AlfalfaGEDB | MsG0280011021.01

M. sativa cultivar ZhongmuNo.1 / MsG0280011021.01

KEGG: -
GO: GO:0003677 GO:0006355
PFAM: PF02701

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011021.01.T01	XP_013465384.1	96.393	305	6	4	1	302	1	303	0	592

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011021.01.T01	Q9M2U1	39.498	319	157	14	1	290	1	312	1.06E-46	162

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011021.01.T01	A0A072VBP4	96.393	305	6	4	1	302	1	303	0.0	592

TFs/TRs:

Gene ID	Type	Classification
MsG0280011021.01.T01	TF	C2C2-Dof

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0280011021.01	MsG0380013636.01	0.809831	1.557752e-50	9.241971e-48
MsG0280011021.01	MsG0480020990.01	0.819389	1.191760e-52	9.157753e-50
MsG0280011021.01	MsG0480023275.01	0.803665	3.128608e-49	1.581319e-46
MsG0280011021.01	MsG0880046128.01	0.805808	1.116257e-49	5.962148e-47
MsG0280008722.01	MsG0280011021.01	0.811904	5.544079e-51	3.474274e-48

PPI

Gene1	Gene2	Type
MsG0280011021.01	MsG0480020990.01	PPI
MsG0280011021.01	MsG0480020944.01	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011021.01.T01	MTR_2g096740	96.393	305	6	4	1	302	1	303	0.0	592
MsG0280011021.01.T01	MTR_2g096740	91.475	305	6	5	1	302	1	288	0.0	553
MsG0280011021.01.T01	MTR_4g063780	43.099	355	119	17	1	296	1	331	8.76e-62	199
MsG0280011021.01.T01	MTR_4g022370	40.549	328	108	17	1	261	1	308	1.61e-47	163
MsG0280011021.01.T01	MTR_7g059400	37.818	275	115	6	1	238	1	256	3.41e-43	151
MsG0280011021.01.T01	MTR_7g024670	52.500	160	45	5	1	146	1	143	8.52e-42	148
MsG0280011021.01.T01	MTR_8g068210	56.000	100	41	1	55	154	12	108	5.70e-33	124
MsG0280011021.01.T01	MTR_8g479350	62.069	87	29	1	78	164	68	150	2.24e-32	122
MsG0280011021.01.T01	MTR_3g077750	52.475	101	48	0	28	128	11	111	2.97e-31	119
MsG0280011021.01.T01	MTR_4g088580	68.919	74	18	1	79	147	56	129	3.48e-31	120
MsG0280011021.01.T01	MTR_8g015840	76.119	67	14	1	73	139	15	79	9.34e-31	115
MsG0280011021.01.T01	MTR_4g461080	76.923	65	14	1	67	130	17	81	1.26e-30	116
MsG0280011021.01.T01	MTR_2g093220	64.935	77	27	0	56	132	18	94	1.46e-30	117
MsG0280011021.01.T01	MTR_5g031440	82.143	56	10	0	73	128	38	93	2.34e-30	117
MsG0280011021.01.T01	MTR_3g091820	71.642	67	19	0	67	133	32	98	2.38e-30	116
MsG0280011021.01.T01	MTR_3g090430	70.149	67	20	0	68	134	41	107	7.50e-30	115
MsG0280011021.01.T01	MTR_8g079060	52.000	100	44	2	71	166	22	121	1.21e-29	112
MsG0280011021.01.T01	MTR_4g109980	86.538	52	7	0	77	128	39	90	1.48e-29	114
MsG0280011021.01.T01	MTR_2g059540	90.000	50	5	0	77	126	30	79	2.04e-28	108
MsG0280011021.01.T01	MTR_8g027295	72.581	62	17	0	75	136	21	82	3.63e-28	110
MsG0280011021.01.T01	MTR_2g014170	75.362	69	17	0	77	145	44	112	4.24e-28	110
MsG0280011021.01.T01	MTR_2g014060	84.314	51	8	0	79	129	26	76	2.05e-27	109
MsG0280011021.01.T01	MTR_1g077600	68.333	60	19	0	75	134	40	99	6.88e-27	106
MsG0280011021.01.T01	MTR_1g077600	68.333	60	19	0	75	134	40	99	8.27e-27	106
MsG0280011021.01.T01	MTR_4g089095	75.862	58	13	1	78	135	50	106	8.95e-27	107
MsG0280011021.01.T01	MTR_4g089095	75.862	58	13	1	78	135	16	72	1.02e-26	105
MsG0280011021.01.T01	MTR_2g013370	50.538	93	27	2	42	134	28	101	1.15e-26	105
MsG0280011021.01.T01	MTR_1g056810	77.358	53	12	0	80	132	14	66	1.32e-26	106
MsG0280011021.01.T01	MTR_5g041420	44.118	102	57	0	30	131	90	191	7.48e-26	104
MsG0280011021.01.T01	MTR_6g012450	52.273	88	41	1	44	131	103	189	7.78e-26	107
MsG0280011021.01.T01	MTR_2g016030	56.410	78	30	1	64	141	37	110	1.01e-25	100
MsG0280011021.01.T01	MTR_8g044220	51.163	86	42	0	56	141	96	181	2.13e-25	105
MsG0280011021.01.T01	MTR_6g027450	58.824	68	28	0	65	132	76	143	4.44e-24	100
MsG0280011021.01.T01	MTR_7g010950	61.538	65	25	0	67	131	124	188	6.44e-24	101
MsG0280011021.01.T01	MTR_7g086780	59.701	67	27	0	65	131	86	152	1.18e-23	100
MsG0280011021.01.T01	MTR_3g435480	57.534	73	30	1	59	131	118	189	1.25e-23	100
MsG0280011021.01.T01	MTR_5g041530	47.778	90	47	0	42	131	104	193	1.66e-23	99.4
MsG0280011021.01.T01	MTR_6g027460	56.716	67	29	0	65	131	83	149	2.61e-23	98.6
MsG0280011021.01.T01	MTR_4g082060	41.481	135	72	3	75	207	119	248	3.06e-23	99.4
