AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007272.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007272.01.T01 MTR_2g023930 79.832 357 13 3 1 313 1 342 0.0 530
MsG0280007272.01.T01 MTR_4g132430 51.779 253 81 11 68 313 80 298 1.08e-61 204
MsG0280007272.01.T01 MTR_2g088000 39.777 269 128 5 63 313 134 386 7.28e-51 178
MsG0280007272.01.T01 MTR_4g132430 53.763 186 59 8 133 313 1 164 4.47e-49 167
MsG0280007272.01.T01 MTR_3g053330 45.411 207 93 8 114 313 95 288 8.08e-42 151
MsG0280007272.01.T01 MTR_4g049760 37.308 260 129 6 74 313 82 327 1.71e-40 149
MsG0280007272.01.T01 MTR_6g038890 50.909 165 53 7 144 306 80 218 2.31e-38 135
MsG0280007272.01.T01 MTR_7g110720 41.667 204 69 6 113 313 97 253 3.59e-38 140
MsG0280007272.01.T01 MTR_5g044695 90.476 63 6 0 244 306 45 107 2.29e-36 127
MsG0280007272.01.T01 MTR_4g049790 35.409 257 136 7 74 313 106 349 1.81e-34 132
MsG0280007272.01.T01 MTR_4g047580 31.559 263 139 7 74 313 74 318 3.11e-34 131
MsG0280007272.01.T01 MTR_7g110720 75.362 69 17 0 245 313 158 226 8.33e-32 123
MsG0280007272.01.T01 MTR_2g045360 35.714 224 91 7 113 320 69 255 1.80e-30 119
MsG0280007272.01.T01 MTR_7g009730 36.150 213 115 6 119 313 47 256 6.29e-30 120
MsG0280007272.01.T01 MTR_4g094412 37.500 216 114 6 113 313 62 271 2.28e-28 114
MsG0280007272.01.T01 MTR_4g094412 37.500 216 114 6 113 313 71 280 2.63e-28 114
MsG0280007272.01.T01 MTR_4g107970 33.473 239 127 8 113 325 71 303 2.52e-27 112
MsG0280007272.01.T01 MTR_4g107970 35.514 214 107 7 126 313 7 215 3.45e-27 111
MsG0280007272.01.T01 MTR_4g007060 40.541 74 44 0 251 324 137 210 2.74e-16 77.4
MsG0280007272.01.T01 MTR_7g011820 34.091 132 81 3 186 313 317 446 1.00e-15 78.2
MsG0280007272.01.T01 MTR_5g094430 58.182 55 22 1 259 313 235 288 1.66e-15 77.4
MsG0280007272.01.T01 MTR_5g094430 58.182 55 22 1 259 313 213 266 1.97e-15 77.0
MsG0280007272.01.T01 MTR_3g031220 57.143 56 23 1 258 313 347 401 2.07e-15 77.0
MsG0280007272.01.T01 MTR_5g094430 58.182 55 22 1 259 313 347 400 2.72e-15 77.0
MsG0280007272.01.T01 MTR_3g056100 58.182 55 22 1 259 313 398 451 3.22e-15 76.6
MsG0280007272.01.T01 MTR_3g056100 58.182 55 22 1 259 313 385 438 3.38e-15 76.6
MsG0280007272.01.T01 MTR_3g056100 58.182 55 22 1 259 313 254 307 3.74e-15 76.3
MsG0280007272.01.T01 MTR_3g056100 58.182 55 22 1 259 313 241 294 4.26e-15 75.9
MsG0280007272.01.T01 MTR_3g009470 51.562 64 30 1 250 313 469 531 8.38e-15 75.5
MsG0280007272.01.T01 MTR_5g097490 52.941 68 26 2 251 313 222 288 1.01e-14 74.7
MsG0280007272.01.T01 MTR_4g007060 42.857 63 36 0 251 313 137 199 1.66e-14 73.6
MsG0280007272.01.T01 MTR_4g007060 42.857 63 36 0 251 313 103 165 1.73e-14 72.8
MsG0280007272.01.T01 MTR_5g074400 55.357 56 24 1 258 313 402 456 2.18e-14 74.3
MsG0280007272.01.T01 MTR_4g130900 50.000 66 32 1 260 325 343 407 3.61e-14 73.6
MsG0280007272.01.T01 MTR_4g013260 53.571 56 25 1 258 313 318 372 3.72e-14 73.2
MsG0280007272.01.T01 MTR_7g080020 56.364 55 23 1 259 313 476 529 5.58e-14 73.2
