Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023009.01.T01 | PNY10347.1 | 92.143 | 140 | 11 | 0 | 15 | 154 | 87 | 226 | 3.31E-87 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023009.01.T01 | Q9SA18 | 72.857 | 140 | 38 | 0 | 15 | 154 | 764 | 903 | 3.93E-66 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023009.01.T01 | G7LH37 | 92.857 | 140 | 10 | 0 | 15 | 154 | 762 | 901 | 3.46e-81 | 266 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048878.01 | MsG0480023009.01 | 0.825385 | 4.825165e-54 | 4.391242e-51 |
| MsG0180000355.01 | MsG0480023009.01 | 0.810662 | 1.031079e-50 | 6.252614e-48 |
| MsG0180001118.01 | MsG0480023009.01 | 0.804879 | 1.747644e-49 | 9.115041e-47 |
| MsG0180003493.01 | MsG0480023009.01 | 0.808851 | 2.528186e-50 | 1.461221e-47 |
| MsG0180004605.01 | MsG0480023009.01 | -0.806307 | 8.765377e-50 | 4.741774e-47 |
| MsG0180004750.01 | MsG0480023009.01 | 0.802991 | 4.314574e-49 | 2.143347e-46 |
| MsG0180005334.01 | MsG0480023009.01 | 0.814777 | 1.296337e-51 | 8.777883e-49 |
| MsG0380011844.01 | MsG0480023009.01 | 0.802349 | 5.851922e-49 | 2.860187e-46 |
| MsG0480022340.01 | MsG0480023009.01 | -0.838059 | 3.600609e-57 | 4.767252e-54 |
| MsG0480022587.01 | MsG0480023009.01 | 0.826085 | 3.291137e-54 | 3.055530e-51 |
| MsG0480022670.01 | MsG0480023009.01 | 0.802449 | 5.580516e-49 | 2.734380e-46 |
| MsG0480023009.01 | MsG0480023162.01 | 0.811560 | 6.585150e-51 | 4.089447e-48 |
| MsG0480023009.01 | MsG0480023909.01 | 0.829818 | 4.159789e-55 | 4.305795e-52 |
| MsG0480023009.01 | MsG0580025362.01 | -0.822948 | 1.802367e-53 | 1.530573e-50 |
| MsG0480023009.01 | MsG0680032378.01 | 0.803993 | 2.673462e-49 | 1.362840e-46 |
| MsG0480023009.01 | MsG0780036396.01 | -0.823417 | 1.401161e-53 | 1.205591e-50 |
| MsG0480023009.01 | MsG0780041692.01 | 0.821789 | 3.349372e-53 | 2.752058e-50 |
| MsG0480023009.01 | MsG0880042131.01 | 0.809911 | 1.496955e-50 | 8.899805e-48 |
| MsG0480023009.01 | MsG0880044005.01 | 0.813111 | 3.020382e-51 | 1.954775e-48 |
| MsG0480023009.01 | MsG0880044731.01 | 0.813706 | 2.234545e-51 | 1.469933e-48 |
| MsG0480023009.01 | MsG0880046059.01 | 0.805767 | 1.138846e-49 | 6.076523e-47 |
| MsG0480023009.01 | MsG0880047324.01 | 0.802215 | 6.236122e-49 | 3.037372e-46 |
| MsG0380015435.01 | MsG0480023009.01 | 0.801134 | 1.038979e-48 | 4.924137e-46 |
| MsG0380016671.01 | MsG0480023009.01 | 0.829641 | 4.595118e-55 | 4.730969e-52 |
| MsG0380017785.01 | MsG0480023009.01 | 0.814551 | 1.454254e-51 | 9.788017e-49 |