MsG0280011021.01.T01	MTR_5g041380	47.126	87	45	1	45	131	95	180	1.71e-21	93.6
MsG0280011021.01.T01	MTR_5g041400	53.333	75	32	1	57	131	101	172	6.91e-21	91.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011021.01.T01	AT3G55370	39.498	319	157	14	1	290	1	312	1.08e-47	162
MsG0280011021.01.T01	AT3G55370	42.975	242	114	9	1	224	1	236	8.07e-46	158
MsG0280011021.01.T01	AT3G55370	37.742	310	158	13	9	290	55	357	5.11e-41	146
MsG0280011021.01.T01	AT2G37590	51.351	148	55	4	1	134	1	145	1.45e-40	144
MsG0280011021.01.T01	AT2G28810	48.408	157	41	4	1	129	1	145	1.03e-37	137
MsG0280011021.01.T01	AT5G65590	72.500	80	17	1	65	139	23	102	8.48e-35	128
MsG0280011021.01.T01	AT5G02460	56.303	119	35	2	39	157	73	174	1.28e-34	130
MsG0280011021.01.T01	AT2G28810	61.702	94	24	1	36	129	47	128	7.51e-34	126
MsG0280011021.01.T01	AT1G07640	73.611	72	18	1	64	135	8	78	2.24e-33	124
MsG0280011021.01.T01	AT5G60200	65.333	75	26	0	71	145	48	122	4.49e-33	122
MsG0280011021.01.T01	AT1G07640	73.611	72	18	1	64	135	64	134	5.12e-33	124
MsG0280011021.01.T01	AT1G07640	73.611	72	18	1	64	135	72	142	7.81e-33	124
MsG0280011021.01.T01	AT1G51700	47.934	121	63	0	53	173	8	128	1.93e-32	119
MsG0280011021.01.T01	AT5G60850	67.532	77	23	1	77	151	50	126	2.57e-32	122
MsG0280011021.01.T01	AT5G66940	56.322	87	38	0	64	150	18	104	1.06e-30	115
MsG0280011021.01.T01	AT3G45610	63.889	72	26	0	68	139	30	101	2.58e-30	115
MsG0280011021.01.T01	AT5G62940	78.333	60	13	0	69	128	64	123	1.13e-29	116
MsG0280011021.01.T01	AT2G28510	78.333	60	13	0	77	136	47	106	1.44e-29	114
MsG0280011021.01.T01	AT4G21050	57.647	85	33	1	64	148	13	94	1.54e-29	112
MsG0280011021.01.T01	AT3G21270	86.792	53	7	0	78	130	29	81	1.99e-29	111
MsG0280011021.01.T01	AT3G52440	63.158	76	28	0	74	149	21	96	2.78e-29	112
MsG0280011021.01.T01	AT3G52440	63.158	76	28	0	74	149	40	115	3.66e-29	112
MsG0280011021.01.T01	AT1G28310	77.586	58	13	0	78	135	27	84	5.02e-29	113
MsG0280011021.01.T01	AT4G38000	73.770	61	16	0	72	132	35	95	7.57e-29	111
MsG0280011021.01.T01	AT1G28310	77.586	58	13	0	78	135	51	108	7.95e-29	113
MsG0280011021.01.T01	AT1G21340	71.667	60	17	0	76	135	36	95	1.85e-28	110
MsG0280011021.01.T01	AT3G50410	74.576	59	15	0	78	136	30	88	8.40e-28	108
MsG0280011021.01.T01	AT4G24060	66.667	66	22	0	67	132	42	107	1.33e-27	110
MsG0280011021.01.T01	AT3G61850	41.667	144	76	4	22	165	20	155	5.74e-27	107
MsG0280011021.01.T01	AT3G61850	41.958	143	75	4	23	165	9	143	5.92e-27	107
MsG0280011021.01.T01	AT3G61850	41.958	143	75	4	23	165	9	143	5.92e-27	107
MsG0280011021.01.T01	AT3G61850	41.958	143	75	4	23	165	21	155	8.84e-27	107
MsG0280011021.01.T01	AT3G61850	53.398	103	38	4	63	165	51	143	8.93e-27	107
MsG0280011021.01.T01	AT1G47655	68.182	66	20	1	62	126	12	77	2.39e-26	103
MsG0280011021.01.T01	AT4G00940	77.358	53	12	0	80	132	70	122	2.79e-25	102
MsG0280011021.01.T01	AT4G00940	77.358	53	12	0	80	132	70	122	2.79e-25	102
MsG0280011021.01.T01	AT4G00940	77.358	53	12	0	80	132	70	122	2.79e-25	102
MsG0280011021.01.T01	AT1G64620	68.852	61	19	0	67	127	38	98	3.67e-25	103
MsG0280011021.01.T01	AT2G34140	70.175	57	17	0	75	131	55	111	7.70e-25	98.6
MsG0280011021.01.T01	AT1G29160	70.175	57	17	0	75	131	59	115	1.23e-24	98.2
MsG0280011021.01.T01	AT2G46590	78.431	51	11	0	75	125	65	115	2.19e-24	101
MsG0280011021.01.T01	AT2G46590	78.431	51	11	0	75	125	77	127	2.45e-24	101
MsG0280011021.01.T01	AT5G39660	58.108	74	30	1	58	131	119	191	5.84e-24	101
MsG0280011021.01.T01	AT5G39660	58.108	74	30	1	58	131	119	191	5.84e-24	101
MsG0280011021.01.T01	AT5G39660	58.108	74	30	1	58	131	119	191	5.84e-24	101
MsG0280011021.01.T01	AT3G47500	48.352	91	40	2	47	131	74	163	6.86e-24	101
MsG0280011021.01.T01	AT1G69570	63.492	63	23	0	75	137	129	191	2.11e-23	99.4
MsG0280011021.01.T01	AT1G26790	56.164	73	29	1	59	131	95	164	2.54e-23	99.0
MsG0280011021.01.T01	AT5G62430	47.126	87	43	1	45	131	24	107	3.48e-23	97.1
MsG0280011021.01.T01	AT4G21040	35.955	178	74	8	80	218	27	203	1.56e-22	94.0
MsG0280011021.01.T01	AT4G21080	61.905	63	20	1	80	142	27	85	1.11e-21	92.0
MsG0280011021.01.T01	AT4G21030	49.296	71	32	1	70	140	17	83	1.82e-15	73.9

