AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009641.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009641.01.T01 MTR_2g068880 91.026 312 26 2 1 310 1 312 0.0 593
MsG0280009641.01.T01 MTR_2g068920 80.386 311 40 3 1 310 1 291 0.0 510
MsG0280009641.01.T01 MTR_5g090970 52.000 300 133 8 9 304 6 298 1.10e-94 283
MsG0280009641.01.T01 MTR_5g090970 51.333 300 134 8 9 304 6 297 2.80e-93 279
MsG0280009641.01.T01 MTR_5g040420 52.137 234 98 5 18 243 11 238 1.16e-74 234
MsG0280009641.01.T01 MTR_8g467490 62.500 168 58 3 18 185 11 173 2.14e-72 229
MsG0280009641.01.T01 MTR_6g011860 57.143 189 59 6 3 185 1 173 4.91e-67 215
MsG0280009641.01.T01 MTR_4g134460 50.296 169 67 4 17 185 50 201 3.88e-50 172
MsG0280009641.01.T01 MTR_5g012080 42.254 213 98 6 20 224 7 202 1.51e-49 168
MsG0280009641.01.T01 MTR_3g088110 54.601 163 60 6 23 185 9 157 7.77e-49 164
MsG0280009641.01.T01 MTR_4g036030 46.199 171 72 4 20 188 7 159 1.50e-48 166
MsG0280009641.01.T01 MTR_7g085220 47.929 169 75 5 23 186 10 170 1.59e-48 165
MsG0280009641.01.T01 MTR_2g079990 52.071 169 65 4 23 191 18 170 2.40e-48 165
MsG0280009641.01.T01 MTR_8g094580 45.361 194 93 5 23 216 9 189 2.45e-48 163
MsG0280009641.01.T01 MTR_2g080010 45.930 172 82 4 23 190 17 181 3.96e-48 164
MsG0280009641.01.T01 MTR_2157s0010 45.783 166 82 4 23 186 10 169 1.07e-47 161
MsG0280009641.01.T01 MTR_4g089135 46.667 180 77 4 23 188 17 191 1.16e-47 163
MsG0280009641.01.T01 MTR_8g059170 51.149 174 65 6 23 193 16 172 2.19e-47 162
MsG0280009641.01.T01 MTR_5g041940 37.546 269 134 8 23 279 5 251 3.42e-47 159
MsG0280009641.01.T01 MTR_4g101680 44.809 183 79 5 20 198 7 171 3.71e-47 162
MsG0280009641.01.T01 MTR_4g081870 50.000 164 68 4 23 185 11 161 1.11e-46 159
MsG0280009641.01.T01 MTR_7g100990 40.097 207 107 5 23 229 13 202 2.38e-46 159
MsG0280009641.01.T01 MTR_6g012670 36.782 261 141 8 23 277 22 264 7.11e-46 158
MsG0280009641.01.T01 MTR_6g477900 37.281 228 105 6 23 241 8 206 8.17e-46 155
MsG0280009641.01.T01 MTR_2g064090 45.783 166 75 3 23 187 8 159 9.94e-46 158
MsG0280009641.01.T01 MTR_2g079990 47.312 186 76 5 23 191 18 198 2.17e-45 158
MsG0280009641.01.T01 MTR_3g435150 45.714 175 81 3 17 191 12 172 2.82e-45 155
MsG0280009641.01.T01 MTR_2g093810 45.238 168 82 3 23 190 16 173 6.72e-45 155
MsG0280009641.01.T01 MTR_4g108760 44.318 176 83 4 19 194 16 176 1.06e-44 156
MsG0280009641.01.T01 MTR_5g021710 41.000 200 98 4 20 217 8 189 1.36e-44 155
MsG0280009641.01.T01 MTR_3g064580 47.273 165 72 3 23 186 8 158 1.78e-44 160
MsG0280009641.01.T01 MTR_3g096920 49.080 163 69 6 23 185 9 157 2.04e-44 153
MsG0280009641.01.T01 MTR_7g005280 45.304 181 79 5 13 192 6 167 2.84e-44 152
MsG0280009641.01.T01 MTR_2g062730 37.903 248 119 9 20 262 10 227 3.43e-44 154
MsG0280009641.01.T01 MTR_7g085260 45.455 176 85 4 19 194 16 180 5.49e-44 154
MsG0280009641.01.T01 MTR_6g032770 47.368 171 77 4 17 186 13 171 6.10e-44 154
MsG0280009641.01.T01 MTR_8g024480 45.238 168 83 4 20 185 15 175 2.18e-43 154
MsG0280009641.01.T01 MTR_8g076110 44.444 171 75 4 20 188 6 158 2.83e-43 151
MsG0280009641.01.T01 MTR_5g076850 45.833 168 69 4 23 186 8 157 3.54e-43 157
MsG0280009641.01.T01 MTR_3g096920 42.708 192 75 6 23 185 9 194 1.33e-42 149
MsG0280009641.01.T01 MTR_4g098630 39.524 210 104 6 23 231 8 195 2.43e-41 146
MsG0280009641.01.T01 MTR_6g084430 41.714 175 83 4 17 191 2 157 3.11e-41 146
MsG0280009641.01.T01 MTR_7g011130 33.929 336 172 11 1 301 1 321 3.32e-41 146
MsG0280009641.01.T01 MTR_1g096430 43.636 165 74 3 23 185 9 156 5.62e-41 145
MsG0280009641.01.T01 MTR_3g109340 42.781 187 91 5 5 191 7 177 9.53e-41 145
MsG0280009641.01.T01 MTR_3g070030 34.576 295 165 11 3 283 1 281 1.19e-40 145
MsG0280009641.01.T01 MTR_3g109340 41.711 187 92 4 5 191 7 176 1.81e-40 144