| MsG0480018091.01 | MsG0480023009.01 | -0.812396 | 4.329314e-51 | 2.749737e-48 |
| MsG0280007193.01 | MsG0480023009.01 | -0.809564 | 1.778061e-50 | 1.047470e-47 |
| MsG0280007787.01 | MsG0480023009.01 | 0.809275 | 2.050412e-50 | 1.198652e-47 |
| MsG0280010039.01 | MsG0480023009.01 | 0.813574 | 2.389340e-51 | 1.566108e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023009.01.T01 | MTR_8g083210 | 92.857 | 140 | 10 | 0 | 15 | 154 | 762 | 901 | 8.78e-85 | 266 |
| MsG0480023009.01.T01 | MTR_8g083210 | 92.857 | 140 | 10 | 0 | 15 | 154 | 769 | 908 | 1.06e-84 | 266 |
| MsG0480023009.01.T01 | MTR_3g084500 | 83.571 | 140 | 23 | 0 | 15 | 154 | 539 | 678 | 2.42e-77 | 243 |
| MsG0480023009.01.T01 | MTR_3g084500 | 83.571 | 140 | 23 | 0 | 15 | 154 | 589 | 728 | 5.04e-77 | 243 |
| MsG0480023009.01.T01 | MTR_3g084500 | 83.571 | 140 | 23 | 0 | 15 | 154 | 759 | 898 | 4.21e-76 | 243 |
| MsG0480023009.01.T01 | MTR_3g079330 | 34.783 | 138 | 86 | 3 | 19 | 154 | 236 | 371 | 8.99e-19 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023009.01.T01 | AT1G31230 | 72.857 | 140 | 38 | 0 | 15 | 154 | 764 | 903 | 4.01e-67 | 219 |
| MsG0480023009.01.T01 | AT4G19710 | 72.143 | 140 | 39 | 0 | 15 | 154 | 769 | 908 | 2.48e-66 | 217 |
| MsG0480023009.01.T01 | AT5G21060 | 39.098 | 133 | 77 | 3 | 24 | 154 | 241 | 371 | 4.05e-23 | 94.0 |
| MsG0480023009.01.T01 | AT5G21060 | 39.098 | 133 | 77 | 3 | 24 | 154 | 243 | 373 | 4.09e-23 | 94.0 |
| MsG0480023009.01.T01 | AT5G21060 | 39.098 | 133 | 77 | 3 | 24 | 154 | 243 | 373 | 4.39e-23 | 94.0 |
| MsG0480023009.01.T01 | AT4G19710 | 58.824 | 68 | 28 | 0 | 15 | 82 | 769 | 836 | 1.70e-21 | 90.5 |
Find 52 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATTACAATGTCAATTT+TGG | 0.115631 | 4:-79647345 | None:intergenic |
| GCAAACTCCGGGTCAAATTT+TGG | 0.204913 | 4:+79647055 | None:intergenic |
| TAGCTTGTTTATCTTGTATA+CGG | 0.229519 | 4:-79646069 | MsG0480023009.01.T01:three_prime_UTR |
| GGAGGGGTTGTTGCAGGATA+TGG | 0.232776 | 4:+79645930 | None:intergenic |
| CTGTCTCCATTAATCTTGTT+TGG | 0.265081 | 4:-79646037 | MsG0480023009.01.T01:three_prime_UTR |
| CGACTCCCAAACAAGATTAA+TGG | 0.286022 | 4:+79646031 | None:intergenic |
| GTTCTTACCCGTAGTGGTTC+TGG | 0.302693 | 4:+79647200 | None:intergenic |
| TTACGACTTGCCTCATATCT+AGG | 0.335031 | 4:-79646206 | MsG0480023009.01.T01:exon |
| CATCCATTTGCACAATTGTC+GGG | 0.343333 | 4:-79646340 | MsG0480023009.01.T01:CDS |
| TGTCTCCATTAATCTTGTTT+GGG | 0.352484 | 4:-79646036 | MsG0480023009.01.T01:three_prime_UTR |
| ATAATTCTCGCAAGGGAATC+TGG | 0.369464 | 4:-79647266 | MsG0480023009.01.T01:CDS |