Find 84 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTTATGATATCAATATTATT+TGG	0.137554	2:+78493004	MsG0280011021.01.T01:three_prime_UTR
TTATGTATTGTGTGAGTTTA+TGG	0.180155	2:+78492893	MsG0280011021.01.T01:three_prime_UTR
AACACAAGCATGGTAGTATT+TGG	0.212704	2:+78492817	MsG0280011021.01.T01:three_prime_UTR
GCAAGACATGTAGGCGTTAT+TGG	0.219753	2:+78491890	MsG0280011021.01.T01:CDS
TTGAACCAACAACTACTTCT+AGG	0.230645	2:+78492301	MsG0280011021.01.T01:CDS
TTCTCATTACTATTTGATAT+TGG	0.260955	2:-78492009	None:intergenic
CAGTTTCCTTTCATGAATAA+TGG	0.306796	2:+78492228	MsG0280011021.01.T01:CDS
TCAACAATTTCACTTTGAAA+TGG	0.326972	2:-78492282	None:intergenic
TGAAGAGATGTCATGTAATT+AGG	0.330958	2:-78492102	None:intergenic
TTATTCTCTGACATATTCAT+TGG	0.339957	2:-78492393	None:intergenic
CAACAATTTCACTTTGAAAT+GGG	0.353913	2:-78492281	None:intergenic
TTATGATATCAATATTATTT+GGG	0.362696	2:+78493005	MsG0280011021.01.T01:three_prime_UTR
ACAACCATTACAATAATTCA+TGG	0.381419	2:+78492415	MsG0280011021.01.T01:CDS
GTTGGAAACATGTTTCAAAT+TGG	0.387187	2:+78492144	MsG0280011021.01.T01:CDS
GGAAGCAACTGATGTTGATT+TGG	0.388221	2:-78491631	None:intergenic
AGCTTGATCCGGTATCGAAC+CGG	0.392442	2:-78491701	None:intergenic
TCATGGTCTTGCATCTTCTT+CGG	0.406074	2:+78492446	MsG0280011021.01.T01:CDS
CAAGAGGAGTTGAAGTTGAA+TGG	0.407718	2:-78492053	None:intergenic
ATGGTGCAGGCTCAATTATC+AGG	0.408827	2:+78491677	MsG0280011021.01.T01:CDS
GATGCCTGCATCGGTTAAAT+CGG	0.412501	2:+78492335	MsG0280011021.01.T01:CDS
TGTAATTAGGTCTATTAGTT+GGG	0.420123	2:-78492089	None:intergenic
ATCCAGGGCATCATCTTTGA+TGG	0.425201	2:+78492696	MsG0280011021.01.T01:intron
ATGTAATTAGGTCTATTAGT+TGG	0.434589	2:-78492090	None:intergenic
CTTATTTAGATCCTCTCAAT+TGG	0.441172	2:+78491403	MsG0280011021.01.T01:CDS
AAGGAGGAGTTGTGGATCAG+TGG	0.442180	2:+78492196	MsG0280011021.01.T01:CDS
ATCGTTTGCACTGCTAGAAA+AGG	0.445327	2:+78492491	MsG0280011021.01.T01:three_prime_UTR
CATTCAACTTCAACTCCTCT+TGG	0.446006	2:+78492054	MsG0280011021.01.T01:CDS
TGAAGTTCAAACTGGTCATC+AGG	0.450714	2:+78491741	MsG0280011021.01.T01:CDS
TATCAGGCCCGGTTCGATAC+CGG	0.455922	2:+78491693	MsG0280011021.01.T01:CDS
CTACGACACCCTCCACCAAC+AGG	0.460856	2:-78491940	None:intergenic
AAAAGTGTCTTGGTTGAGAC+AGG	0.461945	2:-78491867	None:intergenic
TTGAGAGGATCTAAATAAGA+TGG	0.471759	2:-78491399	None:intergenic
CAGTCCATGAATTATTGTAA+TGG	0.478494	2:-78492419	None:intergenic
TCAAGTACTGGTGGAGGAGA+AGG	0.484627	2:+78492177	MsG0280011021.01.T01:CDS
ACATGTTTCCAACACCGAAC+CGG	0.484940	2:-78492134	None:intergenic
TGTAAATCATGTTGTTCAGC+TGG	0.485690	2:-78492742	None:intergenic
GGTGATTATAGTTCAAGTAC+TGG	0.489772	2:+78492165	MsG0280011021.01.T01:CDS
TGAACCAACAACTACTTCTA+GGG	0.497338	2:+78492302	MsG0280011021.01.T01:CDS
GCCTGAGCTTGAGCTTGATC+CGG	0.498212	2:-78491712	None:intergenic
TGTTCCGATTTAACCGATGC+AGG	0.498710	2:-78492339	None:intergenic
GCAGCTCATGAAGTTCAAAC+TGG	0.502505	2:+78491733	MsG0280011021.01.T01:CDS
CTTCAGAATCTGAACCGGTT+CGG	0.507338	2:+78492120	MsG0280011021.01.T01:CDS
CATCTCTTCAGAATCTGAAC+CGG	0.507412	2:+78492115	MsG0280011021.01.T01:CDS
