Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011135.01.T01 | ACL36992.1 | 84.155 | 284 | 43 | 1 | 1 | 284 | 1 | 282 | 2.50E-175 | 495 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011135.01.T01 | P27054 | 73.946 | 261 | 61 | 3 | 25 | 284 | 16 | 270 | 1.19E-135 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011135.01.T01 | B8Y647 | 84.155 | 284 | 43 | 1 | 1 | 284 | 1 | 282 | 1.20e-175 | 495 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0280011135.01 | MsG0780039438.01 | 0.809321 | 2.004811e-50 | 1.173436e-47 |
| MsG0280011135.01 | MsG0780039964.01 | 0.812972 | 3.239236e-51 | 2.088684e-48 |
| MsG0280009623.01 | MsG0280011135.01 | 0.820989 | 5.124986e-53 | 4.118163e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011135.01.T01 | MTR_2g099470 | 83.803 | 284 | 44 | 1 | 1 | 284 | 1 | 282 | 4.21e-179 | 494 |
| MsG0280011135.01.T01 | MTR_2g099465 | 74.205 | 283 | 43 | 3 | 3 | 284 | 1 | 254 | 3.48e-152 | 426 |
| MsG0280011135.01.T01 | MTR_3g118390 | 35.514 | 321 | 151 | 9 | 6 | 284 | 54 | 360 | 3.50e-57 | 188 |
| MsG0280011135.01.T01 | MTR_8g074330 | 37.847 | 288 | 141 | 6 | 32 | 284 | 29 | 313 | 1.42e-53 | 177 |
| MsG0280011135.01.T01 | MTR_8g074350 | 33.968 | 315 | 162 | 8 | 12 | 284 | 3 | 313 | 1.42e-51 | 172 |
| MsG0280011135.01.T01 | MTR_8g074335 | 36.429 | 280 | 145 | 8 | 32 | 284 | 29 | 302 | 4.90e-46 | 157 |
| MsG0280011135.01.T01 | MTR_7g110780 | 35.865 | 237 | 116 | 5 | 83 | 284 | 36 | 271 | 3.13e-45 | 154 |
| MsG0280011135.01.T01 | MTR_2g099450 | 61.667 | 120 | 17 | 2 | 164 | 283 | 84 | 174 | 2.01e-38 | 133 |
| MsG0280011135.01.T01 | MTR_2g099450 | 76.316 | 76 | 18 | 0 | 1 | 76 | 1 | 76 | 4.92e-35 | 124 |
| MsG0280011135.01.T01 | MTR_2g034680 | 28.631 | 241 | 127 | 7 | 88 | 284 | 62 | 301 | 1.69e-20 | 89.7 |
| MsG0280011135.01.T01 | MTR_1g105535 | 28.755 | 233 | 120 | 6 | 93 | 284 | 80 | 307 | 2.39e-18 | 84.0 |
| MsG0280011135.01.T01 | MTR_7g021640 | 26.506 | 249 | 138 | 8 | 80 | 284 | 57 | 304 | 3.33e-17 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011135.01.T01 | AT3G54420 | 65.480 | 281 | 85 | 3 | 8 | 284 | 1 | 273 | 1.58e-132 | 377 |
| MsG0280011135.01.T01 | AT2G43590 | 55.642 | 257 | 102 | 4 | 28 | 284 | 20 | 264 | 1.56e-101 | 298 |
| MsG0280011135.01.T01 | AT2G43580 | 53.307 | 257 | 109 | 3 | 28 | 284 | 20 | 265 | 6.74e-95 | 281 |
| MsG0280011135.01.T01 | AT2G43570 | 49.104 | 279 | 122 | 7 | 15 | 284 | 10 | 277 | 4.45e-81 | 246 |