| TGTTCCTCTCTTGAGTTGTT+TGG | 0.396214 | 4:-79646134 | MsG0480023009.01.T01:three_prime_UTR |
| ATAGTTCGCGGGCCAGGAGC+TGG | 0.412636 | 4:-79646265 | MsG0480023009.01.T01:CDS |
| TAATTTAGACTGTCTCGAAT+AGG | 0.417800 | 4:-79645980 | MsG0480023009.01.T01:three_prime_UTR |
| TCTTGTTTCTTTGCAAACTC+CGG | 0.422683 | 4:+79647043 | None:intergenic |
| CAAGAAGATGCTGACAATGC+TGG | 0.432766 | 4:-79647025 | MsG0480023009.01.T01:CDS |
| GTGACTTGAGCACCAGCTCC+TGG | 0.443485 | 4:+79646253 | None:intergenic |
| AAGAAGATGCTGACAATGCT+GGG | 0.463024 | 4:-79647024 | MsG0480023009.01.T01:CDS |
| TCTGGCACTAGACTTTCAAT+TGG | 0.463231 | 4:+79647218 | None:intergenic |
| CCTCTCTTGAGTTGTTTGGT+AGG | 0.469186 | 4:-79646130 | MsG0480023009.01.T01:three_prime_UTR |
| CTTGTTTCTTTGCAAACTCC+GGG | 0.470800 | 4:+79647044 | None:intergenic |
| TCATCCATTTGCACAATTGT+CGG | 0.476880 | 4:-79646341 | MsG0480023009.01.T01:CDS |
| GACCCCGACAATTGTGCAAA+TGG | 0.481521 | 4:+79646337 | None:intergenic |
| CAAACAAGATTAATGGAGAC+AGG | 0.481712 | 4:+79646038 | None:intergenic |
| CCTCTGATAGTTCGCGGGCC+AGG | 0.482336 | 4:-79646271 | MsG0480023009.01.T01:CDS |
| ACAAAGCTCTGTTGTTGTAC+AGG | 0.489559 | 4:-79647291 | MsG0480023009.01.T01:CDS |
| AGCTTGTTTATCTTGTATAC+GGG | 0.500385 | 4:-79646068 | MsG0480023009.01.T01:three_prime_UTR |
| TCAGGCGTGTGCATCAGCTC+AGG | 0.537437 | 4:-79647095 | MsG0480023009.01.T01:intron |
| TGATGGAGCGCCTAGATATG+AGG | 0.553770 | 4:+79646196 | None:intergenic |
| AAATTGGTTCTTACCCGTAG+TGG | 0.559667 | 4:+79647194 | None:intergenic |
| GTCTAGTGCCAGAACCACTA+CGG | 0.560015 | 4:-79647208 | MsG0480023009.01.T01:CDS |
| GCTGGTGCTCAAGTCACAGC+GGG | 0.561102 | 4:-79646247 | MsG0480023009.01.T01:CDS |
| TTGCAGAATGACATCTATGA+TGG | 0.572950 | 4:+79646179 | None:intergenic |
| TCTAGTGCCAGAACCACTAC+GGG | 0.573079 | 4:-79647207 | MsG0480023009.01.T01:intron |
| AATCAACCTCTGATAGTTCG+CGG | 0.577271 | 4:-79646277 | MsG0480023009.01.T01:CDS |
| TACAGGTGATAATTCTCGCA+AGG | 0.579848 | 4:-79647274 | MsG0480023009.01.T01:CDS |
| ATCAACCTCTGATAGTTCGC+GGG | 0.582260 | 4:-79646276 | MsG0480023009.01.T01:CDS |
| GGTGCTCAAGTCACAGCGGG+TGG | 0.586582 | 4:-79646244 | MsG0480023009.01.T01:CDS |
| ATTGAGATACGTGGGAGTGG+TGG | 0.596662 | 4:-79646413 | MsG0480023009.01.T01:CDS |
| CCTGGCCCGCGAACTATCAG+AGG | 0.604093 | 4:+79646271 | None:intergenic |
| ATCCATTTGCACAATTGTCG+GGG | 0.609087 | 4:-79646339 | MsG0480023009.01.T01:CDS |
| GGTATTGAGATACGTGGGAG+TGG | 0.611935 | 4:-79646416 | MsG0480023009.01.T01:CDS |