AATCTGAACCGGTTCGGTGT+TGG	0.507539	2:+78492126	MsG0280011021.01.T01:CDS
TCTTCGAATGGCGAAAATCA+AGG	0.513934	2:+78492775	MsG0280011021.01.T01:three_prime_UTR
TACTACTTTGATGCCTGCAT+CGG	0.514344	2:+78492326	MsG0280011021.01.T01:CDS
GTAACCCTAGAAGTAGTTGT+TGG	0.518165	2:-78492306	None:intergenic
TTAAGAAATGTTCCTGTTGG+TGG	0.525025	2:+78491928	MsG0280011021.01.T01:CDS
ACCGGATCAAGCTCAAGCTC+AGG	0.531426	2:+78491711	MsG0280011021.01.T01:CDS
CATGTCTTGCAAAAGTGTCT+TGG	0.535988	2:-78491877	None:intergenic
TCATCACAGCCACATGGTGC+AGG	0.545230	2:+78491664	MsG0280011021.01.T01:CDS
TCAAAACCATTATTCATGAA+AGG	0.546534	2:-78492234	None:intergenic
CACTTCAAAGCTGTCTCTGA+AGG	0.551798	2:-78491793	None:intergenic
AGAAATGTTCCTGTTGGTGG+AGG	0.558097	2:+78491931	MsG0280011021.01.T01:CDS
CAAGTTGCACTATCTTCGAA+TGG	0.559769	2:+78492763	MsG0280011021.01.T01:three_prime_UTR
CTTACTTGCTGCCAATTGAG+AGG	0.568314	2:-78491414	None:intergenic
AAATCGGAACACAACGGAGG+AGG	0.573191	2:+78492351	MsG0280011021.01.T01:CDS
GCATTAAGAAATGTTCCTGT+TGG	0.573758	2:+78491925	MsG0280011021.01.T01:CDS
GCTTGATCCGGTATCGAACC+GGG	0.575393	2:-78491700	None:intergenic
GCAGGCTCAATTATCAGGCC+CGG	0.575596	2:+78491682	MsG0280011021.01.T01:CDS
AAGGTGGTGGTAACTTAGCT+TGG	0.577015	2:-78491774	None:intergenic
AGTACTGGTGGAGGAGAAGG+AGG	0.578007	2:+78492180	MsG0280011021.01.T01:CDS
AAAGCTGTCTCTGAAGGTGG+TGG	0.586444	2:-78491787	None:intergenic
TATAGTTCAAGTACTGGTGG+AGG	0.593548	2:+78492171	MsG0280011021.01.T01:CDS
GATTATAGTTCAAGTACTGG+TGG	0.600312	2:+78492168	MsG0280011021.01.T01:CDS
GTAGGCGTTATTGGACAAGA+GGG	0.605161	2:+78491899	MsG0280011021.01.T01:CDS
AAAAGAAATAAACACAAGCA+TGG	0.611926	2:+78492807	MsG0280011021.01.T01:three_prime_UTR
TGTGGCTGTGATGAGGATAG+TGG	0.611946	2:-78491655	None:intergenic
TGGAGGAGAAGGAGGAGTTG+TGG	0.612099	2:+78492188	MsG0280011021.01.T01:CDS
TGTAGGCGTTATTGGACAAG+AGG	0.616737	2:+78491898	MsG0280011021.01.T01:CDS
TTCAAAGCTGTCTCTGAAGG+TGG	0.619079	2:-78491790	None:intergenic
GAAATGTTCCTGTTGGTGGA+GGG	0.644271	2:+78491932	MsG0280011021.01.T01:CDS
CTATCCTCATCACAGCCACA+TGG	0.646501	2:+78491658	MsG0280011021.01.T01:CDS
GGCTGTGATGAGGATAGTGG+TGG	0.646948	2:-78491652	None:intergenic
TGCACCATGTGGCTGTGATG+AGG	0.663808	2:-78491662	None:intergenic
TAGGCGTTATTGGACAAGAG+GGG	0.675252	2:+78491900	MsG0280011021.01.T01:CDS
AGGCGTTATTGGACAAGAGG+GGG	0.675862	2:+78491901	MsG0280011021.01.T01:CDS
ATAATTGAGCCTGCACCATG+TGG	0.676504	2:-78491673	None:intergenic
CGCAAAAGGATTGAACACCA+TGG	0.701433	2:+78491362	None:intergenic
TGGAATAGAAGAGAAAACCA+TGG	0.712223	2:-78491379	None:intergenic
GGGTGTAAGAATTCACCAAG+AGG	0.726422	2:-78492069	None:intergenic
GTGTTGGTTGATTCACAACG+AGG	0.729681	2:-78491817	None:intergenic
GTTAAATCGGAACACAACGG+AGG	0.733463	2:+78492348	MsG0280011021.01.T01:CDS
TCGGTTAAATCGGAACACAA+CGG	0.745806	2:+78492345	MsG0280011021.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTATGATATCAATATTATTT+GGG	+	Chr2:78493005-78493024	MsG0280011021.01.T01:three_prime_UTR	10.0%
!!	AGAAGATATTATTATTACAA+AGG	-	Chr2:78491492-78491511	None:intergenic	15.0%