MsG0280009641.01.T01 MTR_4g075980 41.053 190 88 4 1 190 1 166 2.07e-40 143
MsG0280009641.01.T01 MTR_5g014300 42.857 168 78 3 23 186 8 161 2.47e-40 144
MsG0280009641.01.T01 MTR_1g090723 45.349 172 77 5 23 192 10 166 3.46e-40 148
MsG0280009641.01.T01 MTR_8g099750 45.783 166 79 4 23 188 16 170 4.06e-40 140
MsG0280009641.01.T01 MTR_1g090723 44.186 172 78 4 23 192 10 165 5.38e-40 147
MsG0280009641.01.T01 MTR_1g090723 44.186 172 78 4 23 192 10 165 6.18e-40 148
MsG0280009641.01.T01 MTR_2g078700 44.118 170 82 4 17 186 20 176 9.42e-40 143
MsG0280009641.01.T01 MTR_4g035590 37.619 210 100 7 20 227 8 188 1.72e-39 142
MsG0280009641.01.T01 MTR_1g008740 40.217 184 94 4 9 191 1 169 2.43e-39 141
MsG0280009641.01.T01 MTR_1g008740 39.894 188 97 4 5 191 11 183 2.75e-39 142
MsG0280009641.01.T01 MTR_7g011120 34.532 278 163 7 9 283 1 262 2.76e-39 140
MsG0280009641.01.T01 MTR_2g064470 46.341 164 71 5 23 186 13 159 4.22e-39 140
MsG0280009641.01.T01 MTR_0036s0150 44.767 172 77 5 23 192 7 162 4.82e-38 141
MsG0280009641.01.T01 MTR_3g098810 38.424 203 100 3 23 225 16 193 1.03e-37 134
MsG0280009641.01.T01 MTR_1g097300 41.279 172 85 4 22 192 20 176 1.29e-37 140
MsG0280009641.01.T01 MTR_8g063550 40.698 172 86 3 22 192 7 163 1.71e-37 136
MsG0280009641.01.T01 MTR_2g086880 42.581 155 78 3 22 169 19 169 2.97e-37 140
MsG0280009641.01.T01 MTR_3g096140 40.116 172 87 3 22 192 8 164 2.97e-37 134
MsG0280009641.01.T01 MTR_1g069805 36.681 229 115 8 23 248 12 213 3.01e-37 134
MsG0280009641.01.T01 MTR_8g063550 40.698 172 86 3 22 192 7 163 3.76e-37 137
MsG0280009641.01.T01 MTR_2g086880 42.581 155 78 3 22 169 19 169 3.86e-37 139
MsG0280009641.01.T01 MTR_5g069030 43.713 167 77 5 20 185 25 175 5.34e-37 139
MsG0280009641.01.T01 MTR_8g063550 40.698 172 86 3 22 192 7 163 8.86e-37 136
MsG0280009641.01.T01 MTR_1g090720 44.242 165 82 3 23 186 44 199 1.04e-36 137
MsG0280009641.01.T01 MTR_3g096140 40.116 172 87 3 22 192 8 164 1.57e-36 134
MsG0280009641.01.T01 MTR_3g116070 49.242 132 63 3 23 153 25 153 1.57e-36 134
MsG0280009641.01.T01 MTR_3g093050 41.011 178 88 5 10 186 12 173 3.27e-36 137
MsG0280009641.01.T01 MTR_8g093580 39.535 172 88 3 22 192 7 163 3.47e-36 135
MsG0280009641.01.T01 MTR_3g093050 41.011 178 88 5 10 186 12 173 4.66e-36 137
MsG0280009641.01.T01 MTR_3g093040 40.476 168 83 6 20 186 108 259 2.50e-34 127
MsG0280009641.01.T01 MTR_7g097090 41.615 161 76 3 23 183 12 154 4.20e-34 126
MsG0280009641.01.T01 MTR_3g098810 46.565 131 67 1 23 153 16 143 1.66e-33 121
MsG0280009641.01.T01 MTR_3g070040 39.053 169 87 4 25 192 12 165 1.10e-32 123
MsG0280009641.01.T01 MTR_8g023840 47.368 133 64 5 19 149 10 138 2.77e-32 124
MsG0280009641.01.T01 MTR_4g052620 40.838 191 94 8 18 203 2 178 8.17e-32 119
MsG0280009641.01.T01 MTR_8g023860 45.522 134 67 5 18 149 10 139 3.42e-29 115
MsG0280009641.01.T01 MTR_7g105170 33.846 195 111 8 18 207 2 183 9.91e-29 111
MsG0280009641.01.T01 MTR_2g086690 34.536 194 109 6 23 211 6 186 7.15e-28 108
MsG0280009641.01.T01 MTR_8g023900 36.313 179 94 6 9 185 1 161 1.26e-26 109
MsG0280009641.01.T01 MTR_8g023900 38.415 164 80 5 24 185 196 340 2.19e-26 108
MsG0280009641.01.T01 MTR_3g096140 36.306 157 84 3 37 192 2 143 1.33e-26 107
MsG0280009641.01.T01 MTR_8g094580 39.860 143 74 4 74 216 5 135 1.14e-24 99.8
MsG0280009641.01.T01 MTR_8g023930 34.286 210 108 8 18 225 22 203 1.49e-24 103
MsG0280009641.01.T01 MTR_4g094302 32.934 167 90 5 23 186 13 160 1.62e-24 98.6
MsG0280009641.01.T01 MTR_4g094302 37.879 132 65 4 23 151 13 130 2.79e-23 94.4
MsG0280009641.01.T01 MTR_7g070140 50.000 80 38 1 75 154 17 94 2.03e-19 83.2
MsG0280009641.01.T01 MTR_8g023880 33.690 187 85 9 24 194 10 173 1.39e-18 84.0
MsG0280009641.01.T01 MTR_7g083330 35.570 149 78 7 9 149 3 141 2.50e-18 81.6
MsG0280009641.01.T01 MTR_8g093790 30.675 163 77 7 23 185 12 138 4.44e-17 78.2
MsG0280009641.01.T01 MTR_7g083370 33.333 135 80 6 17 149 7 133 8.51e-17 76.3
MsG0280009641.01.T01 MTR_1g087190 64.583 48 16 1 23 69 7 54 1.87e-16 72.8
MsG0280009641.01.T01 MTR_7g083360 34.286 140 84 5 19 156 7 140 3.27e-16 75.1
MsG0280009641.01.T01 MTR_3g096400 29.940 167 97 6 23 184 9 160 8.72e-16 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009641.01.T01 AT2G43000 65.829 199 50 5 16 211 13 196 1.75e-85 258
MsG0280009641.01.T01 AT3G12910 47.973 296 132 9 16 304 16 296 1.58e-82 251
MsG0280009641.01.T01 AT1G26870 45.486 288 126 7 18 305 13 269 3.24e-70 224
MsG0280009641.01.T01 AT5G39820 59.777 179 57 4 18 185 17 191 3.70e-69 219
MsG0280009641.01.T01 AT3G04070 50.303 165 76 3 23 186 12 171 9.26e-54 179
MsG0280009641.01.T01 AT3G04070 48.023 177 78 4 23 186 12 187 1.41e-52 176
MsG0280009641.01.T01 AT1G61110 49.444 180 76 4 23 196 18 188 2.08e-51 172
MsG0280009641.01.T01 AT2G02450 51.829 164 62 4 22 185 52 198 2.15e-51 174
MsG0280009641.01.T01 AT2G02450 51.829 164 62 4 22 185 52 198 2.46e-51 174
MsG0280009641.01.T01 AT1G01720 40.541 259 129 8 23 278 9 245 2.70e-50 168
MsG0280009641.01.T01 AT1G69490 50.307 163 69 3 23 185 11 161 5.78e-50 167
MsG0280009641.01.T01 AT1G12260 37.786 262 131 7 20 269 7 248 3.33e-49 167
MsG0280009641.01.T01 AT5G08790 45.098 204 91 8 24 226 10 193 1.73e-48 164
MsG0280009641.01.T01 AT1G12260 46.067 178 76 4 20 195 7 166 3.75e-48 166
MsG0280009641.01.T01 AT4G27410 49.432 176 72 5 23 197 16 175 9.53e-48 162
MsG0280009641.01.T01 AT2G43000 64.885 131 29 4 84 211 2 118 1.45e-47 158
MsG0280009641.01.T01 AT1G52890 49.714 175 68 4 23 195 16 172 1.87e-47 162
MsG0280009641.01.T01 AT3G15500 50.292 171 65 4 23 191 16 168 4.24e-47 161
MsG0280009641.01.T01 AT3G15510 47.059 170 79 4 25 190 21 183 9.06e-47 161
MsG0280009641.01.T01 AT5G63790 45.312 192 87 7 24 215 53 226 1.31e-46 159
MsG0280009641.01.T01 AT5G61430 44.385 187 85 5 19 201 15 186 1.50e-46 160
MsG0280009641.01.T01 AT5G63790 45.312 192 87 7 24 215 63 236 1.69e-46 159
MsG0280009641.01.T01 AT5G07680 34.767 279 156 7 16 288 11 269 2.97e-46 159
MsG0280009641.01.T01 AT5G62380 45.238 168 73 3 23 188 9 159 2.99e-46 159
MsG0280009641.01.T01 AT5G62380 45.238 168 73 3 23 188 9 159 2.99e-46 159
MsG0280009641.01.T01 AT5G07680 34.909 275 153 7 19 288 2 255 3.02e-46 159
MsG0280009641.01.T01 AT3G17730 45.833 168 69 4 23 186 8 157 3.31e-46 156
MsG0280009641.01.T01 AT5G13180 45.405 185 82 4 9 192 1 167 5.81e-46 156
MsG0280009641.01.T01 AT1G77450 48.000 175 77 6 23 197 12 172 9.47e-46 155
MsG0280009641.01.T01 AT3G61910 35.887 248 143 6 23 260 13 254 1.25e-45 157
MsG0280009641.01.T01 AT3G03200 43.915 189 85 5 23 210 8 176 2.36e-45 160
MsG0280009641.01.T01 AT1G71930 38.189 254 116 8 23 262 11 237 3.43e-45 156
MsG0280009641.01.T01 AT1G71930 38.189 254 116 8 23 262 11 237 3.43e-45 156
MsG0280009641.01.T01 AT5G39610 45.304 181 84 4 12 191 10 176 3.69e-45 155
MsG0280009641.01.T01 AT1G62700 45.614 171 73 4 20 188 7 159 7.02e-45 157
MsG0280009641.01.T01 AT1G62700 45.614 171 73 4 20 188 7 159 7.02e-45 157
MsG0280009641.01.T01 AT2G18060 46.023 176 74 5 20 192 9 166 7.14e-45 156
MsG0280009641.01.T01 AT2G18060 46.023 176 74 5 20 192 9 166 7.14e-45 156
MsG0280009641.01.T01 AT4G36160 44.865 185 80 5 12 192 2 168 8.54e-45 156
MsG0280009641.01.T01 AT4G36160 44.865 185 80 5 12 192 2 168 8.54e-45 156
MsG0280009641.01.T01 AT1G65910 45.902 183 79 5 23 203 8 172 8.75e-45 161
MsG0280009641.01.T01 AT4G36160 45.455 176 76 4 12 185 6 163 8.83e-45 157
MsG0280009641.01.T01 AT4G27410 44.000 200 80 6 23 205 16 200 9.61e-45 155
MsG0280009641.01.T01 AT5G17260 44.253 174 74 4 23 191 8 163 2.39e-44 157
MsG0280009641.01.T01 AT3G04060 48.235 170 72 5 19 187 19 173 3.09e-44 154
MsG0280009641.01.T01 AT5G18270 47.929 169 72 5 19 186 20 173 3.31e-44 154
MsG0280009641.01.T01 AT5G18270 47.337 169 73 5 19 186 20 173 1.49e-43 152
MsG0280009641.01.T01 AT2G46770 43.860 171 80 4 23 185 18 180 1.82e-43 153
MsG0280009641.01.T01 AT3G12977 38.723 235 107 9 23 254 20 220 1.95e-43 150
MsG0280009641.01.T01 AT2G17040 44.118 170 77 3 19 188 4 155 2.50e-43 150
MsG0280009641.01.T01 AT2G33480 47.590 166 68 4 23 188 17 163 2.71e-43 150
MsG0280009641.01.T01 AT1G52880 51.220 164 76 3 25 188 21 180 4.84e-43 150
MsG0280009641.01.T01 AT2G33480 47.590 166 66 4 23 188 17 161 5.83e-43 149
MsG0280009641.01.T01 AT3G18400 44.571 175 79 5 17 191 2 158 8.90e-43 149
MsG0280009641.01.T01 AT1G54330 45.783 166 71 3 23 187 8 155 1.15e-42 149
MsG0280009641.01.T01 AT1G76420 44.767 172 77 5 23 193 24 178 2.63e-42 149
MsG0280009641.01.T01 AT5G66300 38.318 214 108 5 23 228 14 211 3.02e-42 147
MsG0280009641.01.T01 AT3G29035 49.045 157 72 4 14 168 16 166 3.24e-42 148
MsG0280009641.01.T01 AT3G10500 45.614 171 77 4 23 192 11 166 1.24e-41 151
MsG0280009641.01.T01 AT2G24430 43.182 176 84 5 16 191 12 171 2.28e-41 146
MsG0280009641.01.T01 AT2G24430 43.182 176 84 5 16 191 12 171 2.28e-41 146
MsG0280009641.01.T01 AT5G46590 50.000 130 61 2 23 151 8 134 4.57e-41 144
MsG0280009641.01.T01 AT1G79580 43.030 165 75 4 23 185 19 166 5.96e-41 146
MsG0280009641.01.T01 AT1G79580 43.030 165 75 4 23 185 19 166 5.96e-41 146
MsG0280009641.01.T01 AT1G79580 43.030 165 75 4 23 185 19 166 5.96e-41 146
MsG0280009641.01.T01 AT1G79580 43.030 165 75 4 23 185 19 166 5.96e-41 146
MsG0280009641.01.T01 AT1G79580 43.030 165 75 4 23 185 19 166 5.96e-41 146
MsG0280009641.01.T01 AT5G46590 50.000 130 61 2 23 151 8 134 8.61e-41 144
MsG0280009641.01.T01 AT1G32510 40.556 180 93 3 23 198 8 177 1.33e-40 143
MsG0280009641.01.T01 AT4G17980 44.848 165 79 4 23 186 8 161 1.85e-40 142
MsG0280009641.01.T01 AT5G04410 46.784 171 75 5 23 192 11 166 2.14e-40 148
MsG0280009641.01.T01 AT3G15170 41.989 181 91 4 16 194 15 183 2.96e-40 143
MsG0280009641.01.T01 AT4G17980 44.848 165 79 4 23 186 8 161 3.71e-40 142
MsG0280009641.01.T01 AT3G10480 43.636 165 77 4 23 186 29 178 5.62e-40 145
MsG0280009641.01.T01 AT1G56010 44.571 175 80 5 23 193 21 182 7.86e-40 142
MsG0280009641.01.T01 AT3G10480 43.636 165 78 4 23 186 29 179 7.87e-40 145
MsG0280009641.01.T01 AT4G10350 39.899 198 87 6 20 215 9 176 8.90e-40 142
MsG0280009641.01.T01 AT1G32770 41.040 173 89 4 23 190 18 182 1.32e-39 142
MsG0280009641.01.T01 AT1G33280 43.030 165 74 4 23 185 10 156 1.55e-38 138
MsG0280009641.01.T01 AT1G34180 42.105 171 83 4 23 192 18 173 2.20e-38 141
MsG0280009641.01.T01 AT3G10490 41.818 165 81 5 23 186 29 179 2.72e-38 135
MsG0280009641.01.T01 AT1G34190 42.690 171 82 4 23 192 18 173 4.46e-38 142
MsG0280009641.01.T01 AT2G27300 46.094 128 65 1 22 149 15 138 7.44e-38 137
MsG0280009641.01.T01 AT1G34180 42.105 171 83 4 23 192 18 173 8.22e-38 141
MsG0280009641.01.T01 AT3G10490 41.818 165 81 5 23 186 29 179 1.98e-37 139
MsG0280009641.01.T01 AT4G35580 44.379 169 77 6 18 185 7 159 2.15e-37 140
MsG0280009641.01.T01 AT4G35580 44.379 169 77 6 18 185 7 159 2.19e-37 140
MsG0280009641.01.T01 AT4G35580 44.379 169 77 6 18 185 7 159 2.32e-37 139
MsG0280009641.01.T01 AT5G09330 39.181 171 88 3 23 192 8 163 4.44e-37 138
MsG0280009641.01.T01 AT5G09330 39.181 171 88 3 23 192 8 163 4.44e-37 138
MsG0280009641.01.T01 AT5G09330 39.181 171 88 3 23 192 8 163 4.44e-37 138
MsG0280009641.01.T01 AT5G09330 39.181 171 88 3 23 192 8 163 4.44e-37 138
MsG0280009641.01.T01 AT5G09330 39.181 171 88 3 23 192 8 163 4.44e-37 138
MsG0280009641.01.T01 AT5G53950 42.222 180 91 5 15 194 12 178 8.53e-37 135
MsG0280009641.01.T01 AT3G44290 42.969 128 69 1 22 149 15 138 1.13e-36 131
MsG0280009641.01.T01 AT5G22290 43.750 128 68 1 22 149 22 145 3.92e-36 133
MsG0280009641.01.T01 AT3G44290 42.969 128 69 1 22 149 15 138 7.20e-36 132
MsG0280009641.01.T01 AT1G33060 48.485 132 62 3 20 150 24 150 8.30e-36 136
MsG0280009641.01.T01 AT1G33060 48.485 132 62 3 20 150 24 150 8.47e-36 136
MsG0280009641.01.T01 AT1G34180 39.344 183 83 4 23 192 18 185 9.71e-36 134
MsG0280009641.01.T01 AT1G34180 39.344 183 83 4 23 192 18 185 3.04e-35 134
MsG0280009641.01.T01 AT5G64060 38.788 165 85 3 23 186 8 157 1.66e-34 129
MsG0280009641.01.T01 AT3G10480 36.364 198 78 4 23 186 29 212 2.66e-34 131
MsG0280009641.01.T01 AT3G49530 45.390 141 72 4 11 150 4 140 1.56e-33 127
MsG0280009641.01.T01 AT5G24590 48.855 131 62 3 22 150 13 140 2.21e-33 127
MsG0280009641.01.T01 AT3G49530 45.390 141 72 4 11 150 4 140 3.97e-33 127
MsG0280009641.01.T01 AT4G28530 41.111 180 70 6 23 185 12 172 4.44e-31 119
MsG0280009641.01.T01 AT5G04395 39.333 150 77 3 14 151 22 169 9.58e-31 114
MsG0280009641.01.T01 AT3G44350 33.878 245 132 11 24 261 8 229 8.56e-29 111
MsG0280009641.01.T01 AT3G12977 38.462 182 76 8 76 254 19 167 9.84e-29 110
MsG0280009641.01.T01 AT5G61430 43.182 132 58 3 74 201 5 123 9.86e-29 111
MsG0280009641.01.T01 AT5G64530 34.104 173 96 6 23 192 5 162 4.19e-28 107
MsG0280009641.01.T01 AT5G22380 30.802 237 140 8 18 243 3 226 1.61e-27 107
MsG0280009641.01.T01 AT1G32870 39.306 173 85 5 23 192 12 167 7.42e-27 110
MsG0280009641.01.T01 AT1G32870 39.306 173 85 5 23 192 12 167 7.66e-27 110
MsG0280009641.01.T01 AT1G32870 39.306 173 85 5 23 192 48 203 1.11e-26 110
MsG0280009641.01.T01 AT5G64530 40.000 130 63 4 23 152 5 119 9.88e-26 100
MsG0280009641.01.T01 AT3G44350 40.141 142 74 4 24 159 8 144 2.45e-25 99.8
MsG0280009641.01.T01 AT4G01550 41.667 132 74 3 22 151 5 135 2.85e-24 102
MsG0280009641.01.T01 AT1G56010 43.802 121 53 3 76 193 7 115 6.60e-24 98.6
MsG0280009641.01.T01 AT4G01540 42.105 133 73 4 22 151 5 136 6.55e-23 98.2
MsG0280009641.01.T01 AT4G01540 42.105 133 73 4 22 151 5 136 6.83e-23 98.2
MsG0280009641.01.T01 AT4G01540 42.105 133 73 4 22 151 5 136 8.03e-23 98.2
MsG0280009641.01.T01 AT4G01540 42.105 133 73 4 22 151 5 136 8.33e-23 98.6
MsG0280009641.01.T01 AT4G01520 40.458 131 74 4 24 151 7 136 1.05e-22 96.3
MsG0280009641.01.T01 AT2G33480 44.348 115 49 3 74 188 7 106 1.42e-22 94.0
MsG0280009641.01.T01 AT4G10350 38.298 141 58 4 75 215 18 129 3.83e-21 91.7
MsG0280009641.01.T01 AT1G02230 40.602 133 72 5 24 153 6 134 7.93e-20 89.0
MsG0280009641.01.T01 AT1G02250 40.310 129 70 5 24 149 6 130 2.87e-19 87.4
MsG0280009641.01.T01 AT3G04420 38.760 129 72 4 24 149 6 130 1.32e-18 84.7
MsG0280009641.01.T01 AT3G04420 38.760 129 72 4 24 149 6 130 3.77e-18 84.0
MsG0280009641.01.T01 AT4G28530 43.925 107 41 3 23 112 12 116 9.29e-18 82.4
MsG0280009641.01.T01 AT5G50820 35.556 135 72 5 23 154 19 141 1.56e-16 77.0
MsG0280009641.01.T01 AT2G18060 42.553 94 36 3 100 192 2 78 3.23e-16 77.8
MsG0280009641.01.T01 AT5G14000 29.677 155 99 4 14 165 7 154 3.40e-16 75.1
MsG0280009641.01.T01 AT5G14000 29.870 154 98 4 14 164 7 153 2.50e-15 73.9
MsG0280009641.01.T01 AT1G02220 37.209 129 71 5 24 149 6 127 2.28e-14 73.6
MsG0280009641.01.T01 AT1G01010 35.000 160 88 8 24 170 6 162 5.23e-14 72.4
MsG0280009641.01.T01 AT3G56530 30.882 136 88 2 23 156 54 185 5.32e-13 68.9
MsG0280009641.01.T01 AT3G10490 36.957 92 44 4 95 186 2 79 4.43e-12 66.2
MsG0280009641.01.T01 AT3G10490 36.957 92 44 4 95 186 2 79 4.43e-12 66.2

Find 48 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTATTATCATTTGATAAT+TGG 0.114896 2:+55724361 MsG0280009641.01.T01:CDS
CAACAAACATATATCAATTT+TGG 0.187147 2:+55724168 MsG0280009641.01.T01:CDS
TATACGACATGCAGGAAATT+TGG 0.191903 2:+55724010 MsG0280009641.01.T01:intron
GAGTCACTGGCTCTGGATTC+TGG 0.244802 2:+55723557 MsG0280009641.01.T01:CDS
GTTATTATCATTTGATAATT+GGG 0.315345 2:+55724362 MsG0280009641.01.T01:CDS
CATTAATTTGTTGAGGTTGA+TGG 0.315956 2:-55724296 None:intergenic
CCAGAGCCAGTGACTCTATT+TGG 0.333205 2:-55723550 None:intergenic
GATGATGATGTTCCACTTCC+TGG 0.336439 2:+55722602 MsG0280009641.01.T01:CDS
ATGCATCATCCAATCAGTTT+TGG 0.355638 2:-55723689 None:intergenic
TTGATAAGATCAATAGCAAT+AGG 0.382635 2:-55722692 None:intergenic
GCCAAAGAGGAAGAAAATAT+AGG 0.410785 2:+55723515 MsG0280009641.01.T01:CDS
TAGTAGAATGAATAGCAATA+TGG 0.412099 2:+55724131 MsG0280009641.01.T01:CDS
CCAAATAGAGTCACTGGCTC+TGG 0.412912 2:+55723550 MsG0280009641.01.T01:CDS
TTCATGAATGGTTTGACGCT+TGG 0.438624 2:-55724103 None:intergenic
ATATCTACAAATATGATCCT+TGG 0.441210 2:+55722723 MsG0280009641.01.T01:CDS
TCTGGATTCTGGAAAGCAAC+TGG 0.467422 2:+55723568 MsG0280009641.01.T01:CDS
TTTGATAATTGGGATGAGCT+TGG 0.467447 2:+55724372 MsG0280009641.01.T01:CDS
GACAAAGCAATATACTCAAA+TGG 0.469362 2:+55723595 MsG0280009641.01.T01:CDS
GGTTTGACGCTTGGTAGCTA+AGG 0.470329 2:-55724094 None:intergenic
TATCTACAAATATGATCCTT+GGG 0.485955 2:+55722724 MsG0280009641.01.T01:CDS
AGAATTACTATTTACAAACT+AGG 0.491310 2:-55724423 None:intergenic
GTAAAGGCACCAAAACTGAT+TGG 0.491861 2:+55723680 MsG0280009641.01.T01:CDS
GTTTACTATCGTGGTAGTGC+TGG 0.494944 2:+55723658 MsG0280009641.01.T01:CDS
AAATATACCAGGAGCAGAGA+AGG 0.498611 2:+55723477 MsG0280009641.01.T01:CDS
TAACCTTCCTTCTCTGCTCC+TGG 0.500000 2:-55723484 None:intergenic
CTGATTGTAGAATTATTGAC+TGG 0.519068 2:-55724225 None:intergenic
CCTCATTGTGATGATGCTCA+TGG 0.528975 2:-55724197 None:intergenic
GTAACAAGTTCTTCATCTGT+AGG 0.530457 2:-55722638 None:intergenic
ATATACTCAAATGGAGGAGA+AGG 0.533042 2:+55723604 MsG0280009641.01.T01:CDS
TGGAATCTGAATCCAGGAAG+TGG 0.538809 2:-55722614 None:intergenic
AAAACACTTGTTTACTATCG+TGG 0.541680 2:+55723649 MsG0280009641.01.T01:CDS
CAAGTTCTTCATCTGTAGGA+TGG 0.549129 2:-55722634 None:intergenic
TATCGTGGTAGTGCTGGTAA+AGG 0.553822 2:+55723664 MsG0280009641.01.T01:CDS
GTTTGACGCTTGGTAGCTAA+GGG 0.553957 2:-55724093 None:intergenic
GTTAGACCAAATAGAGTCAC+TGG 0.561770 2:+55723544 MsG0280009641.01.T01:CDS
GTAGGATGGAATCTGAATCC+AGG 0.567210 2:-55722620 None:intergenic
GACATACTTGGAAGATCCCA+AGG 0.569277 2:-55722740 None:intergenic
ATTCTACAATCAGTGATCAA+AGG 0.581662 2:+55724235 MsG0280009641.01.T01:CDS
GGAGAAGGAAATGATTGTGT+TGG 0.583944 2:+55723619 MsG0280009641.01.T01:CDS
ATCAGCATCATTCTTAGCAT+AGG 0.603706 2:-55723755 None:intergenic
AGAGAAGATGGGTATGAACG+AGG 0.606606 2:+55722547 None:intergenic
ATACCAGGAGCAGAGAAGGA+AGG 0.629648 2:+55723481 MsG0280009641.01.T01:CDS
TGTGTTACATTAATTTGTTG+AGG 0.634779 2:-55724303 None:intergenic
TTAAAAGAAATGTATCACAA+AGG 0.637410 2:+55724049 MsG0280009641.01.T01:CDS
AAAGCAATATACTCAAATGG+AGG 0.648134 2:+55723598 MsG0280009641.01.T01:CDS
TATGCAGAAGTAAATATACC+AGG 0.662988 2:+55723466 MsG0280009641.01.T01:intron
CCATGAGCATCATCACAATG+AGG 0.679725 2:+55724197 MsG0280009641.01.T01:CDS
TATGAACGAGGATTTCAACA+TGG 0.688452 2:+55722559 MsG0280009641.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAAAAAATAAATAAATA+GGG + Chr2:55722897-55722916 MsG0280009641.01.T01:intron 0.0%
!! ACAAAAAAAGAATAAAAAAA+AGG - Chr2:55722779-55722798 None:intergenic 10.0%
!! CTATTGTAAAAATAAGAATA+GGG + Chr2:55722871-55722890 MsG0280009641.01.T01:intron 15.0%
!! TATTGTAAAAATAAGAATAG+GGG + Chr2:55722872-55722891 MsG0280009641.01.T01:intron 15.0%
!! TCTATTGTAAAAATAAGAAT+AGG + Chr2:55722870-55722889 MsG0280009641.01.T01:intron 15.0%
!!! AGTTATTATCATTTGATAAT+TGG + Chr2:55724361-55724380 MsG0280009641.01.T01:CDS 15.0%
!!! GTTATTATCATTTGATAATT+GGG + Chr2:55724362-55724381 MsG0280009641.01.T01:CDS 15.0%
!!! TTATTTTTCCTTTTCATTAT+AGG + Chr2:55723413-55723432 MsG0280009641.01.T01:intron 15.0%
!! ACATTATAGCTTATATATAG+AGG + Chr2:55723216-55723235 MsG0280009641.01.T01:intron 20.0%
!! CTTGTGTTAATTAAATTAGA+TGG - Chr2:55722926-55722945 None:intergenic 20.0%