MsG0280007272.01.T01 MTR_7g080000 56.364 55 23 1 259 313 415 468 8.32e-14 72.4
MsG0280007272.01.T01 MTR_4g082580 46.269 67 35 1 258 324 260 325 1.45e-13 71.2
MsG0280007272.01.T01 MTR_7g071120 52.459 61 28 1 253 313 301 360 1.82e-13 71.2
MsG0280007272.01.T01 MTR_5g042920 51.786 56 26 1 258 313 302 356 2.15e-13 70.9
MsG0280007272.01.T01 MTR_3g106060 49.091 55 28 0 259 313 121 175 2.19e-13 70.1
MsG0280007272.01.T01 MTR_1g013760 52.830 53 25 0 261 313 125 177 2.67e-13 69.7
MsG0280007272.01.T01 MTR_1g015140 41.026 78 44 2 236 313 63 138 3.52e-13 67.0
MsG0280007272.01.T01 MTR_3g104750 49.091 55 27 1 259 313 87 140 4.51e-13 66.6
MsG0280007272.01.T01 MTR_1g013790 54.000 50 23 0 264 313 89 138 5.15e-13 68.2
MsG0280007272.01.T01 MTR_7g109800 51.852 54 25 1 260 313 129 181 7.70e-13 68.2
MsG0280007272.01.T01 MTR_8g096730 47.170 53 27 1 261 313 55 106 4.95e-12 63.2
MsG0280007272.01.T01 MTR_5g044695 42.735 117 43 6 161 275 8 102 6.39e-12 61.6
MsG0280007272.01.T01 MTR_4g122530 50.000 54 26 1 260 313 192 244 6.90e-12 66.2
MsG0280007272.01.T01 MTR_2g083870 57.447 47 20 0 267 313 71 117 7.73e-12 65.1
MsG0280007272.01.T01 MTR_2g033820 50.000 54 26 1 260 313 187 239 1.28e-11 65.5
MsG0280007272.01.T01 MTR_2g105060 49.180 61 26 2 258 313 146 206 1.30e-11 65.1
MsG0280007272.01.T01 MTR_7g100510 36.667 90 48 2 239 320 324 412 1.36e-11 65.5
MsG0280007272.01.T01 MTR_8g087000 68.421 38 12 0 276 313 77 114 1.43e-11 63.9
MsG0280007272.01.T01 MTR_7g028415 50.000 56 27 1 265 320 82 136 1.57e-11 62.4
MsG0280007272.01.T01 MTR_7g028710 50.000 56 27 1 265 320 82 136 1.57e-11 62.4
MsG0280007272.01.T01 MTR_8g087000 68.421 38 12 0 276 313 76 113 1.64e-11 63.9
MsG0280007272.01.T01 MTR_2g105060 49.180 61 26 2 258 313 71 131 1.76e-11 63.5
MsG0280007272.01.T01 MTR_1g086790 47.458 59 30 1 260 318 142 199 2.63e-11 63.9
MsG0280007272.01.T01 MTR_0117s0040 45.833 72 36 1 242 313 43 111 3.63e-11 62.8
MsG0280007272.01.T01 MTR_1g077780 46.296 54 28 1 260 313 46 98 4.82e-11 60.5
MsG0280007272.01.T01 MTR_5g043880 46.552 58 30 1 256 313 104 160 6.38e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007272.01.T01 AT1G62300 43.799 379 117 16 1 313 1 349 4.33e-73 236
MsG0280007272.01.T01 AT4G04450 48.000 300 94 13 48 313 58 329 2.73e-66 217
MsG0280007272.01.T01 AT4G22070 49.466 281 97 11 61 313 71 334 4.16e-63 209
MsG0280007272.01.T01 AT4G22070 49.466 281 97 11 61 313 71 334 4.16e-63 209
MsG0280007272.01.T01 AT4G22070 49.466 281 97 11 61 313 71 334 4.16e-63 209
MsG0280007272.01.T01 AT4G22070 49.466 281 97 11 61 313 71 334 4.16e-63 209
MsG0280007272.01.T01 AT4G04450 49.049 263 76 11 81 313 1 235 2.66e-61 202
MsG0280007272.01.T01 AT4G01720 41.667 204 90 6 113 313 99 276 7.21e-37 138
MsG0280007272.01.T01 AT5G15130 32.314 229 127 6 113 313 36 264 6.80e-28 114
MsG0280007272.01.T01 AT1G68150 34.842 221 101 9 115 325 96 283 2.00e-27 110
MsG0280007272.01.T01 AT5G15130 32.432 222 122 6 120 313 1 222 8.26e-27 110
MsG0280007272.01.T01 AT1G18860 31.349 252 138 6 108 325 37 287 2.93e-26 109