!!	GTTATGATATCAATATTATT+TGG	+	Chr2:78493004-78493023	MsG0280011021.01.T01:three_prime_UTR	15.0%
!!	TATTATTATTACAAAGGAAT+AGG	-	Chr2:78491486-78491505	None:intergenic	15.0%
!!	TCATATATAGATATATCACA+AGG	-	Chr2:78491583-78491602	None:intergenic	20.0%
!!	TTCTCATTACTATTTGATAT+TGG	-	Chr2:78492012-78492031	None:intergenic	20.0%
!!!	TAAATAAATTCACTCTTTTG+TGG	-	Chr2:78491461-78491480	None:intergenic	20.0%
!	AAAAGAAATAAACACAAGCA+TGG	+	Chr2:78492807-78492826	MsG0280011021.01.T01:three_prime_UTR	25.0%
!	ACAACCATTACAATAATTCA+TGG	+	Chr2:78492415-78492434	MsG0280011021.01.T01:CDS	25.0%
!	ATACTTAGAGATGAAATTAG+AGG	+	Chr2:78492584-78492603	MsG0280011021.01.T01:intron	25.0%
!	ATGTAATTAGGTCTATTAGT+TGG	-	Chr2:78492093-78492112	None:intergenic	25.0%
!	TCAAAACCATTATTCATGAA+AGG	-	Chr2:78492237-78492256	None:intergenic	25.0%
!	TGTAATGAAAAAAAATCTGC+AGG	-	Chr2:78491523-78491542	None:intergenic	25.0%
!	TGTAATTAGGTCTATTAGTT+GGG	-	Chr2:78492092-78492111	None:intergenic	25.0%
!	TTATGTATTGTGTGAGTTTA+TGG	+	Chr2:78492893-78492912	MsG0280011021.01.T01:three_prime_UTR	25.0%
!	TTATTCTCTGACATATTCAT+TGG	-	Chr2:78492396-78492415	None:intergenic	25.0%
!!	ATTTGATATTGGAGATTTTG+AGG	-	Chr2:78492001-78492020	None:intergenic	25.0%
!!	GTAGTAACAAAATTTTGTGT+TGG	-	Chr2:78491836-78491855	None:intergenic	25.0%
!!	TCAACAATTTCACTTTGAAA+TGG	-	Chr2:78492285-78492304	None:intergenic	25.0%
!!	TTTGATATTGGAGATTTTGA+GGG	-	Chr2:78492000-78492019	None:intergenic	25.0%
!!!	CAACAATTTCACTTTGAAAT+GGG	-	Chr2:78492284-78492303	None:intergenic	25.0%
	ATATCACAAGGTTACAAGAA+AGG	-	Chr2:78491571-78491590	None:intergenic	30.0%
	ATCATCAGTTATCAAATCCA+GGG	+	Chr2:78492681-78492700	MsG0280011021.01.T01:intron	30.0%
	CAGTCCATGAATTATTGTAA+TGG	-	Chr2:78492422-78492441	None:intergenic	30.0%
	CAGTTTCCTTTCATGAATAA+TGG	+	Chr2:78492228-78492247	MsG0280011021.01.T01:CDS	30.0%
	CATCTCTAAGTATAAGTTAG+AGG	-	Chr2:78492577-78492596	None:intergenic	30.0%
	CTTATTTAGATCCTCTCAAT+TGG	+	Chr2:78491403-78491422	MsG0280011021.01.T01:CDS	30.0%
	GCTAGAAAAGGTTGAATTAT+TGG	+	Chr2:78492503-78492522	MsG0280011021.01.T01:intron	30.0%
	GTTGGAAACATGTTTCAAAT+TGG	+	Chr2:78492144-78492163	MsG0280011021.01.T01:CDS	30.0%
	TATCACAAGGTTACAAGAAA+GGG	-	Chr2:78491570-78491589	None:intergenic	30.0%
	TATCATCAGTTATCAAATCC+AGG	+	Chr2:78492680-78492699	MsG0280011021.01.T01:intron	30.0%
	TGAAGAGATGTCATGTAATT+AGG	-	Chr2:78492105-78492124	None:intergenic	30.0%
	TTGAGAGGATCTAAATAAGA+TGG	-	Chr2:78491402-78491421	None:intergenic	30.0%
!!	AATTCATGGACTGATTTTCA+TGG	+	Chr2:78492429-78492448	MsG0280011021.01.T01:CDS	30.0%
	AACACAAGCATGGTAGTATT+TGG	+	Chr2:78492817-78492836	MsG0280011021.01.T01:three_prime_UTR	35.0%
	GCATTAAGAAATGTTCCTGT+TGG	+	Chr2:78491925-78491944	MsG0280011021.01.T01:CDS	35.0%
	GGTGATTATAGTTCAAGTAC+TGG	+	Chr2:78492165-78492184	MsG0280011021.01.T01:CDS	35.0%
	TGAACCAACAACTACTTCTA+GGG	+	Chr2:78492302-78492321	MsG0280011021.01.T01:CDS	35.0%
	TGGAATAGAAGAGAAAACCA+TGG	-	Chr2:78491382-78491401	None:intergenic	35.0%
	TGTAAATCATGTTGTTCAGC+TGG	-	Chr2:78492745-78492764	None:intergenic	35.0%
	TTAAGAAATGTTCCTGTTGG+TGG	+	Chr2:78491928-78491947	MsG0280011021.01.T01:CDS	35.0%
