AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010039.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010039.01.T01 MTR_2g076960 99.065 107 1 0 68 174 157 263 3.73e-75 226
MsG0280010039.01.T01 MTR_8g086270 83.000 100 16 1 68 166 156 255 2.00e-55 176
MsG0280010039.01.T01 MTR_2g091225 77.885 104 22 1 68 170 133 236 8.03e-54 171
MsG0280010039.01.T01 MTR_2g091225 77.885 104 22 1 68 170 156 259 1.27e-53 171
MsG0280010039.01.T01 MTR_2g015980 82.292 96 16 1 68 162 153 248 1.83e-52 168
MsG0280010039.01.T01 MTR_5g044160 83.908 87 14 0 68 154 156 242 6.16e-50 162
MsG0280010039.01.T01 MTR_4g083060 71.028 107 31 0 68 174 156 262 1.09e-49 162
MsG0280010039.01.T01 MTR_5g064580 66.102 118 38 2 52 169 144 259 2.55e-47 155
MsG0280010039.01.T01 MTR_3g099380 73.196 97 26 0 68 164 159 255 9.87e-47 153
MsG0280010039.01.T01 MTR_3g100620 69.880 83 25 0 68 150 163 245 3.96e-37 129
MsG0280010039.01.T01 MTR_0137s0020 54.878 82 36 1 68 149 161 241 9.71e-24 94.0
MsG0280010039.01.T01 MTR_3g014060 53.659 82 37 1 68 149 161 241 4.92e-23 92.0
MsG0280010039.01.T01 MTR_3g099380 75.556 45 11 0 68 112 159 203 8.45e-18 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010039.01.T01 AT2G42590 46.522 230 59 7 1 166 26 255 4.01e-54 172
MsG0280010039.01.T01 AT2G42590 46.320 231 59 7 1 166 26 256 2.27e-53 171
MsG0280010039.01.T01 AT2G42590 45.763 236 63 7 1 171 26 261 2.31e-53 171
MsG0280010039.01.T01 AT1G26480 81.609 87 16 0 68 154 159 245 8.86e-49 159
MsG0280010039.01.T01 AT1G34760 68.519 108 26 2 68 174 154 254 3.32e-48 157
MsG0280010039.01.T01 AT1G34760 76.923 91 21 0 68 158 154 244 5.43e-48 156
MsG0280010039.01.T01 AT5G38480 45.887 231 60 10 1 166 23 253 2.61e-46 152
MsG0280010039.01.T01 AT1G78300 60.484 124 48 1 48 171 137 259 8.38e-46 151
MsG0280010039.01.T01 AT5G38480 47.085 223 53 10 1 158 23 245 1.40e-45 150
MsG0280010039.01.T01 AT5G38480 47.085 223 53 10 1 158 23 245 1.40e-45 150
MsG0280010039.01.T01 AT1G22300 79.518 83 17 0 75 157 161 243 4.46e-45 149
MsG0280010039.01.T01 AT1G22300 79.518 83 17 0 75 157 161 243 4.51e-45 149
MsG0280010039.01.T01 AT4G09000 42.797 236 70 6 1 171 29 264 1.20e-44 148
MsG0280010039.01.T01 AT1G22300 82.500 80 14 0 75 154 161 240 1.41e-44 147
MsG0280010039.01.T01 AT1G35160 60.317 126 48 2 48 172 143 267 3.47e-44 147
MsG0280010039.01.T01 AT3G02520 66.346 104 33 1 68 171 156 257 1.16e-42 143
MsG0280010039.01.T01 AT3G02520 66.346 104 33 1 68 171 156 257 1.16e-42 143
MsG0280010039.01.T01 AT1G35160 78.313 83 18 0 68 150 162 244 2.76e-42 143
MsG0280010039.01.T01 AT4G09000 78.313 83 18 0 68 150 161 243 4.90e-42 143
MsG0280010039.01.T01 AT5G16050 73.034 89 24 0 68 156 158 246 3.77e-41 139
MsG0280010039.01.T01 AT5G16050 73.034 89 24 0 68 156 158 246 3.77e-41 139
MsG0280010039.01.T01 AT5G65430 72.941 85 23 0 68 152 159 243 1.61e-40 137
MsG0280010039.01.T01 AT5G65430 72.093 86 24 0 68 153 159 244 2.79e-40 136
MsG0280010039.01.T01 AT5G10450 70.588 85 25 0 68 152 159 243 7.11e-40 135
MsG0280010039.01.T01 AT5G10450 69.767 86 26 0 68 153 159 244 1.25e-39 135
MsG0280010039.01.T01 AT5G65430 73.494 83 22 0 68 150 159 241 1.45e-39 135
MsG0280010039.01.T01 AT5G10450 71.084 83 24 0 68 150 159 241 5.42e-39 134
MsG0280010039.01.T01 AT5G10450 71.084 83 24 0 68 150 159 241 7.52e-39 134
MsG0280010039.01.T01 AT1G78220 48.810 84 43 0 65 148 152 235 1.01e-21 88.6

Find 51 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCGAGACAACCTTACTTTA+TGG 0.114948 2:+63363977 MsG0280010039.01.T01:CDS
CCTTGTAAGAATCTTCATTT+AGG 0.161442 2:-63363930 None:intergenic
GTTATATTTGGTCCAGTAAA+TGG 0.171453 2:-63364429 None:intergenic
AGTATCTTACCACCATCTTC+TGG 0.240375 2:-63364012 None:intergenic
ACCTTCAAGAATCCATTTAC+TGG 0.303576 2:+63364417 MsG0280010039.01.T01:three_prime_UTR