| MsG0280011135.01.T01 | AT2G43610 | 46.209 | 277 | 130 | 7 | 18 | 284 | 14 | 281 | 4.04e-80 | 244 |
| MsG0280011135.01.T01 | AT2G43620 | 43.793 | 290 | 140 | 8 | 8 | 284 | 4 | 283 | 7.90e-80 | 243 |
| MsG0280011135.01.T01 | AT3G47540 | 43.805 | 226 | 102 | 5 | 60 | 284 | 13 | 214 | 5.73e-58 | 185 |
| MsG0280011135.01.T01 | AT1G56680 | 40.357 | 280 | 145 | 12 | 16 | 284 | 12 | 280 | 1.88e-56 | 183 |
| MsG0280011135.01.T01 | AT1G56680 | 40.357 | 280 | 145 | 12 | 16 | 284 | 35 | 303 | 5.11e-56 | 183 |
| MsG0280011135.01.T01 | AT3G47540 | 43.243 | 222 | 101 | 5 | 60 | 280 | 13 | 210 | 5.90e-54 | 177 |
| MsG0280011135.01.T01 | AT2G43600 | 37.676 | 284 | 156 | 11 | 11 | 284 | 1 | 273 | 3.26e-53 | 174 |
| MsG0280011135.01.T01 | AT2G43600 | 37.544 | 285 | 157 | 11 | 10 | 284 | 21 | 294 | 7.82e-53 | 174 |
| MsG0280011135.01.T01 | AT3G12500 | 35.915 | 284 | 140 | 8 | 36 | 284 | 44 | 320 | 5.41e-50 | 168 |
| MsG0280011135.01.T01 | AT1G02360 | 36.719 | 256 | 125 | 6 | 65 | 284 | 11 | 265 | 1.49e-46 | 157 |
| MsG0280011135.01.T01 | AT1G02360 | 36.719 | 256 | 125 | 6 | 65 | 284 | 63 | 317 | 3.57e-46 | 158 |
| MsG0280011135.01.T01 | AT1G02360 | 36.719 | 256 | 125 | 6 | 65 | 284 | 57 | 311 | 3.81e-46 | 157 |
| MsG0280011135.01.T01 | AT4G01700 | 36.820 | 239 | 115 | 5 | 81 | 284 | 36 | 273 | 3.51e-44 | 151 |
| MsG0280011135.01.T01 | AT1G05850 | 27.897 | 233 | 122 | 7 | 93 | 284 | 77 | 304 | 5.18e-20 | 88.6 |
| MsG0280011135.01.T01 | AT1G05850 | 27.897 | 233 | 122 | 7 | 93 | 284 | 77 | 304 | 5.18e-20 | 88.6 |
| MsG0280011135.01.T01 | AT3G16920 | 25.911 | 247 | 137 | 8 | 83 | 284 | 68 | 313 | 1.72e-16 | 78.6 |
| MsG0280011135.01.T01 | AT3G16920 | 25.911 | 247 | 137 | 8 | 83 | 284 | 92 | 337 | 1.93e-16 | 79.0 |
Find 75 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTCAATGGCCACTGTTTC+AGG | 0.189231 | 2:+80029361 | None:intergenic |
| CGGCCATAGTATCCTTTGTT+TGG | 0.219949 | 2:+80029460 | None:intergenic |
| CTTTGGAAGGGTAGGTTCTT+TGG | 0.221782 | 2:-80030423 | MsG0280011135.01.T01:CDS |
| GGTTTATGTTGTAGCCAAAT+TGG | 0.251663 | 2:-80030674 | MsG0280011135.01.T01:CDS |
| GGCCATAGTATCCTTTGTTT+GGG | 0.257115 | 2:+80029461 | None:intergenic |
| TGTTACCACAATACCCAATT+TGG | 0.264709 | 2:+80030660 | None:intergenic |
| ACATTCAAGTCGACCATTAA+TGG | 0.286036 | 2:+80029252 | None:intergenic |
| TAGGAGTACTAGGTGAAATT+TGG | 0.332760 | 2:+80030588 | None:intergenic |
| TCAAGACAGCATTATGGTAT+TGG | 0.355700 | 2:-80029327 | MsG0280011135.01.T01:CDS |
