AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008982.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008982.01.T01 MTR_2g450310 92.067 479 38 0 1 479 1 479 0.0 897
MsG0280008982.01.T01 MTR_2g450510 78.077 520 109 2 1 517 1 518 0.0 843
MsG0280008982.01.T01 MTR_4g124800 41.224 490 279 8 27 511 36 521 3.01e-124 374
MsG0280008982.01.T01 MTR_2g044140 39.766 513 298 8 4 511 13 519 5.95e-123 370
MsG0280008982.01.T01 MTR_2g043850 40.546 513 294 8 4 511 13 519 2.88e-122 369
MsG0280008982.01.T01 MTR_2g020630 37.597 516 297 8 1 511 10 505 1.16e-119 361
MsG0280008982.01.T01 MTR_1308s0010 76.301 173 41 0 227 399 1 173 3.51e-91 276
MsG0280008982.01.T01 MTR_1088s0010 82.313 147 26 0 1 147 1 147 8.11e-86 261
MsG0280008982.01.T01 MTR_6g037690 49.045 157 65 2 369 511 157 312 1.98e-43 157
MsG0280008982.01.T01 MTR_1372s0010 82.278 79 14 0 147 225 1 79 2.15e-42 146
MsG0280008982.01.T01 MTR_1g046230 28.346 381 200 21 6 376 25 342 5.59e-18 86.7
MsG0280008982.01.T01 MTR_1g069275 25.401 374 215 17 7 376 27 340 3.15e-16 81.3
MsG0280008982.01.T01 MTR_4g051642 24.084 382 219 16 1 376 3 319 1.69e-15 79.0
MsG0280008982.01.T01 MTR_5g033260 24.804 383 209 15 2 374 3 316 2.56e-14 75.1
MsG0280008982.01.T01 MTR_7g099330 24.734 376 213 18 6 376 25 335 5.41e-14 74.3
MsG0280008982.01.T01 MTR_8g037880 26.087 253 130 8 4 232 3 222 6.14e-14 74.3
MsG0280008982.01.T01 MTR_8g037910 26.172 256 131 8 4 235 3 224 1.69e-13 71.2
MsG0280008982.01.T01 MTR_8g037910 26.953 256 129 9 4 235 3 224 2.43e-13 71.6
MsG0280008982.01.T01 MTR_8g037910 26.953 256 129 9 4 235 3 224 2.57e-13 72.4
MsG0280008982.01.T01 MTR_3g088925 23.077 403 238 16 1 396 3 340 4.17e-13 71.6
MsG0280008982.01.T01 MTR_7g107690 24.147 381 219 17 1 374 1 318 4.65e-13 71.2
MsG0280008982.01.T01 MTR_1g011630 26.190 378 204 18 7 376 18 328 8.04e-13 70.5
MsG0280008982.01.T01 MTR_3g088945 22.829 403 239 16 1 396 3 340 2.84e-12 68.9
MsG0280008982.01.T01 MTR_3g109520 24.808 391 197 16 7 376 41 355 1.14e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008982.01.T01 AT1G19250 42.085 518 279 10 4 511 12 518 1.15e-138 411
MsG0280008982.01.T01 AT5G45180 38.400 500 245 13 4 492 12 459 2.08e-110 336
MsG0280008982.01.T01 AT4G28720 26.455 378 211 19 6 376 26 343 3.91e-16 81.3
MsG0280008982.01.T01 AT1G48910 25.397 378 215 16 1 374 1 315 1.07e-15 79.3
MsG0280008982.01.T01 AT5G11320 25.798 376 206 17 7 376 19 327 2.24e-14 75.5
MsG0280008982.01.T01 AT5G11320 24.804 383 201 16 7 376 19 327 2.98e-14 74.7
MsG0280008982.01.T01 AT5G43890 25.798 376 214 19 7 376 27 343 6.55e-14 74.3
MsG0280008982.01.T01 AT1G62560 25.984 254 129 9 3 229 11 232 7.86e-14 73.9
MsG0280008982.01.T01 AT1G62560 25.984 254 129 9 3 229 11 232 7.94e-14 73.9
MsG0280008982.01.T01 AT1G04610 25.538 372 221 16 7 376 39 356 8.82e-13 70.9
MsG0280008982.01.T01 AT1G21430 26.247 381 210 17 1 374 1 317 1.20e-12 70.1
MsG0280008982.01.T01 AT1G65860 22.441 254 137 7 3 229 11 231 4.75e-12 68.6
MsG0280008982.01.T01 AT4G13260 23.117 385 211 16 7 376 30 344 8.05e-12 67.8
MsG0280008982.01.T01 AT4G13260 23.569 297 173 12 7 288 30 287 1.69e-11 65.9
MsG0280008982.01.T01 AT4G32540 25.911 247 137 12 7 250 23 226 4.03e-11 65.5
MsG0280008982.01.T01 AT4G32540 25.911 247 137 12 7 250 23 226 4.49e-11 65.5
MsG0280008982.01.T01 AT1G62620 24.303 251 136 7 5 229 13 235 5.68e-11 64.7
MsG0280008982.01.T01 AT1G62620 24.303 251 136 7 5 229 13 235 6.05e-11 65.1
MsG0280008982.01.T01 AT1G63370 23.904 251 137 7 5 229 13 235 7.22e-11 64.7
MsG0280008982.01.T01 AT1G63370 23.904 251 137 7 5 229 13 235 7.93e-11 63.9

Find 110 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCAAGATTTCAACATTT+TGG 0.077736 2:-42796531 MsG0280008982.01.T01:CDS
ATGTTATAACATATTGTTTA+TGG 0.095585 2:-42794529 MsG0280008982.01.T01:three_prime_UTR
TTGAACTGTCAATGTAATTT+TGG 0.125056 2:+42795939 None:intergenic
AATAACTACATCTGTTTCTA+AGG 0.224263 2:+42796021 None:intergenic
CCCATGGAAAATCTGAAAAT+TGG 0.228440 2:+42800912 None:intergenic
CCCGGAGAACACTTCCTTCT+TGG 0.233331 2:-42796452 MsG0280008982.01.T01:CDS
ACACTTCCTTCTTGGCCTTT+TGG 0.237410 2:-42796444 MsG0280008982.01.T01:CDS
TGGAAAAGGATGTTAAATTA+TGG 0.238102 2:-42795008 MsG0280008982.01.T01:CDS
AGGTAAGGTTATGCATTCTA+TGG 0.272924 2:-42796856 MsG0280008982.01.T01:CDS
GAAATATCTGCATGTCAAAT+TGG 0.294249 2:-42796157 MsG0280008982.01.T01:CDS
TACCTTTGTTGAGAAATTCT+TGG 0.304695 2:+42800664 None:intergenic
AGTGGTAATGGCAGTAGTTT+TGG 0.313462 2:-42800722 MsG0280008982.01.T01:CDS
ATATGAAGTCATGGGAATTA+TGG 0.316758 2:-42800745 MsG0280008982.01.T01:CDS
GCTGAGCTATTTGAACCATA+TGG 0.318612 2:-42794856 MsG0280008982.01.T01:CDS
ACCATTTGCATTTGCGCATT+CGG 0.341818 2:+42796737 None:intergenic
AAAATTACATTGACAGTTCA+AGG 0.349499 2:-42795937 MsG0280008982.01.T01:CDS
TGCCCAAAATGTTGAAATCT+TGG 0.351554 2:+42796528 None:intergenic
CAATATATAGCTTTATCCTT+TGG 0.355651 2:-42794657 MsG0280008982.01.T01:three_prime_UTR
TCTTGAAGAAAACTATGATT+AGG 0.356221 2:+42796178 None:intergenic
CTTTGCATTGGGAAATATAG+TGG 0.362241 2:-42796930 MsG0280008982.01.T01:CDS
ATAACCAGCAATTTACAAAA+TGG 0.362970 2:-42801101 MsG0280008982.01.T01:exon
ATTCTTGCCACAGGATATAA+AGG 0.366577 2:-42796001 MsG0280008982.01.T01:CDS
AACAAGACCATTATAATCAT+TGG 0.370353 2:+42794831 None:intergenic
AATAAGAGAGTTACAGTAGT+AGG 0.371604 2:-42796789 MsG0280008982.01.T01:CDS
TGCAAATATGCTCTACAGAT+TGG 0.376558 2:-42801031 MsG0280008982.01.T01:CDS
TAGCACACCTCTAAACAAAA+AGG 0.384966 2:+42794781 None:intergenic