	TTGAACCAACAACTACTTCT+AGG	+	Chr2:78492301-78492320	MsG0280011021.01.T01:CDS	35.0%
!!	GATTATAGTTCAAGTACTGG+TGG	+	Chr2:78492168-78492187	MsG0280011021.01.T01:CDS	35.0%
!!!	AGTAGAGGTGTTACTCTTTT+TGG	-	Chr2:78491977-78491996	None:intergenic	35.0%
	ATCGTTTGCACTGCTAGAAA+AGG	+	Chr2:78492491-78492510	MsG0280011021.01.T01:three_prime_UTR	40.0%
	CAAGAGGAGTTGAAGTTGAA+TGG	-	Chr2:78492056-78492075	None:intergenic	40.0%
	CAAGTTGCACTATCTTCGAA+TGG	+	Chr2:78492763-78492782	MsG0280011021.01.T01:three_prime_UTR	40.0%
	CATCTCTTCAGAATCTGAAC+CGG	+	Chr2:78492115-78492134	MsG0280011021.01.T01:CDS	40.0%
	CATTCAACTTCAACTCCTCT+TGG	+	Chr2:78492054-78492073	MsG0280011021.01.T01:CDS	40.0%
	GTAACCCTAGAAGTAGTTGT+TGG	-	Chr2:78492309-78492328	None:intergenic	40.0%
	TACTACTTTGATGCCTGCAT+CGG	+	Chr2:78492326-78492345	MsG0280011021.01.T01:CDS	40.0%
	TCGGTTAAATCGGAACACAA+CGG	+	Chr2:78492345-78492364	MsG0280011021.01.T01:CDS	40.0%
	TCTTCGAATGGCGAAAATCA+AGG	+	Chr2:78492775-78492794	MsG0280011021.01.T01:three_prime_UTR	40.0%
	TGAAGTTCAAACTGGTCATC+AGG	+	Chr2:78491741-78491760	MsG0280011021.01.T01:CDS	40.0%
!	GACACTTTTGCAAGACATGT+AGG	+	Chr2:78491881-78491900	MsG0280011021.01.T01:CDS	40.0%
!	GGAAGCAACTGATGTTGATT+TGG	-	Chr2:78491634-78491653	None:intergenic	40.0%
!	TCATGGTCTTGCATCTTCTT+CGG	+	Chr2:78492446-78492465	MsG0280011021.01.T01:CDS	40.0%
!!	AAAAGTGTCTTGGTTGAGAC+AGG	-	Chr2:78491870-78491889	None:intergenic	40.0%
!!	CATGTCTTGCAAAAGTGTCT+TGG	-	Chr2:78491880-78491899	None:intergenic	40.0%
!!	TATAGTTCAAGTACTGGTGG+AGG	+	Chr2:78492171-78492190	MsG0280011021.01.T01:CDS	40.0%
	ACATGTTTCCAACACCGAAC+CGG	-	Chr2:78492137-78492156	None:intergenic	45.0%
	ATAATTGAGCCTGCACCATG+TGG	-	Chr2:78491676-78491695	None:intergenic	45.0%
	ATCCATCAAAGATGATGCCC+TGG	-	Chr2:78492701-78492720	None:intergenic	45.0%
	ATGGTGCAGGCTCAATTATC+AGG	+	Chr2:78491677-78491696	MsG0280011021.01.T01:CDS	45.0%
	CACTTCAAAGCTGTCTCTGA+AGG	-	Chr2:78491796-78491815	None:intergenic	45.0%
	CTTCAGAATCTGAACCGGTT+CGG	+	Chr2:78492120-78492139	MsG0280011021.01.T01:CDS	45.0%
	GCAAGACATGTAGGCGTTAT+TGG	+	Chr2:78491890-78491909	MsG0280011021.01.T01:CDS	45.0%
	GCAGCTCATGAAGTTCAAAC+TGG	+	Chr2:78491733-78491752	MsG0280011021.01.T01:CDS	45.0%
	GGGTGTAAGAATTCACCAAG+AGG	-	Chr2:78492072-78492091	None:intergenic	45.0%
	GTAGGCGTTATTGGACAAGA+GGG	+	Chr2:78491899-78491918	MsG0280011021.01.T01:CDS	45.0%
	GTTAAATCGGAACACAACGG+AGG	+	Chr2:78492348-78492367	MsG0280011021.01.T01:CDS	45.0%
	TAGGCGTTATTGGACAAGAG+GGG	+	Chr2:78491900-78491919	MsG0280011021.01.T01:CDS	45.0%
	TGTAGGCGTTATTGGACAAG+AGG	+	Chr2:78491898-78491917	MsG0280011021.01.T01:CDS	45.0%
	TGTTCCGATTTAACCGATGC+AGG	-	Chr2:78492342-78492361	None:intergenic	45.0%
!	AAGGTGGTGGTAACTTAGCT+TGG	-	Chr2:78491777-78491796	None:intergenic	45.0%
!	AGAAATGTTCCTGTTGGTGG+AGG	+	Chr2:78491931-78491950	MsG0280011021.01.T01:CDS	45.0%
!	ATCCAGGGCATCATCTTTGA+TGG	+	Chr2:78492696-78492715	MsG0280011021.01.T01:intron	45.0%
!	CTTACTTGCTGCCAATTGAG+AGG	-	Chr2:78491417-78491436	None:intergenic	45.0%