| TGGTAACAGTGATGTATATT+GGG | 0.375523 | 2:-80030645 | MsG0280011135.01.T01:CDS |
| TCGACCATTAATGGCTCTAA+TGG | 0.384552 | 2:+80029261 | None:intergenic |
| AGCAGCTGCAATCTCGCGTT+TGG | 0.388676 | 2:+80030394 | None:intergenic |
| ATACCATAATGCTGTCTTGA+AGG | 0.394568 | 2:+80029330 | None:intergenic |
| GTGGACCGATTCAATTATCT+TGG | 0.404093 | 2:-80029438 | MsG0280011135.01.T01:CDS |
| GCCACATTAGCATCATTGTT+AGG | 0.406889 | 2:+80030563 | None:intergenic |
| GTGGTAACAGTGATGTATAT+TGG | 0.418280 | 2:-80030646 | MsG0280011135.01.T01:CDS |
| GCAACCATTAGAGCCATTAA+TGG | 0.421305 | 2:-80029265 | MsG0280011135.01.T01:CDS |
| CTCAATTCTTACAATCACTT+TGG | 0.422791 | 2:-80030440 | MsG0280011135.01.T01:CDS |
| CACTCAATATTGCAGTGAGT+TGG | 0.433160 | 2:-80029185 | MsG0280011135.01.T01:CDS |
| TGTCCTTCAAGACAGCATTA+TGG | 0.433269 | 2:-80029333 | MsG0280011135.01.T01:CDS |
| AAAGTGATTGTAAGAATTGA+GGG | 0.434235 | 2:+80030442 | None:intergenic |
| GTTTATGTTGTAGCCAAATT+GGG | 0.435368 | 2:-80030673 | MsG0280011135.01.T01:CDS |
| TGCTAACCCAACCACAGTTC+AGG | 0.441129 | 2:-80029224 | MsG0280011135.01.T01:CDS |
| CAAAGTGATTGTAAGAATTG+AGG | 0.446788 | 2:+80030441 | None:intergenic |
| AACTTTAACTACGGAGCAGC+AGG | 0.447880 | 2:-80029415 | MsG0280011135.01.T01:CDS |
| ACTCAATATTGCAGTGAGTT+GGG | 0.451957 | 2:-80029184 | MsG0280011135.01.T01:CDS |
| CTCCAATAATATGACTATGA+TGG | 0.457401 | 2:-80030801 | None:intergenic |
| TCCAATAATATGACTATGAT+GGG | 0.471348 | 2:-80030800 | None:intergenic |
| ATTCTTACAATCACTTTGGA+AGG | 0.473563 | 2:-80030436 | MsG0280011135.01.T01:CDS |
| AGTGAGTTGGGTGTTGCTCC+AGG | 0.477330 | 2:-80029172 | MsG0280011135.01.T01:CDS |
| TATTGAAGAAATCTTGTGTA+AGG | 0.478357 | 2:+80030534 | None:intergenic |
| CAAGCTGATTCTAGTTGTGC+AGG | 0.493089 | 2:-80030500 | MsG0280011135.01.T01:CDS |
| GCCCCAAACAAAGGATACTA+TGG | 0.494369 | 2:-80029463 | MsG0280011135.01.T01:CDS |
| TTATCTTGGAACTTTAACTA+CGG | 0.495322 | 2:-80029424 | MsG0280011135.01.T01:CDS |
| CCGCATAACAAGGACCTTGT+TGG | 0.499874 | 2:+80030612 | None:intergenic |
| GGTATCATGAACCAAGGGTT+TGG | 0.500850 | 2:-80029289 | MsG0280011135.01.T01:CDS |
| TAATGGTTGCACCAAACCCT+TGG | 0.501803 | 2:+80029278 | None:intergenic |
| TTGTTAGGACTAGGAGTACT+AGG | 0.502713 | 2:+80030578 | None:intergenic |
| AAGTTCCAAGATAATTGAAT+CGG | 0.505654 | 2:+80029433 | None:intergenic |
| AGTGATGTATATTGGGGCAC+AGG | 0.505819 | 2:-80030638 | MsG0280011135.01.T01:CDS |