MsG0280007272.01.T01 AT1G69810 30.396 227 144 4 113 325 26 252 4.41e-23 99.0
MsG0280007272.01.T01 AT4G31800 30.986 213 108 6 114 324 47 222 7.87e-22 92.8
MsG0280007272.01.T01 AT1G69810 58.209 67 28 0 259 325 128 194 2.11e-20 90.5
MsG0280007272.01.T01 AT4G31800 31.683 202 101 5 114 313 47 213 7.50e-20 88.6
MsG0280007272.01.T01 AT1G80840 29.146 199 86 5 119 313 36 183 1.01e-15 77.0
MsG0280007272.01.T01 AT2G38470 55.357 56 24 1 258 313 344 398 1.46e-15 77.8
MsG0280007272.01.T01 AT4G26640 58.182 55 22 1 259 313 188 241 2.33e-15 76.6
MsG0280007272.01.T01 AT4G26640 58.182 55 22 1 259 313 188 241 2.33e-15 76.6
MsG0280007272.01.T01 AT4G26640 58.182 55 22 1 259 313 188 241 2.33e-15 76.6
MsG0280007272.01.T01 AT4G26640 58.182 55 22 1 259 313 188 241 2.33e-15 76.6
MsG0280007272.01.T01 AT4G26640 58.182 55 22 1 259 313 324 377 2.72e-15 77.0
MsG0280007272.01.T01 AT4G26640 58.182 55 22 1 259 313 292 345 2.95e-15 76.6
MsG0280007272.01.T01 AT4G26640 58.182 55 22 1 259 313 364 417 3.45e-15 76.6
MsG0280007272.01.T01 AT5G56270 49.231 65 32 1 249 313 460 523 1.79e-14 74.7
MsG0280007272.01.T01 AT5G07100 47.059 68 35 1 250 317 115 181 2.77e-14 71.2
MsG0280007272.01.T01 AT5G07100 47.059 68 35 1 250 317 115 181 2.77e-14 71.2
MsG0280007272.01.T01 AT5G07100 47.059 68 35 1 250 317 115 181 2.77e-14 71.2
MsG0280007272.01.T01 AT5G07100 47.059 68 35 1 250 317 115 181 2.77e-14 71.2
MsG0280007272.01.T01 AT5G07100 44.000 75 41 1 250 324 208 281 5.48e-14 72.0
MsG0280007272.01.T01 AT5G26170 51.923 52 24 1 262 313 99 149 7.34e-14 69.3
MsG0280007272.01.T01 AT1G13960 50.820 61 29 1 253 313 386 445 1.09e-13 72.0
MsG0280007272.01.T01 AT1G13960 48.485 66 33 1 253 318 233 297 1.30e-13 71.2
MsG0280007272.01.T01 AT4G30935 57.407 54 22 1 260 313 315 367 1.41e-13 71.6
MsG0280007272.01.T01 AT2G03340 49.180 61 30 1 253 313 392 451 3.48e-13 70.5
MsG0280007272.01.T01 AT3G01080 47.541 61 31 1 253 313 283 342 4.76e-13 69.7
MsG0280007272.01.T01 AT3G01080 47.541 61 31 1 253 313 321 380 5.69e-13 69.7
MsG0280007272.01.T01 AT4G31800 50.820 61 25 2 258 313 88 148 5.72e-13 68.2
MsG0280007272.01.T01 AT2G46130 47.761 67 33 2 256 322 10 74 8.10e-13 64.3
MsG0280007272.01.T01 AT2G47260 48.387 62 31 1 252 313 150 210 8.99e-13 68.6
MsG0280007272.01.T01 AT3G01970 41.463 82 47 1 232 313 21 101 1.14e-12 65.1
MsG0280007272.01.T01 AT4G26440 55.556 54 23 1 260 313 356 408 1.21e-12 68.9
MsG0280007272.01.T01 AT5G13080 51.852 54 25 1 263 316 54 106 2.03e-12 64.3
MsG0280007272.01.T01 AT5G49520 51.852 54 25 1 260 313 205 257 2.34e-12 67.8
MsG0280007272.01.T01 AT2G25000 43.333 60 34 0 254 313 81 140 4.01e-12 65.5
MsG0280007272.01.T01 AT2G25000 43.333 60 34 0 254 313 81 140 4.01e-12 65.5
MsG0280007272.01.T01 AT2G25000 40.000 65 39 0 249 313 98 162 4.05e-12 65.9
MsG0280007272.01.T01 AT2G04880 46.552 58 30 1 256 313 263 319 4.14e-12 67.0
MsG0280007272.01.T01 AT2G04880 46.552 58 30 1 256 313 287 343 4.76e-12 67.0
MsG0280007272.01.T01 AT2G25000 43.333 60 34 0 254 313 124 183 5.53e-12 65.5