!	GAAATGTTCCTGTTGGTGGA+GGG	+	Chr2:78491932-78491951	MsG0280011021.01.T01:CDS	45.0%
!	TTCAAAGCTGTCTCTGAAGG+TGG	-	Chr2:78491793-78491812	None:intergenic	45.0%
!!	GATGCCTGCATCGGTTAAAT+CGG	+	Chr2:78492335-78492354	MsG0280011021.01.T01:CDS	45.0%
!!	GTGTTGGTTGATTCACAACG+AGG	-	Chr2:78491820-78491839	None:intergenic	45.0%
!!	TGGAGATTTTGAGGGAGTAG+AGG	-	Chr2:78491992-78492011	None:intergenic	45.0%
	AAATCGGAACACAACGGAGG+AGG	+	Chr2:78492351-78492370	MsG0280011021.01.T01:CDS	50.0%
	AAGGAGGAGTTGTGGATCAG+TGG	+	Chr2:78492196-78492215	MsG0280011021.01.T01:CDS	50.0%
	AGGCGTTATTGGACAAGAGG+GGG	+	Chr2:78491901-78491920	MsG0280011021.01.T01:CDS	50.0%
	CTATCCTCATCACAGCCACA+TGG	+	Chr2:78491658-78491677	MsG0280011021.01.T01:CDS	50.0%
	TGTGGCTGTGATGAGGATAG+TGG	-	Chr2:78491658-78491677	None:intergenic	50.0%
!	AAAGCTGTCTCTGAAGGTGG+TGG	-	Chr2:78491790-78491809	None:intergenic	50.0%
!	AGCTTGATCCGGTATCGAAC+CGG	-	Chr2:78491704-78491723	None:intergenic	50.0%
!!	AATCTGAACCGGTTCGGTGT+TGG	+	Chr2:78492126-78492145	MsG0280011021.01.T01:CDS	50.0%
!!	TCAAGTACTGGTGGAGGAGA+AGG	+	Chr2:78492177-78492196	MsG0280011021.01.T01:CDS	50.0%
	ACCGGATCAAGCTCAAGCTC+AGG	+	Chr2:78491711-78491730	MsG0280011021.01.T01:CDS	55.0%
	GCAGGCTCAATTATCAGGCC+CGG	+	Chr2:78491682-78491701	MsG0280011021.01.T01:CDS	55.0%
	GCCTGAGCTTGAGCTTGATC+CGG	-	Chr2:78491715-78491734	None:intergenic	55.0%
	TCATCACAGCCACATGGTGC+AGG	+	Chr2:78491664-78491683	MsG0280011021.01.T01:CDS	55.0%
	TGCACCATGTGGCTGTGATG+AGG	-	Chr2:78491665-78491684	None:intergenic	55.0%
	TGGAGGAGAAGGAGGAGTTG+TGG	+	Chr2:78492188-78492207	MsG0280011021.01.T01:CDS	55.0%
!	GCTTGATCCGGTATCGAACC+GGG	-	Chr2:78491703-78491722	None:intergenic	55.0%
!	GGCTGTGATGAGGATAGTGG+TGG	-	Chr2:78491655-78491674	None:intergenic	55.0%
!	TATCAGGCCCGGTTCGATAC+CGG	+	Chr2:78491693-78491712	MsG0280011021.01.T01:CDS	55.0%
!!	AGTACTGGTGGAGGAGAAGG+AGG	+	Chr2:78492180-78492199	MsG0280011021.01.T01:CDS	55.0%
	CTACGACACCCTCCACCAAC+AGG	-	Chr2:78491943-78491962	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	78491374	78493026	78491374	ID=MsG0280011021.01;Name=MsG0280011021.01
Chr2	mRNA	78491374	78493026	78491374	ID=MsG0280011021.01.T01;Parent=MsG0280011021.01;Name=MsG0280011021.01.T01;_AED=0.49;_eAED=0.49;_QI=7\|1\|1\|1\|0\|0\|3\|352\|302
Chr2	exon	78491374	78491431	78491374	ID=MsG0280011021.01.T01:exon:21265;Parent=MsG0280011021.01.T01
Chr2	exon	78491628	78492512	78491628	ID=MsG0280011021.01.T01:exon:21266;Parent=MsG0280011021.01.T01
Chr2	exon	78492702	78493026	78492702	ID=MsG0280011021.01.T01:exon:21267;Parent=MsG0280011021.01.T01
Chr2	five_prime_UTR	78491374	78491380	78491374	ID=MsG0280011021.01.T01:five_prime_utr;Parent=MsG0280011021.01.T01
Chr2	CDS	78491381	78491431	78491381	ID=MsG0280011021.01.T01:cds;Parent=MsG0280011021.01.T01
Chr2	CDS	78491628	78492485	78491628	ID=MsG0280011021.01.T01:cds;Parent=MsG0280011021.01.T01
Chr2	three_prime_UTR	78492486	78492512	78492486	ID=MsG0280011021.01.T01:three_prime_utr;Parent=MsG0280011021.01.T01
Chr2	three_prime_UTR	78492702	78493026	78492702	ID=MsG0280011021.01.T01:three_prime_utr;Parent=MsG0280011021.01.T01