TCTACAACTTGCTTATTACT+TGG 0.392477 2:+42800866 None:intergenic
GGGAGGAACTCAGGAATGTT+TGG 0.394469 2:+42796903 None:intergenic
GGAAAAGGATGTTAAATTAT+GGG 0.406921 2:-42795007 MsG0280008982.01.T01:CDS
GCCAAGAAGGAAGTGTTCTC+CGG 0.407386 2:+42796451 None:intergenic
TTGGAATTGAATCTTATGTA+AGG 0.408337 2:+42800806 None:intergenic
TTATAATCATTGGGCCCATA+TGG 0.409896 2:+42794841 None:intergenic
CAATATGTTATAACATAAAC+AGG 0.412524 2:+42794536 None:intergenic
CTGAGCTATTTGAACCATAT+GGG 0.415677 2:-42794855 MsG0280008982.01.T01:CDS
AAGTTGCCACTGAAGAAGTA+TGG 0.417922 2:-42796208 MsG0280008982.01.T01:CDS
TTGTTGAAACATATCTGAAA+TGG 0.425780 2:-42796231 MsG0280008982.01.T01:CDS
ATAATCTATATCAATGACTT+TGG 0.427553 2:+42800787 None:intergenic
AGCTTTAGCTTCTGCAAAGA+AGG 0.430511 2:-42796070 MsG0280008982.01.T01:CDS
GCATTGTTACTTGTGGCATA+TGG 0.438868 2:-42794939 MsG0280008982.01.T01:CDS
GAATCTTATGTAAGGAATGA+TGG 0.442345 2:+42800814 None:intergenic
ATGATGGTGTTGGAGGACTA+TGG 0.447006 2:-42800982 MsG0280008982.01.T01:CDS
AGTTTGTTATTCTTTGCATT+GGG 0.451815 2:-42796941 MsG0280008982.01.T01:CDS
GTTCAAGGATTTCTCTCTAC+AGG 0.451911 2:-42795922 MsG0280008982.01.T01:intron
TATGGGCCCAATGATTATAA+TGG 0.453124 2:-42794838 MsG0280008982.01.T01:CDS
ATCCTATCATTGCCAATTGT+GGG 0.453863 2:+42795130 None:intergenic
GGCCACTTTACTTTCACCAT+TGG 0.455226 2:-42796423 MsG0280008982.01.T01:intron
TGTAATATGCCATGTTCCCT+TGG 0.457974 2:+42800697 None:intergenic
ACATCCTCGCATCCCACAAT+TGG 0.460278 2:-42795142 MsG0280008982.01.T01:CDS
GAGTTTGTTATTCTTTGCAT+TGG 0.462117 2:-42796942 MsG0280008982.01.T01:CDS
TTCTATGGATTACTCTGCCT+TGG 0.462649 2:-42796841 MsG0280008982.01.T01:CDS
TTGTGATTTCTTTATCTCGA+TGG 0.463038 2:+42796093 None:intergenic
AACATTCCTGAGTTCCTCCC+TGG 0.466304 2:-42796900 MsG0280008982.01.T01:CDS
CCTGAGTTCCTCCCTGGAAA+AGG 0.469202 2:-42796894 MsG0280008982.01.T01:CDS
GACGAGTCAATAAACTAAGA+AGG 0.469643 2:+42794568 None:intergenic
TTTATGGTAATGTTTAATGA+TGG 0.480787 2:-42794513 MsG0280008982.01.T01:three_prime_UTR
TTGGTCACCTTTATATCCTG+TGG 0.488352 2:+42795994 None:intergenic
ACAAGACCATTATAATCATT+GGG 0.490199 2:+42794832 None:intergenic
AGAGTTGCAATTGTTGGTGC+AGG 0.491948 2:-42801073 MsG0280008982.01.T01:CDS
TATCCTATCATTGCCAATTG+TGG 0.493186 2:+42795129 None:intergenic
TCATCAGCTTCATATACAAC+AGG 0.497177 2:+42801001 None:intergenic
GTCATTGATATAGATTATGT+TGG 0.502491 2:-42800782 MsG0280008982.01.T01:CDS
ATCCCACAATTGGCAATGAT+AGG 0.504586 2:-42795132 MsG0280008982.01.T01:CDS
AGAGTTACAGTAGTAGGCTC+AGG 0.504894 2:-42796783 MsG0280008982.01.T01:CDS
CTAGAAAATGTGCTAACCAT+TGG 0.509768 2:+42795064 None:intergenic
AAAAGACCCTTCTTTCTCCT+CGG 0.510420 2:+42794880 None:intergenic
CACTTCAGCGGAATACATGT+TGG 0.514505 2:-42794745 MsG0280008982.01.T01:three_prime_UTR
TGGGAATTATGGAGTGGTAA+TGG 0.517223 2:-42800734 MsG0280008982.01.T01:CDS
GTGAAAGTAAAGTGGCCAAA+AGG 0.517743 2:+42796429 None:intergenic
GCCGAATGCGCAAATGCAAA+TGG 0.517814 2:-42796738 MsG0280008982.01.T01:intron
ATGTAATCCGAGGAGAAAGA+AGG 0.524125 2:-42794887 MsG0280008982.01.T01:CDS
AAGTGGCCAAAAGGCCAAGA+AGG 0.525815 2:+42796438 None:intergenic
GATGTAGTTATTCTTGCCAC+AGG 0.531258 2:-42796010 MsG0280008982.01.T01:CDS
CTGATGAAGATATGAAGTCA+TGG 0.535713 2:-42800754 MsG0280008982.01.T01:CDS
GTTCTATTTATAATCGTGCA+AGG 0.542558 2:+42796566 None:intergenic
TATGAAGCTGATGATGGTGT+TGG 0.543117 2:-42800992 MsG0280008982.01.T01:CDS
TGATGTACTCAGATAGATGC+AGG 0.544025 2:+42801133 None:intergenic
CCAAGAAGGAAGTGTTCTCC+GGG 0.546254 2:+42796452 None:intergenic
ATAACTACATCTGTTTCTAA+GGG 0.546830 2:+42796022 None:intergenic
AGCAGCAGTTTCTTTGTCCA+AGG 0.547408 2:+42796824 None:intergenic
TAGTATAAAAGAGATGGAAA+AGG 0.548970 2:-42795022 MsG0280008982.01.T01:CDS
ATTGCCTAGTATAAAAGAGA+TGG 0.549328 2:-42795028 MsG0280008982.01.T01:CDS
TGGAAAATCTGAAAATTGGT+AGG 0.552489 2:+42800916 None:intergenic
ATACATGTTGGAGGGGTGCA+TGG 0.562978 2:-42794733 MsG0280008982.01.T01:three_prime_UTR
GTTGTATATGAAGCTGATGA+TGG 0.564559 2:-42800998 MsG0280008982.01.T01:CDS
GAAGCTGATGATGGTGTTGG+AGG 0.565452 2:-42800989 MsG0280008982.01.T01:CDS
TACCAATGGTGAAAGTAAAG+TGG 0.578127 2:+42796421 None:intergenic
TACCAAGAATTTCTCAACAA+AGG 0.578314 2:-42800666 MsG0280008982.01.T01:intron
ACGAGTCAATAAACTAAGAA+GGG 0.580449 2:+42794569 None:intergenic
TGATGAAGATATGAAGTCAT+GGG 0.593792 2:-42800753 MsG0280008982.01.T01:CDS
TTCAGCGGAATACATGTTGG+AGG 0.599189 2:-42794742 MsG0280008982.01.T01:three_prime_UTR
GGCAATGATAGGATATGCTG+AGG 0.603017 2:-42795121 MsG0280008982.01.T01:CDS
TGTAATCCGAGGAGAAAGAA+GGG 0.603199 2:-42794886 MsG0280008982.01.T01:CDS
AGATCATGCATTGTTACTTG+TGG 0.603581 2:-42794946 MsG0280008982.01.T01:CDS
TCAGCGGAATACATGTTGGA+GGG 0.605726 2:-42794741 MsG0280008982.01.T01:three_prime_UTR
TTCTATTTATAATCGTGCAA+GGG 0.618260 2:+42796567 None:intergenic
AATAATGACAAATAAACCAA+AGG 0.621111 2:+42794641 None:intergenic
GAGCATATTTGCAAGCAAGT+AGG 0.621227 2:+42801041 None:intergenic
ATTGTTGGTGCAGGAATCAG+TGG 0.624826 2:-42801064 MsG0280008982.01.T01:CDS
TCTCACAATTCTCACTTCAG+CGG 0.629098 2:-42794757 MsG0280008982.01.T01:three_prime_UTR
ACTAGTCCATACTTCTTCAG+TGG 0.645916 2:+42796202 None:intergenic
TAGAGAAAGCACAACACTCG+TGG 0.658750 2:-42794703 MsG0280008982.01.T01:three_prime_UTR
CTAATGAAATGAGATGCCAA+TGG 0.660576 2:-42795080 MsG0280008982.01.T01:CDS
GAGACATGAAATGTAATCCG+AGG 0.662039 2:-42794897 MsG0280008982.01.T01:CDS
TTATAAATAGAACTTCACAC+TGG 0.667245 2:-42796556 MsG0280008982.01.T01:CDS
AAGTCATGGGAATTATGGAG+TGG 0.671476 2:-42800740 MsG0280008982.01.T01:CDS