MsG0280007272.01.T01 AT1G29860 37.624 101 57 3 217 317 82 176 1.38e-11 64.7
MsG0280007272.01.T01 AT3G58710 57.447 47 20 0 267 313 62 108 1.90e-11 63.9
MsG0280007272.01.T01 AT3G58710 57.447 47 20 0 267 313 61 107 1.90e-11 63.9
MsG0280007272.01.T01 AT1G29280 55.319 47 21 0 267 313 65 111 2.23e-11 63.5
MsG0280007272.01.T01 AT2G30250 50.909 55 26 1 259 313 311 364 2.53e-11 64.7
MsG0280007272.01.T01 AT4G18170 50.000 58 28 1 260 317 156 212 2.99e-11 63.9
MsG0280007272.01.T01 AT4G23550 58.140 43 18 0 271 313 135 177 4.32e-11 63.5
MsG0280007272.01.T01 AT1G64000 47.458 59 30 1 258 316 96 153 5.14e-11 61.6
MsG0280007272.01.T01 AT5G41570 49.091 55 27 1 262 316 84 137 8.22e-11 60.8

Find 59 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCCTTGTGTTTCTGATTC+TGG 0.066609 2:+12888291 None:intergenic
TTGACAGGAAATCCTAAAAT+AGG 0.296916 2:+12889568 None:intergenic
TGAGAGTGAGATATTGGAAT+TGG 0.324537 2:+12889646 None:intergenic
AAAGGGTGAGAGTGAGATAT+TGG 0.336997 2:+12889640 None:intergenic
GGATGCCAATGGAGGAAATA+TGG 0.352069 2:-12888041 MsG0280007272.01.T01:CDS
CGCCGTTGGTGTTACGGGTA+AGG 0.353888 2:+12889545 None:intergenic
GTCTTCGCCGTTGGTGTTAC+GGG 0.361102 2:+12889540 None:intergenic
CTTGAGATAGGTACTACTAA+TGG 0.365396 2:-12888423 MsG0280007272.01.T01:CDS
CGTCTTCGCCGTTGGTGTTA+CGG 0.365794 2:+12889539 None:intergenic
AGGAATAGCAATGGTAAAAC+TGG 0.382516 2:-12888327 MsG0280007272.01.T01:CDS
CTGCAAAGCCGTGTAATTAC+CGG 0.385725 2:+12888914 None:intergenic
AAACTCACTTGTTTGCGAAC+TGG 0.388176 2:+12887951 None:intergenic
TTTGTCCATATTTCCTCCAT+TGG 0.390389 2:+12888036 None:intergenic
TACTACAGATTGATCACTTC+CGG 0.396054 2:+12889209 None:intergenic
CCAAGACAATTTCTTGAGAT+AGG 0.405230 2:-12888435 MsG0280007272.01.T01:CDS
CTATAGTATGCTCGAGGACA+TGG 0.465899 2:+12887996 None:intergenic
GGCGGTGACCGGAAAATAAC+CGG 0.466327 2:-12889517 MsG0280007272.01.T01:CDS
GAGATGCTAAGTCATGTTAC+CGG 0.472299 2:-12888933 MsG0280007272.01.T01:CDS
CAGAAAGAAATCGACTTCAC+CGG 0.486928 2:+12889498 None:intergenic
AGCATACTATAGATGCACTA+TGG 0.487105 2:-12887985 MsG0280007272.01.T01:CDS
ACGGCGAAGACGGCGGTGAC+CGG 0.490027 2:-12889528 MsG0280007272.01.T01:CDS
TATATTATATGGACAAAGCA+TGG 0.490606 2:-12889699 None:intergenic
GTGTTACGGGTAAGGTTGAC+AGG 0.491562 2:+12889553 None:intergenic
ATTTGCTTGATCTGCAACAT+TGG 0.493278 2:+12888233 None:intergenic
TGCTAGATCAGAAGCTTCAA+TGG 0.495447 2:-12888172 MsG0280007272.01.T01:intron
CAGAATCAGAAACACAAGGC+TGG 0.504762 2:-12888290 MsG0280007272.01.T01:CDS
AATAGGAAACATTCTATCGT+TGG 0.514918 2:+12889585 None:intergenic
AGAATCAGAAACACAAGGCT+GGG 0.517077 2:-12888289 MsG0280007272.01.T01:CDS
CCATTGCTATTCCTCATCTG+AGG 0.520104 2:+12888336 None:intergenic
ATATTATATGGACAAAGCAT+GGG 0.526634 2:-12889698 None:intergenic
GATCAATCTGTAGTAGATGA+TGG 0.527093 2:-12889201 MsG0280007272.01.T01:CDS
AATTGCAAGTGGAGCTTCAA+CGG 0.528483 2:-12888983 MsG0280007272.01.T01:CDS
GTCACCGCCGTCTTCGCCGT+TGG 0.533790 2:+12889531 None:intergenic
ATAGCAATGGTAAAACTGGT+AGG 0.540414 2:-12888323 MsG0280007272.01.T01:CDS
