTCTTTCTGCAAG+AGG - Chr1:16836275-16836294 None:intergenic 50.0%
CATCATCCTTCTGAGCAGCA+TGG - Chr1:16834672-16834691 None:intergenic 50.0%
CCATAATAGGCTTGCAGCAC+AGG + Chr1:16833086-16833105 MsG0180001173.01.T01:intron 50.0%
CCTGTGCTGCAAGCCTATTA+TGG - Chr1:16833089-16833108 None:intergenic 50.0%
CGGCTTGAGAATGAAGTTCG+AGG + Chr1:16831379-16831398 MsG0180001173.01.T01:CDS 50.0%
CTAGAAGAGTCAGTCCTTGC+AGG + Chr1:16835230-16835249 MsG0180001173.01.T01:CDS 50.0%
GACCAAAGCCATGGAAGTTG+AGG + Chr1:16836485-16836504 MsG0180001173.01.T01:CDS 50.0%
GAGAAGGGAAGTAGCTTCCA+TGG + Chr1:16836518-16836537 MsG0180001173.01.T01:CDS 50.0%
GATAGGGATGACCTGAGTTG+AGG - Chr1:16836012-16836031 None:intergenic 50.0%
GCAAGAATTGCTTCGATCGG+AGG - Chr1:16834700-16834719 None:intergenic 50.0%
GCATAGACAAAAGGTGGCAG+AGG + Chr1:16835178-16835197 MsG0180001173.01.T01:CDS 50.0%
GCTGTCTGAAGAGCTGTCAA+AGG + Chr1:16834432-16834451 MsG0180001173.01.T01:intron 50.0%
GTGCCAAGGTAACAGCAAAC+AGG + Chr1:16835433-16835452 MsG0180001173.01.T01:CDS 50.0%
GTGGTTACCCAAGTTCGAAC+CGG + Chr1:16831989-16832008 MsG0180001173.01.T01:intron 50.0%
TATCCTCTGTATCTGCCGGT+GGG - Chr1:16836230-16836249 None:intergenic 50.0%
TCAATTGCGGCTCAAAGTGC+TGG + Chr1:16835831-16835850 MsG0180001173.01.T01:CDS 50.0%
TCGTCCAAGATTGCGATACC+TGG - Chr1:16835049-16835068 None:intergenic 50.0%
TCTTCTCGTCGCCAATCACT+AGG + Chr1:16835925-16835944 MsG0180001173.01.T01:CDS 50.0%
TGAGGGGATGGTGTTCTCTT+AGG - Chr1:16835994-16836013 None:intergenic 50.0%
TGCCTCAACTTCCATGGCTT+TGG - Chr1:16836490-16836509 None:intergenic 50.0%
TGGTTACCCAAGTTCGAACC+GGG + Chr1:16831990-16832009 MsG0180001173.01.T01:intron 50.0%
TGTTCAGTTTGCCTTGGCCA+AGG + Chr1:16834962-16834981 MsG0180001173.01.T01:CDS 50.0%
! ACTAAAGCTTGCTCGGCAAG+AGG + Chr1:16834735-16834754 MsG0180001173.01.T01:CDS 50.0%
! AGCAGCTACCTCCTTTTCCA+TGG - Chr1:16836538-16836557 None:intergenic 50.0%
! AGTGCTGGAGGAGAGTTTGA+GGG + Chr1:16835846-16835865 MsG0180001173.01.T01:CDS 50.0%
! CGCATGTGTCGGTATTGTGT+TGG + Chr1:16831759-16831778 MsG0180001173.01.T01:intron 50.0%
! TAGGGATGACCTGAGTTGAG+GGG - Chr1:16836010-16836029 None:intergenic 50.0%
!! AAGTGCTGGAGGAGAGTTTG+AGG + Chr1:16835845-16835864 MsG0180001173.01.T01:CDS 50.0%
!! CCGTAAAAGCACTAGCAAGG+AGG + Chr1:16833745-16833764 MsG0180001173.01.T01:intron 50.0%
!! CTTCTAGCTCCCTCACAGTT+TGG - Chr1:16835217-16835236 None:intergenic 50.0%
!! CTTGGTTTGGGCATGTGTAG+TGG + Chr1:16833718-16833737 MsG0180001173.01.T01:intron 50.0%
!! GACCCGTAAAAGCACTAGCA+AGG + Chr1:16833742-16833761 MsG0180001173.01.T01:intron 50.0%
CACACACAAAGGGGAGATCC+CGG - Chr1:16832011-16832030 None:intergenic 55.0%
CAGCAGAAGCTACTCTTCGG+AGG + Chr1:16834644-16834663 MsG0180001173.01.T01:CDS 55.0%
CTATCCTCTGTATCTGCCGG+TGG - Chr1:16836231-16836250 None:intergenic 55.0%
GAACACCATCCCCTCAACTC+AGG + Chr1:16835998-16836017 MsG0180001173.01.T01:CDS 55.0%
GAAGAGTCAGTCCTTGCAGG+TGG + Chr1:16835233-16835252 MsG0180001173.01.T01:CDS 55.0%
GTCGTTGCCTTGAGGAAAGC+TGG + Chr1:16836288-16836307 MsG0180001173.01.T01:CDS 55.0%
GTGCTGGAGGAGAGTTTGAG+GGG + Chr1:16835847-16835866 MsG0180001173.01.T01:CDS 55.0%
TCGTTTCAGATCGACGGCGA+TGG + Chr1:16831183-16831202 MsG0180001173.01.T01:intron 55.0%
TCTCGTCGCCAATCACTAGG+TGG + Chr1:16835928-16835947 MsG0180001173.01.T01:CDS 55.0%
TCTGCCGGTGGGAAGTCATT+TGG - Chr1:16836219-16836238 None:intergenic 55.0%
TTTCAGATCGACGGCGATGG+AGG + Chr1:16831186-16831205 MsG0180001173.01.T01:intron 55.0%
! CGGTTCGGATCCAGTGAAAG+TGG + Chr1:16831348-16831367 MsG0180001173.01.T01:CDS 55.0%
! GATGACCTGAGTTGAGGGGA+TGG - Chr1:16836006-16836025 None:intergenic 55.0%
! GGAGATCCCGGTTCGAACTT+GGG - Chr1:16831999-16832018 None:intergenic 55.0%
!! ATTGCGGCTCAAAGTGCTGG+AGG + Chr1:16835834-16835853 MsG0180001173.01.T01:CDS 55.0%
!! TGATGGTGGCTCAAGGACAC+TGG + Chr1:16836077-16836096 MsG0180001173.01.T01:CDS 55.0%
AGTAGTCGCAGCACCGCAGA+GGG + Chr1:16835883-16835902 MsG0180001173.01.T01:CDS 60.0%
CTTCCCACCGGCAGATACAG+AGG + Chr1:16836224-16836243 MsG0180001173.01.T01:CDS 60.0%
GAGGAGATTTACGGCGACGG+AGG + Chr1:16831205-16831224 MsG0180001173.01.T01:CDS 60.0%
GAGGGTCCATGCTGCTCAGA+AGG + Chr1:16834663-16834682 MsG0180001173.01.T01:CDS 60.0%
GATTTACGGCGACGGAGGAG+CGG + Chr1:16831210-16831229 MsG0180001173.01.T01:CDS 60.0%
GTGAGGGAGGGGTGATGCAT+AGG + Chr1:16832247-16832266 MsG0180001173.01.T01:intron 60.0%
TAGAGAGTTGGGCCGTGCCA+AGG + Chr1:16835419-16835438 MsG0180001173.01.T01:CDS 60.0%
TTGCTGCTGCACCACCTGCA+AGG - Chr1:16835247-16835266 None:intergenic 60.0%
! GGGAGATCCCGGTTCGAACT+TGG - Chr1:16832000-16832019 None:intergenic 60.0%
CACCATGGAGGCCTTGGCCA+AGG - Chr1:16834976-16834995 None:intergenic 65.0%
CAGTAGTCGCAGCACCGCAG+AGG + Chr1:16835882-16835901 MsG0180001173.01.T01:CDS 65.0%
CTTGGCCAAGGCCTCCATGG+TGG + Chr1:16834974-16834993 MsG0180001173.01.T01:CDS 65.0%
TGCCTTGGCCAAGGCCTCCA+TGG + Chr1:16834971-16834990 MsG0180001173.01.T01:CDS 65.0%
! GCGACGCCGGCACCATTTTC+TGG + Chr1:16831235-16831254 MsG0180001173.01.T01:CDS 65.0%
TTACGGCGACGGAGGAGCGG+TGG + Chr1:16831213-16831232 MsG0180001173.01.T01:CDS 70.0%
! CGGAGGAGCGGTGGCGACGC+CGG + Chr1:16831222-16831241 MsG0180001173.01.T01:CDS 80.0%
Chromosome Type Strat End Strand Name
Chr1 gene 16830999 16836656 16830999 ID=MsG0180001173.01;Name=MsG0180001173.01
Chr1 mRNA 16831051 16836656 16831051 ID=MsG0180001173.01.T01;Parent=MsG0180001173.01;Name=MsG0180001173.01.T01;_AED=0.48;_eAED=0.49;_QI=122|0.88|0.8|1|0.77|0.7|10|0|599
Chr1 exon 16831051 16831167 16831051 ID=MsG0180001173.01.T01:exon:31502;Parent=MsG0180001173.01.T01
Chr1 exon 16831197 16831400 16831197 ID=MsG0180001173.01.T01:exon:31503;Parent=MsG0180001173.01.T01
Chr1 five_prime_UTR 16831051 16831167 16831051 ID=MsG0180001173.01.T01:five_prime_utr;Parent=MsG0180001173.01.T01
Chr1 five_prime_UTR 16831197 16831201 16831197 ID=MsG0180001173.01.T01:five_prime_utr;Parent=MsG0180001173.01.T01
Chr1 CDS 16831202 16831400 16831202 ID=MsG0180001173.01.T01:cds;Parent=MsG0180001173.01.T01
Chr1 CDS 16831502 16831653 16831502 ID=MsG0180001173.01.T01:cds;Parent=MsG0180001173.01.T01
Chr1 CDS 16834586 16834756 16834586 ID=MsG0180001173.01.T01:cds;Parent=MsG0180001173.01.T01
Chr1 CDS 16834879 16835049 16834879 ID=MsG0180001173.01.T01:cds;Parent=MsG0180001173.01.T01
Chr1 CDS 16835152 16835307 16835152 ID=MsG0180001173.01.T01:cds;Parent=MsG0180001173.01.T01
Chr1 CDS 16835399 16835545 16835399 ID=MsG0180001173.01.T01:cds;Parent=MsG0180001173.01.T01
Chr1 CDS 16835667 16835738 16835667 ID=MsG0180001173.01.T01:cds;Parent=MsG0180001173.01.T01
Chr1 CDS 16835823 16836356 16835823 ID=MsG0180001173.01.T01:cds;Parent=MsG0180001173.01.T01
Chr1 CDS 16836459 16836656 16836459 ID=MsG0180001173.01.T01:cds;Parent=MsG0180001173.01.T01
Chr1 mRNA 16830999 16836656 16830999 ID=MsG0180001173.01.T02;Parent=MsG0180001173.01;Name=MsG0180001173.01.T02;_AED=0.48;_eAED=0.49;_QI=203|0.87|0.77|1|0.87|0.88|9|0|599
Chr1 exon 16830999 16831400 16830999 ID=MsG0180001173.01.T02:exon:31512;Parent=MsG0180001173.01.T02
Chr1 five_prime_UTR 16830999 16831201 16830999 ID=MsG0180001173.01.T02:five_prime_utr;Parent=MsG0180001173.01.T02
Chr1 CDS 16831202 16831400 16831202 ID=MsG0180001173.01.T02:cds;Parent=MsG0180001173.01.T02
Chr1 CDS 16831502 16831653 16831502 ID=MsG0180001173.01.T02:cds;Parent=MsG0180001173.01.T02
Chr1 CDS 16834586 16834756 16834586 ID=MsG0180001173.01.T02:cds;Parent=MsG0180001173.01.T02
Chr1 CDS 16834879 16835049 16834879 ID=MsG0180001173.01.T02:cds;Parent=MsG0180001173.01.T02
Chr1 CDS 16835152 16835307 16835152 ID=MsG0180001173.01.T02:cds;Parent=MsG0180001173.01.T02
Chr1 CDS 16835399 16835545 16835399 ID=MsG0180001173.01.T02:cds;Parent=MsG0180001173.01.T02
Chr1 CDS 16835667 16835738 16835667 ID=MsG0180001173.01.T02:cds;Parent=MsG0180001173.01.T02
Chr1 CDS 16835823 16836356 16835823 ID=MsG0180001173.01.T02:cds;Parent=MsG0180001173.01.T02
Chr1 CDS 16836459 16836656 16836459 ID=MsG0180001173.01.T02:cds;Parent=MsG0180001173.01.T02
Gene Sequence

>MsG0180001173.01.T01

ATGGAGGAGATTTACGGCGACGGAGGAGCGGTGGCGACGCCGGCACCATTTTCTGGATCGTTTAGAGAAGGTAGAACTTCGTCGAGAAGACGCGGTTCTGCTAGACAGCAGAGTATGGATGCTGATGAGTTCATGAATTTGTTGCACGGTTCGGATCCAGTGAAAGTGGAGCTTAATCGGCTTGAGAATGAAGTTCGAGATAAGGATAGAGAATTATCGGAAGCACAAGCTGAGATTAAAGCGTTGAGGCATTCTGAACGGTTGAGAGAAAAAGCTGTTGAAGAGGTTACTTTTGATTTCTCAATTGTTGTTATTTTTGGTGTTGTTGATGTTTTTTATTGTTTGATTCAAAATCTTGAAATAAAAAAAATCAATGATGAAAAGAAAGCATCAATGGCAGCTCAGTTTGCAGCAGAAGCTACTCTTCGGAGGGTCCATGCTGCTCAGAAGGATGATGACATGCCTCCGATCGAAGCAATTCTTGCTCCTTTGGAGGCTGAACTAAAGCTTGCTCGGCAAGAGATTGCTAAACTACAAGATGACAACAGAGCTTTAGATCGTCTTACCAAATCCAAAGAAGCTGCACTACTTGAAGCTGAAAAGACTGTTCAGTTTGCCTTGGCCAAGGCCTCCATGGTGGATGATCTCCAAAACAAAAATCAAGAGCTGATGAAACAGATTGAGATTTGCCAGGAAGAAAACAAAATCTTGGACAGAATGCATAGACAAAAGGTGGCAGAGGTTGAAAAGCTCACCCAAACTGTGAGGGAGCTAGAAGAGTCAGTCCTTGCAGGTGGTGCAGCAGCAAATGCAGTTAGAGATTATCAACGGAAAGTTCAAGAAATGAATGAAGAACGAAAAACACTTAATAGAGAGTTGGGCCGTGCCAAGGTAACAGCAAACAGGGTAGCTGTTGTGGTTGCAAATGAATGGAAAGATTCTAATGATAAAGTCATGCCTGTCAAACAATGGCTTGAAGAACGACGATTCTTGCAGGGGGAAATGCAGCAACTTCGTGATAAGCTTGCTATAGTTGAGCGCACTGCAAAGTCTGAAGCACAATTGAAAGAAAAATATCAATTGCGGCTCAAAGTGCTGGAGGAGAGTTTGAGGGGAAATTCTAGCGGCAGTAGTCGCAGCACCGCAGAGGGAAGAAGTATGAACAATGGTTCTTCTCGTCGCCAATCACTAGGTGGAGTTGATAATATCTCAAAATTAACCTCTAATGGATTCTTGCCTAAGAGAACACCATCCCCTCAACTCAGGTCATCCCTATCATCTAGCTCAATATTGAGGAGTGCTAAAGGAACATCTAAATCTTTTGATGGTGGCTCAAGGACACTGGAAAGAAGTAAAACGGTGCTGAGGGGAGCACCTCAAAGTTACTCATTCAACCAATCTCTCGAAGAAACCAAAGAGAGAGAGGCGGATGATAATTGGAAAGGAAATTCAGGTGATAAGCCAAATGACTTCCCACCGGCAGATACAGAGGATAGTATTCCAAGTGTTTTATATGACCTCTTGCAGAAAGAGGTCGTTGCCTTGAGGAAAGCTGGTCATGAAAAAGATCAAAGCCTAAAAGATAAAGATGATGCCATTGAGATGTTAGCAAGGAAGGTAGATACGTTGACCAAAGCCATGGAAGTTGAGGCAAAGAAGATGAGAAGGGAAGTAGCTTCCATGGAAAAGGAGGTAGCTGCTATGCGTGTCGACAAAGTACAAGAGAACAGAGCAAAGCGGTTCAGCAATATAAAGGGCCCTGTAAACAGTGCTCAGAACCAGCTAATTTCTGGAAGGTAA

>MsG0180001173.01.T02

ATGGAGGAGATTTACGGCGACGGAGGAGCGGTGGCGACGCCGGCACCATTTTCTGGATCGTTTAGAGAAGGTAGAACTTCGTCGAGAAGACGCGGTTCTGCTAGACAGCAGAGTATGGATGCTGATGAGTTCATGAATTTGTTGCACGGTTCGGATCCAGTGAAAGTGGAGCTTAATCGGCTTGAGAATGAAGTTCGAGATAAGGATAGAGAATTATCGGAAGCACAAGCTGAGATTAAAGCGTTGAGGCATTCTGAACGGTTGAGAGAAAAAGCTGTTGAAGAGGTTACTTTTGATTTCTCAATTGTTGTTATTTTTGGTGTTGTTGATGTTTTTTATTGTTTGATTCAAAATCTTGAAATAAAAAAAATCAATGATGAAAAGAAAGCATCAATGGCAGCTCAGTTTGCAGCAGAAGCTACTCTTCGGAGGGTCCATGCTGCTCAGAAGGATGATGACATGCCTCCGATCGAAGCAATTCTTGCTCCTTTGGAGGCTGAACTAAAGCTTGCTCGGCAAGAGATTGCTAAACTACAAGATGACAACAGAGCTTTAGATCGTCTTACCAAATCCAAAGAAGCTGCACTACTTGAAGCTGAAAAGACTGTTCAGTTTGCCTTGGCCAAGGCCTCCATGGTGGATGATCTCCAAAACAAAAATCAAGAGCTGATGAAACAGATTGAGATTTGCCAGGAAGAAAACAAAATCTTGGACAGAATGCATAGACAAAAGGTGGCAGAGGTTGAAAAGCTCACCCAAACTGTGAGGGAGCTAGAAGAGTCAGTCCTTGCAGGTGGTGCAGCAGCAAATGCAGTTAGAGATTATCAACGGAAAGTTCAAGAAATGAATGAAGAACGAAAAACACTTAATAGAGAGTTGGGCCGTGCCAAGGTAACAGCAAACAGGGTAGCTGTTGTGGTTGCAAATGAATGGAAAGATTCTAATGATAAAGTCATGCCTGTCAAACAATGGCTTGAAGAACGACGATTCTTGCAGGGGGAAATGCAGCAACTTCGTGATAAGCTTGCTATAGTTGAGCGCACTGCAAAGTCTGAAGCACAATTGAAAGAAAAATATCAATTGCGGCTCAAAGTGCTGGAGGAGAGTTTGAGGGGAAATTCTAGCGGCAGTAGTCGCAGCACCGCAGAGGGAAGAAGTATGAACAATGGTTCTTCTCGTCGCCAATCACTAGGTGGAGTTGATAATATCTCAAAATTAACCTCTAATGGATTCTTGCCTAAGAGAACACCATCCCCTCAACTCAGGTCATCCCTATCATCTAGCTCAATATTGAGGAGTGCTAAAGGAACATCTAAATCTTTTGATGGTGGCTCAAGGACACTGGAAAGAAGTAAAACGGTGCTGAGGGGAGCACCTCAAAGTTACTCATTCAACCAATCTCTCGAAGAAACCAAAGAGAGAGAGGCGGATGATAATTGGAAAGGAAATTCAGGTGATAAGCCAAATGACTTCCCACCGGCAGATACAGAGGATAGTATTCCAAGTGTTTTATATGACCTCTTGCAGAAAGAGGTCGTTGCCTTGAGGAAAGCTGGTCATGAAAAAGATCAAAGCCTAAAAGATAAAGATGATGCCATTGAGATGTTAGCAAGGAAGGTAGATACGTTGACCAAAGCCATGGAAGTTGAGGCAAAGAAGATGAGAAGGGAAGTAGCTTCCATGGAAAAGGAGGTAGCTGCTATGCGTGTCGACAAAGTACAAGAGAACAGAGCAAAGCGGTTCAGCAATATAAAGGGCCCTGTAAACAGTGCTCAGAACCAGCTAATTTCTGGAAGGTAA

Protein sequence

>MsG0180001173.01.T01

MEEIYGDGGAVATPAPFSGSFREGRTSSRRRGSARQQSMDADEFMNLLHGSDPVKVELNRLENEVRDKDRELSEAQAEIKALRHSERLREKAVEEVTFDFSIVVIFGVVDVFYCLIQNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNRALDRLTKSKEAALLEAEKTVQFALAKASMVDDLQNKNQELMKQIEICQEENKILDRMHRQKVAEVEKLTQTVRELEESVLAGGAAANAVRDYQRKVQEMNEERKTLNRELGRAKVTANRVAVVVANEWKDSNDKVMPVKQWLEERRFLQGEMQQLRDKLAIVERTAKSEAQLKEKYQLRLKVLEESLRGNSSGSSRSTAEGRSMNNGSSRRQSLGGVDNISKLTSNGFLPKRTPSPQLRSSLSSSSILRSAKGTSKSFDGGSRTLERSKTVLRGAPQSYSFNQSLEETKEREADDNWKGNSGDKPNDFPPADTEDSIPSVLYDLLQKEVVALRKAGHEKDQSLKDKDDAIEMLARKVDTLTKAMEVEAKKMRREVASMEKEVAAMRVDKVQENRAKRFSNIKGPVNSAQNQLISGR*

>MsG0180001173.01.T02

MEEIYGDGGAVATPAPFSGSFREGRTSSRRRGSARQQSMDADEFMNLLHGSDPVKVELNRLENEVRDKDRELSEAQAEIKALRHSERLREKAVEEVTFDFSIVVIFGVVDVFYCLIQNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNRALDRLTKSKEAALLEAEKTVQFALAKASMVDDLQNKNQELMKQIEICQEENKILDRMHRQKVAEVEKLTQTVRELEESVLAGGAAANAVRDYQRKVQEMNEERKTLNRELGRAKVTANRVAVVVANEWKDSNDKVMPVKQWLEERRFLQGEMQQLRDKLAIVERTAKSEAQLKEKYQLRLKVLEESLRGNSSGSSRSTAEGRSMNNGSSRRQSLGGVDNISKLTSNGFLPKRTPSPQLRSSLSSSSILRSAKGTSKSFDGGSRTLERSKTVLRGAPQSYSFNQSLEETKEREADDNWKGNSGDKPNDFPPADTEDSIPSVLYDLLQKEVVALRKAGHEKDQSLKDKDDAIEMLARKVDTLTKAMEVEAKKMRREVASMEKEVAAMRVDKVQENRAKRFSNIKGPVNSAQNQLISGR*