CAGCGGAATACATGTTGGAG+GGG 0.673086 2:-42794740 MsG0280008982.01.T01:three_prime_UTR
ATTGCCAATTGTGGGATGCG+AGG 0.681590 2:+42795138 None:intergenic
GGGAACATGGCATATTACAG+TGG 0.699925 2:-42800693 MsG0280008982.01.T01:CDS
GCAATGATAGGATATGCTGA+GGG 0.702690 2:-42795120 MsG0280008982.01.T01:CDS
ATGGTGTTGGAGGACTATGG+AGG 0.798552 2:-42800979 MsG0280008982.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCTTTCAAATATATATAT+AGG + Chr2:42800094-42800113 None:intergenic 10.0%
!! ATATATATTTGAAAGATTAA+CGG - Chr2:42800096-42800115 MsG0280008982.01.T01:intron 10.0%
!! ATCTTTCAAATATATATATA+GGG + Chr2:42800093-42800112 None:intergenic 10.0%
!! GATGAATTATATATATATAT+GGG - Chr2:42799947-42799966 MsG0280008982.01.T01:intron 10.0%
!! TATATTTGCATATTAAAAAA+TGG + Chr2:42796004-42796023 None:intergenic 10.0%
!! TCTTACAAAAATATATAAAT+TGG + Chr2:42799357-42799376 None:intergenic 10.0%
!! TGATGAATTATATATATATA+TGG - Chr2:42799946-42799965 MsG0280008982.01.T01:intron 10.0%
!!! AAATATATGTTTTGAAAAAA+TGG + Chr2:42797835-42797854 None:intergenic 10.0%
!!! TATTTTAGTTAACATTAATT+GGG - Chr2:42796242-42796261 MsG0280008982.01.T01:CDS 10.0%
!!! TGAATATTGATATTTTTTTA+AGG - Chr2:42798106-42798125 MsG0280008982.01.T01:intron 10.0%
!!! TTATTTTAGTTAACATTAAT+TGG - Chr2:42796241-42796260 MsG0280008982.01.T01:CDS 10.0%
!! AAAAATCAATGTGATTATTT+GGG + Chr2:42796956-42796975 None:intergenic 15.0%
!! AAATTTAACTCATTAATTGT+CGG - Chr2:42796812-42796831 MsG0280008982.01.T01:CDS 15.0%
!! AATTTAGGCTTATTAAAATA+TGG + Chr2:42797744-42797763 None:intergenic 15.0%
!! ATGTTATAACATATTGTTTA+TGG - Chr2:42801147-42801166 MsG0280008982.01.T01:five_prime_UTR 15.0%
!! ATTATAATGTTAGTTATCTT+TGG - Chr2:42797857-42797876 MsG0280008982.01.T01:intron 15.0%
!! TAAAAATCAATGTGATTATT+TGG + Chr2:42796957-42796976 None:intergenic 15.0%
!! TACAAAAGTTAGTATATTAA+TGG + Chr2:42796682-42796701 None:intergenic 15.0%
!! TACACTAATATCTATATATA+TGG - Chr2:42798044-42798063 MsG0280008982.01.T01:intron 15.0%
!! TGAAAAATCAGTATAATAAT+AGG - Chr2:42797415-42797434 MsG0280008982.01.T01:intron 15.0%
!! TGATTAAAATTGTGTATTTA+TGG - Chr2:42795372-42795391 MsG0280008982.01.T01:intron 15.0%
!! TTAGTTGAATTATAAGATTA+AGG - Chr2:42796622-42796641 MsG0280008982.01.T01:intron 15.0%
!!! AATATTCCAGAAAATTTTAT+TGG - Chr2:42800707-42800726 MsG0280008982.01.T01:CDS 15.0%
!!! ACTAAGGATTTTTTTTTTAA+AGG - Chr2:42797934-42797953 MsG0280008982.01.T01:intron 15.0%
!!! TATTTTTGATATGTATTTGT+AGG + Chr2:42799838-42799857 None:intergenic 15.0%
!!! TTCATATTTCATTTTCTTTT+TGG - Chr2:42795065-42795084 MsG0280008982.01.T01:CDS 15.0%
!! AAAAAAAATCCTGATAATTG+TGG - Chr2:42798230-42798249 MsG0280008982.01.T01:intron 20.0%
!! AAACAAAAGAAATCAATCAT+AGG - Chr2:42796029-42796048 MsG0280008982.01.T01:CDS 20.0%
!! AAATAAATAAATCACCTATG+TGG + Chr2:42795476-42795495 None:intergenic 20.0%
!! AAATTATTGTTGTATTGCAA+AGG + Chr2:42798674-42798693 None:intergenic 20.0%
!! AAGCATATCACAATTTATTA+AGG - Chr2:42797599-42797618 MsG0280008982.01.T01:intron 20.0%
!! AATAAATAAATCACCTATGT+GGG + Chr2:42795475-42795494 None:intergenic 20.0%
!! AATAATGACAAATAAACCAA+AGG + Chr2:42801038-42801057 None:intergenic 20.0%
!! AATTATTGTTGTATTGCAAA+GGG + Chr2:42798673-42798692 None:intergenic 20.0%
!! AGAGATAAATAAAGGAAATA+TGG - Chr2:42795161-42795180 MsG0280008982.01.T01:intron 20.0%
!! ATAATCTATATCAATGACTT+TGG + Chr2:42794892-42794911 None:intergenic 20.0%
!! CAATATGTTATAACATAAAC+AGG + Chr2:42801143-42801162 None:intergenic 20.0%
!! CTAAAACATACTTACATAAA+TGG + Chr2:42798338-42798357 None:intergenic 20.0%
!! CTTGATAAACTATTTATGTT+TGG + Chr2:42798370-42798389 None:intergenic 20.0%
!! GAATTATAAGATTAAGGTTA+AGG - Chr2:42796628-42796647 MsG0280008982.01.T01:intron 20.0%
!! GTATAATAATAGGCATAAAT+TGG - Chr2:42797425-42797444 MsG0280008982.01.T01:intron 20.0%
!! TAAAATATTAATAGAGTCAG+AGG - Chr2:42800404-42800423 MsG0280008982.01.T01:intron 20.0%
!! TAAGACAAAATTAACATTAG+AGG + Chr2:42798084-42798103 None:intergenic 20.0%
!! TGAAAATTGAATATATTCTG+CGG + Chr2:42798518-42798537 None:intergenic 20.0%
!! TTTCATAATTACAAATGTGT+TGG - Chr2:42795092-42795111 MsG0280008982.01.T01:CDS 20.0%
!!! AAAATTAACTTGTCTTTTTC+TGG - Chr2:42798011-42798030 MsG0280008982.01.T01:intron 20.0%
!!! AATATAAATTTTCAGAGATG+GGG - Chr2:42799411-42799430 MsG0280008982.01.T01:intron 20.0%
!!! CAATATAAATTTTCAGAGAT+GGG - Chr2:42799410-42799429 MsG0280008982.01.T01:intron 20.0%
!!! CTATTTTCTTATGTATGATT+TGG - Chr2:42799811-42799830 MsG0280008982.01.T01:intron 20.0%
!!! GTGTTGTTATTTAATTTAGT+AGG + Chr2:42797284-42797303 None:intergenic 20.0%
!!! TCAATGTAATTTTGGAAAAT+TGG + Chr2:42799732-42799751 None:intergenic 20.0%
!!! TCAATTGACTTTTGATTATT+AGG + Chr2:42797306-42797325 None:intergenic 20.0%
!!! TGAATATGCTTTTAAGTTTT+TGG + Chr2:42799704-42799723 None:intergenic 20.0%
!!! TGTTACGAGATTTTTTTTTT+AGG + Chr2:42795541-42795560 None:intergenic 20.0%
!!! TTCTTTTACTTTGTCAAAAA+AGG + Chr2:42799559-42799578 None:intergenic 20.0%
!!! TTGTTACGAGATTTTTTTTT+AGG + Chr2:42795332-42795351 None:intergenic 20.0%
!!! TTTATGGTAATGTTTAATGA+TGG - Chr2:42801163-42801182 MsG0280008982.01.T01:five_prime_UTR 20.0%
!!! TTTGAAATATTAATAGAGTC+AGG + Chr2:42800185-42800204 None:intergenic 20.0%
!!! TTTTTTGACAAAGTAAAAGA+AGG - Chr2:42799558-42799577 MsG0280008982.01.T01:intron 20.0%
! AAAATTACATTGACAGTTCA+AGG - Chr2:42799739-42799758 MsG0280008982.01.T01:intron 25.0%
! AAAATTGAATATATTCTGCG+GGG + Chr2:42798516-42798535 None:intergenic 25.0%