CGTAACACCAACGGCGAAGA+CGG 0.544973 2:-12889538 MsG0280007272.01.T01:CDS
CCAAGGTGTTGGTGGAGCAA+TGG 0.549924 2:-12888460 MsG0280007272.01.T01:CDS
GAATCACCACACTGAAAATG+AGG 0.553361 2:-12888865 MsG0280007272.01.T01:intron
CCATTGCTCCACCAACACCT+TGG 0.560146 2:+12888460 None:intergenic
CCTATCTCAAGAAATTGTCT+TGG 0.566117 2:+12888435 None:intergenic
TCAGCTTGCACAATTGCAAG+TGG 0.569056 2:-12888994 MsG0280007272.01.T01:intron
TCATGTTACCGGTAATTACA+CGG 0.577854 2:-12888922 MsG0280007272.01.T01:CDS
TAGCAATGGTAAAACTGGTA+GGG 0.595770 2:-12888322 MsG0280007272.01.T01:CDS
TCGTTGGTATAAGTAGATGA+TGG 0.603216 2:+12889601 None:intergenic
AACCTTACCCGTAACACCAA+CGG 0.603945 2:-12889547 MsG0280007272.01.T01:CDS
AATGAGAAAAGCTCGTGTCT+CGG 0.604308 2:-12888199 MsG0280007272.01.T01:CDS
GGCTTTGCAGATGCAACTTG+TGG 0.608912 2:-12888901 MsG0280007272.01.T01:CDS
GGATAATTGCAGATAAGTGA+TGG 0.611432 2:-12888062 MsG0280007272.01.T01:intron
GGTTTACAACTTGCAAACAC+CGG 0.613072 2:-12889228 MsG0280007272.01.T01:CDS
GATCAAACACACCTCAGATG+AGG 0.626860 2:-12888347 MsG0280007272.01.T01:CDS
TATAGATGCACTATGGCAGT+CGG 0.632166 2:-12887978 MsG0280007272.01.T01:CDS
GAATCAGAAACACAAGGCTG+GGG 0.640268 2:-12888288 MsG0280007272.01.T01:CDS
TAAGTGATGGATGCCAATGG+AGG 0.670782 2:-12888049 MsG0280007272.01.T01:CDS
AACACCAACGGCGAAGACGG+CGG 0.671264 2:-12889535 MsG0280007272.01.T01:CDS
GTGCATCTATAGTATGCTCG+AGG 0.675667 2:+12887990 None:intergenic
CCTCAGATGAGGAATAGCAA+TGG 0.676716 2:-12888336 MsG0280007272.01.T01:CDS
TATTATATGGACAAAGCATG+GGG 0.678619 2:-12889697 None:intergenic
TAAACGCGCTAAGACTACTG+AGG 0.707106 2:-12889158 MsG0280007272.01.T01:CDS
AGATAAGTGATGGATGCCAA+TGG 0.716557 2:-12888052 MsG0280007272.01.T01:CDS
AGTCCAGAATCAGAAACACA+AGG 0.719780 2:-12888294 MsG0280007272.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAATATTGTTAAATTC+AGG - Chr2:12889097-12889116 MsG0280007272.01.T01:intron 10.0%
!! TTAAATATGAGAAATTAATA+AGG + Chr2:12888259-12888278 None:intergenic 10.0%
!! AATTAAATCACAATTGATTA+AGG - Chr2:12889478-12889497 MsG0280007272.01.T01:intron 15.0%
!! GATAGAAAGAAATTAAAAAA+AGG + Chr2:12888286-12888305 None:intergenic 15.0%
!!! TTTTTTCAAATATTATAGAC+TGG - Chr2:12888359-12888378 MsG0280007272.01.T01:CDS 15.0%
!! AGTTTATATATCATTTCATC+CGG + Chr2:12888581-12888600 None:intergenic 20.0%
!! TAAATCCAATATCATCAAAA+AGG - Chr2:12888175-12888194 MsG0280007272.01.T01:CDS 20.0%
!! TATGGAATTCAAATCTTAAA+TGG - Chr2:12888863-12888882 MsG0280007272.01.T01:intron 20.0%
! ATTAACATGGATATTAGAAG+TGG + Chr2:12888228-12888247 None:intergenic 25.0%
! TGACTTTGTAAACTCAAATA+TGG - Chr2:12888845-12888864 MsG0280007272.01.T01:intron 25.0%
! TGATATTGGATTTAACATGT+TGG + Chr2:12888169-12888188 None:intergenic 25.0%
! TTTATTAACATGTTACCATC+TGG + Chr2:12889080-12889099 None:intergenic 25.0%
!! ATGCAACTAGTAATTTTATG+TGG - Chr2:12888549-12888568 MsG0280007272.01.T01:intron 25.0%
!! GATAGAATGTTTCCTATTTT+AGG - Chr2:12888028-12888047 MsG0280007272.01.T01:CDS 25.0%
!! TAATTTTATGTGGTCTTTAC+CGG - Chr2:12888559-12888578 MsG0280007272.01.T01:intron 25.0%