| GGGTTGTTGCAGGATATGGA+TGG | 0.623937 | 4:+79645934 | None:intergenic |
| ACAGGTGATAATTCTCGCAA+GGG | 0.634755 | 4:-79647273 | MsG0480023009.01.T01:CDS |
| TAATTGCATTCACAACAAGA+AGG | 0.639179 | 4:-79646306 | MsG0480023009.01.T01:CDS |
| CCTACCAAACAACTCAAGAG+AGG | 0.649702 | 4:+79646130 | None:intergenic |
| AGAGCTGCGAAGATACAAGA+AGG | 0.656222 | 4:-79646365 | MsG0480023009.01.T01:CDS |
| TTGTAGGTATTGAGATACGT+GGG | 0.666439 | 4:-79646421 | MsG0480023009.01.T01:intron |
| TTTGTAGGTATTGAGATACG+TGG | 0.669349 | 4:-79646422 | MsG0480023009.01.T01:intron |
| ACAGCTACCAAAATTTGACC+CGG | 0.679982 | 4:-79647062 | MsG0480023009.01.T01:CDS |
| AGAAGATGCTGACAATGCTG+GGG | 0.682028 | 4:-79647023 | MsG0480023009.01.T01:CDS |
| AGCTGGTGCTCAAGTCACAG+CGG | 0.710898 | 4:-79646248 | MsG0480023009.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATGAAATAAAGTTT+AGG | + | Chr4:79646560-79646579 | None:intergenic | 10.0% |
| !! | AGAAAATAATGTATGTAATA+TGG | + | Chr4:79646410-79646429 | None:intergenic | 15.0% |
| !! | ACTGCATAATTTATAGAAAT+TGG | + | Chr4:79646104-79646123 | None:intergenic | 20.0% |
| !! | CAGATCTATTATAGAAATTT+AGG | + | Chr4:79646613-79646632 | None:intergenic | 20.0% |
| !! | CCATCTTGAAAAAATAATTA+TGG | + | Chr4:79646754-79646773 | None:intergenic | 20.0% |
| !!! | ATCGACATTACAAAATTTTA+TGG | + | Chr4:79647126-79647145 | None:intergenic | 20.0% |
| !!! | CCATAATTATTTTTTCAAGA+TGG | - | Chr4:79646751-79646770 | MsG0480023009.01.T01:intron | 20.0% |
| ! | AAATAAAGTTTAGGTGAGTT+GGG | + | Chr4:79646551-79646570 | None:intergenic | 25.0% |
| ! | TCTATAAATTATGCAGTTCA+TGG | - | Chr4:79646107-79646126 | MsG0480023009.01.T01:three_prime_UTR | 25.0% |
| !! | ATCTGAAGTAAAAGTGTAAA+AGG | - | Chr4:79646628-79646647 | MsG0480023009.01.T01:intron | 25.0% |
| !! | CGAATAGGCATTTTAAATTT+TGG | - | Chr4:79647314-79647333 | MsG0480023009.01.T01:CDS | 25.0% |
| !!! | CTACTTTTATTAAGTTTGAC+AGG | + | Chr4:79646485-79646504 | None:intergenic | 25.0% |
| !!! | TAGCTTGTTTATCTTGTATA+CGG | - | Chr4:79647210-79647229 | MsG0480023009.01.T01:CDS | 25.0% |
| GAAATAAAGTTTAGGTGAGT+TGG | + | Chr4:79646552-79646571 | None:intergenic | 30.0% | |
| GTGGATGTGACAAATAAAAA+AGG | - | Chr4:79646885-79646904 | MsG0480023009.01.T01:intron | 30.0% | |
| TAATTGCATTCACAACAAGA+AGG | - | Chr4:79646973-79646992 | MsG0480023009.01.T01:intron | 30.0% | |
| TAATTTAGACTGTCTCGAAT+AGG | - | Chr4:79647299-79647318 | MsG0480023009.01.T01:CDS | 30.0% | |
| TACCTACAAAGTACAAACAT+AGG | + | Chr4:79646847-79646866 | None:intergenic | 30.0% | |