CACCATTGGTTTGTAATACA+TGG 0.342646 2:+63364362 MsG0280010039.01.T01:three_prime_UTR
CGGTCACGATGAAGATGAAT+TGG 0.358772 2:+63364140 MsG0280010039.01.T01:CDS
CTTGTAAGAATCTTCATTTA+GGG 0.359911 2:-63363929 None:intergenic
GGCTTGCTTTGCCAGGTGGC+AGG 0.380270 2:-63363878 None:intergenic
TTGAGTATTTGTTTGGATGT+AGG 0.411449 2:+63361099 MsG0280010039.01.T01:CDS
GTATCTTACCACCATCTTCT+GGG 0.419272 2:-63364011 None:intergenic
AAGTAATTTGAGTATTTGTT+TGG 0.433863 2:+63361092 MsG0280010039.01.T01:CDS
CATCAAAGGCTTGCTTTGCC+AGG 0.441295 2:-63363885 None:intergenic
ACAACAGTTGAAATCTTGTC+TGG 0.459555 2:-63363647 None:intergenic
ACATCCTATCCGATTGGGTC+TGG 0.460221 2:+63363729 MsG0280010039.01.T01:CDS
TGATGATGGTGTCTCAGAAC+TGG 0.464411 2:+63363903 MsG0280010039.01.T01:CDS
GTAGGAAAGGAGATTATTAT+CGG 0.471770 2:+63361117 MsG0280010039.01.T01:CDS
GGTGGAGGCAATGAAGAAAC+TGG 0.479492 2:+63360709 MsG0280010039.01.T01:CDS
TCCAGTAAATGGATTCTTGA+AGG 0.488869 2:-63364418 None:intergenic
TATCAGAAGTCCATAAAGTA+AGG 0.493501 2:-63363987 None:intergenic
CAGTTGAAATCTTGTCTGGC+TGG 0.494851 2:-63363643 None:intergenic
AATGAAGAAACTGGCGAAGA+TGG 0.495701 2:+63360718 MsG0280010039.01.T01:CDS
TCGCAACAGCTGCATGATCA+AGG 0.508740 2:-63363959 None:intergenic
TTCAGCAGGCTTCACTACAT+TGG 0.510080 2:-63364235 None:intergenic
CAAGATTTCAACTGTTGTGT+TGG 0.512229 2:+63363652 MsG0280010039.01.T01:CDS
TTCTCTGTTGGTACAAAATG+TGG 0.513775 2:+63360773 MsG0280010039.01.T01:CDS
ACCAACACATCCTATCCGAT+TGG 0.515197 2:+63363723 MsG0280010039.01.T01:CDS
TTGTGTAACAATAACACCAT+TGG 0.528240 2:+63364348 MsG0280010039.01.T01:three_prime_UTR
GAGCGAAACTTGTTCTCTGT+TGG 0.532989 2:+63360761 MsG0280010039.01.T01:CDS
TATTTGTTTGGATGTAGGAA+AGG 0.533021 2:+63361104 MsG0280010039.01.T01:CDS
CCAACACATCCTATCCGATT+GGG 0.541379 2:+63363724 MsG0280010039.01.T01:CDS
AATTTAGAGCCAGACCCAAT+CGG 0.545062 2:-63363738 None:intergenic
CTGTTGGTACAAAATGTGGT+GGG 0.547091 2:+63360777 MsG0280010039.01.T01:CDS
GGTCACGATGAAGATGAATT+GGG 0.552562 2:+63364141 MsG0280010039.01.T01:CDS
TTCTGAGACACCATCATCAA+AGG 0.562143 2:-63363899 None:intergenic
TCTGTTGGTACAAAATGTGG+TGG 0.566766 2:+63360776 MsG0280010039.01.T01:CDS
CCCAATCGGATAGGATGTGT+TGG 0.570799 2:-63363724 None:intergenic
CCTAAATGAAGATTCTTACA+AGG 0.576397 2:+63363930 MsG0280010039.01.T01:CDS
ATCCATGTATTACAAACCAA+TGG 0.580667 2:-63364364 None:intergenic
ACTTCTGATATCCCAGAAGA+TGG 0.590224 2:+63364000 MsG0280010039.01.T01:CDS
GCAAAGCAAGCCTTTGATGA+TGG 0.597901 2:+63363889 MsG0280010039.01.T01:CDS
CAAAGGCTTGCTTTGCCAGG+TGG 0.598428 2:-63363882 None:intergenic
TTGTAATTCATTCTCAGCAG+TGG 0.600849 2:-63363701 None:intergenic
TGTTGGTACAAAATGTGGTG+GGG 0.604404 2:+63360778 MsG0280010039.01.T01:CDS
AGAGCCAGACCCAATCGGAT+AGG 0.608618 2:-63363733 None:intergenic
AGATAATGAATTCACCTGAA+AGG 0.617561 2:+63363779 MsG0280010039.01.T01:CDS
GATGGATGTTGAACTAAGTG+TGG 0.633294 2:+63360736 MsG0280010039.01.T01:CDS
TGATAACTATAACATTGATG+TGG 0.662452 2:+63364186 MsG0280010039.01.T01:three_prime_UTR
GTGGTGTGCAGAAATGGTGG+AGG 0.663377 2:+63360694 None:intergenic
TCTGATATCCCAGAAGATGG+TGG 0.672723 2:+63364003 MsG0280010039.01.T01:CDS
ATGGAAAGTGCAACTAAGAG+CGG 0.673290 2:+63364120 MsG0280010039.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAAAAAAAAAAATGTTA+TGG - Chr2:63361926-63361945 None:intergenic 10.0%
!!! TAATTTTTAAGGTAAAATAT+TGG - Chr2:63363026-63363045 None:intergenic 10.0%
!! AAAAAAAAATGTTATGGTAT+TGG - Chr2:63361920-63361939 None:intergenic 15.0%
!! AAAAATGTATAAGTAAAACT+TGG + Chr2:63362076-63362095 MsG0280010039.01.T01:intron 15.0%
!! TTGAAATATATTGAAGAATA+AGG - Chr2:63363585-63363604 None:intergenic 15.0%
!!! AATTTGAAACAATTTGTAAA+AGG - Chr2:63361889-63361908 None:intergenic 15.0%