| GAAGGACACTACAGGGTCAA+TGG | 0.517300 | 2:+80029348 | None:intergenic |
| TATCCTTTGTTTGGGGCACA+CGG | 0.517532 | 2:+80029469 | None:intergenic |
| AGAGAATGGTGGTGCATCAA+AGG | 0.519548 | 2:-80029521 | MsG0280011135.01.T01:CDS |
| CACGAGCCTGAACTGTGGTT+GGG | 0.522620 | 2:+80029218 | None:intergenic |
| CAACAAGGTCCTTGTTATGC+GGG | 0.525104 | 2:-80030611 | MsG0280011135.01.T01:CDS |
| ACACGAGCCTGAACTGTGGT+TGG | 0.529501 | 2:+80029217 | None:intergenic |
| TACAATCACTTTGGAAGGGT+AGG | 0.537983 | 2:-80030431 | MsG0280011135.01.T01:CDS |
| GCTGTCTTGAAGGACACTAC+AGG | 0.540931 | 2:+80029340 | None:intergenic |
| AACAAAGGATACTATGGCCG+TGG | 0.543466 | 2:-80029457 | MsG0280011135.01.T01:CDS |
| CAAAATTGTGTGTGTGAGGA+AGG | 0.544322 | 2:-80030695 | MsG0280011135.01.T01:CDS |
| CCAACAAGGTCCTTGTTATG+CGG | 0.570087 | 2:-80030612 | MsG0280011135.01.T01:CDS |
| GAAATTTGGCCCGCATAACA+AGG | 0.574082 | 2:+80030602 | None:intergenic |
| TAACTACGGAGCAGCAGGAA+AGG | 0.575841 | 2:-80029410 | MsG0280011135.01.T01:CDS |
| TGGGGCACAGGGTGCCAACA+AGG | 0.579156 | 2:-80030626 | MsG0280011135.01.T01:CDS |
| TTAGCATCATTGTTAGGACT+AGG | 0.587347 | 2:+80030569 | None:intergenic |
| CTGTCTTGAAGGACACTACA+GGG | 0.595470 | 2:+80029341 | None:intergenic |
| TTCTTACAATCACTTTGGAA+GGG | 0.596157 | 2:-80030435 | MsG0280011135.01.T01:CDS |
| AAGATAATTGAATCGGTCCA+CGG | 0.596870 | 2:+80029440 | None:intergenic |
| ATTGAACTCTCCTGAAACAG+TGG | 0.597631 | 2:-80029371 | MsG0280011135.01.T01:CDS |
| ATCCTTTGTTTGGGGCACAC+GGG | 0.603144 | 2:+80029470 | None:intergenic |
| TACCCGTGTGCCCCAAACAA+AGG | 0.604745 | 2:-80029472 | MsG0280011135.01.T01:CDS |
| TCCTAACAATGATGCTAATG+TGG | 0.607513 | 2:-80030564 | MsG0280011135.01.T01:CDS |
| TGTAGCCAAATTGGGTATTG+TGG | 0.610691 | 2:-80030665 | MsG0280011135.01.T01:CDS |
| GCCATAGTATCCTTTGTTTG+GGG | 0.623486 | 2:+80029462 | None:intergenic |
| TAGCAAGTAAGCTTATCACC+TGG | 0.628192 | 2:+80029154 | None:intergenic |
| TGCTCAAAATTGTGTGTGTG+AGG | 0.638766 | 2:-80030699 | MsG0280011135.01.T01:CDS |
| TGCTATATAGAAGAGAATGG+TGG | 0.645905 | 2:-80029532 | MsG0280011135.01.T01:CDS |
| GTGATGTATATTGGGGCACA+GGG | 0.653187 | 2:-80030637 | MsG0280011135.01.T01:CDS |
| GTGCACGGTATCATGAACCA+AGG | 0.656589 | 2:-80029295 | MsG0280011135.01.T01:CDS |
| TGCACGGTATCATGAACCAA+GGG | 0.666438 | 2:-80029294 | MsG0280011135.01.T01:CDS |
| AATGGTCGACTTGAATGTGA+TGG | 0.677633 | 2:-80029247 | MsG0280011135.01.T01:CDS |
| GGAGCAGCAGGAAAGGACAA+TGG | 0.693238 | 2:-80029403 | MsG0280011135.01.T01:CDS |