Gene Sequence

>MsG0280011021.01.T01

ATGGTTTTCTCTTCTATTCCATCTTATTTAGATCCTCTCAATTGGCAGCAACAACCAAATCAACATCAGTTGCTTCCACCACTATCCTCATCACAGCCACATGGTGCAGGCTCAATTATCAGGCCCGGTTCGATACCGGATCAAGCTCAAGCTCAGGCAGCTCATGAAGTTCAAACTGGTCATCAGGTTCAAACTCACCAAGCTAAGTTACCACCACCTTCAGAGACAGCTTTGAAGTGTCCTCGTTGTGAATCAACCAACACAAAATTTTGTTACTACAACAACTATAACCTGTCTCAACCAAGACACTTTTGCAAGACATGTAGGCGTTATTGGACAAGAGGGGGTGCATTAAGAAATGTTCCTGTTGGTGGAGGGTGTCGTAGAAGCAAAAAGACCAAAAAGAGTAACACCTCTACTCCCTCAAAATCTCCAATATCAAATAGTAATGAGAAAGATTATTCAACAAGTGCAATCCATTCAACTTCAACTCCTCTTGGTGAATTCTTACACCCAACTAATAGACCTAATTACATGACATCTCTTCAGAATCTGAACCGGTTCGGTGTTGGAAACATGTTTCAAATTGGTGATTATAGTTCAAGTACTGGTGGAGGAGAAGGAGGAGTTGTGGATCAGTGGAGATTTCAGCAGTTTCCTTTCATGAATAATGGTTTTGATTCAAGTACTTCAAATGTTTCTTTCCCATTTCAAAGTGAAATTGTTGAACCAACAACTACTTCTAGGGTTACTACTTTGATGCCTGCATCGGTTAAATCGGAACACAACGGAGGAGGTTTTAATCTGCTTAGATCTCCAATGAATATGTCAGAGAATAACAACCATTACAATAATTCATGGACTGATTTTCATGGTCTTGCATCTTCTTCGGCTAGTCGTCTGTTATAA

Protein sequence

>MsG0280011021.01.T01

MVFSSIPSYLDPLNWQQQPNQHQLLPPLSSSQPHGAGSIIRPGSIPDQAQAQAAHEVQTGHQVQTHQAKLPPPSETALKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRSKKTKKSNTSTPSKSPISNSNEKDYSTSAIHSTSTPLGEFLHPTNRPNYMTSLQNLNRFGVGNMFQIGDYSSSTGGGEGGVVDQWRFQQFPFMNNGFDSSTSNVSFPFQSEIVEPTTTSRVTTLMPASVKSEHNGGGFNLLRSPMNMSENNNHYNNSWTDFHGLASSSASRLL*