!!! ATAATAATATTGTCATTTCA+TGG - Chr2:63362172-63362191 None:intergenic 15.0%
!!! TTATTTGTTGTATACAATTA+AGG + Chr2:63362468-63362487 MsG0280010039.01.T01:intron 15.0%
!!! TTTTTTTTTTTGTTTAGATC+TGG + Chr2:63361931-63361950 MsG0280010039.01.T01:intron 15.0%
!! AAGTAATTTGAGTATTTGTT+TGG + Chr2:63361092-63361111 MsG0280010039.01.T01:CDS 20.0%
!! ACTTATTTAAATTCATCTAC+TGG - Chr2:63361422-63361441 None:intergenic 20.0%
!! ATAATCAAATGAAACATGAA+CGG - Chr2:63362452-63362471 None:intergenic 20.0%
!! ATATTTCAACTTAGTATTAG+TGG + Chr2:63363596-63363615 MsG0280010039.01.T01:intron 20.0%
!! ATTTGTATCATAAGATTAGA+TGG + Chr2:63361606-63361625 MsG0280010039.01.T01:intron 20.0%
!! GAACTATAATGATGATAAAA+TGG - Chr2:63362802-63362821 None:intergenic 20.0%
!! TAACTTATGAAAATAGTGTA+TGG - Chr2:63361326-63361345 None:intergenic 20.0%
!! TGATAGAGAGATAATTTATA+GGG + Chr2:63362706-63362725 MsG0280010039.01.T01:intron 20.0%
!! TGCTAAAAGATAAACTATTT+AGG + Chr2:63362344-63362363 MsG0280010039.01.T01:intron 20.0%
!!! ACTATTTTCATAAGTTATCT+TGG + Chr2:63361329-63361348 MsG0280010039.01.T01:intron 20.0%
!!! ATAGAATTTATCATTTTGGT+AGG + Chr2:63363434-63363453 MsG0280010039.01.T01:intron 20.0%
!!! ATCTATGTTTTTTCACTTAA+AGG + Chr2:63362013-63362032 MsG0280010039.01.T01:intron 20.0%
!!! CTTGATAGAATTTATCATTT+TGG + Chr2:63363430-63363449 MsG0280010039.01.T01:intron 20.0%
!!! CTTTTTTCTTATACATTAGT+GGG + Chr2:63361754-63361773 MsG0280010039.01.T01:intron 20.0%
!!! TATGAAAAGATAGTTGATAT+AGG + Chr2:63362551-63362570 MsG0280010039.01.T01:intron 20.0%
!!! TCAACTATCTTTTCATATTA+TGG - Chr2:63362548-63362567 None:intergenic 20.0%
!!! TTTGTTTTTGTGTTAGATTT+TGG + Chr2:63361062-63361081 MsG0280010039.01.T01:intron 20.0%
! AATGAATGTTAAGCGTATTA+AGG + Chr2:63360864-63360883 MsG0280010039.01.T01:intron 25.0%
! AATTACGCAATATTACGATT+TGG - Chr2:63363847-63363866 None:intergenic 25.0%
! ACGTATATAAGACACTAAAT+TGG - Chr2:63364048-63364067 None:intergenic 25.0%
! AGAAAACTTGAAAAATTTCC+AGG + Chr2:63363619-63363638 MsG0280010039.01.T01:intron 25.0%
! ATAAAATATTCGTACATAGC+AGG - Chr2:63361664-63361683 None:intergenic 25.0%
! CATCTTATAATAAAACACTG+TGG - Chr2:63360987-63361006 None:intergenic 25.0%
! CCACTAATGTATAAGAAAAA+AGG - Chr2:63361756-63361775 None:intergenic 25.0%
! CTTGTAAGAATCTTCATTTA+GGG - Chr2:63363932-63363951 None:intergenic 25.0%
! GTACTAGAGAGTTTATTAAA+GGG - Chr2:63361732-63361751 None:intergenic 25.0%
! GTGATAGAGAGATAATTTAT+AGG + Chr2:63362705-63362724 MsG0280010039.01.T01:intron 25.0%
! TCAAAACTTGACCAATATAA+TGG - Chr2:63362983-63363002 None:intergenic 25.0%
! TCCTAAAAGTTCCATTATAT+TGG + Chr2:63362969-63362988 MsG0280010039.01.T01:intron 25.0%
! TGATAACTATAACATTGATG+TGG + Chr2:63364186-63364205 MsG0280010039.01.T01:three_prime_UTR 25.0%
! TGTACTAGAGAGTTTATTAA+AGG - Chr2:63361733-63361752 None:intergenic 25.0%
! TTAATGCATAACTAAGTTAC+TGG - Chr2:63362195-63362214 None:intergenic 25.0%
! TTATAGAATTTGACAACTCT+GGG + Chr2:63362416-63362435 MsG0280010039.01.T01:intron 25.0%
!! ATTTTATGTCATGGCTTATT+GGG + Chr2:63361677-63361696 MsG0280010039.01.T01:intron 25.0%
!! GTAAAATATTGGCTAAAAGA+TGG - Chr2:63363015-63363034 None:intergenic 25.0%
!! TATTTTATGTCATGGCTTAT+TGG + Chr2:63361676-63361695 MsG0280010039.01.T01:intron 25.0%
!! TGTACGAATATTTTATGTCA+TGG + Chr2:63361668-63361687 MsG0280010039.01.T01:intron 25.0%
!! TTAGGCATAAGAAAGTATAA+GGG - Chr2:63361459-63361478 None:intergenic 25.0%
!! TTTCTAATTTTCCATTTCAG+AGG + Chr2:63364089-63364108 MsG0280010039.01.T01:intron 25.0%
!!! ACCAATATAATGGAACTTTT+AGG - Chr2:63362973-63362992 None:intergenic 25.0%
!!! ATATTGCGTAATTTGTTTTC+AGG + Chr2:63363854-63363873 MsG0280010039.01.T01:intron 25.0%
!!! CCTTTTTTCTTATACATTAG+TGG + Chr2:63361753-63361772 MsG0280010039.01.T01:intron 25.0%