| ATCAACACGAGCCTGAACTG+TGG | 0.714459 | 2:+80029213 | None:intergenic |
| TATTGGATGAATAATGTGCA+CGG | 0.728548 | 2:-80029310 | MsG0280011135.01.T01:CDS |
| GGTAACAGTGATGTATATTG+GGG | 0.747964 | 2:-80030644 | MsG0280011135.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTAACAAATTTTAGAA+TGG | - | Chr2:80029667-80029686 | MsG0280011135.01.T01:intron | 10.0% |
| !! | TACAATTTCAATGAATTAAA+CGG | - | Chr2:80029870-80029889 | MsG0280011135.01.T01:intron | 15.0% |
| !! | TTAATTCATTGAAATTGTAA+AGG | + | Chr2:80029869-80029888 | None:intergenic | 15.0% |
| ! | AAAGTGATTGTAAGAATTGA+GGG | + | Chr2:80029505-80029524 | None:intergenic | 25.0% |
| ! | AACCATGATCATGATAAAAA+AGG | + | Chr2:80029211-80029230 | None:intergenic | 25.0% |
| ! | AAGTTCCAAGATAATTGAAT+CGG | + | Chr2:80030514-80030533 | None:intergenic | 25.0% |
| ! | ACCATGATCATGATAAAAAA+GGG | + | Chr2:80029210-80029229 | None:intergenic | 25.0% |
| ! | ATTCTCTTCAATACCAATTT+GGG | + | Chr2:80030243-80030262 | None:intergenic | 25.0% |
| ! | TATTGAAGAAATCTTGTGTA+AGG | + | Chr2:80029413-80029432 | None:intergenic | 25.0% |
| ! | TTATCTTGGAACTTTAACTA+CGG | - | Chr2:80030520-80030539 | MsG0280011135.01.T01:CDS | 25.0% |
| !!! | AATATTGATTCTGTTGAAGT+TGG | + | Chr2:80030022-80030041 | None:intergenic | 25.0% |
| !!! | TTTTGCTATATAGAAGAGAA+TGG | - | Chr2:80030409-80030428 | MsG0280011135.01.T01:CDS | 25.0% |
| AACAAGAACTGAACTAAATG+AGG | + | Chr2:80030103-80030122 | None:intergenic | 30.0% | |
| AAGTTTAAACCCATTTGTGT+TGG | + | Chr2:80030323-80030342 | None:intergenic | 30.0% | |
| ATGTTGAGAAACTGAGAAAA+TGG | + | Chr2:80030357-80030376 | None:intergenic | 30.0% | |
| ATTCTTACAATCACTTTGGA+AGG | - | Chr2:80029508-80029527 | MsG0280011135.01.T01:CDS | 30.0% | |
| CAAAGTGATTGTAAGAATTG+AGG | + | Chr2:80029506-80029525 | None:intergenic | 30.0% | |
| CGTATAAGCTATATATGGTT+TGG | - | Chr2:80030127-80030146 | MsG0280011135.01.T01:intron | 30.0% | |
| CTCAATTCTTACAATCACTT+TGG | - | Chr2:80029504-80029523 | MsG0280011135.01.T01:CDS | 30.0% | |
| GATTCTCTTCAATACCAATT+TGG | + | Chr2:80030244-80030263 | None:intergenic | 30.0% | |
| GTTTATGTTGTAGCCAAATT+GGG | - | Chr2:80029271-80029290 | MsG0280011135.01.T01:CDS | 30.0% | |
| TATTGGATGAATAATGTGCA+CGG | - | Chr2:80030634-80030653 | MsG0280011135.01.T01:CDS | 30.0% | |
| TCTAGCGTATAAGCTATATA+TGG | - | Chr2:80030122-80030141 | MsG0280011135.01.T01:intron | 30.0% | |