!! TTTCTAACTGAATTTTGTGA+TGG - Chr2:12889525-12889544 MsG0280007272.01.T01:CDS 25.0%
!!! AATATTTTCTGAGACTTGTT+TGG + Chr2:12889347-12889366 None:intergenic 25.0%
!!! AATCTCCTTTTTGATGATAT+TGG + Chr2:12888183-12888202 None:intergenic 25.0%
AATAGGAAACATTCTATCGT+TGG + Chr2:12888026-12888045 None:intergenic 30.0%
ACCATCTGGCATATAATATA+AGG + Chr2:12889066-12889085 None:intergenic 30.0%
CCATCTGGCATATAATATAA+GGG + Chr2:12889065-12889084 None:intergenic 30.0%
GAGGAAATATGGACAAAAAA+TGG - Chr2:12889578-12889597 MsG0280007272.01.T01:CDS 30.0%
TAAGGAAGCTTACATTAACA+TGG + Chr2:12888241-12888260 None:intergenic 30.0%
TATGGACAAAAAATGGCTAA+AGG - Chr2:12889585-12889604 MsG0280007272.01.T01:CDS 30.0%
TTCATGACATGTCAATTTAG+TGG - Chr2:12888814-12888833 MsG0280007272.01.T01:intron 30.0%
TTGACAGGAAATCCTAAAAT+AGG + Chr2:12888043-12888062 None:intergenic 30.0%
! TAATTACCTCATTTTCAGTG+TGG + Chr2:12888752-12888771 None:intergenic 30.0%
!!! GCTGTTTTGAAGGTAAAAAA+GGG + Chr2:12887988-12888007 None:intergenic 30.0%
AAAACTGAGGAGAAAAACCA+AGG - Chr2:12889131-12889150 MsG0280007272.01.T01:CDS 35.0%
ACATGGATATTAGAAGTGGA+AGG + Chr2:12888224-12888243 None:intergenic 35.0%
AGCATACTATAGATGCACTA+TGG - Chr2:12889623-12889642 MsG0280007272.01.T01:CDS 35.0%
AGGAATAGCAATGGTAAAAC+TGG - Chr2:12889281-12889300 MsG0280007272.01.T01:intron 35.0%
AGTATACTAACATCTCATGC+AGG + Chr2:12888939-12888958 None:intergenic 35.0%
ATAGCAATGGTAAAACTGGT+AGG - Chr2:12889285-12889304 MsG0280007272.01.T01:intron 35.0%
ATTTGCTTGATCTGCAACAT+TGG + Chr2:12889378-12889397 None:intergenic 35.0%
CCAAGACAATTTCTTGAGAT+AGG - Chr2:12889173-12889192 MsG0280007272.01.T01:CDS 35.0%
CCCTTATATTATATGCCAGA+TGG - Chr2:12889062-12889081 MsG0280007272.01.T01:intron 35.0%
CCTATCTCAAGAAATTGTCT+TGG + Chr2:12889176-12889195 None:intergenic 35.0%
CTTGAGATAGGTACTACTAA+TGG - Chr2:12889185-12889204 MsG0280007272.01.T01:CDS 35.0%
GATCAATCTGTAGTAGATGA+TGG - Chr2:12888407-12888426 MsG0280007272.01.T01:CDS 35.0%
GGATAATTGCAGATAAGTGA+TGG - Chr2:12889546-12889565 MsG0280007272.01.T01:CDS 35.0%
GGTTGTTAATGCAAAAACTG+AGG - Chr2:12889118-12889137 MsG0280007272.01.T01:intron 35.0%
TACTACAGATTGATCACTTC+CGG + Chr2:12888402-12888421 None:intergenic 35.0%
TAGCAATGGTAAAACTGGTA+GGG - Chr2:12889286-12889305 MsG0280007272.01.T01:intron 35.0%
TCATGTTACCGGTAATTACA+CGG - Chr2:12888686-12888705 MsG0280007272.01.T01:intron 35.0%
TCGTTGGTATAAGTAGATGA+TGG + Chr2:12888010-12888029 None:intergenic 35.0%
TGAGAGTGAGATATTGGAAT+TGG + Chr2:12887965-12887984 None:intergenic 35.0%
TTGTGTTCATTTGAAGGTGA+TGG + Chr2:12888146-12888165 None:intergenic 35.0%
TTTGTCCATATTTCCTCCAT+TGG + Chr2:12889575-12889594 None:intergenic 35.0%
! TGTTGGTTGTGTTCATTTGA+AGG + Chr2:12888152-12888171 None:intergenic 35.0%
!!! GGCTGTTTTGAAGGTAAAAA+AGG + Chr2:12887989-12888008 None:intergenic 35.0%
AAACTCACTTGTTTGCGAAC+TGG + Chr2:12889660-12889679 None:intergenic 40.0%
AAAGGGTGAGAGTGAGATAT+TGG + Chr2:12887971-12887990 None:intergenic 40.0%