!!! TATTGCGTAATTTGTTTTCA+GGG + Chr2:63363855-63363874 MsG0280010039.01.T01:intron 25.0%
AAAGAAAAAACATGAAAGCG+AGG - Chr2:63363213-63363232 None:intergenic 30.0%
AATACAATAAGCCGAGAAAT+TGG - Chr2:63362761-63362780 None:intergenic 30.0%
AATTGAATTGTGATGTCGTA+TGG - Chr2:63362047-63362066 None:intergenic 30.0%
ACAAGGATAGATGAACTTTA+TGG + Chr2:63361488-63361507 MsG0280010039.01.T01:intron 30.0%
ACCAGATTGAAATCTTACTT+AGG - Chr2:63363506-63363525 None:intergenic 30.0%
AGATAATGAATTCACCTGAA+AGG + Chr2:63363779-63363798 MsG0280010039.01.T01:CDS 30.0%
AGATTATTATCGGTATTTGG+CGG + Chr2:63361127-63361146 MsG0280010039.01.T01:intron 30.0%
AGGAGATTATTATCGGTATT+TGG + Chr2:63361124-63361143 MsG0280010039.01.T01:intron 30.0%
AGTGTCTTATATACGTTCTT+TGG + Chr2:63364052-63364071 MsG0280010039.01.T01:intron 30.0%
ATCCATGTATTACAAACCAA+TGG - Chr2:63364367-63364386 None:intergenic 30.0%
ATGTAAATTCGTTTACTGGT+GGG + Chr2:63362906-63362925 MsG0280010039.01.T01:intron 30.0%
CAGATTGAAATCTTACTTAG+GGG - Chr2:63363504-63363523 None:intergenic 30.0%
CCAGATTGAAATCTTACTTA+GGG - Chr2:63363505-63363524 None:intergenic 30.0%
CCTAAATGAAGATTCTTACA+AGG + Chr2:63363930-63363949 MsG0280010039.01.T01:CDS 30.0%
CCTTGTAAGAATCTTCATTT+AGG - Chr2:63363933-63363952 None:intergenic 30.0%
CTAGAAAAATGCATCTGATA+GGG + Chr2:63362669-63362688 MsG0280010039.01.T01:intron 30.0%
GTAGGAAAGGAGATTATTAT+CGG + Chr2:63361117-63361136 MsG0280010039.01.T01:CDS 30.0%
GTTATAGAATTTGACAACTC+TGG + Chr2:63362415-63362434 MsG0280010039.01.T01:intron 30.0%
TATCAGAAGTCCATAAAGTA+AGG - Chr2:63363990-63364009 None:intergenic 30.0%
TATTTGTTTGGATGTAGGAA+AGG + Chr2:63361104-63361123 MsG0280010039.01.T01:CDS 30.0%
TCATAATGTCATTGCAAATG+TGG - Chr2:63360920-63360939 None:intergenic 30.0%
TGATTCTCTGTGTCATATTA+TGG + Chr2:63362222-63362241 MsG0280010039.01.T01:intron 30.0%
TTAGATTAGCACCAAAACTA+TGG - Chr2:63361842-63361861 None:intergenic 30.0%
TTGAGTATTTGTTTGGATGT+AGG + Chr2:63361099-63361118 MsG0280010039.01.T01:CDS 30.0%
TTGGTATTGCATGAATACTT+TGG + Chr2:63362095-63362114 MsG0280010039.01.T01:intron 30.0%
TTGTGTAACAATAACACCAT+TGG + Chr2:63364348-63364367 MsG0280010039.01.T01:three_prime_UTR 30.0%
! GGCAAGAAGCATAAATATAA+AGG - Chr2:63361790-63361809 None:intergenic 30.0%
! GTGAGACTGAGTAATTTTTA+AGG - Chr2:63363037-63363056 None:intergenic 30.0%
! GTTAGGCATAAGAAAGTATA+AGG - Chr2:63361460-63361479 None:intergenic 30.0%
! TGGATTTATGTCCATAGTTT+TGG + Chr2:63361828-63361847 MsG0280010039.01.T01:intron 30.0%
! TTAAGCGTATTAAGGAGTAT+AGG + Chr2:63360872-63360891 MsG0280010039.01.T01:intron 30.0%
!! GAAAAAGTGTTGTCAAATAG+CGG + Chr2:63362366-63362385 MsG0280010039.01.T01:intron 30.0%
!!! TAGTTGCACTTTCCATTTTT+TGG - Chr2:63364116-63364135 None:intergenic 30.0%
AAAATGGTCACTAGTGCAAA+AGG - Chr2:63362786-63362805 None:intergenic 35.0%
ACAACAGTTGAAATCTTGTC+TGG - Chr2:63363650-63363669 None:intergenic 35.0%
ACCTTCAAGAATCCATTTAC+TGG + Chr2:63364417-63364436 MsG0280010039.01.T01:three_prime_UTR 35.0%
ATGAATTCACCTGAAAGGTA+CGG + Chr2:63363784-63363803 MsG0280010039.01.T01:intron 35.0%
ATTTATGCTTCTTGCCTTGT+TGG + Chr2:63361794-63361813 MsG0280010039.01.T01:intron 35.0%
CAAGATTTCAACTGTTGTGT+TGG + Chr2:63363652-63363671 MsG0280010039.01.T01:CDS 35.0%
CATGTAAATTCGTTTACTGG+TGG + Chr2:63362905-63362924 MsG0280010039.01.T01:intron 35.0%
CATTTCAGAGGACCAAAAAA+TGG + Chr2:63364101-63364120 MsG0280010039.01.T01:intron 35.0%
CCAATTTGGTACCAATTTCT+CGG + Chr2:63362747-63362766 MsG0280010039.01.T01:intron 35.0%
CCCTAAGTAAGATTTCAATC+TGG + Chr2:63363502-63363521 MsG0280010039.01.T01:intron 35.0%
CGAGAAATTGGTACCAAATT+GGG - Chr2:63362749-63362768 None:intergenic 35.0%
GAAGATGTTTGTTCCTAAGA+GGG - Chr2:63362123-63362142 None:intergenic 35.0%