! AAATTCTCTATACTAATCCA+TGG - Chr2:42800489-42800508 MsG0280008982.01.T01:intron 25.0%
! AACAAGACCATTATAATCAT+TGG + Chr2:42800848-42800867 None:intergenic 25.0%
! AAGATATTAACATGCAATCA+CGG - Chr2:42798635-42798654 MsG0280008982.01.T01:intron 25.0%
! AAGTTAAAGCAAAGTTTGTA+AGG + Chr2:42798551-42798570 None:intergenic 25.0%
! ACAACTTATATAGATGCTTA+TGG + Chr2:42798437-42798456 None:intergenic 25.0%
! ACAAGACCATTATAATCATT+GGG + Chr2:42800847-42800866 None:intergenic 25.0%
! ACATTAATTGGGAAATATTG+AGG - Chr2:42796253-42796272 MsG0280008982.01.T01:CDS 25.0%
! AGAAAATGACATAGAAATGA+AGG + Chr2:42796843-42796862 None:intergenic 25.0%
! ATAAATAAATCACCTATGTG+GGG + Chr2:42795474-42795493 None:intergenic 25.0%
! ATAACCAGCAATTTACAAAA+TGG - Chr2:42794575-42794594 MsG0280008982.01.T01:intron 25.0%
! ATAAGTTGTTTATCCAAACA+GGG - Chr2:42798448-42798467 MsG0280008982.01.T01:intron 25.0%
! ATAATGTTAGTTATCTTTGG+CGG - Chr2:42797860-42797879 MsG0280008982.01.T01:intron 25.0%
! ATCATAGTCTTTATAGACAA+AGG - Chr2:42797078-42797097 MsG0280008982.01.T01:intron 25.0%
! ATTGTATGCTACTAAAACAA+AGG + Chr2:42797146-42797165 None:intergenic 25.0%
! GAAAATTGAATATATTCTGC+GGG + Chr2:42798517-42798536 None:intergenic 25.0%
! GAAACGTTAGAGATAAATAA+AGG - Chr2:42795153-42795172 MsG0280008982.01.T01:CDS 25.0%
! GGAAAAGGATGTTAAATTAT+GGG - Chr2:42800669-42800688 MsG0280008982.01.T01:CDS 25.0%
! GTCATTGATATAGATTATGT+TGG - Chr2:42794894-42794913 MsG0280008982.01.T01:CDS 25.0%
! TAGTATAAAAGAGATGGAAA+AGG - Chr2:42800654-42800673 MsG0280008982.01.T01:intron 25.0%
! TATAAGTTGTTTATCCAAAC+AGG - Chr2:42798447-42798466 MsG0280008982.01.T01:intron 25.0%
! TCTTGAAGAAAACTATGATT+AGG + Chr2:42799501-42799520 None:intergenic 25.0%
! TGGAAAAGGATGTTAAATTA+TGG - Chr2:42800668-42800687 MsG0280008982.01.T01:CDS 25.0%
! TTATAAATAGAACTTCACAC+TGG - Chr2:42799120-42799139 MsG0280008982.01.T01:intron 25.0%
! TTATGGTATTACAGTCATAA+TGG + Chr2:42796553-42796572 None:intergenic 25.0%
! TTCAATCCATTAATTTCTAC+AGG - Chr2:42799077-42799096 MsG0280008982.01.T01:intron 25.0%
! TTCTATTTATAATCGTGCAA+GGG + Chr2:42799112-42799131 None:intergenic 25.0%
! TTGGAATTGAATCTTATGTA+AGG + Chr2:42794873-42794892 None:intergenic 25.0%
! TTGTTGAAACATATCTGAAA+TGG - Chr2:42799445-42799464 MsG0280008982.01.T01:intron 25.0%
!! AACACCTTTAAAAAGACTTA+TGG + Chr2:42797672-42797691 None:intergenic 25.0%
!! ACACCTTTAAAAAGACTTAT+GGG + Chr2:42797671-42797690 None:intergenic 25.0%
!! ATTCCCATAAGTCTTTTTAA+AGG - Chr2:42797665-42797684 MsG0280008982.01.T01:intron 25.0%
!! GCAATATAAATTTTCAGAGA+TGG - Chr2:42799409-42799428 MsG0280008982.01.T01:intron 25.0%
!! TCTCGAGTAAAACTATATTT+TGG + Chr2:42795225-42795244 None:intergenic 25.0%
!! TGAAATTGTTACGAGATTTT+TGG + Chr2:42795337-42795356 None:intergenic 25.0%
!! TGATCTCCAATAAAATTTTC+TGG + Chr2:42800716-42800735 None:intergenic 25.0%
!! TTGAACTGTCAATGTAATTT+TGG + Chr2:42799740-42799759 None:intergenic 25.0%
!! TTTTCCATCTCTTTTATACT+AGG + Chr2:42800655-42800674 None:intergenic 25.0%
!! TTTTCCATTTTGTAAATTGC+TGG + Chr2:42794582-42794601 None:intergenic 25.0%
!!! AAATGATCCTTTTTGTTTAG+AGG - Chr2:42800888-42800907 MsG0280008982.01.T01:CDS 25.0%
!!! AAGTCTTTTTAAAGGTGTTT+GGG - Chr2:42797673-42797692 MsG0280008982.01.T01:intron 25.0%
!!! AATAACTACATCTGTTTCTA+AGG + Chr2:42799658-42799677 None:intergenic 25.0%
!!! AGTTTGTTATTCTTTGCATT+GGG - Chr2:42798735-42798754 MsG0280008982.01.T01:intron 25.0%
!!! ATAACTACATCTGTTTCTAA+GGG + Chr2:42799657-42799676 None:intergenic 25.0%
!!! CAATATATAGCTTTATCCTT+TGG - Chr2:42801019-42801038 MsG0280008982.01.T01:CDS 25.0%
!!! TAAGTCTTTTTAAAGGTGTT+TGG - Chr2:42797672-42797691 MsG0280008982.01.T01:intron 25.0%
AATAAGAGAGTTACAGTAGT+AGG - Chr2:42798887-42798906 MsG0280008982.01.T01:intron 30.0%
AATTTGAGAGTGACTTACAA+AGG + Chr2:42800158-42800177 None:intergenic 30.0%
ACCTTACCTGTAAAAATTTC+TGG + Chr2:42798809-42798828 None:intergenic 30.0%
ACGAGTCAATAAACTAAGAA+GGG + Chr2:42801110-42801129 None:intergenic 30.0%
ACTTTGTCAAAAAAGGAATC+AGG + Chr2:42799552-42799571 None:intergenic 30.0%
ATAGACAAAGGAAAAAGATC+TGG - Chr2:42797090-42797109 MsG0280008982.01.T01:intron 30.0%
ATATAGATGCTTATGGCATT+AGG + Chr2:42798430-42798449 None:intergenic 30.0%
ATATGAAGTCATGGGAATTA+TGG - Chr2:42794931-42794950 MsG0280008982.01.T01:CDS 30.0%
ATTGCCTAGTATAAAAGAGA+TGG - Chr2:42800648-42800667 MsG0280008982.01.T01:intron 30.0%
CAAAGTTTGTAAGGACATAT+TGG + Chr2:42798542-42798561 None:intergenic 30.0%
CCTTACCTGTAAAAATTTCT+GGG + Chr2:42798808-42798827 None:intergenic 30.0%
CTAAAAGACACCTTCATAAA+AGG - Chr2:42800052-42800071 MsG0280008982.01.T01:intron 30.0%
CTTTGTCAAAAAAGGAATCA+GGG + Chr2:42799551-42799570 None:intergenic 30.0%
GAAAAAAGAGTTGCAATTGT+TGG - Chr2:42794597-42794616 MsG0280008982.01.T01:three_prime_UTR 30.0%
GAAATATCTGCATGTCAAAT+TGG - Chr2:42799519-42799538 MsG0280008982.01.T01:intron 30.0%
GAATCTTATGTAAGGAATGA+TGG + Chr2:42794865-42794884 None:intergenic 30.0%
GACTGAATGTTTACAATAAC+AGG - Chr2:42798700-42798719 MsG0280008982.01.T01:intron 30.0%
GCAAAGTTACAACTAAAAAG+TGG + Chr2:42800033-42800052 None:intergenic 30.0%
GTATCTTACATTCTTACCAA+TGG + Chr2:42799272-42799291 None:intergenic 30.0%
GTGATTCCTGTAGAAATTAA+TGG + Chr2:42799086-42799105 None:intergenic 30.0%
GTTCTATTTATAATCGTGCA+AGG + Chr2:42799113-42799132 None:intergenic 30.0%
TAAAGTAACACACGTAACTA+AGG - Chr2:42797918-42797937 MsG0280008982.01.T01:intron 30.0%
TACCAAGAATTTCTCAACAA+AGG - Chr2:42795010-42795029 MsG0280008982.01.T01:CDS 30.0%
TACCTTTGTTGAGAAATTCT+TGG + Chr2:42795015-42795034 None:intergenic 30.0%
TATAGATGCTTATGGCATTA+GGG + Chr2:42798429-42798448 None:intergenic 30.0%
TATCGGTGCATGATAATTAT+CGG - Chr2:42796280-42796299 MsG0280008982.01.T01:intron 30.0%
TCAAAATAAGCCAATCGAAA+GGG + Chr2:42797627-42797646 None:intergenic 30.0%
TGATGAAGATATGAAGTCAT+GGG - Chr2:42794923-42794942 MsG0280008982.01.T01:CDS 30.0%
TGGAAAATCTGAAAATTGGT+AGG + Chr2:42794763-42794782 None:intergenic 30.0%
TTGTGATTTCTTTATCTCGA+TGG + Chr2:42799586-42799605 None:intergenic 30.0%
! ACAGGTGATAATGAAACAAA+GGG - Chr2:42796470-42796489 MsG0280008982.01.T01:CDS 30.0%
! ACATCAATTGGACATGTTTT+TGG - Chr2:42797248-42797267 MsG0280008982.01.T01:intron 30.0%
! ACCAATTTTCAGATTTTCCA+TGG - Chr2:42794763-42794782 MsG0280008982.01.T01:three_prime_UTR 30.0%
! AGAAACTTTTGACAAAGACA+AGG - Chr2:42800374-42800393 MsG0280008982.01.T01:intron 30.0%
! CCAATTTTCAGATTTTCCAT+GGG - Chr2:42794764-42794783 MsG0280008982.01.T01:three_prime_UTR 30.0%
! CTCCAAGATTTCAACATTTT+GGG - Chr2:42799146-42799165 MsG0280008982.01.T01:intron 30.0%
! TCTAACTTCTCCTTTTCTTT+TGG + Chr2:42797116-42797135 None:intergenic 30.0%
! TCTACAACTTGCTTATTACT+TGG + Chr2:42794813-42794832 None:intergenic 30.0%
! TCTCCAAGATTTCAACATTT+TGG - Chr2:42799145-42799164 MsG0280008982.01.T01:intron 30.0%
! TGAGAAACTTTTGACAAAGA+CGG - Chr2:42800282-42800301 MsG0280008982.01.T01:intron 30.0%
!! AAAATTGGTAGGCTTGTTTT+CGG + Chr2:42794752-42794771 None:intergenic 30.0%
!! CTTACATAAATGGAAGTGTT+TGG + Chr2:42798328-42798347 None:intergenic 30.0%
!! GAGTTTGTTATTCTTTGCAT+TGG - Chr2:42798734-42798753 MsG0280008982.01.T01:intron 30.0%
!! TAGACATGCATTGATTAGTT+GGG - Chr2:42797189-42797208 MsG0280008982.01.T01:intron 30.0%
!! TATGTTTTTGTCACATGACA+AGG - Chr2:42800251-42800270 MsG0280008982.01.T01:intron 30.0%
!! TGTCTTTTTCTGGTAACAAA+CGG - Chr2:42798021-42798040 MsG0280008982.01.T01:intron 30.0%
!! TTAGACATGCATTGATTAGT+TGG - Chr2:42797188-42797207 MsG0280008982.01.T01:intron 30.0%
!! TTAGTTTATTGACTCGTCTA+TGG - Chr2:42801113-42801132 MsG0280008982.01.T01:five_prime_UTR 30.0%
!!! AGTACTGATGTGTTCTTTTT+TGG + Chr2:42796210-42796229 None:intergenic 30.0%
!!! GTCATCCCATTTTTAAGTAT+CGG - Chr2:42796441-42796460 MsG0280008982.01.T01:CDS 30.0%
!!! TCATCCCATTTTTAAGTATC+GGG - Chr2:42796442-42796461 MsG0280008982.01.T01:CDS 30.0%
!!! TTGGATTAGTGCTTCTTTTT+TGG + Chr2:42796191-42796210 None:intergenic 30.0%
AAAATAAGCCAATCGAAAGG+GGG + Chr2:42797625-42797644 None:intergenic 35.0%
AAAGATCTGGCCAAAAGAAA+AGG - Chr2:42797103-42797122 MsG0280008982.01.T01:intron 35.0%
AAGACAGTGCAAATAGCAAT+AGG - Chr2:42797329-42797348 MsG0280008982.01.T01:intron 35.0%
AAGCCCCGATACTTAAAAAT+GGG + Chr2:42796449-42796468 None:intergenic 35.0%
AGAAAAGGAGAAGTTAGAGA+AGG - Chr2:42797118-42797137 MsG0280008982.01.T01:intron 35.0%
AGAATCGAACCACAATTATC+AGG + Chr2:42798242-42798261 None:intergenic 35.0%
AGCAATTGAACTATCTACCT+TGG - Chr2:42797220-42797239 MsG0280008982.01.T01:intron 35.0%
AGGTAAGGTTATGCATTCTA+TGG - Chr2:42798820-42798839 MsG0280008982.01.T01:intron 35.0%
ATATGTGTAAACCACCAAAC+TGG + Chr2:42800461-42800480 None:intergenic 35.0%
ATCCTATCATTGCCAATTGT+GGG + Chr2:42800549-42800568 None:intergenic 35.0%
ATTCTTGCCACAGGATATAA+AGG - Chr2:42799675-42799694 MsG0280008982.01.T01:intron 35.0%
ATTGAACTATCTACCTTGGT+TGG - Chr2:42797224-42797243 MsG0280008982.01.T01:intron 35.0%
ATTGCTAAAAGACACCTTCA+CGG + Chr2:42799989-42800008 None:intergenic 35.0%
CAAAATAAGCCAATCGAAAG+GGG + Chr2:42797626-42797645 None:intergenic 35.0%
CCCATGGAAAATCTGAAAAT+TGG + Chr2:42794767-42794786 None:intergenic 35.0%
CTAATGAAATGAGATGCCAA+TGG - Chr2:42800596-42800615 MsG0280008982.01.T01:intron 35.0%
CTAGAAAATGTGCTAACCAT+TGG + Chr2:42800615-42800634 None:intergenic 35.0%
CTCAAAATAAGCCAATCGAA+AGG + Chr2:42797628-42797647 None:intergenic 35.0%
CTGAGCTATTTGAACCATAT+GGG - Chr2:42800821-42800840 MsG0280008982.01.T01:CDS 35.0%
CTGATGAAGATATGAAGTCA+TGG - Chr2:42794922-42794941 MsG0280008982.01.T01:CDS 35.0%
CTGTGGACGATAAATTAATG+TGG + Chr2:42796722-42796741 None:intergenic 35.0%
CTTTGCATTGGGAAATATAG+TGG - Chr2:42798746-42798765 MsG0280008982.01.T01:intron 35.0%
GACGAGTCAATAAACTAAGA+AGG + Chr2:42801111-42801130 None:intergenic 35.0%
GATGTATTATTTGCCTGTAG+TGG + Chr2:42800519-42800538 None:intergenic 35.0%
GTTGTATATGAAGCTGATGA+TGG - Chr2:42794678-42794697 MsG0280008982.01.T01:three_prime_UTR 35.0%
TAATTGGGAAATATTGAGGC+AGG - Chr2:42796257-42796276 MsG0280008982.01.T01:intron 35.0%
TACCAATGGTGAAAGTAAAG+TGG + Chr2:42799258-42799277 None:intergenic 35.0%
TAGCACACCTCTAAACAAAA+AGG + Chr2:42800898-42800917 None:intergenic 35.0%
TATCCTATCATTGCCAATTG+TGG + Chr2:42800550-42800569 None:intergenic 35.0%
TATGGGCCCAATGATTATAA+TGG - Chr2:42800838-42800857 MsG0280008982.01.T01:CDS 35.0%
TCACAGATTATCACCTATGT+GGG + Chr2:42795686-42795705 None:intergenic 35.0%
TCATCAGCTTCATATACAAC+AGG + Chr2:42794678-42794697 None:intergenic 35.0%
TGCAAATATGCTCTACAGAT+TGG - Chr2:42794645-42794664 MsG0280008982.01.T01:three_prime_UTR 35.0%
TGCCCAAAATGTTGAAATCT+TGG + Chr2:42799151-42799170 None:intergenic 35.0%
TGGTGCAAAAGGAAAAATTG+AGG - Chr2:42797382-42797401 MsG0280008982.01.T01:intron 35.0%
TTATAATCATTGGGCCCATA+TGG + Chr2:42800838-42800857 None:intergenic 35.0%
TTCACAGATTATCACCTATG+TGG + Chr2:42795687-42795706 None:intergenic 35.0%
! AAAGGCCCAGAAATTTTTAC+AGG - Chr2:42798800-42798819 MsG0280008982.01.T01:intron 35.0%