AATGAGAAAAGCTCGTGTCT+CGG - Chr2:12889409-12889428 MsG0280007272.01.T01:intron 40.0%
AATTGCAAGTGGAGCTTCAA+CGG - Chr2:12888625-12888644 MsG0280007272.01.T01:intron 40.0%
AGAATCAGAAACACAAGGCT+GGG - Chr2:12889319-12889338 MsG0280007272.01.T01:intron 40.0%
AGTCCAGAATCAGAAACACA+AGG - Chr2:12889314-12889333 MsG0280007272.01.T01:intron 40.0%
GAATCACCACACTGAAAATG+AGG - Chr2:12888743-12888762 MsG0280007272.01.T01:intron 40.0%
GAGATGCTAAGTCATGTTAC+CGG - Chr2:12888675-12888694 MsG0280007272.01.T01:intron 40.0%
GGTTTACAACTTGCAAACAC+CGG - Chr2:12888380-12888399 MsG0280007272.01.T01:CDS 40.0%
TATAGATGCACTATGGCAGT+CGG - Chr2:12889630-12889649 MsG0280007272.01.T01:CDS 40.0%
TGCTAGATCAGAAGCTTCAA+TGG - Chr2:12889436-12889455 MsG0280007272.01.T01:intron 40.0%
! AGAAGTGGAAGGCTTTTCAT+CGG + Chr2:12888213-12888232 None:intergenic 40.0%
! CAGAAAGAAATCGACTTCAC+CGG + Chr2:12888113-12888132 None:intergenic 40.0%
!! AGATAAGTGATGGATGCCAA+TGG - Chr2:12889556-12889575 MsG0280007272.01.T01:CDS 40.0%
!! GTAGATGATGGCTGTTTTGA+AGG + Chr2:12887998-12888017 None:intergenic 40.0%
AACCTTACCCGTAACACCAA+CGG - Chr2:12888061-12888080 MsG0280007272.01.T01:intron 45.0%
CAGAATCAGAAACACAAGGC+TGG - Chr2:12889318-12889337 MsG0280007272.01.T01:intron 45.0%
CCTCAGATGAGGAATAGCAA+TGG - Chr2:12889272-12889291 MsG0280007272.01.T01:intron 45.0%
CTATAGTATGCTCGAGGACA+TGG + Chr2:12889615-12889634 None:intergenic 45.0%
CTGCAAAGCCGTGTAATTAC+CGG + Chr2:12888697-12888716 None:intergenic 45.0%
GAATCAGAAACACAAGGCTG+GGG - Chr2:12889320-12889339 MsG0280007272.01.T01:intron 45.0%
GAGGAGAAAAACCAAGGTGT+TGG - Chr2:12889137-12889156 MsG0280007272.01.T01:CDS 45.0%
GATCAAACACACCTCAGATG+AGG - Chr2:12889261-12889280 MsG0280007272.01.T01:intron 45.0%
GGATGCCAATGGAGGAAATA+TGG - Chr2:12889567-12889586 MsG0280007272.01.T01:CDS 45.0%
GTGCATCTATAGTATGCTCG+AGG + Chr2:12889621-12889640 None:intergenic 45.0%
TAAACGCGCTAAGACTACTG+AGG - Chr2:12888450-12888469 MsG0280007272.01.T01:CDS 45.0%
TCAGCTTGCACAATTGCAAG+TGG - Chr2:12888614-12888633 MsG0280007272.01.T01:intron 45.0%
! CAGCCTTGTGTTTCTGATTC+TGG + Chr2:12889320-12889339 None:intergenic 45.0%
! CCATTGCTATTCCTCATCTG+AGG + Chr2:12889275-12889294 None:intergenic 45.0%
!! CGACTTCACCGGTTATTTTC+CGG + Chr2:12888102-12888121 None:intergenic 45.0%
!! GAGAAAAACCAAGGTGTTGG+TGG - Chr2:12889140-12889159 MsG0280007272.01.T01:CDS 45.0%
!! TAAGTGATGGATGCCAATGG+AGG - Chr2:12889559-12889578 MsG0280007272.01.T01:CDS 45.0%
GGCTTTGCAGATGCAACTTG+TGG - Chr2:12888707-12888726 MsG0280007272.01.T01:intron 50.0%
GTGTTACGGGTAAGGTTGAC+AGG + Chr2:12888058-12888077 None:intergenic 50.0%
CCATTGCTCCACCAACACCT+TGG + Chr2:12889151-12889170 None:intergenic 55.0%
CGTAACACCAACGGCGAAGA+CGG - Chr2:12888070-12888089 MsG0280007272.01.T01:intron 55.0%
GGCGGTGACCGGAAAATAAC+CGG - Chr2:12888091-12888110 MsG0280007272.01.T01:intron 55.0%
!! CCAAGGTGTTGGTGGAGCAA+TGG - Chr2:12889148-12889167 MsG0280007272.01.T01:CDS 55.0%
!! CGTCTTCGCCGTTGGTGTTA+CGG + Chr2:12888072-12888091 None:intergenic 55.0%