GAAGTTGAAAAAAGTTCAGC+AGG - Chr2:63364252-63364271 None:intergenic 35.0%
GAGCAGAAAGAAGAATCAAA+AGG + Chr2:63360837-63360856 MsG0280010039.01.T01:intron 35.0%
GCTAGAAAAATGCATCTGAT+AGG + Chr2:63362668-63362687 MsG0280010039.01.T01:intron 35.0%
GGATCTTAATGGGGATAATA+AGG - Chr2:63361643-63361662 None:intergenic 35.0%
GTACATAGCAGGATCTTAAT+GGG - Chr2:63361653-63361672 None:intergenic 35.0%
TAATGACTGAATCTCTTCAC+AGG + Chr2:63361546-63361565 MsG0280010039.01.T01:intron 35.0%
TACATAGCAGGATCTTAATG+GGG - Chr2:63361652-63361671 None:intergenic 35.0%
TATACGTTCTTTGGTCTAAC+TGG + Chr2:63364061-63364080 MsG0280010039.01.T01:intron 35.0%
TATGACACAGAGAATCATGA+TGG - Chr2:63362219-63362238 None:intergenic 35.0%
TCGCATGTAAATTCGTTTAC+TGG + Chr2:63362902-63362921 MsG0280010039.01.T01:intron 35.0%
TGAAGATGTTTGTTCCTAAG+AGG - Chr2:63362124-63362143 None:intergenic 35.0%
TGTCACAAATCTTCCCAATT+TGG + Chr2:63362733-63362752 MsG0280010039.01.T01:intron 35.0%
TGTTATCCAAACATGACCTA+AGG - Chr2:63361263-63361282 None:intergenic 35.0%
TTAACCTGTTGTAGACGATT+TGG + Chr2:63362250-63362269 MsG0280010039.01.T01:intron 35.0%
TTCTCTGTGTCATATTATGG+AGG + Chr2:63362225-63362244 MsG0280010039.01.T01:intron 35.0%
TTCTCTGTTGGTACAAAATG+TGG + Chr2:63360773-63360792 MsG0280010039.01.T01:CDS 35.0%
TTGTAATTCATTCTCAGCAG+TGG - Chr2:63363704-63363723 None:intergenic 35.0%
! AACACTGAGCTCAATTTTCT+TGG - Chr2:63362616-63362635 None:intergenic 35.0%
! GAAAGTATAAGGGTCTCTAT+TGG - Chr2:63361449-63361468 None:intergenic 35.0%
! TATTAAGGAGTATAGGCAGA+AGG + Chr2:63360879-63360898 MsG0280010039.01.T01:intron 35.0%
! TCTGTCACTTAAAGCATATC+AGG + Chr2:63361186-63361205 MsG0280010039.01.T01:intron 35.0%
! TTTAAAACCTATGCCAACCA+AGG - Chr2:63363534-63363553 None:intergenic 35.0%
!! CACCATTGGTTTGTAATACA+TGG + Chr2:63364362-63364381 MsG0280010039.01.T01:three_prime_UTR 35.0%
!!! CATTTTTTGGTCCTCTGAAA+TGG - Chr2:63364103-63364122 None:intergenic 35.0%
AAATGAAACATGAACGGCCA+AGG - Chr2:63362446-63362465 None:intergenic 40.0%
AATGAAGAAACTGGCGAAGA+TGG + Chr2:63360718-63360737 MsG0280010039.01.T01:CDS 40.0%
ACTTCTGATATCCCAGAAGA+TGG + Chr2:63364000-63364019 MsG0280010039.01.T01:CDS 40.0%
AGTATCTTACCACCATCTTC+TGG - Chr2:63364015-63364034 None:intergenic 40.0%
AGTTTGCCTTAGGTCATGTT+TGG + Chr2:63361254-63361273 MsG0280010039.01.T01:intron 40.0%
CCAAAACAGTCTCACAACAA+GGG + Chr2:63361391-63361410 MsG0280010039.01.T01:intron 40.0%
CCAAATGAAGTTCTCCAACA+AGG - Chr2:63361811-63361830 None:intergenic 40.0%
CCGAGAAATTGGTACCAAAT+TGG - Chr2:63362750-63362769 None:intergenic 40.0%
CCTTGTTGGAGAACTTCATT+TGG + Chr2:63361808-63361827 MsG0280010039.01.T01:intron 40.0%
CGTACATAGCAGGATCTTAA+TGG - Chr2:63361654-63361673 None:intergenic 40.0%
CTGTGGATTCAGCATATTAG+TGG - Chr2:63360970-63360989 None:intergenic 40.0%
CTGTTGGTACAAAATGTGGT+GGG + Chr2:63360777-63360796 MsG0280010039.01.T01:CDS 40.0%
GAATTGTGATGTCGTATGGA+AGG - Chr2:63362043-63362062 None:intergenic 40.0%
GATGGATGTTGAACTAAGTG+TGG + Chr2:63360736-63360755 MsG0280010039.01.T01:CDS 40.0%
GCACAAGTACAGATGAACTT+GGG - Chr2:63363236-63363255 None:intergenic 40.0%
GGATTCAGCATATTAGTGGA+TGG - Chr2:63360966-63360985 None:intergenic 40.0%
GGTCACGATGAAGATGAATT+GGG + Chr2:63364141-63364160 MsG0280010039.01.T01:CDS 40.0%
GTATCTTACCACCATCTTCT+GGG - Chr2:63364014-63364033 None:intergenic 40.0%
GTGTCTGTTGAAAACCAGTT+GGG - Chr2:63363152-63363171 None:intergenic 40.0%
GTTTGTGTTAATGAGAACCG+AGG + Chr2:63363815-63363834 MsG0280010039.01.T01:intron 40.0%
TATTTGGCGGAATTCAAAGC+TGG + Chr2:63361140-63361159 MsG0280010039.01.T01:intron 40.0%
TCACAGGCTTGCAATATATC+AGG + Chr2:63361562-63361581 MsG0280010039.01.T01:intron 40.0%
TCAGTGCTAATTGTGAGTCA+TGG + Chr2:63363321-63363340 MsG0280010039.01.T01:intron 40.0%
TCCAAAACAGTCTCACAACA+AGG + Chr2:63361390-63361409 MsG0280010039.01.T01:intron 40.0%
TCGTAACATGAGTTTGCCTT+AGG + Chr2:63361244-63361263 MsG0280010039.01.T01:intron 40.0%
TCTGTACTTGTGCATTCTCA+TGG + Chr2:63363243-63363262 MsG0280010039.01.T01:intron 40.0%
TCTGTTGGTACAAAATGTGG+TGG + Chr2:63360776-63360795 MsG0280010039.01.T01:CDS 40.0%
TGCACAAGTACAGATGAACT+TGG - Chr2:63363237-63363256 None:intergenic 40.0%
TGCGAGACAACCTTACTTTA+TGG + Chr2:63363977-63363996 MsG0280010039.01.T01:CDS 40.0%
TGTCTGTTGAAAACCAGTTG+GGG - Chr2:63363151-63363170 None:intergenic 40.0%
TGTTGGTACAAAATGTGGTG+GGG + Chr2:63360778-63360797 MsG0280010039.01.T01:CDS 40.0%
TTTATGACCTTACAGCCACT+GGG + Chr2:63362870-63362889 MsG0280010039.01.T01:intron 40.0%
! AATTTAGAGCCAGACCCAAT+CGG - Chr2:63363741-63363760 None:intergenic 40.0%
! ATGGAAAGTGCAACTAAGAG+CGG + Chr2:63364120-63364139 MsG0280010039.01.T01:CDS 40.0%
! TGAATTCACCTGAAAGGTAC+GGG + Chr2:63363785-63363804 MsG0280010039.01.T01:intron 40.0%
! TTTTATGACCTTACAGCCAC+TGG + Chr2:63362869-63362888 MsG0280010039.01.T01:intron 40.0%
!! GCTGAAGTTCTGAAAACAGA+GGG + Chr2:63362642-63362661 MsG0280010039.01.T01:intron 40.0%
!! TGCTGAAGTTCTGAAAACAG+AGG + Chr2:63362641-63362660 MsG0280010039.01.T01:intron 40.0%
!! TTCTGAGACACCATCATCAA+AGG - Chr2:63363902-63363921 None:intergenic 40.0%
AAAACCTATGCCAACCAAGG+TGG - Chr2:63363531-63363550 None:intergenic 45.0%
AAGCTGGCGATGAAAAGAAG+AGG + Chr2:63361156-63361175 MsG0280010039.01.T01:intron 45.0%
ACCAACACATCCTATCCGAT+TGG + Chr2:63363723-63363742 MsG0280010039.01.T01:CDS 45.0%
ACCACAAATACCTCCTTGCA+TGG - Chr2:63362593-63362612 None:intergenic 45.0%
AGATTAAGCACCATGCAAGG+AGG + Chr2:63362580-63362599 MsG0280010039.01.T01:intron 45.0%
AGCAGATTAAGCACCATGCA+AGG + Chr2:63362577-63362596 MsG0280010039.01.T01:intron 45.0%
CAATCCTACGATCTAACTCG+CGG - Chr2:63362844-63362863 None:intergenic 45.0%
CAGTTGAAATCTTGTCTGGC+TGG - Chr2:63363646-63363665 None:intergenic 45.0%
CATTCTCATGGCATCTAGTG+GGG + Chr2:63363255-63363274 MsG0280010039.01.T01:intron 45.0%
CCAACACATCCTATCCGATT+GGG + Chr2:63363724-63363743 MsG0280010039.01.T01:CDS 45.0%
CGGTCACGATGAAGATGAAT+TGG + Chr2:63364140-63364159 MsG0280010039.01.T01:CDS 45.0%
GCAAAGCAAGCCTTTGATGA+TGG + Chr2:63363889-63363908 MsG0280010039.01.T01:CDS 45.0%
GCATTCTCATGGCATCTAGT+GGG + Chr2:63363254-63363273 MsG0280010039.01.T01:intron 45.0%
GCTTGCAAGATTGCTGAGAT+CGG + Chr2:63362932-63362951 MsG0280010039.01.T01:intron 45.0%
GGTGTCTGTTGAAAACCAGT+TGG - Chr2:63363153-63363172 None:intergenic 45.0%
TCATCTATCCTTGTCAGCAG+CGG - Chr2:63361482-63361501 None:intergenic 45.0%
TCTGATATCCCAGAAGATGG+TGG + Chr2:63364003-63364022 MsG0280010039.01.T01:CDS 45.0%
TGACTGCAATGAAGCAGTAG+AGG - Chr2:63363174-63363193 None:intergenic 45.0%
TGCATTCTCATGGCATCTAG+TGG + Chr2:63363253-63363272 MsG0280010039.01.T01:intron 45.0%
TGTTGAAAACCAGTTGGGGA+GGG - Chr2:63363147-63363166 None:intergenic 45.0%
TTCAGCAGGCTTCACTACAT+TGG - Chr2:63364238-63364257 None:intergenic 45.0%
TTTCAATCTGGTGACCACCT+TGG + Chr2:63363514-63363533 MsG0280010039.01.T01:intron 45.0%
! GAGCGAAACTTGTTCTCTGT+TGG + Chr2:63360761-63360780 MsG0280010039.01.T01:CDS 45.0%
! TAAGGAGTATAGGCAGAAGG+TGG + Chr2:63360882-63360901 MsG0280010039.01.T01:intron 45.0%
!! AAGTTCTGAAAACAGAGGGC+AGG + Chr2:63362646-63362665 MsG0280010039.01.T01:intron 45.0%
!! ACCATGCAAGGAGGTATTTG+TGG + Chr2:63362589-63362608 MsG0280010039.01.T01:intron 45.0%
!! CCCTTGTTGTGAGACTGTTT+TGG - Chr2:63361394-63361413 None:intergenic 45.0%
!! GAATACTTTGGTGCCCTCTT+AGG + Chr2:63362107-63362126 MsG0280010039.01.T01:intron 45.0%
!! TGATGATGGTGTCTCAGAAC+TGG + Chr2:63363903-63363922 MsG0280010039.01.T01:CDS 45.0%
AAATCTTGTCTGGCTGGACC+TGG - Chr2:63363640-63363659 None:intergenic 50.0%
AAGACCGCGAGTTAGATCGT+AGG + Chr2:63362837-63362856 MsG0280010039.01.T01:intron 50.0%
AATCTGGTGACCACCTTGGT+TGG + Chr2:63363518-63363537 MsG0280010039.01.T01:intron 50.0%
ACATCCTATCCGATTGGGTC+TGG + Chr2:63363729-63363748 MsG0280010039.01.T01:CDS 50.0%
ATAACGCCACAGCACTGTAC+CGG - Chr2:63362400-63362419 None:intergenic 50.0%
CATGAAAGCGAGGAGCTTGT+TGG - Chr2:63363203-63363222 None:intergenic 50.0%
CCCAATCGGATAGGATGTGT+TGG - Chr2:63363727-63363746 None:intergenic 50.0%
CGCGAGTTAGATCGTAGGAT+TGG + Chr2:63362842-63362861 MsG0280010039.01.T01:intron 50.0%
CTGATAGGGAGCAGTTTGTG+TGG + Chr2:63362683-63362702 MsG0280010039.01.T01:intron 50.0%
CTGGCGATGAAAAGAAGAGG+TGG + Chr2:63361159-63361178 MsG0280010039.01.T01:intron 50.0%
CTGTTGAAAACCAGTTGGGG+AGG - Chr2:63363148-63363167 None:intergenic 50.0%
GCGATGAAAAGAAGAGGTGG+CGG + Chr2:63361162-63361181 MsG0280010039.01.T01:intron 50.0%
GGTCTAGAAGAGCTTCATGG+AGG + Chr2:63360799-63360818 MsG0280010039.01.T01:intron 50.0%
GGTGGAGGCAATGAAGAAAC+TGG + Chr2:63360709-63360728 MsG0280010039.01.T01:CDS 50.0%
GTGGCCAAATCGTCTACAAC+AGG - Chr2:63362257-63362276 None:intergenic 50.0%
GTTCAAAGTCAGCTGTGCTC+TGG - Chr2:63362314-63362333 None:intergenic 50.0%
GTTGAAAACCAGTTGGGGAG+GGG - Chr2:63363146-63363165 None:intergenic 50.0%
TATCCTTGTCAGCAGCGGTT+AGG - Chr2:63361477-63361496 None:intergenic 50.0%
TCAAATAGCGGCTAATGCGC+CGG + Chr2:63362378-63362397 MsG0280010039.01.T01:intron 50.0%
TCAGGGGGTTAGGTGTCAAT+GGG + Chr2:63363298-63363317 MsG0280010039.01.T01:intron 50.0%
TCGCAACAGCTGCATGATCA+AGG - Chr2:63363962-63363981 None:intergenic 50.0%
TGACAACTCTGGGTTTGCCT+TGG + Chr2:63362426-63362445 MsG0280010039.01.T01:intron 50.0%
TGGGGTCTAGAAGAGCTTCA+TGG + Chr2:63360796-63360815 MsG0280010039.01.T01:intron 50.0%
TTGAAAACCAGTTGGGGAGG+GGG - Chr2:63363145-63363164 None:intergenic 50.0%
! CATCAAAGGCTTGCTTTGCC+AGG - Chr2:63363888-63363907 None:intergenic 50.0%
! CATTTTCGCCCGTACCTTTC+AGG - Chr2:63363796-63363815 None:intergenic 50.0%
! TTACGATTTGGCAGCAGCCT+CGG - Chr2:63363835-63363854 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGGG+AGG - Chr2:63363098-63363117 None:intergenic 55.0%
AGAGCCAGACCCAATCGGAT+AGG - Chr2:63363736-63363755 None:intergenic 55.0%
ATGCCTAACCGCTGCTGACA+AGG + Chr2:63361471-63361490 MsG0280010039.01.T01:intron 55.0%
ATGCGAGTTAGATCGCCCAG+TGG - Chr2:63362888-63362907 None:intergenic 55.0%
CATGGCATCTAGTGGGGTTG+CGG + Chr2:63363261-63363280 MsG0280010039.01.T01:intron 55.0%
GGAGTATAGGCAGAAGGTGG+AGG + Chr2:63360885-63360904 MsG0280010039.01.T01:intron 55.0%
GGGAGAGAGAGAGAGAGAGA+GGG - Chr2:63363101-63363120 None:intergenic 55.0%
GTATAGGCAGAAGGTGGAGG+CGG + Chr2:63360888-63360907 MsG0280010039.01.T01:intron 55.0%
GTCAGGGGGTTAGGTGTCAA+TGG + Chr2:63363297-63363316 MsG0280010039.01.T01:intron 55.0%
GTGACCACCTTGGTTGGCAT+AGG + Chr2:63363524-63363543 MsG0280010039.01.T01:intron 55.0%
TAGATCGCCCAGTGGCTGTA+AGG - Chr2:63362880-63362899 None:intergenic 55.0%
! CAAAGGCTTGCTTTGCCAGG+TGG - Chr2:63363885-63363904 None:intergenic 55.0%
AAAACCAGTTGGGGAGGGGG+AGG - Chr2:63363142-63363161 None:intergenic 60.0%
CTATAGCACCGCTGCAGCTG+CGG - Chr2:63362289-63362308 None:intergenic 60.0%
GCAGCTGCGGTTGACAACAG+TGG - Chr2:63362276-63362295 None:intergenic 60.0%
GCATCTAGTGGGGTTGCGGT+AGG + Chr2:63363265-63363284 MsG0280010039.01.T01:intron 60.0%
GGGGAGAGAGAGAGAGAGAG+AGG - Chr2:63363102-63363121 None:intergenic 60.0%
GGGTTGCGGTAGGTGGTAGT+GGG + Chr2:63363275-63363294 MsG0280010039.01.T01:intron 60.0%
GTTGTCAACCGCAGCTGCAG+CGG + Chr2:63362278-63362297 MsG0280010039.01.T01:intron 60.0%
TCTAGTGGGGTTGCGGTAGG+TGG + Chr2:63363268-63363287 MsG0280010039.01.T01:intron 60.0%
! AATGCGCCGGTACAGTGCTG+TGG + Chr2:63362391-63362410 MsG0280010039.01.T01:intron 60.0%
!! CGGTAGGTGGTAGTGGGTCA+GGG + Chr2:63363281-63363300 MsG0280010039.01.T01:intron 60.0%
!! GGTAGGTGGTAGTGGGTCAG+GGG + Chr2:63363282-63363301 MsG0280010039.01.T01:intron 60.0%
!! GTAGGTGGTAGTGGGTCAGG+GGG + Chr2:63363283-63363302 MsG0280010039.01.T01:intron 60.0%
!! TGGTAGTGGGTCAGGGGGTT+AGG + Chr2:63363288-63363307 MsG0280010039.01.T01:intron 60.0%
!! TGTTTTCAGGGCCTGCCACC+TGG + Chr2:63363867-63363886 MsG0280010039.01.T01:intron 60.0%
GGGGTTGCGGTAGGTGGTAG+TGG + Chr2:63363274-63363293 MsG0280010039.01.T01:intron 65.0%
! GGCTTGCTTTGCCAGGTGGC+AGG - Chr2:63363881-63363900 None:intergenic 65.0%
!! GCGGTAGGTGGTAGTGGGTC+AGG + Chr2:63363280-63363299 MsG0280010039.01.T01:intron 65.0%
ACCAGTTGGGGAGGGGGAGG+AGG - Chr2:63363139-63363158 None:intergenic 70.0%
AGGAGGGAGGGAGGGAGGGA+GGG - Chr2:63363122-63363141 None:intergenic 70.0%
CCAGTTGGGGAGGGGGAGGA+GGG - Chr2:63363138-63363157 None:intergenic 70.0%
TTGGGGAGGGGGAGGAGGGA+GGG - Chr2:63363134-63363153 None:intergenic 70.0%
CCCTCCTCCCCCTCCCCAAC+TGG + Chr2:63363135-63363154 MsG0280010039.01.T01:intron 75.0%
GAGGAGGGAGGGAGGGAGGG+AGG - Chr2:63363123-63363142 None:intergenic 75.0%
GGAGGGAGGGAGGGAGGGAG+GGG - Chr2:63363121-63363140 None:intergenic 75.0%
GGAGGGGGAGGAGGGAGGGA+GGG - Chr2:63363130-63363149 None:intergenic 75.0%
GGGGAGGAGGGAGGGAGGGA+GGG - Chr2:63363126-63363145 None:intergenic 75.0%
GTTGGGGAGGGGGAGGAGGG+AGG - Chr2:63363135-63363154 None:intergenic 75.0%
! GGGAGGGGGAGGAGGGAGGG+AGG - Chr2:63363131-63363150 None:intergenic 80.0%
! GGGGGAGGAGGGAGGGAGGG+AGG - Chr2:63363127-63363146 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr2 gene 63360707 63364439 63360707 ID=MsG0280010039.01;Name=MsG0280010039.01
Chr2 mRNA 63360707 63364439 63360707 ID=MsG0280010039.01.T01;Parent=MsG0280010039.01;Name=MsG0280010039.01.T01;_AED=0.44;_eAED=0.47;_QI=0|0.5|0.4|1|1|1|5|269|174
Chr2 exon 63360707 63360799 63360707 ID=MsG0280010039.01.T01:exon:34908;Parent=MsG0280010039.01.T01
Chr2 exon 63361078 63361138 63361078 ID=MsG0280010039.01.T01:exon:34909;Parent=MsG0280010039.01.T01
Chr2 exon 63363641 63363800 63363641 ID=MsG0280010039.01.T01:exon:34910;Parent=MsG0280010039.01.T01
Chr2 exon 63363876 63364024 63363876 ID=MsG0280010039.01.T01:exon:34911;Parent=MsG0280010039.01.T01
Chr2 exon 63364109 63364439 63364109 ID=MsG0280010039.01.T01:exon:34912;Parent=MsG0280010039.01.T01
Chr2 CDS 63360707 63360799 63360707 ID=MsG0280010039.01.T01:cds;Parent=MsG0280010039.01.T01
Chr2 CDS 63361078 63361138 63361078 ID=MsG0280010039.01.T01:cds;Parent=MsG0280010039.01.T01
Chr2 CDS 63363641 63363800 63363641 ID=MsG0280010039.01.T01:cds;Parent=MsG0280010039.01.T01
Chr2 CDS 63363876 63364024 63363876 ID=MsG0280010039.01.T01:cds;Parent=MsG0280010039.01.T01
Chr2 CDS 63364109 63364170 63364109 ID=MsG0280010039.01.T01:cds;Parent=MsG0280010039.01.T01
Chr2 three_prime_UTR 63364171 63364439 63364171 ID=MsG0280010039.01.T01:three_prime_utr;Parent=MsG0280010039.01.T01
Gene Sequence

>MsG0280010039.01.T01

ATGGTGGAGGCAATGAAGAAACTGGCGAAGATGGATGTTGAACTAAGTGTGGAAGAGCGAAACTTGTTCTCTGTTGGTACAAAATGTGGTGGGATTTTGGATTTTGAAAGTAATTTGAGTATTTGTTTGGATGTAGGAAAGGAGATTATTATCGGTCCAGCCAGACAAGATTTCAACTGTTGTGTTGGTTGTGATTATTTGCAGACAGCTTCTGCCACTGCTGAGAATGAATTACAACCAACACATCCTATCCGATTGGGTCTGGCTCTAAATTTCTCAGTGTTTTATTATGAGATAATGAATTCACCTGAAAGGGCCTGCCACCTGGCAAAGCAAGCCTTTGATGATGGTGTCTCAGAACTGGATACCCTAAATGAAGATTCTTACAAGGACAGTACCTTGATCATGCAGCTGTTGCGAGACAACCTTACTTTATGGACTTCTGATATCCCAGAAGATGGTGAGGACCAAAAAATGGAAAGTGCAACTAAGAGCGGTCACGATGAAGATGAATTGGGTCGCTAA
Protein sequence

>MsG0280010039.01.T01

MVEAMKKLAKMDVELSVEERNLFSVGTKCGGILDFESNLSICLDVGKEIIIGPARQDFNCCVGCDYLQTASATAENELQPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDDGVSELDTLNEDSYKDSTLIMQLLRDNLTLWTSDIPEDGEDQKMESATKSGHDEDELGR*