!! TATAGTTACCTATAATGAAA+AGG - Chr2:55723424-55723443 None:intergenic 20.0%
!! TGAAAAGGAAAAATAAAGAA+AGG - Chr2:55723409-55723428 None:intergenic 20.0%
!! TTAAAAGAAATGTATCACAA+AGG + Chr2:55724049-55724068 MsG0280009641.01.T01:CDS 20.0%
!!! CAACAAACATATATCAATTT+TGG + Chr2:55724168-55724187 MsG0280009641.01.T01:CDS 20.0%
!!! TAACACAATCTTCAAATTTT+TGG + Chr2:55724319-55724338 MsG0280009641.01.T01:CDS 20.0%
! ATAAATTAGAGAGACATACT+TGG - Chr2:55722755-55722774 None:intergenic 25.0%
! ATATCTACAAATATGATCCT+TGG + Chr2:55722723-55722742 MsG0280009641.01.T01:CDS 25.0%
! ATCATTAGAACAAGTTTAAG+AGG - Chr2:55723985-55724004 None:intergenic 25.0%
! ATTTGCACTATGTAAAAAAG+TGG - Chr2:55723376-55723395 None:intergenic 25.0%
! TAGTAGAATGAATAGCAATA+TGG + Chr2:55724131-55724150 MsG0280009641.01.T01:CDS 25.0%
! TATCTACAAATATGATCCTT+GGG + Chr2:55722724-55722743 MsG0280009641.01.T01:CDS 25.0%
! TTGATAAGATCAATAGCAAT+AGG - Chr2:55722695-55722714 None:intergenic 25.0%
! TTTAATTAACACAAGCTAGA+AGG + Chr2:55722931-55722950 MsG0280009641.01.T01:intron 25.0%
!!! AATGTTTGTTTTGACATCAA+TGG - Chr2:55723734-55723753 None:intergenic 25.0%
!!! ACTATTACTTTTGTAGTAGA+TGG - Chr2:55723195-55723214 None:intergenic 25.0%
!!! TGTGTTACATTAATTTGTTG+AGG - Chr2:55724306-55724325 None:intergenic 25.0%
AAAACACTTGTTTACTATCG+TGG + Chr2:55723649-55723668 MsG0280009641.01.T01:CDS 30.0%
AAAGCAATATACTCAAATGG+AGG + Chr2:55723598-55723617 MsG0280009641.01.T01:CDS 30.0%
ATAGATGGTTTGATCGATTA+TGG + Chr2:55722994-55723013 MsG0280009641.01.T01:intron 30.0%
ATTCTACAATCAGTGATCAA+AGG + Chr2:55724235-55724254 MsG0280009641.01.T01:CDS 30.0%
CTGATTGTAGAATTATTGAC+TGG - Chr2:55724228-55724247 None:intergenic 30.0%
CTTAGCTAGCAATATATTCA+AGG + Chr2:55723028-55723047 MsG0280009641.01.T01:intron 30.0%
GAACAAGTTTAAGAGGAAAA+AGG - Chr2:55723978-55723997 None:intergenic 30.0%
GACAAAGCAATATACTCAAA+TGG + Chr2:55723595-55723614 MsG0280009641.01.T01:CDS 30.0%
TATGCAGAAGTAAATATACC+AGG + Chr2:55723466-55723485 MsG0280009641.01.T01:intron 30.0%
TATTTGCATGCAGAAATAGA+TGG + Chr2:55722979-55722998 MsG0280009641.01.T01:intron 30.0%
TGTATCACAAAGGAAAAACA+TGG + Chr2:55724059-55724078 MsG0280009641.01.T01:CDS 30.0%
! TCCTATATTTTCTTCCTCTT+TGG - Chr2:55723519-55723538 None:intergenic 30.0%
! TCTACTACTCTTTTCATGAA+TGG - Chr2:55724118-55724137 None:intergenic 30.0%
!! CATTAATTTGTTGAGGTTGA+TGG - Chr2:55724299-55724318 None:intergenic 30.0%
ATATACTCAAATGGAGGAGA+AGG + Chr2:55723604-55723623 MsG0280009641.01.T01:CDS 35.0%
ATCAGCATCATTCTTAGCAT+AGG - Chr2:55723758-55723777 None:intergenic 35.0%
GCCAAAGAGGAAGAAAATAT+AGG + Chr2:55723515-55723534 MsG0280009641.01.T01:CDS 35.0%
GTAACAAGTTCTTCATCTGT+AGG - Chr2:55722641-55722660 None:intergenic 35.0%
TATACGACATGCAGGAAATT+TGG + Chr2:55724010-55724029 MsG0280009641.01.T01:intron 35.0%
TATGAACGAGGATTTCAACA+TGG + Chr2:55722559-55722578 MsG0280009641.01.T01:CDS 35.0%
! ATGCATCATCCAATCAGTTT+TGG - Chr2:55723692-55723711 None:intergenic 35.0%
! GATTTTTCTATACGACATGC+AGG + Chr2:55724002-55724021 MsG0280009641.01.T01:intron 35.0%
! TTTGATAATTGGGATGAGCT+TGG + Chr2:55724372-55724391 MsG0280009641.01.T01:CDS 35.0%
!! GTTTTGACATCAATGGTTGA+TGG - Chr2:55723727-55723746 None:intergenic 35.0%
!!! GGTTACTTTTTTTGCCAAAG+AGG + Chr2:55723502-55723521 MsG0280009641.01.T01:CDS 35.0%
AAATATACCAGGAGCAGAGA+AGG + Chr2:55723477-55723496 MsG0280009641.01.T01:CDS 40.0%
CAAGTTCTTCATCTGTAGGA+TGG - Chr2:55722637-55722656 None:intergenic 40.0%
GGAGAAGGAAATGATTGTGT+TGG + Chr2:55723619-55723638 MsG0280009641.01.T01:CDS 40.0%
GTTAGACCAAATAGAGTCAC+TGG + Chr2:55723544-55723563 MsG0280009641.01.T01:CDS 40.0%
TTCATGAATGGTTTGACGCT+TGG - Chr2:55724106-55724125 None:intergenic 40.0%
!! GTAAAGGCACCAAAACTGAT+TGG + Chr2:55723680-55723699 MsG0280009641.01.T01:CDS 40.0%
CCATGAGCATCATCACAATG+AGG + Chr2:55724197-55724216 MsG0280009641.01.T01:CDS 45.0%
GACATACTTGGAAGATCCCA+AGG - Chr2:55722743-55722762 None:intergenic 45.0%
GTAGGATGGAATCTGAATCC+AGG - Chr2:55722623-55722642 None:intergenic 45.0%
TGGAATCTGAATCCAGGAAG+TGG - Chr2:55722617-55722636 None:intergenic 45.0%
! CCTCATTGTGATGATGCTCA+TGG - Chr2:55724200-55724219 None:intergenic 45.0%
! GATGATGATGTTCCACTTCC+TGG + Chr2:55722602-55722621 MsG0280009641.01.T01:CDS 45.0%
! GTTTACTATCGTGGTAGTGC+TGG + Chr2:55723658-55723677 MsG0280009641.01.T01:CDS 45.0%
! GTTTGACGCTTGGTAGCTAA+GGG - Chr2:55724096-55724115 None:intergenic 45.0%
! TCTGGATTCTGGAAAGCAAC+TGG + Chr2:55723568-55723587 MsG0280009641.01.T01:CDS 45.0%
!! TATCGTGGTAGTGCTGGTAA+AGG + Chr2:55723664-55723683 MsG0280009641.01.T01:CDS 45.0%
!! AATTAAAGAAATATAATATT+CGG + Chr2:55723307-55723326 MsG0280009641.01.T01:intron 5.0%
!! ATAAAAAATTTGTAAAAATT+TGG - Chr2:55723821-55723840 None:intergenic 5.0%
!! GTAATAAAAAATAAATAAAT+AGG + Chr2:55722896-55722915 MsG0280009641.01.T01:intron 5.0%
ATACCAGGAGCAGAGAAGGA+AGG + Chr2:55723481-55723500 MsG0280009641.01.T01:CDS 50.0%
CCAGAGCCAGTGACTCTATT+TGG - Chr2:55723553-55723572 None:intergenic 50.0%
TAACCTTCCTTCTCTGCTCC+TGG - Chr2:55723487-55723506 None:intergenic 50.0%
! GGTTTGACGCTTGGTAGCTA+AGG - Chr2:55724097-55724116 None:intergenic 50.0%
!! CCAAATAGAGTCACTGGCTC+TGG + Chr2:55723550-55723569 MsG0280009641.01.T01:CDS 50.0%
!! GAGTCACTGGCTCTGGATTC+TGG + Chr2:55723557-55723576 MsG0280009641.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr2 gene 55722554 55724434 55722554 ID=MsG0280009641.01;Name=MsG0280009641.01
Chr2 mRNA 55722554 55724434 55722554 ID=MsG0280009641.01.T01;Parent=MsG0280009641.01;Name=MsG0280009641.01.T01;_AED=0.27;_eAED=0.27;_QI=0|0|0|1|1|1|3|0|310
Chr2 exon 55722554 55722755 55722554 ID=MsG0280009641.01.T01:exon:5978;Parent=MsG0280009641.01.T01
Chr2 exon 55723473 55723792 55723473 ID=MsG0280009641.01.T01:exon:5977;Parent=MsG0280009641.01.T01
Chr2 exon 55724024 55724434 55724024 ID=MsG0280009641.01.T01:exon:5976;Parent=MsG0280009641.01.T01
Chr2 CDS 55722554 55722755 55722554 ID=MsG0280009641.01.T01:cds;Parent=MsG0280009641.01.T01
Chr2 CDS 55723473 55723792 55723473 ID=MsG0280009641.01.T01:cds;Parent=MsG0280009641.01.T01
Chr2 CDS 55724024 55724434 55724024 ID=MsG0280009641.01.T01:cds;Parent=MsG0280009641.01.T01
Gene Sequence

>MsG0280009641.01.T01

ATGGGTATGAACGAGGATTTCAACATGGATAATGAATATGTCGCAGATGATGATGATGTTCCACTTCCTGGATTCAGATTCCATCCTACAGATGAAGAACTTGTTACTTTTTATCTTAGAAGAAAACTTGACAAGAAACCTATTGCTATTGATCTTATCAAACAAATTGATATCTACAAATATGATCCTTGGGATCTTCCAAAAGTAAATATACCAGGAGCAGAGAAGGAAGGTTACTTTTTTTGCCAAAGAGGAAGAAAATATAGGAACAGCGTTAGACCAAATAGAGTCACTGGCTCTGGATTCTGGAAAGCAACTGGAATAGACAAAGCAATATACTCAAATGGAGGAGAAGGAAATGATTGTGTTGGACTCAAAAAAACACTTGTTTACTATCGTGGTAGTGCTGGTAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGTCTTCCATCAACCATTGATGTCAAAACAAACATTTCCTATGCTAAGAATGATGCTGATTGTGCTCATGAAGCTGAAATTTGGACATTGTGTAGAATTTTTAAAAGAAATGTATCACAAAGGAAAAACATGGTAGATGTGAAACCCTTAGCTACCAAGCGTCAAACCATTCATGAAAAGAGTAGTAGAATGAATAGCAATATGGAGTTCAACACAAATCAACAAACATATATCAATTTTGGTACAAGCCATGAGCATCATCACAATGAGGATAAACCAGTCAATAATTCTACAATCAGTGATCAAAGGAATCAATTTCATGTAGATCAATTGAGCTCTTCAGTAGACCATCAACCTCAACAAATTAATGTAACACAATCTTCAAATTTTTGGATTAAGCAAGCTGCTAATGAGTTATTATCATTTGATAATTGGGATGAGCTTGGATCAGTTGTGAACTTTGTTTCACGTTCACCTAGTTTGTAA
Protein sequence

>MsG0280009641.01.T01

MGMNEDFNMDNEYVADDDDVPLPGFRFHPTDEELVTFYLRRKLDKKPIAIDLIKQIDIYKYDPWDLPKVNIPGAEKEGYFFCQRGRKYRNSVRPNRVTGSGFWKATGIDKAIYSNGGEGNDCVGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSTIDVKTNISYAKNDADCAHEAEIWTLCRIFKRNVSQRKNMVDVKPLATKRQTIHEKSSRMNSNMEFNTNQQTYINFGTSHEHHHNEDKPVNNSTISDQRNQFHVDQLSSSVDHQPQQINVTQSSNFWIKQAANELLSFDNWDELGSVVNFVSRSPSL*