!! GTCTTCGCCGTTGGTGTTAC+GGG + Chr2:12888071-12888090 None:intergenic 55.0%
AACACCAACGGCGAAGACGG+CGG - Chr2:12888073-12888092 MsG0280007272.01.T01:intron 60.0%
!! CGCCGTTGGTGTTACGGGTA+AGG + Chr2:12888066-12888085 None:intergenic 60.0%
ACGGCGAAGACGGCGGTGAC+CGG - Chr2:12888080-12888099 MsG0280007272.01.T01:intron 70.0%
GTCACCGCCGTCTTCGCCGT+TGG + Chr2:12888080-12888099 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 12887917 12889713 12887917 ID=MsG0280007272.01;Name=MsG0280007272.01
Chr2 mRNA 12887917 12889713 12887917 ID=MsG0280007272.01.T01;Parent=MsG0280007272.01;Name=MsG0280007272.01.T01;_AED=0.34;_eAED=0.36;_QI=0|0.5|0.4|1|1|1|5|0|325
Chr2 exon 12889513 12889713 12889513 ID=MsG0280007272.01.T01:exon:585;Parent=MsG0280007272.01.T01
Chr2 exon 12889119 12889253 12889119 ID=MsG0280007272.01.T01:exon:584;Parent=MsG0280007272.01.T01
Chr2 exon 12888866 12889012 12888866 ID=MsG0280007272.01.T01:exon:583;Parent=MsG0280007272.01.T01
Chr2 exon 12888173 12888511 12888173 ID=MsG0280007272.01.T01:exon:582;Parent=MsG0280007272.01.T01
Chr2 exon 12887917 12888072 12887917 ID=MsG0280007272.01.T01:exon:581;Parent=MsG0280007272.01.T01
Chr2 CDS 12889513 12889713 12889513 ID=MsG0280007272.01.T01:cds;Parent=MsG0280007272.01.T01
Chr2 CDS 12889119 12889253 12889119 ID=MsG0280007272.01.T01:cds;Parent=MsG0280007272.01.T01
Chr2 CDS 12888866 12889012 12888866 ID=MsG0280007272.01.T01:cds;Parent=MsG0280007272.01.T01
Chr2 CDS 12888173 12888511 12888173 ID=MsG0280007272.01.T01:cds;Parent=MsG0280007272.01.T01
Chr2 CDS 12887917 12888072 12887917 ID=MsG0280007272.01.T01:cds;Parent=MsG0280007272.01.T01
Gene Sequence

>MsG0280007272.01.T01

ATGGACAAAGCATGGGGTCTAGCTCTTGATACTTCTTCATCTTCTCCAATTCCAATATCTCACTCTCACCCTTTTTTACCTTCAAAACAGCCATCATCTACTTATACCAACGATAGAATGTTTCCTATTTTAGGATTTCCTGTCAACCTTACCCGTAACACCAACGGCGAAGACGGCGGTGACCGGAAAATAACCGGTGAAACTGGTTTACAACTTGCAAACACCGGAAGTGATCAATCTGTAGTAGATGATGGAGTTTCATCTGATGCTGAAATAAACGCGCTAAGACTACTGAGGTACGTAATTCAATTTAGTGCATGTTTGATATCACGATTTCTTGCACAATTGCAAGTGGAGCTTCAACGGATGAATTCAGAGAACAAAAAGCTGAAAGAGATGCTAAGTCATGTTACCGGTAATTACACGGCTTTGCAGATGCAACTTGTGGCATTAATGCAAAAGAATCACCACACTGAAAATGAGGTTGTTAATGCAAAAACTGAGGAGAAAAACCAAGGTGTTGGTGGAGCAATGGTACCAAGACAATTTCTTGAGATAGGTACTACTAATGGAACAGCAGAAGTTGAAGATCAAGTATCAAACTCATCATCTGATGAAAGAACAAGATCAAACACACCTCAGATGAGGAATAGCAATGGTAAAACTGGTAGGGAAGACAGTCCAGAATCAGAAACACAAGGCTGGGGACCAAACAAGTCTCAGAAAATATTGAACTCTTCCAATGTTGCAGATCAAGCAAATACAGAAGCTACAATGAGAAAAGCTCGTGTCTCGGTTCGTGCTAGATCAGAAGCTTCAATGATAAGTGATGGATGCCAATGGAGGAAATATGGACAAAAAATGGCTAAAGGAAATCCATGTCCTCGAGCATACTATAGATGCACTATGGCAGTCGGTTGTCCAGTTCGCAAACAAGTGAGTTTTCTTTTTACTAAAGAAATATCGTGTCTAATATGA

Protein sequence

>MsG0280007272.01.T01

MDKAWGLALDTSSSSPIPISHSHPFLPSKQPSSTYTNDRMFPILGFPVNLTRNTNGEDGGDRKITGETGLQLANTGSDQSVVDDGVSSDAEINALRLLRYVIQFSACLISRFLAQLQVELQRMNSENKKLKEMLSHVTGNYTALQMQLVALMQKNHHTENEVVNAKTEEKNQGVGGAMVPRQFLEIGTTNGTAEVEDQVSNSSSDERTRSNTPQMRNSNGKTGREDSPESETQGWGPNKSQKILNSSNVADQANTEATMRKARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVSFLFTKEISCLI*