AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008988.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008988.01.T01 MTR_2g450310 92.067 479 38 0 1 479 1 479 0.0 898
MsG0280008988.01.T01 MTR_2g450510 78.077 520 109 2 1 517 1 518 0.0 844
MsG0280008988.01.T01 MTR_4g124800 41.309 489 280 7 27 511 36 521 6.10e-125 375
MsG0280008988.01.T01 MTR_2g044140 39.961 513 297 8 4 511 13 519 3.62e-123 371
MsG0280008988.01.T01 MTR_2g043850 40.741 513 293 8 4 511 13 519 5.89e-123 370
MsG0280008988.01.T01 MTR_2g020630 37.791 516 296 8 1 511 10 505 1.35e-120 364
MsG0280008988.01.T01 MTR_1308s0010 76.301 173 41 0 227 399 1 173 8.97e-91 275
MsG0280008988.01.T01 MTR_1088s0010 82.313 147 26 0 1 147 1 147 1.10e-85 261
MsG0280008988.01.T01 MTR_6g037690 49.682 157 64 3 369 511 157 312 9.17e-44 157
MsG0280008988.01.T01 MTR_1372s0010 83.544 79 13 0 147 225 1 79 1.37e-42 146
MsG0280008988.01.T01 MTR_1g069275 25.134 374 216 17 7 376 27 340 2.30e-15 78.6
MsG0280008988.01.T01 MTR_4g051642 24.084 382 219 16 1 376 3 319 4.40e-15 77.4
MsG0280008988.01.T01 MTR_5g033260 24.804 383 209 15 2 374 3 316 3.55e-14 74.7
MsG0280008988.01.T01 MTR_7g099330 24.934 377 211 19 6 376 25 335 5.66e-14 74.3
MsG0280008988.01.T01 MTR_8g037880 26.087 253 130 8 4 232 3 222 6.77e-14 73.9
MsG0280008988.01.T01 MTR_7g107690 24.147 381 219 17 1 374 1 318 1.11e-13 73.2
MsG0280008988.01.T01 MTR_8g037910 26.172 256 131 8 4 235 3 224 2.37e-13 70.9
MsG0280008988.01.T01 MTR_8g037910 26.953 256 129 9 4 235 3 224 2.97e-13 71.2
MsG0280008988.01.T01 MTR_8g037910 26.953 256 129 9 4 235 3 224 3.38e-13 72.0
MsG0280008988.01.T01 MTR_3g088925 23.325 403 237 16 1 396 3 340 5.92e-13 70.9
MsG0280008988.01.T01 MTR_3g088945 23.077 403 238 16 1 396 3 340 4.10e-12 68.2
MsG0280008988.01.T01 MTR_1g011630 25.926 378 205 18 7 376 18 328 5.05e-12 68.2
MsG0280008988.01.T01 MTR_3g109520 25.064 391 196 16 7 376 41 355 3.13e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008988.01.T01 AT1G19250 42.278 518 278 10 4 511 12 518 2.26e-138 410
MsG0280008988.01.T01 AT5G45180 38.105 496 252 12 4 492 12 459 3.44e-109 333
MsG0280008988.01.T01 AT4G28720 26.455 378 211 19 6 376 26 343 2.99e-16 81.3
MsG0280008988.01.T01 AT1G48910 25.397 378 215 16 1 374 1 315 2.09e-15 78.6
MsG0280008988.01.T01 AT5G11320 25.798 376 206 17 7 376 19 327 3.53e-14 75.1
MsG0280008988.01.T01 AT5G11320 25.266 376 208 17 7 376 19 327 6.28e-14 73.6
MsG0280008988.01.T01 AT1G62560 25.984 254 129 9 3 229 11 232 1.12e-13 73.2
MsG0280008988.01.T01 AT1G62560 25.984 254 129 9 3 229 11 232 1.25e-13 73.6
MsG0280008988.01.T01 AT5G43890 25.266 376 216 19 7 376 27 343 4.27e-13 71.6
MsG0280008988.01.T01 AT1G04610 25.538 372 221 16 7 376 39 356 1.15e-12 70.5
MsG0280008988.01.T01 AT1G21430 26.247 381 210 17 1 374 1 317 2.25e-12 69.3
MsG0280008988.01.T01 AT1G65860 22.441 254 137 7 3 229 11 231 4.63e-12 68.6
MsG0280008988.01.T01 AT4G13260 23.569 297 173 12 7 288 30 287 1.14e-11 66.2
MsG0280008988.01.T01 AT4G32540 24.868 378 211 18 7 376 23 335 1.51e-11 66.6
MsG0280008988.01.T01 AT4G13260 23.569 297 173 12 7 288 30 287 2.62e-11 65.9
MsG0280008988.01.T01 AT4G32540 25.911 247 137 12 7 250 23 226 4.41e-11 65.5
MsG0280008988.01.T01 AT1G62620 24.303 251 136 7 5 229 13 235 4.97e-11 65.1
MsG0280008988.01.T01 AT1G62620 24.303 251 136 7 5 229 13 235 5.54e-11 65.1
MsG0280008988.01.T01 AT1G63370 23.904 251 137 7 5 229 13 235 7.22e-11 64.7
MsG0280008988.01.T01 AT1G63370 23.904 251 137 7 5 229 13 235 7.78e-11 63.9

Find 113 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCAAGATTTCAACATTT+TGG 0.077736 2:-42896027 MsG0280008988.01.T01:CDS
TTGAACTGCCAATGTAATTT+TGG 0.131877 2:+42895447 None:intergenic
AATAACTACATCTGTTTCTA+AGG 0.224263 2:+42895529 None:intergenic
CCCATGGAAAATCTGAAAAT+TGG 0.228440 2:+42899877 None:intergenic
CCCGGAGAACACTTCCTTCT+TGG 0.233331 2:-42895948 MsG0280008988.01.T01:CDS
TGGAGAAGGATGTTAAATTA+TGG 0.235292 2:-42894794 MsG0280008988.01.T01:CDS
ACACTTCCTTCTTGGCCTTT+TGG 0.237410 2:-42895940 MsG0280008988.01.T01:CDS
AGGTAAGGTTATGCATTCTA+TGG 0.272924 2:-42896356 MsG0280008988.01.T01:CDS
GAAATATCTGCATGTCAAAT+TGG 0.294249 2:-42895665 MsG0280008988.01.T01:CDS
TCAGCAGAATACATGGTAAT+TGG 0.303318 2:-42894534 MsG0280008988.01.T01:three_prime_UTR
TACCTTTGTTGAGAAATTCT+TGG 0.304695 2:+42899629 None:intergenic
ATATGAAGGCATGGGAATTA+TGG 0.304825 2:-42899710 MsG0280008988.01.T01:CDS
AGTGGTAATGGCAGTAGTTT+TGG 0.313462 2:-42899687 MsG0280008988.01.T01:CDS
TTAGTTTATTGACTCGTCTA+TGG 0.318799 2:-42894316 MsG0280008988.01.T01:three_prime_UTR
TTTGTTTATGTTATAACATA+TGG 0.320348 2:-42894286 MsG0280008988.01.T01:three_prime_UTR
GCGGAGCTATTTGAACCATA+TGG 0.339270 2:-42894642 MsG0280008988.01.T01:CDS
ACCATTTGCATTTGCGCATT+CGG 0.341818 2:+42896237 None:intergenic
TGCCCAAAATGTTGAAATCT+TGG 0.351554 2:+42896024 None:intergenic
CAATATATAGCTTTATCCTT+TGG 0.355651 2:-42894446 MsG0280008988.01.T01:three_prime_UTR
TCTTGAAGAAAACTATGATT+AGG 0.356221 2:+42895686 None:intergenic
CTTTGCATTGGGAAATATAG+TGG 0.362241 2:-42896430 MsG0280008988.01.T01:CDS
ATAACCAGCAATTTACAAAA+TGG 0.362970 2:-42900066 MsG0280008988.01.T01:exon
ATTCTTGCCACAGGATATAA+AGG 0.366577 2:-42895509 MsG0280008988.01.T01:CDS
AATAAGAGAGTTACAGTAGT+AGG 0.371604 2:-42896289 MsG0280008988.01.T01:CDS
TGCAAATATGCTCTACAGAT+TGG 0.376558 2:-42899996 MsG0280008988.01.T01:CDS
TAGCACACCTCTAAACAAAA+AGG 0.384966 2:+42894574 None:intergenic
TCTACAACTTGCTTATTACT+TGG 0.392477 2:+42899831 None:intergenic
GGGAGGAACTCAGGAATGTT+TGG 0.394469 2:+42896403 None:intergenic
GGAGAAGGATGTTAAATTAT+GGG 0.394999 2:-42894793 MsG0280008988.01.T01:CDS
GCCAAGAAGGAAGTGTTCTC+CGG 0.407386 2:+42895947 None:intergenic
TTGGAATTGAATCTTATGTA+AGG 0.408337 2:+42899771 None:intergenic
AAAATTACATTGGCAGTTCA+AGG 0.412987 2:-42895445 MsG0280008988.01.T01:CDS
AAGTTGCCACTGAAGAAGTA+TGG 0.417922 2:-42895716 MsG0280008988.01.T01:CDS
CGGAGCTATTTGAACCATAT+GGG 0.422701 2:-42894641 MsG0280008988.01.T01:CDS
TTGTTGAAACATATCTGAAA+TGG 0.425780 2:-42895739 MsG0280008988.01.T01:CDS
ATAATCTATATCAATGACTT+TGG 0.427553 2:+42899752 None:intergenic
AGCTTTAGCTTCTGCAAAGA+AGG 0.430511 2:-42895578 MsG0280008988.01.T01:CDS
TTATAATCAGTGGGCCCATA+TGG 0.433595 2:+42894627 None:intergenic
GCATTGTTACTTGTGGCATA+TGG 0.438868 2:-42894725 MsG0280008988.01.T01:CDS
GAATCTTATGTAAGGAATGA+TGG 0.442345 2:+42899779 None:intergenic
GTTCAAGGATTTCTCTCTAC+AGG 0.446784 2:-42895430 MsG0280008988.01.T01:intron
ATGATGGTGTTGGAGGACTA+TGG 0.447006 2:-42899947 MsG0280008988.01.T01:CDS
AGTTTGTTATTCTTTGCATT+GGG 0.451815 2:-42896441 MsG0280008988.01.T01:CDS
ATCCTATCATTGCCAATTGT+GGG 0.453863 2:+42894916 None:intergenic
GGCCACTTTACTTTCACCAT+TGG 0.455226 2:-42895919 MsG0280008988.01.T01:intron
TGTAATATGCCATGTTCCCT+TGG 0.457974 2:+42899662 None:intergenic
ACATCCTCGCATCCCACAAT+TGG 0.460278 2:-42894928 MsG0280008988.01.T01:CDS
GAGTTTGTTATTCTTTGCAT+TGG 0.462117 2:-42896442 MsG0280008988.01.T01:CDS
TTCTATGGATTACTCTGCCT+TGG 0.462649 2:-42896341 MsG0280008988.01.T01:CDS
AACATTCCTGAGTTCCTCCC+TGG 0.466304 2:-42896400 MsG0280008988.01.T01:CDS
CCTGAGTTCCTCCCTGGAAA+AGG 0.469202 2:-42896394 MsG0280008988.01.T01:CDS
GACGAGTCAATAAACTAAGA+AGG 0.469643 2:+42894321 None:intergenic
ATGTTATAACATATGGATTG+TGG 0.470984 2:-42894279 MsG0280008988.01.T01:three_prime_UTR
TATGGGCCCACTGATTATAA+TGG 0.482729 2:-42894624 MsG0280008988.01.T01:CDS
AAAGTTTGCTATAAATGAAA+AGG 0.487165 2:+42894351 None:intergenic
TTGGTCACCTTTATATCCTG+TGG 0.488352 2:+42895502 None:intergenic
AGAGTTGCAATTGTTGGTGC+AGG 0.491948 2:-42900038 MsG0280008988.01.T01:CDS
ATGGTAATTGGAGGGGTACA+TGG 0.492208 2:-42894522 MsG0280008988.01.T01:three_prime_UTR
TATCCTATCATTGCCAATTG+TGG 0.493186 2:+42894915 None:intergenic
TCATCAGCTTCATATACAAC+AGG 0.497177 2:+42899966 None:intergenic
GTCATTGATATAGATTATGT+TGG 0.502491 2:-42899747 MsG0280008988.01.T01:CDS
AACAAGACCATTATAATCAG+TGG 0.502752 2:+42894617 None:intergenic
ATCCCACAATTGGCAATGAT+AGG 0.504586 2:-42894918 MsG0280008988.01.T01:CDS
AGAGTTACAGTAGTAGGCTC+AGG 0.504894 2:-42896283 MsG0280008988.01.T01:CDS
AAAAGACCCTTCTTTCTCCT+CGG 0.506769 2:+42894666 None:intergenic
CTAGAAAATGTGCTAACCAT+TGG 0.509768 2:+42894850 None:intergenic
TGGGAATTATGGAGTGGTAA+TGG 0.517223 2:-42899699 MsG0280008988.01.T01:CDS
GTGAAAGTAAAGTGGCCAAA+AGG 0.517743 2:+42895925 None:intergenic
GCCGAATGCGCAAATGCAAA+TGG 0.517814 2:-42896238 MsG0280008988.01.T01:intron
TATGTTATAACATAAACAAA+AGG 0.522704 2:+42894289 None:intergenic
AAGTGGCCAAAAGGCCAAGA+AGG 0.525815 2:+42895934 None:intergenic
GATGTAGTTATTCTTGCCAC+AGG 0.531258 2:-42895518 MsG0280008988.01.T01:CDS
CCAATATTCCAAAATTACAT+TGG 0.541332 2:-42895455 MsG0280008988.01.T01:CDS
TCTCACTTCAGCAGAATACA+TGG 0.541686 2:-42894541 MsG0280008988.01.T01:three_prime_UTR
GTTCTATTTATAATCGTGCA+AGG 0.542558 2:+42896062 None:intergenic
TATGAAGCTGATGATGGTGT+TGG 0.543117 2:-42899957 MsG0280008988.01.T01:CDS
TGATGTACTCAGATAGATGC+AGG 0.544025 2:+42900098 None:intergenic
CCAAGAAGGAAGTGTTCTCC+GGG 0.546254 2:+42895948 None:intergenic
ATAACTACATCTGTTTCTAA+GGG 0.546830 2:+42895530 None:intergenic
AGCAGCAGTTTCTTTGTCCA+AGG 0.547408 2:+42896324 None:intergenic
AGAGTCTGATGAAGATATGA+AGG 0.550370 2:-42899724 MsG0280008988.01.T01:CDS
GCAGAATACATGGTAATTGG+AGG 0.551730 2:-42894531 MsG0280008988.01.T01:three_prime_UTR
GTGTAATCCGAGGAGAAAGA+AGG 0.551929 2:-42894673 MsG0280008988.01.T01:CDS
TGGAAAATCTGAAAATTGGT+AGG 0.552489 2:+42899881 None:intergenic
CTGATGAAGATATGAAGGCA+TGG 0.561630 2:-42899719 MsG0280008988.01.T01:CDS
GTTGTATATGAAGCTGATGA+TGG 0.564559 2:-42899963 MsG0280008988.01.T01:CDS
GAAGCTGATGATGGTGTTGG+AGG 0.565452 2:-42899954 MsG0280008988.01.T01:CDS
ATTGCCTAGTATAAAAGAGA+TGG 0.565732 2:-42894814 MsG0280008988.01.T01:CDS
CAGAATACATGGTAATTGGA+GGG 0.575360 2:-42894530 MsG0280008988.01.T01:three_prime_UTR
TACCAATGGTGAAAGTAAAG+TGG 0.578127 2:+42895917 None:intergenic
TACCAAGAATTTCTCAACAA+AGG 0.578314 2:-42899631 MsG0280008988.01.T01:intron
ACGAGTCAATAAACTAAGAA+GGG 0.580449 2:+42894322 None:intergenic
TGATGAAGATATGAAGGCAT+GGG 0.587590 2:-42899718 MsG0280008988.01.T01:CDS
GGCAATGATAGGATATGCTG+AGG 0.603017 2:-42894907 MsG0280008988.01.T01:CDS
AGATCATGCATTGTTACTTG+TGG 0.603581 2:-42894732 MsG0280008988.01.T01:CDS
TTCTATTTATAATCGTGCAA+GGG 0.618260 2:+42896063 None:intergenic
AGAATACATGGTAATTGGAG+GGG 0.620771 2:-42894529 MsG0280008988.01.T01:three_prime_UTR
AATAATGACAAATAAACCAA+AGG 0.621111 2:+42894430 None:intergenic
GAGCATATTTGCAAGCAAGT+AGG 0.621227 2:+42900006 None:intergenic
ATTGTTGGTGCAGGAATCAG+TGG 0.624826 2:-42900029 MsG0280008988.01.T01:CDS
ACAAGACCATTATAATCAGT+GGG 0.632491 2:+42894618 None:intergenic
TAGTATAAAAGAGATGGAGA+AGG 0.639486 2:-42894808 MsG0280008988.01.T01:CDS
TGTAATCCGAGGAGAAAGAA+GGG 0.645189 2:-42894672 MsG0280008988.01.T01:CDS
ACTAGTCCATACTTCTTCAG+TGG 0.645916 2:+42895710 None:intergenic
GAGACATGAAGTGTAATCCG+AGG 0.647245 2:-42894683 MsG0280008988.01.T01:CDS
TAGAGAAAGCACAACACTAG+TGG 0.649415 2:-42894492 MsG0280008988.01.T01:three_prime_UTR
CTAATGAAATGAGATGCCAA+TGG 0.660576 2:-42894866 MsG0280008988.01.T01:CDS
TTATAAATAGAACTTCACAC+TGG 0.667245 2:-42896052 MsG0280008988.01.T01:CDS
ATTGCCAATTGTGGGATGCG+AGG 0.681590 2:+42894924 None:intergenic
AAGGCATGGGAATTATGGAG+TGG 0.685475 2:-42899705 MsG0280008988.01.T01:CDS
GGGAACATGGCATATTACAG+TGG 0.699925 2:-42899658 MsG0280008988.01.T01:CDS
GCAATGATAGGATATGCTGA+GGG 0.702690 2:-42894906 MsG0280008988.01.T01:CDS
ATGGTGTTGGAGGACTATGG+AGG 0.798552 2:-42899944 MsG0280008988.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACACTAATATTTATATATA+TGG - Chr2:42897364-42897383 MsG0280008988.01.T01:intron 10.0%
!! TATATTTGCATATTAAAAAA+TGG + Chr2:42895372-42895391 None:intergenic 10.0%
!! TCTTACAAAAATATATAAAT+TGG + Chr2:42898569-42898588 None:intergenic 10.0%
!! TTAGTTAAATTATAAGATTA+AGG - Chr2:42895990-42896009 MsG0280008988.01.T01:CDS 10.0%
!!! TATTTTAGTTAACATTAATT+GGG - Chr2:42895610-42895629 MsG0280008988.01.T01:CDS 10.0%
!!! TGAATATTGATATTTTTTTA+AGG - Chr2:42897426-42897445 MsG0280008988.01.T01:intron 10.0%
!!! TTATTTTAGTTAACATTAAT+TGG - Chr2:42895609-42895628 MsG0280008988.01.T01:CDS 10.0%
!! AAAAATCAATGTGATTATTT+GGG + Chr2:42896322-42896341 None:intergenic 15.0%
!! AAAATTAACTCATTAATTGT+CGG - Chr2:42896178-42896197 MsG0280008988.01.T01:intron 15.0%
!! AAATTATAAGATTAAGGTTA+AGG - Chr2:42895996-42896015 MsG0280008988.01.T01:CDS 15.0%
!! AAATTATTGTTATATTGCAA+AGG + Chr2:42897894-42897913 None:intergenic 15.0%
!! AATTATTGTTATATTGCAAA+GGG + Chr2:42897893-42897912 None:intergenic 15.0%
!! AATTTAGGCTTATTAAAATA+TGG + Chr2:42897065-42897084 None:intergenic 15.0%
!! ATTATATTGTTAGTTATCTT+TGG - Chr2:42897178-42897197 MsG0280008988.01.T01:intron 15.0%
!! TAAAAATCAATGTGATTATT+TGG + Chr2:42896323-42896342 None:intergenic 15.0%
!! TACAAAAGTTAGTATATTAA+TGG + Chr2:42896050-42896069 None:intergenic 15.0%
!! TATGTTATAACATAAACAAA+AGG + Chr2:42900110-42900129 None:intergenic 15.0%
!! TGATTAAAATTGTGTATTTA+TGG - Chr2:42895128-42895147 MsG0280008988.01.T01:intron 15.0%
!! TTTGTTTATGTTATAACATA+TGG - Chr2:42900110-42900129 MsG0280008988.01.T01:five_prime_UTR 15.0%
!!! AAATATATGTTTTGAAAAAG+TGG + Chr2:42897156-42897175 None:intergenic 15.0%
!!! AACTAAGGATTTTTTTTTAA+AGG - Chr2:42897254-42897273 MsG0280008988.01.T01:intron 15.0%
!!! AATATTCCAGAAAATTTTAT+TGG - Chr2:42899641-42899660 MsG0280008988.01.T01:CDS 15.0%
!!! TATGTTTTATATGTATTTGT+AGG + Chr2:42899050-42899069 None:intergenic 15.0%
!!! TTCATATTTCATTTTCTTTT+TGG - Chr2:42894820-42894839 MsG0280008988.01.T01:CDS 15.0%
!! AAACAAAAGAAATCAATCAT+AGG - Chr2:42895397-42895416 MsG0280008988.01.T01:intron 20.0%
!! AAATATGTAAACCACTAAAT+TGG + Chr2:42899377-42899396 None:intergenic 20.0%
!! AAATTCTCTATACTAATCTA+TGG - Chr2:42899423-42899442 MsG0280008988.01.T01:intron 20.0%
!! AACATTAATTGGGAAATATT+GGG - Chr2:42895620-42895639 MsG0280008988.01.T01:CDS 20.0%
!! AAGCATATCACAATTTATTA+AGG - Chr2:42896920-42896939 MsG0280008988.01.T01:intron 20.0%
!! AATAATGACAAATAAACCAA+AGG + Chr2:42899969-42899988 None:intergenic 20.0%
!! AGAGATAAATAAAGGAAATA+TGG - Chr2:42894916-42894935 MsG0280008988.01.T01:CDS 20.0%
!! ATAATCTATATCAATGACTT+TGG + Chr2:42894647-42894666 None:intergenic 20.0%
!! ATATAAGTTGTTTATCCAAA+CGG - Chr2:42897777-42897796 MsG0280008988.01.T01:intron 20.0%
!! CAAATCATACATAAGAAAAT+AGG + Chr2:42899025-42899044 None:intergenic 20.0%
!! TAACATTAATTGGGAAATAT+TGG - Chr2:42895619-42895638 MsG0280008988.01.T01:CDS 20.0%
!! TAAGACAAAATTAACATTAG+AGG + Chr2:42897404-42897423 None:intergenic 20.0%
!! TACTTTAGTAAGATAGTATA+TGG + Chr2:42897226-42897245 None:intergenic 20.0%
!! TGTAACAAAAACATAGATAA+AGG + Chr2:42899256-42899275 None:intergenic 20.0%
!! TTGAAATATTAATAGAGTCA+AGG + Chr2:42899190-42899209 None:intergenic 20.0%
!! TTTCATAATTACAAATGTGT+TGG - Chr2:42894847-42894866 MsG0280008988.01.T01:CDS 20.0%
!!! AAAGTTTGCTATAAATGAAA+AGG + Chr2:42900048-42900067 None:intergenic 20.0%
!!! AATTTAAGATTAGCTTACAA+AGG + Chr2:42899164-42899183 None:intergenic 20.0%
!!! CAAAAAAATCTTGATAATTG+TGG - Chr2:42897561-42897580 MsG0280008988.01.T01:intron 20.0%
!!! CTATTTTCTTATGTATGATT+TGG - Chr2:42899023-42899042 MsG0280008988.01.T01:intron 20.0%
!!! GTGTTGTTATTTAATTTAGT+AGG + Chr2:42896650-42896669 None:intergenic 20.0%
!!! TCAATTGACTTTTGATTATT+AGG + Chr2:42896672-42896691 None:intergenic 20.0%
!!! TGAATATGCTTTTAAGTTTT+TGG + Chr2:42898916-42898935 None:intergenic 20.0%
!!! TGTTACGAGATTTTTTTTTT+AGG + Chr2:42895087-42895106 None:intergenic 20.0%
!!! TTCTTTTACTTTGTCAAAAA+AGG + Chr2:42898771-42898790 None:intergenic 20.0%
!!! TTTTTTGACAAAGTAAAAGA+AGG - Chr2:42898770-42898789 MsG0280008988.01.T01:intron 20.0%
! AAGATATTAACATGCAATCA+CGG - Chr2:42897855-42897874 MsG0280008988.01.T01:intron 25.0%
! AATTTATGCAGACTATGATA+CGG + Chr2:42896735-42896754 None:intergenic 25.0%
! ACAACTTATATAGATGCTTA+TGG + Chr2:42897768-42897787 None:intergenic 25.0%
! ACATTAATTGGGAAATATTG+GGG - Chr2:42895621-42895640 MsG0280008988.01.T01:CDS 25.0%
! AGAAAATGACATAGAAATGA+AGG + Chr2:42896209-42896228 None:intergenic 25.0%
! AGCGACTAATGATATATTTA+AGG + Chr2:42895884-42895903 None:intergenic 25.0%
! ATAACCAGCAATTTACAAAA+TGG - Chr2:42894330-42894349 MsG0280008988.01.T01:three_prime_UTR 25.0%
! ATATTGTTAGTTATCTTTGG+CGG - Chr2:42897181-42897200 MsG0280008988.01.T01:intron 25.0%
! ATCATAGTCTTTATAGACAA+AGG - Chr2:42896444-42896463 MsG0280008988.01.T01:CDS 25.0%
! ATTGTATGCTACTAAAACAA+AGG + Chr2:42896512-42896531 None:intergenic 25.0%
! CCAATATTCCAAAATTACAT+TGG - Chr2:42898941-42898960 MsG0280008988.01.T01:intron 25.0%
! CTTGATAAGCTATTTATGTT+TGG + Chr2:42897701-42897720 None:intergenic 25.0%
! GAAACGTTAGAGATAAATAA+AGG - Chr2:42894908-42894927 MsG0280008988.01.T01:CDS 25.0%
! GTCATTGATATAGATTATGT+TGG - Chr2:42894649-42894668 MsG0280008988.01.T01:CDS 25.0%
! TATAAGTTGTTTATCCAAAC+GGG - Chr2:42897778-42897797 MsG0280008988.01.T01:intron 25.0%
! TCAAAAATCAAGATACCATA+CGG - Chr2:42895292-42895311 MsG0280008988.01.T01:intron 25.0%
! TCAAAATAAACCAATCCAAA+GGG + Chr2:42896948-42896967 None:intergenic 25.0%
! TCTTGAAGAAAACTATGATT+AGG + Chr2:42898713-42898732 None:intergenic 25.0%
! TTATAAATAGAACTTCACAC+TGG - Chr2:42898344-42898363 MsG0280008988.01.T01:intron 25.0%
! TTCAATCCATTAATTTCTAC+AGG - Chr2:42898301-42898320 MsG0280008988.01.T01:intron 25.0%
! TTCTATTTATAATCGTGCAA+GGG + Chr2:42898336-42898355 None:intergenic 25.0%
! TTGGAATTGAATCTTATGTA+AGG + Chr2:42894628-42894647 None:intergenic 25.0%
! TTGTTGAAACATATCTGAAA+TGG - Chr2:42898657-42898676 MsG0280008988.01.T01:intron 25.0%
!! AATCTAAATTTTCAGAGATG+GGG - Chr2:42898623-42898642 MsG0280008988.01.T01:intron 25.0%
!! ATGTTATAACATATGGATTG+TGG - Chr2:42900117-42900136 MsG0280008988.01.T01:five_prime_UTR 25.0%
!! CAATCTAAATTTTCAGAGAT+GGG - Chr2:42898622-42898641 MsG0280008988.01.T01:intron 25.0%
!! TAGTGGTTTACATATTTTCT+AGG - Chr2:42899380-42899399 MsG0280008988.01.T01:intron 25.0%
!! TCTCGAGTAAAACTATATTT+TGG + Chr2:42894980-42894999 None:intergenic 25.0%
!! TGATCTCCAATAAAATTTTC+TGG + Chr2:42899650-42899669 None:intergenic 25.0%
!! TTTTCCATTTTGTAAATTGC+TGG + Chr2:42894337-42894356 None:intergenic 25.0%
!!! AAAATTAACTTGTCCTTTTC+TGG - Chr2:42897331-42897350 MsG0280008988.01.T01:intron 25.0%
!!! AATAACTACATCTGTTTCTA+AGG + Chr2:42898870-42898889 None:intergenic 25.0%
!!! AGTTTGTTATTCTTTGCATT+GGG - Chr2:42897955-42897974 MsG0280008988.01.T01:intron 25.0%
!!! ATAACTACATCTGTTTCTAA+GGG + Chr2:42898869-42898888 None:intergenic 25.0%
!!! CAATATATAGCTTTATCCTT+TGG - Chr2:42899950-42899969 MsG0280008988.01.T01:CDS 25.0%
!!! CCAATGTAATTTTGGAATAT+TGG + Chr2:42898944-42898963 None:intergenic 25.0%
!!! TTATGATCCTTTTTGTTTAG+AGG - Chr2:42899815-42899834 MsG0280008988.01.T01:CDS 25.0%
!!! TTGGATTAGTGTTTCTTTTT+TGG + Chr2:42895559-42895578 None:intergenic 25.0%
AAAATAAACCAATCCAAAGG+GGG + Chr2:42896946-42896965 None:intergenic 30.0%
AAAATTACATTGGCAGTTCA+AGG - Chr2:42898951-42898970 MsG0280008988.01.T01:intron 30.0%
AACAAGACCATTATAATCAG+TGG + Chr2:42899782-42899801 None:intergenic 30.0%
AATAAGAGAGTTACAGTAGT+AGG - Chr2:42898107-42898126 MsG0280008988.01.T01:intron 30.0%
ACAAGACCATTATAATCAGT+GGG + Chr2:42899781-42899800 None:intergenic 30.0%
ACGAGTCAATAAACTAAGAA+GGG + Chr2:42900077-42900096 None:intergenic 30.0%
ACTTTGTCAAAAAAGGAATC+AGG + Chr2:42898764-42898783 None:intergenic 30.0%
ATAAGTTGTTTATCCAAACG+GGG - Chr2:42897779-42897798 MsG0280008988.01.T01:intron 30.0%
ATAGACAAAGGAAAAAGATC+TGG - Chr2:42896456-42896475 MsG0280008988.01.T01:CDS 30.0%
ATATAGATGCTTATGGCATT+AGG + Chr2:42897761-42897780 None:intergenic 30.0%
ATTGCCTAGTATAAAAGAGA+TGG - Chr2:42899582-42899601 MsG0280008988.01.T01:intron 30.0%
CAAAATAAACCAATCCAAAG+GGG + Chr2:42896947-42896966 None:intergenic 30.0%
CCATCAATGCTATACTATAT+CGG - Chr2:42895512-42895531 MsG0280008988.01.T01:CDS 30.0%
CTCAAAATAAACCAATCCAA+AGG + Chr2:42896949-42896968 None:intergenic 30.0%
CTTTGTCAAAAAAGGAATCA+GGG + Chr2:42898763-42898782 None:intergenic 30.0%
GAAAAAAGAGTTGCAATTGT+TGG - Chr2:42894352-42894371 MsG0280008988.01.T01:three_prime_UTR 30.0%
GAAATATCTGCATGTCAAAT+TGG - Chr2:42898731-42898750 MsG0280008988.01.T01:intron 30.0%
GAATCTTATGTAAGGAATGA+TGG + Chr2:42894620-42894639 None:intergenic 30.0%
GACTGAATGTTTACAATAAC+AGG - Chr2:42897920-42897939 MsG0280008988.01.T01:intron 30.0%
GGAGAAGGATGTTAAATTAT+GGG - Chr2:42899603-42899622 MsG0280008988.01.T01:intron 30.0%
GTATCATAGTCTGCATAAAT+TGG - Chr2:42896734-42896753 MsG0280008988.01.T01:intron 30.0%
GTATCTTACATTCTTACCAA+TGG + Chr2:42898496-42898515 None:intergenic 30.0%
GTGATTCCTGTAGAAATTAA+TGG + Chr2:42898310-42898329 None:intergenic 30.0%
GTTCTATTTATAATCGTGCA+AGG + Chr2:42898337-42898356 None:intergenic 30.0%
TACCAAGAATTTCTCAACAA+AGG - Chr2:42894765-42894784 MsG0280008988.01.T01:CDS 30.0%
TACCTTTGTTGAGAAATTCT+TGG + Chr2:42894770-42894789 None:intergenic 30.0%
TAGTATAAAAGAGATGGAGA+AGG - Chr2:42899588-42899607 MsG0280008988.01.T01:intron 30.0%
TATAGATGCTTATGGCATTA+GGG + Chr2:42897760-42897779 None:intergenic 30.0%
TATCGGTGCATGATAATTAT+CGG - Chr2:42895648-42895667 MsG0280008988.01.T01:CDS 30.0%
TCACATATTATCACCTATGT+GGG + Chr2:42895232-42895251 None:intergenic 30.0%
TGGAAAATCTGAAAATTGGT+AGG + Chr2:42894518-42894537 None:intergenic 30.0%
TGGAGAAGGATGTTAAATTA+TGG - Chr2:42899602-42899621 MsG0280008988.01.T01:intron 30.0%
TTATGGTATTACAGTCACAA+TGG + Chr2:42895921-42895940 None:intergenic 30.0%
TTCACATATTATCACCTATG+TGG + Chr2:42895233-42895252 None:intergenic 30.0%
! ACAGGTGATAATGAAACAAA+GGG - Chr2:42895838-42895857 MsG0280008988.01.T01:intron 30.0%
! ACATCAATTGGACATGTTTT+TGG - Chr2:42896614-42896633 MsG0280008988.01.T01:intron 30.0%
! ACCAATTTTCAGATTTTCCA+TGG - Chr2:42894518-42894537 MsG0280008988.01.T01:three_prime_UTR 30.0%
! ACTCTCATAAGCCTTTTTAA+AGG - Chr2:42896986-42897005 MsG0280008988.01.T01:intron 30.0%
! CCAATTTTCAGATTTTCCAT+GGG - Chr2:42894519-42894538 MsG0280008988.01.T01:three_prime_UTR 30.0%
! CTCCAAGATTTCAACATTTT+GGG - Chr2:42898370-42898389 MsG0280008988.01.T01:intron 30.0%
! GCAATCTAAATTTTCAGAGA+TGG - Chr2:42898621-42898640 MsG0280008988.01.T01:intron 30.0%
! TAAATTTTCAGTTTACCCTC+CGG - Chr2:42897079-42897098 MsG0280008988.01.T01:intron 30.0%
! TCACTCATAAAATTCAGGTT+GGG + Chr2:42896822-42896841 None:intergenic 30.0%
! TCTAACTTCTCCTTTTCTTT+TGG + Chr2:42896482-42896501 None:intergenic 30.0%
! TCTACAACTTGCTTATTACT+TGG + Chr2:42894568-42894587 None:intergenic 30.0%
! TCTCCAAGATTTCAACATTT+TGG - Chr2:42898369-42898388 MsG0280008988.01.T01:intron 30.0%
! TTACCCAAACACCTTTAAAA+AGG + Chr2:42897000-42897019 None:intergenic 30.0%
! TTCTCCATCTCTTTTATACT+AGG + Chr2:42899589-42899608 None:intergenic 30.0%
! TTGAACTGCCAATGTAATTT+TGG + Chr2:42898952-42898971 None:intergenic 30.0%
!! AAAATTGGTAGGCTTGTTTT+CGG + Chr2:42894507-42894526 None:intergenic 30.0%
!! GAGTTTGTTATTCTTTGCAT+TGG - Chr2:42897954-42897973 MsG0280008988.01.T01:intron 30.0%
!! GTTTACATATTTTCTAGGAG+TGG - Chr2:42899385-42899404 MsG0280008988.01.T01:intron 30.0%
!! TTAGTTTATTGACTCGTCTA+TGG - Chr2:42900080-42900099 MsG0280008988.01.T01:five_prime_UTR 30.0%
!!! AAGCCTTTTTAAAGGTGTTT+GGG - Chr2:42896994-42897013 MsG0280008988.01.T01:intron 30.0%
!!! AGTACTGATGTGTTCTTTTT+TGG + Chr2:42895578-42895597 None:intergenic 30.0%
!!! TAAGCCTTTTTAAAGGTGTT+TGG - Chr2:42896993-42897012 MsG0280008988.01.T01:intron 30.0%
AAAGATCTGGCCAAAAGAAA+AGG - Chr2:42896469-42896488 MsG0280008988.01.T01:intron 35.0%
AAGACAGTGCAAATAGCAAT+AGG - Chr2:42896695-42896714 MsG0280008988.01.T01:intron 35.0%
AATCTATGGTAAACCACTAC+AGG - Chr2:42899437-42899456 MsG0280008988.01.T01:intron 35.0%
ACCTTACCTGTAAAAACTTC+TGG + Chr2:42898029-42898048 None:intergenic 35.0%
AGAAAAGGAGAAGTTAGAGA+AGG - Chr2:42896484-42896503 MsG0280008988.01.T01:intron 35.0%
AGAATACATGGTAATTGGAG+GGG - Chr2:42899867-42899886 MsG0280008988.01.T01:CDS 35.0%
AGAGTCTGATGAAGATATGA+AGG - Chr2:42894672-42894691 MsG0280008988.01.T01:CDS 35.0%
AGCAATTGAACTATCTACCT+TGG - Chr2:42896586-42896605 MsG0280008988.01.T01:intron 35.0%
AGGTAAGGTTATGCATTCTA+TGG - Chr2:42898040-42898059 MsG0280008988.01.T01:intron 35.0%
ATCCTATCATTGCCAATTGT+GGG + Chr2:42899483-42899502 None:intergenic 35.0%
ATTAATGTATCTCAGCCGTA+TGG + Chr2:42895310-42895329 None:intergenic 35.0%
ATTCTTGCCACAGGATATAA+AGG - Chr2:42898887-42898906 MsG0280008988.01.T01:intron 35.0%
ATTGAACTATCTACCTTGGT+TGG - Chr2:42896590-42896609 MsG0280008988.01.T01:intron 35.0%
CACATATTATCACCTATGTG+GGG + Chr2:42895231-42895250 None:intergenic 35.0%
CAGAATACATGGTAATTGGA+GGG - Chr2:42899866-42899885 MsG0280008988.01.T01:CDS 35.0%
CCCATGGAAAATCTGAAAAT+TGG + Chr2:42894522-42894541 None:intergenic 35.0%
CCTTACCTGTAAAAACTTCT+GGG + Chr2:42898028-42898047 None:intergenic 35.0%
CTAATGAAATGAGATGCCAA+TGG - Chr2:42899530-42899549 MsG0280008988.01.T01:intron 35.0%
CTAGAAAATGTGCTAACCAT+TGG + Chr2:42899549-42899568 None:intergenic 35.0%
CTGTGGACGATAAATTAATG+TGG + Chr2:42896090-42896109 None:intergenic 35.0%
CTTTGCATTGGGAAATATAG+TGG - Chr2:42897966-42897985 MsG0280008988.01.T01:intron 35.0%
GACAGTCACTCATAAAATTC+AGG + Chr2:42896827-42896846 None:intergenic 35.0%
GACGAGTCAATAAACTAAGA+AGG + Chr2:42900078-42900097 None:intergenic 35.0%
GATGTATTATTTGCCTGTAG+TGG + Chr2:42899453-42899472 None:intergenic 35.0%
GGAGGGTAAACTGAAAATTT+AGG + Chr2:42897080-42897099 None:intergenic 35.0%
GTCACTCATAAAATTCAGGT+TGG + Chr2:42896823-42896842 None:intergenic 35.0%
GTCATCCCATTTGTAAGTAT+CGG - Chr2:42895809-42895828 MsG0280008988.01.T01:intron 35.0%
GTTGTATATGAAGCTGATGA+TGG - Chr2:42894433-42894452 MsG0280008988.01.T01:three_prime_UTR 35.0%
TAAAGTAACACGCGTAACTA+AGG - Chr2:42897239-42897258 MsG0280008988.01.T01:intron 35.0%
TACAAAGGCAGAGATCAAAT+TGG + Chr2:42899149-42899168 None:intergenic 35.0%
TACAGTAGTGACCAATTTAG+TGG - Chr2:42899363-42899382 MsG0280008988.01.T01:intron 35.0%
TACCAATGGTGAAAGTAAAG+TGG + Chr2:42898482-42898501 None:intergenic 35.0%
TAGCACACCTCTAAACAAAA+AGG + Chr2:42899825-42899844 None:intergenic 35.0%
TATCCTATCATTGCCAATTG+TGG + Chr2:42899484-42899503 None:intergenic 35.0%
TCAGCAGAATACATGGTAAT+TGG - Chr2:42899862-42899881 MsG0280008988.01.T01:CDS 35.0%
TCATCAGCTTCATATACAAC+AGG + Chr2:42894433-42894452 None:intergenic 35.0%
TCATCCCATTTGTAAGTATC+GGG - Chr2:42895810-42895829 MsG0280008988.01.T01:intron 35.0%
TGCAAATATGCTCTACAGAT+TGG - Chr2:42894400-42894419 MsG0280008988.01.T01:intron 35.0%
TGCCCAAAATGTTGAAATCT+TGG + Chr2:42898375-42898394 None:intergenic 35.0%
! AGATCATGCATTGTTACTTG+TGG - Chr2:42899664-42899683 MsG0280008988.01.T01:CDS 35.0%
! ATATGAAGGCATGGGAATTA+TGG - Chr2:42894686-42894705 MsG0280008988.01.T01:CDS 35.0%
! CACAGGTGATAATGAAACAA+AGG - Chr2:42895837-42895856 MsG0280008988.01.T01:intron 35.0%
! CCGATATAGTATAGCATTGA+TGG + Chr2:42895515-42895534 None:intergenic 35.0%
! GGTGGTTTACTCAAGAATTT+TGG + Chr2:42899128-42899147 None:intergenic 35.0%
! GTGATAATGAAACAAAGGGA+TGG - Chr2:42895842-42895861 MsG0280008988.01.T01:intron 35.0%
! TCTTTTACAGAAGAATCCCA+TGG + Chr2:42894538-42894557 None:intergenic 35.0%
! TGATGAAGATATGAAGGCAT+GGG - Chr2:42894678-42894697 MsG0280008988.01.T01:CDS 35.0%
! TGGTTAGCACATTTTCTAGA+TGG - Chr2:42899550-42899569 MsG0280008988.01.T01:intron 35.0%
!! ATTTTACCGTATCGACGTAT+CGG + Chr2:42895271-42895290 None:intergenic 35.0%
!! GTACAGTTTGTTACCAGAAA+AGG + Chr2:42897347-42897366 None:intergenic 35.0%
!! TAGACATGCATTGATTCGTT+GGG - Chr2:42896555-42896574 MsG0280008988.01.T01:intron 35.0%
!! TTAGACATGCATTGATTCGT+TGG - Chr2:42896554-42896573 MsG0280008988.01.T01:intron 35.0%
AAAAGACCCTTCTTTCTCCT+CGG + Chr2:42899733-42899752 None:intergenic 40.0%
AAAGGCAGAGATCAAATTGG+TGG + Chr2:42899146-42899165 None:intergenic 40.0%
AACCAACTTGATACTCGTAC+AGG - Chr2:42896869-42896888 MsG0280008988.01.T01:intron 40.0%
AAGCCCCGATACTTACAAAT+GGG + Chr2:42895817-42895836 None:intergenic 40.0%
AAGTTGCCACTGAAGAAGTA+TGG - Chr2:42898680-42898699 MsG0280008988.01.T01:intron 40.0%
ACCATTTGCATTTGCGCATT+CGG + Chr2:42898162-42898181 None:intergenic 40.0%
ACTAGTCCATACTTCTTCAG+TGG + Chr2:42898689-42898708 None:intergenic 40.0%
ATACTCTCCTGATACGTATC+GGG - Chr2:42895671-42895690 MsG0280008988.01.T01:CDS 40.0%
ATCCCACAATTGGCAATGAT+AGG - Chr2:42899478-42899497 MsG0280008988.01.T01:intron 40.0%
CAATTTATTAAGGCCCCCTT+TGG - Chr2:42896930-42896949 MsG0280008988.01.T01:intron 40.0%
CGGAGCTATTTGAACCATAT+GGG - Chr2:42899755-42899774 MsG0280008988.01.T01:CDS 40.0%
CTGATGAAGATATGAAGGCA+TGG - Chr2:42894677-42894696 MsG0280008988.01.T01:CDS 40.0%
GAGCATATTTGCAAGCAAGT+AGG + Chr2:42894393-42894412 None:intergenic 40.0%
GATACTCTCCTGATACGTAT+CGG - Chr2:42895670-42895689 MsG0280008988.01.T01:CDS 40.0%
GATGTAGTTATTCTTGCCAC+AGG - Chr2:42898878-42898897 MsG0280008988.01.T01:intron 40.0%
GCAATGATAGGATATGCTGA+GGG - Chr2:42899490-42899509 MsG0280008988.01.T01:intron 40.0%
GCAGAATACATGGTAATTGG+AGG - Chr2:42899865-42899884 MsG0280008988.01.T01:CDS 40.0%
GTGAAAGTAAAGTGGCCAAA+AGG + Chr2:42898474-42898493 None:intergenic 40.0%
GTTCAAGGATTTCTCTCTAC+AGG - Chr2:42898966-42898985 MsG0280008988.01.T01:intron 40.0%
TAATTGGGAAATATTGGGGC+AGG - Chr2:42895625-42895644 MsG0280008988.01.T01:CDS 40.0%
TCATAAGCTCCTTGTTAAGC+CGG + Chr2:42897101-42897120 None:intergenic 40.0%
TCTCACTTCAGCAGAATACA+TGG - Chr2:42899855-42899874 MsG0280008988.01.T01:CDS 40.0%
TGATGTACTCAGATAGATGC+AGG + Chr2:42894301-42894320 None:intergenic 40.0%
TGGAAAATTCCAAGATGTGC+AGG - Chr2:42896754-42896773 MsG0280008988.01.T01:intron 40.0%
TGGGAATTATGGAGTGGTAA+TGG - Chr2:42894697-42894716 MsG0280008988.01.T01:CDS 40.0%
TGTAATATGCCATGTTCCCT+TGG + Chr2:42894737-42894756 None:intergenic 40.0%
TGTAATCCGAGGAGAAAGAA+GGG - Chr2:42899724-42899743 MsG0280008988.01.T01:CDS 40.0%
TTATAATCAGTGGGCCCATA+TGG + Chr2:42899772-42899791 None:intergenic 40.0%
TTGGTCACCTTTATATCCTG+TGG + Chr2:42898897-42898916 None:intergenic 40.0%
! AAAGGCCCAGAAGTTTTTAC+AGG - Chr2:42898020-42898039 MsG0280008988.01.T01:intron 40.0%
! AGCTTTAGCTTCTGCAAAGA+AGG - Chr2:42898818-42898837 MsG0280008988.01.T01:intron 40.0%
! CATCCCATTTGTAAGTATCG+GGG - Chr2:42895811-42895830 MsG0280008988.01.T01:intron 40.0%
! CCCAGAAGTTTTTACAGGTA+AGG - Chr2:42898025-42898044 MsG0280008988.01.T01:intron 40.0%
! GAGAAAGAAGGGTCTTTTTG+CGG - Chr2:42899735-42899754 MsG0280008988.01.T01:CDS 40.0%
! GCATTGTTACTTGTGGCATA+TGG - Chr2:42899671-42899690 MsG0280008988.01.T01:CDS 40.0%
! TAGAGAAAGCACAACACTAG+TGG - Chr2:42899904-42899923 MsG0280008988.01.T01:CDS 40.0%
! TATGGGCCCACTGATTATAA+TGG - Chr2:42899772-42899791 MsG0280008988.01.T01:CDS 40.0%
! TGATACGTATCGGGAAGTAT+CGG - Chr2:42895680-42895699 MsG0280008988.01.T01:CDS 40.0%
! TTCTATGGATTACTCTGCCT+TGG - Chr2:42898055-42898074 MsG0280008988.01.T01:intron 40.0%
!! AGACATGCATTGATTCGTTG+GGG - Chr2:42896556-42896575 MsG0280008988.01.T01:intron 40.0%
!! TATGAAGCTGATGATGGTGT+TGG - Chr2:42894439-42894458 MsG0280008988.01.T01:three_prime_UTR 40.0%
!!! AGCATTGATGGTGCTCTTTT+TGG + Chr2:42895503-42895522 None:intergenic 40.0%
!!! AGTGGTAATGGCAGTAGTTT+TGG - Chr2:42894709-42894728 MsG0280008988.01.T01:CDS 40.0%
!!! GAACTTTTAGTTCACAAGCC+CGG - Chr2:42898430-42898449 MsG0280008988.01.T01:intron 40.0%
!!! GCATTGATGGTGCTCTTTTT+GGG + Chr2:42895502-42895521 None:intergenic 40.0%
AAGGCATGGGAATTATGGAG+TGG - Chr2:42894691-42894710 MsG0280008988.01.T01:CDS 45.0%
ACCTTGGTTGGCACATCAAT+TGG - Chr2:42896602-42896621 MsG0280008988.01.T01:intron 45.0%
ACGCAATAGCATTCTGAGTC+AGG - Chr2:42896142-42896161 MsG0280008988.01.T01:intron 45.0%
AGAGTTACAGTAGTAGGCTC+AGG - Chr2:42898113-42898132 MsG0280008988.01.T01:intron 45.0%
AGAGTTGCAATTGTTGGTGC+AGG - Chr2:42894358-42894377 MsG0280008988.01.T01:three_prime_UTR 45.0%
AGCAGCAGTTTCTTTGTCCA+AGG + Chr2:42898075-42898094 None:intergenic 45.0%
ATTGTTGGTGCAGGAATCAG+TGG - Chr2:42894367-42894386 MsG0280008988.01.T01:three_prime_UTR 45.0%
CACACCATGTTGAACATCTG+TGG + Chr2:42896107-42896126 None:intergenic 45.0%
CACAGATGTTCAACATGGTG+TGG - Chr2:42896105-42896124 MsG0280008988.01.T01:intron 45.0%
GAAGCCCCGATACTTACAAA+TGG + Chr2:42895818-42895837 None:intergenic 45.0%
GACCTGTACGAGTATCAAGT+TGG + Chr2:42896874-42896893 None:intergenic 45.0%
GAGACATGAAGTGTAATCCG+AGG - Chr2:42899713-42899732 MsG0280008988.01.T01:CDS 45.0%
GATACTTCCCGATACGTATC+AGG + Chr2:42895681-42895700 None:intergenic 45.0%
GATCTAGAGAGAATCGAAGG+AGG + Chr2:42897134-42897153 None:intergenic 45.0%
GCGGAGCTATTTGAACCATA+TGG - Chr2:42899754-42899773 MsG0280008988.01.T01:CDS 45.0%
GGAAATATTGGGGCAGGTAT+CGG - Chr2:42895631-42895650 MsG0280008988.01.T01:CDS 45.0%
GGCAATGATAGGATATGCTG+AGG - Chr2:42899489-42899508 MsG0280008988.01.T01:intron 45.0%
GGGAACATGGCATATTACAG+TGG - Chr2:42894738-42894757 MsG0280008988.01.T01:CDS 45.0%
GTGGATCTAGAGAGAATCGA+AGG + Chr2:42897137-42897156 None:intergenic 45.0%
GTGTAATCCGAGGAGAAAGA+AGG - Chr2:42899723-42899742 MsG0280008988.01.T01:CDS 45.0%
TATTAAGGCCCCCTTTGGAT+TGG - Chr2:42896935-42896954 MsG0280008988.01.T01:intron 45.0%
TCCAATTGATGTGCCAACCA+AGG + Chr2:42896606-42896625 None:intergenic 45.0%
TCGTCCACAGATGTTCAACA+TGG - Chr2:42896100-42896119 MsG0280008988.01.T01:intron 45.0%
TTACACTCTTAGACCCCGTT+TGG + Chr2:42897795-42897814 None:intergenic 45.0%
! AAAACTTCTGGGCCTTTTCC+AGG + Chr2:42898017-42898036 None:intergenic 45.0%
! AAACTTCTGGGCCTTTTCCA+GGG + Chr2:42898016-42898035 None:intergenic 45.0%
! AGCAACCGAGTTTTCCCTTT+CGG - Chr2:42895199-42895218 MsG0280008988.01.T01:intron 45.0%
! ATGATGGTGTTGGAGGACTA+TGG - Chr2:42894449-42894468 MsG0280008988.01.T01:three_prime_UTR 45.0%
! ATGGTAATTGGAGGGGTACA+TGG - Chr2:42899874-42899893 MsG0280008988.01.T01:CDS 45.0%
! GGCCACTTTACTTTCACCAT+TGG - Chr2:42898477-42898496 MsG0280008988.01.T01:intron 45.0%
!! ACACTTCCTTCTTGGCCTTT+TGG - Chr2:42898456-42898475 MsG0280008988.01.T01:intron 45.0%
!! GACATGCATTGATTCGTTGG+GGG - Chr2:42896557-42896576 MsG0280008988.01.T01:intron 45.0%
!! GATACGTATCGGGAAGTATC+GGG - Chr2:42895681-42895700 MsG0280008988.01.T01:CDS 45.0%
!! GGTAGGCTTGTTTTCGGTTT+TGG + Chr2:42894501-42894520 None:intergenic 45.0%
!! GTTTTGGATCCAAGGGAACA+TGG - Chr2:42894725-42894744 MsG0280008988.01.T01:CDS 45.0%
!!! GGCAGTAGTTTTGGATCCAA+GGG - Chr2:42894718-42894737 MsG0280008988.01.T01:CDS 45.0%
!!! TGGCAGTAGTTTTGGATCCA+AGG - Chr2:42894717-42894736 MsG0280008988.01.T01:CDS 45.0%
!! TAAAAATAAAATTTAATCTT+CGG - Chr2:42895717-42895736 MsG0280008988.01.T01:CDS 5.0%
!!! TAAAGTAAAAATTTAATTTA+TGG + Chr2:42895938-42895957 None:intergenic 5.0%
AACATTCCTGAGTTCCTCCC+TGG - Chr2:42897996-42898015 MsG0280008988.01.T01:intron 50.0%
AAGCTCCTTGTTAAGCCGGA+GGG + Chr2:42897097-42897116 None:intergenic 50.0%
AAGTGGCCAAAAGGCCAAGA+AGG + Chr2:42898465-42898484 None:intergenic 50.0%
ACATCCTCGCATCCCACAAT+TGG - Chr2:42899468-42899487 MsG0280008988.01.T01:intron 50.0%
ATTGCCAATTGTGGGATGCG+AGG + Chr2:42899475-42899494 None:intergenic 50.0%
CACCACCGAAAGGGAAAACT+CGG + Chr2:42895207-42895226 None:intergenic 50.0%
GCCGAATGCGCAAATGCAAA+TGG - Chr2:42898158-42898177 MsG0280008988.01.T01:intron 50.0%
GGGAGGAACTCAGGAATGTT+TGG + Chr2:42897996-42898015 None:intergenic 50.0%
GTTTACCCTCCGGCTTAACA+AGG - Chr2:42897089-42897108 MsG0280008988.01.T01:intron 50.0%
TAAGCTCCTTGTTAAGCCGG+AGG + Chr2:42897098-42897117 None:intergenic 50.0%
! AACCGAGTTTTCCCTTTCGG+TGG - Chr2:42895202-42895221 MsG0280008988.01.T01:intron 50.0%
! ACGTATCGGTGCAGTATCGT+GGG + Chr2:42895257-42895276 None:intergenic 50.0%
! ACTGCACCGATACGTCGATA+CGG - Chr2:42895262-42895281 MsG0280008988.01.T01:intron 50.0%
! ATGGTGTTGGAGGACTATGG+AGG - Chr2:42894452-42894471 MsG0280008988.01.T01:three_prime_UTR 50.0%
!! ATGCATTGATTCGTTGGGGG+TGG - Chr2:42896560-42896579 MsG0280008988.01.T01:intron 50.0%
!! CCAAGAAGGAAGTGTTCTCC+GGG + Chr2:42898451-42898470 None:intergenic 50.0%
!! GAAGCTGATGATGGTGTTGG+AGG - Chr2:42894442-42894461 MsG0280008988.01.T01:three_prime_UTR 50.0%
!! GCCAAGAAGGAAGTGTTCTC+CGG + Chr2:42898452-42898471 None:intergenic 50.0%
!! TGTAAGTATCGGGGCTTCAC+AGG - Chr2:42895820-42895839 MsG0280008988.01.T01:intron 50.0%
ATGTGGGGACACCACCGAAA+GGG + Chr2:42895216-42895235 None:intergenic 55.0%
CCCGGAGAACACTTCCTTCT+TGG - Chr2:42898448-42898467 MsG0280008988.01.T01:intron 55.0%
CCTGAGTTCCTCCCTGGAAA+AGG - Chr2:42898002-42898021 MsG0280008988.01.T01:intron 55.0%
TATCGGTGCAGGATACGCAG+GGG - Chr2:42895777-42895796 MsG0280008988.01.T01:intron 55.0%
TATGTGGGGACACCACCGAA+AGG + Chr2:42895217-42895236 None:intergenic 55.0%
TTTCGGTGGTGTCCCCACAT+AGG - Chr2:42895216-42895235 MsG0280008988.01.T01:intron 55.0%
! CCTTTTCCAGGGAGGAACTC+AGG + Chr2:42898005-42898024 None:intergenic 55.0%
! GACGTATCGGTGCAGTATCG+TGG + Chr2:42895258-42895277 None:intergenic 55.0%
! GTATCGGTGCAGGATACGCA+GGG - Chr2:42895776-42895795 MsG0280008988.01.T01:intron 55.0%
!! GGGAAGTATCGGGCAGGTAT+CGG - Chr2:42895760-42895779 MsG0280008988.01.T01:CDS 55.0%
GGGTGTGCACCTGCACATCT+TGG + Chr2:42896766-42896785 None:intergenic 60.0%
TGCACACCCTCAATCCCAGC+TGG - Chr2:42896777-42896796 MsG0280008988.01.T01:intron 60.0%
! CTTCTGGGCCTTTTCCAGGG+AGG + Chr2:42898013-42898032 None:intergenic 60.0%
!! CGTATCGGGAAGTATCGGGC+AGG - Chr2:42895754-42895773 MsG0280008988.01.T01:CDS 60.0%
!! GGTATCGGTGCAGGATACGC+AGG - Chr2:42895775-42895794 MsG0280008988.01.T01:intron 60.0%
!! TATCGGGCAGGTATCGGTGC+AGG - Chr2:42895766-42895785 MsG0280008988.01.T01:intron 60.0%
!! TTCAGGTTGGGCGCAAAGCC+AGG + Chr2:42896810-42896829 None:intergenic 60.0%
AGCGGAGCCAGCTGGGATTG+AGG + Chr2:42896787-42896806 None:intergenic 65.0%
GCGGAGCCAGCTGGGATTGA+GGG + Chr2:42896786-42896805 None:intergenic 65.0%
GTTGGGCGCAAAGCCAGGAG+CGG + Chr2:42896805-42896824 None:intergenic 65.0%
AAGCCAGGAGCGGAGCCAGC+TGG + Chr2:42896795-42896814 None:intergenic 70.0%
AGCCAGGAGCGGAGCCAGCT+GGG + Chr2:42896794-42896813 None:intergenic 70.0%
! ATCCCAGCTGGCTCCGCTCC+TGG - Chr2:42896789-42896808 MsG0280008988.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 42894267 42900151 42894267 ID=MsG0280008988.01;Name=MsG0280008988.01
Chr2 mRNA 42894267 42900151 42894267 ID=MsG0280008988.01.T01;Parent=MsG0280008988.01;Name=MsG0280008988.01.T01;_AED=0.42;_eAED=0.42;_QI=82|1|1|1|0.8|0.66|6|309|517
Chr2 exon 42894267 42894393 42894267 ID=MsG0280008988.01.T01:exon:27400;Parent=MsG0280008988.01.T01
Chr2 exon 42894426 42894959 42894426 ID=MsG0280008988.01.T01:exon:27399;Parent=MsG0280008988.01.T01
Chr2 exon 42895431 42895780 42895431 ID=MsG0280008988.01.T01:exon:27398;Parent=MsG0280008988.01.T01
Chr2 exon 42895920 42896095 42895920 ID=MsG0280008988.01.T01:exon:27397;Parent=MsG0280008988.01.T01
Chr2 exon 42896239 42896476 42896239 ID=MsG0280008988.01.T01:exon:27396;Parent=MsG0280008988.01.T01
Chr2 exon 42899632 42900151 42899632 ID=MsG0280008988.01.T01:exon:27395;Parent=MsG0280008988.01.T01
Chr2 five_prime_UTR 42900070 42900151 42900070 ID=MsG0280008988.01.T01:five_prime_utr;Parent=MsG0280008988.01.T01
Chr2 CDS 42899632 42900069 42899632 ID=MsG0280008988.01.T01:cds;Parent=MsG0280008988.01.T01
Chr2 CDS 42896239 42896476 42896239 ID=MsG0280008988.01.T01:cds;Parent=MsG0280008988.01.T01
Chr2 CDS 42895920 42896095 42895920 ID=MsG0280008988.01.T01:cds;Parent=MsG0280008988.01.T01
Chr2 CDS 42895431 42895780 42895431 ID=MsG0280008988.01.T01:cds;Parent=MsG0280008988.01.T01
Chr2 CDS 42894608 42894959 42894608 ID=MsG0280008988.01.T01:cds;Parent=MsG0280008988.01.T01
Chr2 three_prime_UTR 42894426 42894607 42894426 ID=MsG0280008988.01.T01:three_prime_utr;Parent=MsG0280008988.01.T01
Chr2 three_prime_UTR 42894267 42894393 42894267 ID=MsG0280008988.01.T01:three_prime_utr;Parent=MsG0280008988.01.T01
Gene Sequence

>MsG0280008988.01.T01

ATGGAAAAAAGAGTTGCAATTGTTGGTGCAGGAATCAGTGGCCTACTTGCTTGCAAATATGCTCTACAGATTGGTTTTAATCCTGTTGTATATGAAGCTGATGATGGTGTTGGAGGACTATGGAGGCATACTATTGAATCTACTAAACTCCAAAACCGAAAACAAGCCTACCAATTTTCAGATTTTCCATGGGATTCTTCTGTAAAAGAAGTTTGTCCAAGTAATAAGCAAGTTGTAGATTATGTTGAATCATATGCTCAACATTTTTCCATCATTCCTTACATAAGATTCAATTCCAAAGTCATTGATATAGATTATGTTGGAGAGTCTGATGAAGATATGAAGGCATGGGAATTATGGAGTGGTAATGGCAGTAGTTTTGGATCCAAGGGAACATGGCATATTACAGTGGAAGATACCAAGAATTTCTCAACAAAGGTACATAAAGCAGAGTTTGTTATTCTTTGCATTGGGAAATATAGTGGTTTTCCAAACATTCCTGAGTTCCTCCCTGGAAAAGGCCCAGAAGTTTTTACAGGTAAGGTTATGCATTCTATGGATTACTCTGCCTTGGACAAAGAAACTGCTGCTAAATTGATAAAAAATAAGAGAGTTACAGTAGTAGGCTCAGGAAAATCTGCTCTTGATATAGCTGCCGAATGCGCAAATGCAAATGGAATCACTCACCCTTGCACGATTATAAATAGAACTTCACACTGGTTTCTCCAAGATTTCAACATTTTGGGCATTCGTCTCAGATACTTGTATTTCAATCGTTTCGCAGAACTTTTAGTTCACAAGCCCGGAGAACACTTCCTTCTTGGCCTTTTGGCCACTTTACTTTCACCATTGAGATGGGGAATTTCTAAACTTGTTGAAACATATCTGAAATGGAAGTTGCCACTGAAGAAGTATGGACTAGTACCTAATCATAGTTTTCTTCAAGAAATATCTGCATGTCAAATTGGAATTCTCCCTGATTCCTTTTTTGACAAAGTAAAAGAAGGATCTATCATGATAAAGAAATCACAAAGCTTTAGCTTCTGCAAAGAAGGTTTGATCATCAATGAAGAAGCTAAGCCCTTAGAAACAGATGTAGTTATTCTTGCCACAGGATATAAAGGTGACCAAAAACTTAAAAGCATATTCAAGTCTCCAATATTCCAAAATTACATTGGCAGTTCAAGGATTTCTCTCTACAGGCAAATAATACATCCTCGCATCCCACAATTGGCAATGATAGGATATGCTGAGGGAATATCAAATATTGTTTCTAATGAAATGAGATGCCAATGGTTAGCACATTTTCTAGATGGAAACATTGAATTGCCTAGTATAAAAGAGATGGAGAAGGATGTTAAATTATGGGAAGACAACATGAAGCAATATTCCAGAAAATTTTATTGGAGATCATGCATTGTTACTTGTGGCATATGGTATAATGATCAATTGTGCAGAGACATGAAGTGTAATCCGAGGAGAAAGAAGGGTCTTTTTGCGGAGCTATTTGAACCATATGGGCCCACTGATTATAATGGTCTTGTTCGTAAATGA
Protein sequence

>MsG0280008988.01.T01

MEKRVAIVGAGISGLLACKYALQIGFNPVVYEADDGVGGLWRHTIESTKLQNRKQAYQFSDFPWDSSVKEVCPSNKQVVDYVESYAQHFSIIPYIRFNSKVIDIDYVGESDEDMKAWELWSGNGSSFGSKGTWHITVEDTKNFSTKVHKAEFVILCIGKYSGFPNIPEFLPGKGPEVFTGKVMHSMDYSALDKETAAKLIKNKRVTVVGSGKSALDIAAECANANGITHPCTIINRTSHWFLQDFNILGIRLRYLYFNRFAELLVHKPGEHFLLGLLATLLSPLRWGISKLVETYLKWKLPLKKYGLVPNHSFLQEISACQIGILPDSFFDKVKEGSIMIKKSQSFSFCKEGLIINEEAKPLETDVVILATGYKGDQKLKSIFKSPIFQNYIGSSRISLYRQIIHPRIPQLAMIGYAEGISNIVSNEMRCQWLAHFLDGNIELPSIKEMEKDVKLWEDNMKQYSRKFYWRSCIVTCGIWYNDQLCRDMKCNPRRKKGLFAELFEPYGPTDYNGLVRK*