| TCATGAACCAAAATTGACAT+AGG | + | Chr4:79645944-79645963 | None:intergenic | 30.0% | |
| TTCCTATGTTTGTACTTTGT+AGG | - | Chr4:79646842-79646861 | MsG0480023009.01.T01:intron | 30.0% | |
| ! | AGCTTGTTTATCTTGTATAC+GGG | - | Chr4:79647211-79647230 | MsG0480023009.01.T01:CDS | 30.0% |
| ! | TGTCTCCATTAATCTTGTTT+GGG | - | Chr4:79647243-79647262 | MsG0480023009.01.T01:CDS | 30.0% |
| !!! | CTGTTTTGATGATTTCATTC+AGG | - | Chr4:79646166-79646185 | MsG0480023009.01.T01:three_prime_UTR | 30.0% |
| CAAACAAGATTAATGGAGAC+AGG | + | Chr4:79647244-79647263 | None:intergenic | 35.0% | |
| CTGTCTCCATTAATCTTGTT+TGG | - | Chr4:79647242-79647261 | MsG0480023009.01.T01:CDS | 35.0% | |
| TCATCCATTTGCACAATTGT+CGG | - | Chr4:79646938-79646957 | MsG0480023009.01.T01:intron | 35.0% | |
| TTGCAGAATGACATCTATGA+TGG | + | Chr4:79647103-79647122 | None:intergenic | 35.0% | |
| ! | AATAAAAGTAGAGTGCTCAC+AGG | - | Chr4:79646494-79646513 | MsG0480023009.01.T01:intron | 35.0% |
| ! | GGAAGCAAATTTAGAGTGTT+TGG | - | Chr4:79646524-79646543 | MsG0480023009.01.T01:intron | 35.0% |
| ! | TCTTGTTTCTTTGCAAACTC+CGG | + | Chr4:79646239-79646258 | None:intergenic | 35.0% |
| !! | ACACTTTTTACTTCAGCTTG+TGG | + | Chr4:79646658-79646677 | None:intergenic | 35.0% |
| !! | TTGTAGGTATTGAGATACGT+GGG | - | Chr4:79646858-79646877 | MsG0480023009.01.T01:intron | 35.0% |
| !! | TTTGTAGGTATTGAGATACG+TGG | - | Chr4:79646857-79646876 | MsG0480023009.01.T01:intron | 35.0% |
| !!! | TCAATTTTGGTTCATGACTG+TGG | - | Chr4:79645947-79645966 | MsG0480023009.01.T01:three_prime_UTR | 35.0% |
| AAACAGCCATGTCAAGCAAT+TGG | + | Chr4:79646152-79646171 | None:intergenic | 40.0% | |
| AAGAAGATGCTGACAATGCT+GGG | - | Chr4:79646255-79646274 | MsG0480023009.01.T01:CDS | 40.0% | |
| AATCAACCTCTGATAGTTCG+CGG | - | Chr4:79647002-79647021 | MsG0480023009.01.T01:intron | 40.0% | |
| ACAAAGCTCTGTTGTTGTAC+AGG | - | Chr4:79645988-79646007 | MsG0480023009.01.T01:three_prime_UTR | 40.0% | |
| ACAGCTACCAAAATTTGACC+CGG | - | Chr4:79646217-79646236 | MsG0480023009.01.T01:CDS | 40.0% | |
| ACAGGTGATAATTCTCGCAA+GGG | - | Chr4:79646006-79646025 | MsG0480023009.01.T01:three_prime_UTR | 40.0% | |
| ATAATTCTCGCAAGGGAATC+TGG | - | Chr4:79646013-79646032 | MsG0480023009.01.T01:three_prime_UTR | 40.0% | |
| ATCCATTTGCACAATTGTCG+GGG | - | Chr4:79646940-79646959 | MsG0480023009.01.T01:intron | 40.0% | |
| CATCCATTTGCACAATTGTC+GGG | - | Chr4:79646939-79646958 | MsG0480023009.01.T01:intron | 40.0% | |
| CGACTCCCAAACAAGATTAA+TGG | + | Chr4:79647251-79647270 | None:intergenic | 40.0% | |
| GCCAATCCAACATAAGTCAA+CGG | + | Chr4:79646683-79646702 | None:intergenic | 40.0% | |
| TACAGGTGATAATTCTCGCA+AGG | - | Chr4:79646005-79646024 | MsG0480023009.01.T01:three_prime_UTR | 40.0% | |
| TCTGGCACTAGACTTTCAAT+TGG | + | Chr4:79646064-79646083 | None:intergenic | 40.0% | |
| TTACGACTTGCCTCATATCT+AGG | - | Chr4:79647073-79647092 | MsG0480023009.01.T01:CDS | 40.0% | |
| ! | AAATTGGTTCTTACCCGTAG+TGG | + | Chr4:79646088-79646107 | None:intergenic | 40.0% |
| ! | CTTGTTTCTTTGCAAACTCC+GGG | + | Chr4:79646238-79646257 | None:intergenic | 40.0% |
| ! | GTTGACTTATGTTGGATTGG+CGG | - | Chr4:79646682-79646701 | MsG0480023009.01.T01:intron | 40.0% |
| ! | TGTTCCTCTCTTGAGTTGTT+TGG | - | Chr4:79647145-79647164 | MsG0480023009.01.T01:intron | 40.0% |
| !! | ACCGTTGACTTATGTTGGAT+TGG | - | Chr4:79646679-79646698 | MsG0480023009.01.T01:intron | 40.0% |
| !! | CGTTTCAACCTTGCTTTTCT+TGG | + | Chr4:79646458-79646477 | None:intergenic | 40.0% |
| !! | GTGTTACCGTTGACTTATGT+TGG | - | Chr4:79646674-79646693 | MsG0480023009.01.T01:intron | 40.0% |
| !! | TTGACTTATGTTGGATTGGC+GGG | - | Chr4:79646683-79646702 | MsG0480023009.01.T01:intron | 40.0% |
| AGAAGATGCTGACAATGCTG+GGG | - | Chr4:79646256-79646275 | MsG0480023009.01.T01:CDS | 45.0% | |
| AGAGCTGCGAAGATACAAGA+AGG | - | Chr4:79646914-79646933 | MsG0480023009.01.T01:intron | 45.0% | |
| ATCAACCTCTGATAGTTCGC+GGG | - | Chr4:79647003-79647022 | MsG0480023009.01.T01:intron | 45.0% | |
| CAAGAAGATGCTGACAATGC+TGG | - | Chr4:79646254-79646273 | MsG0480023009.01.T01:CDS | 45.0% | |
| CCAGAACCAATTGCTTGACA+TGG | - | Chr4:79646143-79646162 | MsG0480023009.01.T01:three_prime_UTR | 45.0% | |
| CCTACAAGCCAAGAAAAGCA+AGG | - | Chr4:79646447-79646466 | MsG0480023009.01.T01:intron | 45.0% | |
| CCTACCAAACAACTCAAGAG+AGG | + | Chr4:79647152-79647171 | None:intergenic | 45.0% | |
| ! | AAAGTAGAGTGCTCACAGGT+TGG | - | Chr4:79646498-79646517 | MsG0480023009.01.T01:intron | 45.0% |
| ! | CCATGTCAAGCAATTGGTTC+TGG | + | Chr4:79646146-79646165 | None:intergenic | 45.0% |
| ! | CCTCTCTTGAGTTGTTTGGT+AGG | - | Chr4:79647149-79647168 | MsG0480023009.01.T01:intron | 45.0% |
| ! | GCAAACTCCGGGTCAAATTT+TGG | + | Chr4:79646227-79646246 | None:intergenic | 45.0% |
| !!! | CCTTGCTTTTCTTGGCTTGT+AGG | + | Chr4:79646450-79646469 | None:intergenic | 45.0% |
| ATTGAGATACGTGGGAGTGG+TGG | - | Chr4:79646866-79646885 | MsG0480023009.01.T01:intron | 50.0% | |
| GACCCCGACAATTGTGCAAA+TGG | + | Chr4:79646945-79646964 | None:intergenic | 50.0% | |
| GTCTAGTGCCAGAACCACTA+CGG | - | Chr4:79646071-79646090 | MsG0480023009.01.T01:three_prime_UTR | 50.0% | |
| GTTCTTACCCGTAGTGGTTC+TGG | + | Chr4:79646082-79646101 | None:intergenic | 50.0% | |
| TCTAGTGCCAGAACCACTAC+GGG | - | Chr4:79646072-79646091 | MsG0480023009.01.T01:three_prime_UTR | 50.0% | |
| ! | GGTATTGAGATACGTGGGAG+TGG | - | Chr4:79646863-79646882 | MsG0480023009.01.T01:intron | 50.0% |
| ! | TGATGGAGCGCCTAGATATG+AGG | + | Chr4:79647086-79647105 | None:intergenic | 50.0% |
| !! | AGAGTGCTCACAGGTTGGTA+GGG | - | Chr4:79646503-79646522 | MsG0480023009.01.T01:intron | 50.0% |
| !! | TAGAGTGCTCACAGGTTGGT+AGG | - | Chr4:79646502-79646521 | MsG0480023009.01.T01:intron | 50.0% |
| AGCTGGTGCTCAAGTCACAG+CGG | - | Chr4:79647031-79647050 | MsG0480023009.01.T01:CDS | 55.0% | |
| GCTGGTGCTCAAGTCACAGC+GGG | - | Chr4:79647032-79647051 | MsG0480023009.01.T01:CDS | 60.0% | |
| GTGACTTGAGCACCAGCTCC+TGG | + | Chr4:79647029-79647048 | None:intergenic | 60.0% | |
| TCAGGCGTGTGCATCAGCTC+AGG | - | Chr4:79646184-79646203 | MsG0480023009.01.T01:three_prime_UTR | 60.0% | |
| ATAGTTCGCGGGCCAGGAGC+TGG | - | Chr4:79647014-79647033 | MsG0480023009.01.T01:intron | 65.0% | |
| CCTCTGATAGTTCGCGGGCC+AGG | - | Chr4:79647008-79647027 | MsG0480023009.01.T01:intron | 65.0% | |
| CCTGGCCCGCGAACTATCAG+AGG | + | Chr4:79647011-79647030 | None:intergenic | 65.0% | |
| GGTGCTCAAGTCACAGCGGG+TGG | - | Chr4:79647035-79647054 | MsG0480023009.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 79645944 | 79647357 | 79645944 | ID=MsG0480023009.01;Name=MsG0480023009.01 |
| Chr4 | mRNA | 79645944 | 79647357 | 79645944 | ID=MsG0480023009.01.T01;Parent=MsG0480023009.01;Name=MsG0480023009.01.T01;_AED=0.47;_eAED=0.50;_QI=0|1|0.66|1|1|1|3|263|157 |
| Chr4 | exon | 79645944 | 79646437 | 79645944 | ID=MsG0480023009.01.T01:exon:6118;Parent=MsG0480023009.01.T01 |
| Chr4 | exon | 79647021 | 79647113 | 79647021 | ID=MsG0480023009.01.T01:exon:6117;Parent=MsG0480023009.01.T01 |
| Chr4 | exon | 79647208 | 79647357 | 79647208 | ID=MsG0480023009.01.T01:exon:6116;Parent=MsG0480023009.01.T01 |
| Chr4 | CDS | 79647208 | 79647357 | 79647208 | ID=MsG0480023009.01.T01:cds;Parent=MsG0480023009.01.T01 |
| Chr4 | CDS | 79647021 | 79647113 | 79647021 | ID=MsG0480023009.01.T01:cds;Parent=MsG0480023009.01.T01 |
| Chr4 | CDS | 79646207 | 79646437 | 79646207 | ID=MsG0480023009.01.T01:cds;Parent=MsG0480023009.01.T01 |
| Chr4 | three_prime_UTR | 79645944 | 79646206 | 79645944 | ID=MsG0480023009.01.T01:three_prime_utr;Parent=MsG0480023009.01.T01 |
| Gene Sequence |
| Protein sequence |