! AGATCATGCATTGTTACTTG+TGG - Chr2:42800730-42800749 MsG0280008982.01.T01:CDS 35.0%
! CACAGGTGATAATGAAACAA+AGG - Chr2:42796469-42796488 MsG0280008982.01.T01:CDS 35.0%
! CAGATATAGTATAGCACTGA+TGG + Chr2:42796147-42796166 None:intergenic 35.0%
! CCACTCATAAAATTCAGGTT+GGG + Chr2:42797501-42797520 None:intergenic 35.0%
! CCCAGAAATTTTTACAGGTA+AGG - Chr2:42798805-42798824 MsG0280008982.01.T01:intron 35.0%
! CTAGAAGACACCTTTTATGA+AGG + Chr2:42800065-42800084 None:intergenic 35.0%
! GGTGGTTTACTCAAGTATTT+TGG + Chr2:42800122-42800141 None:intergenic 35.0%
! GTGATAATGAAACAAAGGGA+TGG - Chr2:42796474-42796493 MsG0280008982.01.T01:CDS 35.0%
! TAAATTTTCAGCTTACCCTC+CGG - Chr2:42797758-42797777 MsG0280008982.01.T01:intron 35.0%
! TCTTTTACAGAAGAATCCCA+TGG + Chr2:42794783-42794802 None:intergenic 35.0%
! TGGTTAGCACATTTTCTAGA+TGG - Chr2:42800616-42800635 MsG0280008982.01.T01:intron 35.0%
!! AGACATGCATTGATTAGTTG+GGG - Chr2:42797190-42797209 MsG0280008982.01.T01:intron 35.0%
!! ATTTTACCGTATCGACGTAT+CGG + Chr2:42795903-42795922 None:intergenic 35.0%
!!! CATCCCATTTTTAAGTATCG+GGG - Chr2:42796443-42796462 MsG0280008982.01.T01:CDS 35.0%
!!! GGCTTATTTTGAGCTTATGT+GGG - Chr2:42797635-42797654 MsG0280008982.01.T01:intron 35.0%
!!! TGGCTTATTTTGAGCTTATG+TGG - Chr2:42797634-42797653 MsG0280008982.01.T01:intron 35.0%
AAAAGACCCTTCTTTCTCCT+CGG + Chr2:42800799-42800818 None:intergenic 40.0%
AAAGTGGAAATCACACCTTG+AGG + Chr2:42800017-42800036 None:intergenic 40.0%
AAGTCATGGGAATTATGGAG+TGG - Chr2:42794936-42794955 MsG0280008982.01.T01:CDS 40.0%
AAGTTGCCACTGAAGAAGTA+TGG - Chr2:42799468-42799487 MsG0280008982.01.T01:intron 40.0%
AATCCATGGTAAACCACTAC+AGG - Chr2:42800503-42800522 MsG0280008982.01.T01:intron 40.0%
ACCATTTGCATTTGCGCATT+CGG + Chr2:42798942-42798961 None:intergenic 40.0%
ACTAGTCCATACTTCTTCAG+TGG + Chr2:42799477-42799496 None:intergenic 40.0%
ATACTCTCCTGATACGTATC+GGG - Chr2:42796303-42796322 MsG0280008982.01.T01:intron 40.0%
ATCCCACAATTGGCAATGAT+AGG - Chr2:42800544-42800563 MsG0280008982.01.T01:intron 40.0%
ATGGATCTAGAGAGAATCGA+AGG + Chr2:42797816-42797835 None:intergenic 40.0%
ATGTAATCCGAGGAGAAAGA+AGG - Chr2:42800789-42800808 MsG0280008982.01.T01:CDS 40.0%
CACAGATTATCACCTATGTG+GGG + Chr2:42795685-42795704 None:intergenic 40.0%
GAAGCCCCGATACTTAAAAA+TGG + Chr2:42796450-42796469 None:intergenic 40.0%
GACAGCCACTCATAAAATTC+AGG + Chr2:42797506-42797525 None:intergenic 40.0%
GAGACATGAAATGTAATCCG+AGG - Chr2:42800779-42800798 MsG0280008982.01.T01:CDS 40.0%
GAGCATATTTGCAAGCAAGT+AGG + Chr2:42794638-42794657 None:intergenic 40.0%
GATACTCTCCTGATACGTAT+CGG - Chr2:42796302-42796321 MsG0280008982.01.T01:intron 40.0%
GATGTAGTTATTCTTGCCAC+AGG - Chr2:42799666-42799685 MsG0280008982.01.T01:intron 40.0%
GCAATGATAGGATATGCTGA+GGG - Chr2:42800556-42800575 MsG0280008982.01.T01:intron 40.0%
GCCACTCATAAAATTCAGGT+TGG + Chr2:42797502-42797521 None:intergenic 40.0%
GCTGAGCTATTTGAACCATA+TGG - Chr2:42800820-42800839 MsG0280008982.01.T01:CDS 40.0%
GGAAATATTGAGGCAGGTAT+CGG - Chr2:42796263-42796282 MsG0280008982.01.T01:intron 40.0%
GGAGGGTAAGCTGAAAATTT+AGG + Chr2:42797759-42797778 None:intergenic 40.0%
GTGAAAGTAAAGTGGCCAAA+AGG + Chr2:42799250-42799269 None:intergenic 40.0%
GTTCAAGGATTTCTCTCTAC+AGG - Chr2:42799754-42799773 MsG0280008982.01.T01:intron 40.0%
TACAAAGGCAGGGATCAAAT+TGG + Chr2:42800143-42800162 None:intergenic 40.0%
TCATAAGCTCCTTGTTAAGC+CGG + Chr2:42797780-42797799 None:intergenic 40.0%
TCTCACAATTCTCACTTCAG+CGG - Chr2:42800919-42800938 MsG0280008982.01.T01:CDS 40.0%
TGATGTACTCAGATAGATGC+AGG + Chr2:42794546-42794565 None:intergenic 40.0%
TGGAAAATTCCAAGATGTGC+AGG - Chr2:42797445-42797464 MsG0280008982.01.T01:intron 40.0%
TGGGAATTATGGAGTGGTAA+TGG - Chr2:42794942-42794961 MsG0280008982.01.T01:CDS 40.0%
TGTAATATGCCATGTTCCCT+TGG + Chr2:42794982-42795001 None:intergenic 40.0%
TGTAATCCGAGGAGAAAGAA+GGG - Chr2:42800790-42800809 MsG0280008982.01.T01:CDS 40.0%
TTACACTCTTAGACCCTGTT+TGG + Chr2:42798464-42798483 None:intergenic 40.0%
TTGCTAAAAGACACCTTCAC+GGG + Chr2:42799988-42800007 None:intergenic 40.0%
TTGGTCACCTTTATATCCTG+TGG + Chr2:42799685-42799704 None:intergenic 40.0%
! AGCTTTAGCTTCTGCAAAGA+AGG - Chr2:42799606-42799625 MsG0280008982.01.T01:intron 40.0%
! CCCAACCTGAATTTTATGAG+TGG - Chr2:42797498-42797517 MsG0280008982.01.T01:intron 40.0%
! GCATTGTTACTTGTGGCATA+TGG - Chr2:42800737-42800756 MsG0280008982.01.T01:CDS 40.0%
! TGATACGTATCGGGAAGTAT+CGG - Chr2:42796312-42796331 MsG0280008982.01.T01:intron 40.0%
! TTCTATGGATTACTCTGCCT+TGG - Chr2:42798835-42798854 MsG0280008982.01.T01:intron 40.0%
! TTTTAGCAATCGACACCTCA+AGG - Chr2:42799999-42800018 MsG0280008982.01.T01:intron 40.0%
!! AAAATTTCTGGGCCTTTTCC+AGG + Chr2:42798797-42798816 None:intergenic 40.0%
!! AAATTTCTGGGCCTTTTCCA+GGG + Chr2:42798796-42798815 None:intergenic 40.0%
!! GACATGCATTGATTAGTTGG+GGG - Chr2:42797191-42797210 MsG0280008982.01.T01:intron 40.0%
!! TATGAAGCTGATGATGGTGT+TGG - Chr2:42794684-42794703 MsG0280008982.01.T01:three_prime_UTR 40.0%
!!! AGATTTTTGGTGCAGTATCG+TGG + Chr2:42795712-42795731 None:intergenic 40.0%
!!! AGTGGTAATGGCAGTAGTTT+TGG - Chr2:42794954-42794973 MsG0280008982.01.T01:CDS 40.0%
!!! GAACTTTTAGTTCACAAGCC+CGG - Chr2:42799206-42799225 MsG0280008982.01.T01:intron 40.0%
!!! GATTTTTGGTGCAGTATCGT+GGG + Chr2:42795711-42795730 None:intergenic 40.0%
AAAGGCAGGGATCAAATTGG+TGG + Chr2:42800140-42800159 None:intergenic 45.0%
AACCAACTTGACACTCGTAC+AGG - Chr2:42797548-42797567 MsG0280008982.01.T01:intron 45.0%
ACACCACCGAAAGGGAAAAT+CGG + Chr2:42795451-42795470 None:intergenic 45.0%
ACCTTGGTTGGCACATCAAT+TGG - Chr2:42797236-42797255 MsG0280008982.01.T01:intron 45.0%
AGAGTTACAGTAGTAGGCTC+AGG - Chr2:42798893-42798912 MsG0280008982.01.T01:intron 45.0%
AGAGTTGCAATTGTTGGTGC+AGG - Chr2:42794603-42794622 MsG0280008982.01.T01:three_prime_UTR 45.0%
AGCAGCAGTTTCTTTGTCCA+AGG + Chr2:42798855-42798874 None:intergenic 45.0%
ATGTCCGTATCATAGTCTGC+TGG - Chr2:42797362-42797381 MsG0280008982.01.T01:intron 45.0%
ATTGTTGGTGCAGGAATCAG+TGG - Chr2:42794612-42794631 MsG0280008982.01.T01:three_prime_UTR 45.0%
CACACCATGTTGAAGATCTG+TGG + Chr2:42796739-42796758 None:intergenic 45.0%
CACAGATCTTCAACATGGTG+TGG - Chr2:42796737-42796756 MsG0280008982.01.T01:intron 45.0%
CACTTCAGCGGAATACATGT+TGG - Chr2:42800931-42800950 MsG0280008982.01.T01:CDS 45.0%
GAGAGTGACTTACAAAGGCA+GGG + Chr2:42800153-42800172 None:intergenic 45.0%
GATACTTCCCGATACGTATC+AGG + Chr2:42796313-42796332 None:intergenic 45.0%
GATCTAGAGAGAATCGAAGG+AGG + Chr2:42797813-42797832 None:intergenic 45.0%
GGCAATGATAGGATATGCTG+AGG - Chr2:42800555-42800574 MsG0280008982.01.T01:intron 45.0%
GGGAACATGGCATATTACAG+TGG - Chr2:42794983-42795002 MsG0280008982.01.T01:CDS 45.0%
TAGAAAGACCGAGACCAGTT+TGG - Chr2:42800444-42800463 MsG0280008982.01.T01:intron 45.0%
TATTAAGGCCCCCTTTCGAT+TGG - Chr2:42797614-42797633 MsG0280008982.01.T01:intron 45.0%
TCAGCGGAATACATGTTGGA+GGG - Chr2:42800935-42800954 MsG0280008982.01.T01:CDS 45.0%
TCATAGTCTGCTGGTGCAAA+AGG - Chr2:42797371-42797390 MsG0280008982.01.T01:intron 45.0%
TCCAATTGATGTGCCAACCA+AGG + Chr2:42797240-42797259 None:intergenic 45.0%
TCGTCCACAGATCTTCAACA+TGG - Chr2:42796732-42796751 MsG0280008982.01.T01:intron 45.0%
TGAGAGTGACTTACAAAGGC+AGG + Chr2:42800154-42800173 None:intergenic 45.0%
TGCACCAGCAGACTATGATA+CGG + Chr2:42797369-42797388 None:intergenic 45.0%
TTCAGCGGAATACATGTTGG+AGG - Chr2:42800934-42800953 MsG0280008982.01.T01:CDS 45.0%
TTGCCTGTAGTGGTTTACCA+TGG + Chr2:42800509-42800528 None:intergenic 45.0%
! AGCAACCGAGTTTTCCCTTT+CGG - Chr2:42795653-42795672 MsG0280008982.01.T01:intron 45.0%
! ATGATGGTGTTGGAGGACTA+TGG - Chr2:42794694-42794713 MsG0280008982.01.T01:three_prime_UTR 45.0%
! GGCCACTTTACTTTCACCAT+TGG - Chr2:42799253-42799272 MsG0280008982.01.T01:intron 45.0%
! GTAAACCACCAAACTGGTCT+CGG + Chr2:42800455-42800474 None:intergenic 45.0%
! TAGAGAAAGCACAACACTCG+TGG - Chr2:42800973-42800992 MsG0280008982.01.T01:CDS 45.0%
!! ACACTTCCTTCTTGGCCTTT+TGG - Chr2:42799232-42799251 MsG0280008982.01.T01:intron 45.0%
!! ATGCATTGATTAGTTGGGGG+TGG - Chr2:42797194-42797213 MsG0280008982.01.T01:intron 45.0%
!! GAGCAACCGATTTTCCCTTT+CGG - Chr2:42795442-42795461 MsG0280008982.01.T01:intron 45.0%
!! GATACGTATCGGGAAGTATC+GGG - Chr2:42796313-42796332 MsG0280008982.01.T01:intron 45.0%
!! GCACTGATGGTGCTCTTTTT+GGG + Chr2:42796134-42796153 None:intergenic 45.0%
!! GGTAGGCTTGTTTTCGGTTT+TGG + Chr2:42794746-42794765 None:intergenic 45.0%
!! GTTTTGGATCCAAGGGAACA+TGG - Chr2:42794970-42794989 MsG0280008982.01.T01:CDS 45.0%
!! TTTAAGTATCGGGGCTTCAC+AGG - Chr2:42796452-42796471 MsG0280008982.01.T01:CDS 45.0%
!!! AGCACTGATGGTGCTCTTTT+TGG + Chr2:42796135-42796154 None:intergenic 45.0%
!!! GGCAGTAGTTTTGGATCCAA+GGG - Chr2:42794963-42794982 MsG0280008982.01.T01:CDS 45.0%
!!! TGGCAGTAGTTTTGGATCCA+AGG - Chr2:42794962-42794981 MsG0280008982.01.T01:CDS 45.0%
!! AAAAAATAAAATTTAATCTT+CGG - Chr2:42796349-42796368 MsG0280008982.01.T01:intron 5.0%
!!! TAAAGTAAAAATTTAATTTA+TGG + Chr2:42796570-42796589 None:intergenic 5.0%
AAAGACCGAGACCAGTTTGG+TGG - Chr2:42800447-42800466 MsG0280008982.01.T01:intron 50.0%
AACATTCCTGAGTTCCTCCC+TGG - Chr2:42798776-42798795 MsG0280008982.01.T01:intron 50.0%
AAGCTCCTTGTTAAGCCGGA+GGG + Chr2:42797776-42797795 None:intergenic 50.0%
AAGTGGCCAAAAGGCCAAGA+AGG + Chr2:42799241-42799260 None:intergenic 50.0%
ACATCCTCGCATCCCACAAT+TGG - Chr2:42800534-42800553 MsG0280008982.01.T01:intron 50.0%
ATTGCCAATTGTGGGATGCG+AGG + Chr2:42800541-42800560 None:intergenic 50.0%
CACCACCGAAAGGGAAAACT+CGG + Chr2:42795661-42795680 None:intergenic 50.0%
CAGCGGAATACATGTTGGAG+GGG - Chr2:42800936-42800955 MsG0280008982.01.T01:CDS 50.0%
CTAAAAGACACCTTCACGGG+TGG + Chr2:42799985-42800004 None:intergenic 50.0%
GACCTGTACGAGTGTCAAGT+TGG + Chr2:42797553-42797572 None:intergenic 50.0%
GCCGAATGCGCAAATGCAAA+TGG - Chr2:42798938-42798957 MsG0280008982.01.T01:intron 50.0%
GGGAGGAACTCAGGAATGTT+TGG + Chr2:42798776-42798795 None:intergenic 50.0%
TAAGCTCCTTGTTAAGCCGG+AGG + Chr2:42797777-42797796 None:intergenic 50.0%
! AACCGAGTTTTCCCTTTCGG+TGG - Chr2:42795656-42795675 MsG0280008982.01.T01:intron 50.0%
! ACGTATCGGTGCAGTATCGT+GGG + Chr2:42795889-42795908 None:intergenic 50.0%
! ACTGCACCGATACGTCGATA+CGG - Chr2:42795894-42795913 MsG0280008982.01.T01:intron 50.0%
! ATACATGTTGGAGGGGTGCA+TGG - Chr2:42800943-42800962 MsG0280008982.01.T01:CDS 50.0%
! ATGGTGTTGGAGGACTATGG+AGG - Chr2:42794697-42794716 MsG0280008982.01.T01:three_prime_UTR 50.0%
!! CAACCGATTTTCCCTTTCGG+TGG - Chr2:42795445-42795464 MsG0280008982.01.T01:intron 50.0%
!! CCAAGAAGGAAGTGTTCTCC+GGG + Chr2:42799227-42799246 None:intergenic 50.0%
!! GAAGCTGATGATGGTGTTGG+AGG - Chr2:42794687-42794706 MsG0280008982.01.T01:three_prime_UTR 50.0%
!! GCCAAGAAGGAAGTGTTCTC+CGG + Chr2:42799228-42799247 None:intergenic 50.0%
!! GGGAAGTATCGGGCATGTAT+CGG - Chr2:42796392-42796411 MsG0280008982.01.T01:intron 50.0%
ATGTGGGGACACCACCGAAA+GGG + Chr2:42795459-42795478 None:intergenic 55.0%
CCCGGAGAACACTTCCTTCT+TGG - Chr2:42799224-42799243 MsG0280008982.01.T01:intron 55.0%
CCTGAGTTCCTCCCTGGAAA+AGG - Chr2:42798782-42798801 MsG0280008982.01.T01:intron 55.0%
GCTTACCCTCCGGCTTAACA+AGG - Chr2:42797768-42797787 MsG0280008982.01.T01:intron 55.0%
TATCGGTGCAGGATACGCAG+GGG - Chr2:42796409-42796428 MsG0280008982.01.T01:intron 55.0%
TATGTGGGGACACCACCGAA+AGG + Chr2:42795460-42795479 None:intergenic 55.0%
TTGCTAGAAGCCACCCGTGA+AGG - Chr2:42799972-42799991 MsG0280008982.01.T01:intron 55.0%
TTTCGGTGGTGTCCCCACAT+AGG - Chr2:42795459-42795478 MsG0280008982.01.T01:intron 55.0%
! CCTTTTCCAGGGAGGAACTC+AGG + Chr2:42798785-42798804 None:intergenic 55.0%
! GACGTATCGGTGCAGTATCG+TGG + Chr2:42795890-42795909 None:intergenic 55.0%
! GTATCGGTGCAGGATACGCA+GGG - Chr2:42796408-42796427 MsG0280008982.01.T01:intron 55.0%
! TATCGGGCATGTATCGGTGC+AGG - Chr2:42796398-42796417 MsG0280008982.01.T01:intron 55.0%
! TGTATCGGTGCAGGATACGC+AGG - Chr2:42796407-42796426 MsG0280008982.01.T01:intron 55.0%
! TTTCTGGGCCTTTTCCAGGG+AGG + Chr2:42798793-42798812 None:intergenic 55.0%
GCGAAGCCAGCTGGGATTGA+GGG + Chr2:42797477-42797496 None:intergenic 60.0%
GGGTGTGCACCTGCACATCT+TGG + Chr2:42797457-42797476 None:intergenic 60.0%
TGCACACCCTCAATCCCAGC+TGG - Chr2:42797468-42797487 MsG0280008982.01.T01:intron 60.0%
CGCGAAGCCAGCTGGGATTG+AGG + Chr2:42797478-42797497 None:intergenic 65.0%
AGGTTGGGCGCGAAGCCAGC+TGG + Chr2:42797486-42797505 None:intergenic 70.0%
GGTTGGGCGCGAAGCCAGCT+GGG + Chr2:42797485-42797504 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 42794512 42801186 42794512 ID=MsG0280008982.01;Name=MsG0280008982.01
Chr2 mRNA 42794512 42801186 42794512 ID=MsG0280008982.01.T01;Parent=MsG0280008982.01;Name=MsG0280008982.01.T01;_AED=0.41;_eAED=0.41;_QI=82|1|1|1|0.8|0.66|6|287|517
Chr2 exon 42794512 42794559 42794512 ID=MsG0280008982.01.T01:exon:27335;Parent=MsG0280008982.01.T01
Chr2 exon 42794583 42795173 42794583 ID=MsG0280008982.01.T01:exon:27334;Parent=MsG0280008982.01.T01
Chr2 exon 42795923 42796272 42795923 ID=MsG0280008982.01.T01:exon:27333;Parent=MsG0280008982.01.T01
Chr2 exon 42796424 42796599 42796424 ID=MsG0280008982.01.T01:exon:27332;Parent=MsG0280008982.01.T01
Chr2 exon 42796739 42796976 42796739 ID=MsG0280008982.01.T01:exon:27331;Parent=MsG0280008982.01.T01
Chr2 exon 42800667 42801186 42800667 ID=MsG0280008982.01.T01:exon:27330;Parent=MsG0280008982.01.T01
Chr2 five_prime_UTR 42801105 42801186 42801105 ID=MsG0280008982.01.T01:five_prime_utr;Parent=MsG0280008982.01.T01
Chr2 CDS 42800667 42801104 42800667 ID=MsG0280008982.01.T01:cds;Parent=MsG0280008982.01.T01
Chr2 CDS 42796739 42796976 42796739 ID=MsG0280008982.01.T01:cds;Parent=MsG0280008982.01.T01
Chr2 CDS 42796424 42796599 42796424 ID=MsG0280008982.01.T01:cds;Parent=MsG0280008982.01.T01
Chr2 CDS 42795923 42796272 42795923 ID=MsG0280008982.01.T01:cds;Parent=MsG0280008982.01.T01
Chr2 CDS 42794822 42795173 42794822 ID=MsG0280008982.01.T01:cds;Parent=MsG0280008982.01.T01
Chr2 three_prime_UTR 42794583 42794821 42794583 ID=MsG0280008982.01.T01:three_prime_utr;Parent=MsG0280008982.01.T01
Chr2 three_prime_UTR 42794512 42794559 42794512 ID=MsG0280008982.01.T01:three_prime_utr;Parent=MsG0280008982.01.T01
Gene Sequence

>MsG0280008982.01.T01

ATGGAAAAAAGAGTTGCAATTGTTGGTGCAGGAATCAGTGGCCTACTTGCTTGCAAATATGCTCTACAGATTGGTTTTAATCCTGTTGTATATGAAGCTGATGATGGTGTTGGAGGACTATGGAGGCATACTATTGAATCTACTAAACTCCAAAACCGAAAACAAGCCTACCAATTTTCAGATTTTCCATGGGATTCTTCTGTAAAAGAAGTTTGTCCAAGTAATAAGCAAGTTGTAGATTATGTTGAATCATATGCTCAACATTTTTCCATCATTCCTTACATAAGATTCAATTCCAAAGTCATTGATATAGATTATGTTGGAGAGTCTGATGAAGATATGAAGTCATGGGAATTATGGAGTGGTAATGGCAGTAGTTTTGGATCCAAGGGAACATGGCATATTACAGTGGAAGATACCAAGAATTTCTCAACAAAGGTACATAAAGCAGAGTTTGTTATTCTTTGCATTGGGAAATATAGTGGTTTTCCAAACATTCCTGAGTTCCTCCCTGGAAAAGGCCCAGAAATTTTTACAGGTAAGGTTATGCATTCTATGGATTACTCTGCCTTGGACAAAGAAACTGCTGCTAAATTGATAAAAAATAAGAGAGTTACAGTAGTAGGCTCAGGAAAATCTGCTCTTGATATAGCTGCCGAATGCGCAAATGCAAATGGAATCACTCACCCTTGCACGATTATAAATAGAACTTCACACTGGTTTCTCCAAGATTTCAACATTTTGGGCATTCGTCTCAGATACTTGTATTTCAATCGTTTCGCAGAACTTTTAGTTCACAAGCCCGGAGAACACTTCCTTCTTGGCCTTTTGGCCACTTTACTTTCACCATTGAGATGGGGAATTTCTAAACTTGTTGAAACATATCTGAAATGGAAGTTGCCACTGAAGAAGTATGGACTAGTACCTAATCATAGTTTTCTTCAAGAAATATCTGCATGTCAAATTGGAATTCTCCCTGATTCCTTTTTTGACAAAGTAAAAGAAGGATCCATCGAGATAAAGAAATCACAAAGCTTTAGCTTCTGCAAAGAAGGTTTGATCATCAATGAAGAAGCTAAGCCCTTAGAAACAGATGTAGTTATTCTTGCCACAGGATATAAAGGTGACCAAAAACTTAAAAGCATATTCAAATCTCCAATTTTCCAAAATTACATTGACAGTTCAAGGATTTCTCTCTACAGGCAAATAATACATCCTCGCATCCCACAATTGGCAATGATAGGATATGCTGAGGGAATATCAAATATTGTTTCTAATGAAATGAGATGCCAATGGTTAGCACATTTTCTAGATGGAAACATTGAATTGCCTAGTATAAAAGAGATGGAAAAGGATGTTAAATTATGGGAAGACAACATGAAGCAATATTCCAGAAAATTTTATTGGAGATCATGCATTGTTACTTGTGGCATATGGTATAATGATCAATTGTGCAGAGACATGAAATGTAATCCGAGGAGAAAGAAGGGTCTTTTTGCTGAGCTATTTGAACCATATGGGCCCAATGATTATAATGGTCTTGTTCGTAAATGA
Protein sequence

>MsG0280008982.01.T01

MEKRVAIVGAGISGLLACKYALQIGFNPVVYEADDGVGGLWRHTIESTKLQNRKQAYQFSDFPWDSSVKEVCPSNKQVVDYVESYAQHFSIIPYIRFNSKVIDIDYVGESDEDMKSWELWSGNGSSFGSKGTWHITVEDTKNFSTKVHKAEFVILCIGKYSGFPNIPEFLPGKGPEIFTGKVMHSMDYSALDKETAAKLIKNKRVTVVGSGKSALDIAAECANANGITHPCTIINRTSHWFLQDFNILGIRLRYLYFNRFAELLVHKPGEHFLLGLLATLLSPLRWGISKLVETYLKWKLPLKKYGLVPNHSFLQEISACQIGILPDSFFDKVKEGSIEIKKSQSFSFCKEGLIINEEAKPLETDVVILATGYKGDQKLKSIFKSPIFQNYIDSSRISLYRQIIHPRIPQLAMIGYAEGISNIVSNEMRCQWLAHFLDGNIELPSIKEMEKDVKLWEDNMKQYSRKFYWRSCIVTCGIWYNDQLCRDMKCNPRRKKGLFAELFEPYGPNDYNGLVRK*