| TGAGATCAAAGCCTATTTAA+CGG | + | Chr2:80029901-80029920 | None:intergenic | 30.0% | |
| TGGTAACAGTGATGTATATT+GGG | - | Chr2:80029299-80029318 | MsG0280011135.01.T01:CDS | 30.0% | |
| ! | TTCTTACAATCACTTTGGAA+GGG | - | Chr2:80029509-80029528 | MsG0280011135.01.T01:CDS | 30.0% |
| !!! | ACCCTTTTTTATCATGATCA+TGG | - | Chr2:80029206-80029225 | MsG0280011135.01.T01:CDS | 30.0% |
| AAACGGCAAATCCGTTAAAT+AGG | - | Chr2:80029887-80029906 | MsG0280011135.01.T01:intron | 35.0% | |
| AAGATAATTGAATCGGTCCA+CGG | + | Chr2:80030507-80030526 | None:intergenic | 35.0% | |
| ACATTCAAGTCGACCATTAA+TGG | + | Chr2:80030695-80030714 | None:intergenic | 35.0% | |
| ACTCAATATTGCAGTGAGTT+GGG | - | Chr2:80030760-80030779 | MsG0280011135.01.T01:CDS | 35.0% | |
| ATACCATAATGCTGTCTTGA+AGG | + | Chr2:80030617-80030636 | None:intergenic | 35.0% | |
| GGTAACAGTGATGTATATTG+GGG | - | Chr2:80029300-80029319 | MsG0280011135.01.T01:CDS | 35.0% | |
| GGTTTATGTTGTAGCCAAAT+TGG | - | Chr2:80029270-80029289 | MsG0280011135.01.T01:CDS | 35.0% | |
| GTGGTAACAGTGATGTATAT+TGG | - | Chr2:80029298-80029317 | MsG0280011135.01.T01:CDS | 35.0% | |
| TCAAGACAGCATTATGGTAT+TGG | - | Chr2:80030617-80030636 | MsG0280011135.01.T01:CDS | 35.0% | |
| TCATCTTTGAGCTAGCATTT+GGG | + | Chr2:80029925-80029944 | None:intergenic | 35.0% | |
| TCCTAACAATGATGCTAATG+TGG | - | Chr2:80029380-80029399 | MsG0280011135.01.T01:CDS | 35.0% | |
| TCTTCAATACCAATTTGGGT+GGG | + | Chr2:80030239-80030258 | None:intergenic | 35.0% | |
| TGCTATATAGAAGAGAATGG+TGG | - | Chr2:80030412-80030431 | MsG0280011135.01.T01:CDS | 35.0% | |
| TGTTACCACAATACCCAATT+TGG | + | Chr2:80029287-80029306 | None:intergenic | 35.0% | |
| TTAGCATCATTGTTAGGACT+AGG | + | Chr2:80029378-80029397 | None:intergenic | 35.0% | |
| ! | AAGCTATATATGGTTTGGCT+AGG | - | Chr2:80030132-80030151 | MsG0280011135.01.T01:intron | 35.0% |
| ! | TTTTGAGCACTAACACTTTC+TGG | + | Chr2:80029234-80029253 | None:intergenic | 35.0% |
| !! | TAGGAGTACTAGGTGAAATT+TGG | + | Chr2:80029359-80029378 | None:intergenic | 35.0% |
| ACCACAAGACCAACACAAAT+GGG | - | Chr2:80030311-80030330 | MsG0280011135.01.T01:intron | 40.0% | |
| ATTGAACTCTCCTGAAACAG+TGG | - | Chr2:80030573-80030592 | MsG0280011135.01.T01:CDS | 40.0% | |
| CAAAATTGTGTGTGTGAGGA+AGG | - | Chr2:80029249-80029268 | MsG0280011135.01.T01:CDS | 40.0% | |
| CACTCAATATTGCAGTGAGT+TGG | - | Chr2:80030759-80030778 | MsG0280011135.01.T01:CDS | 40.0% | |
| CTAAATTAGCCCACCCAAAT+TGG | - | Chr2:80030227-80030246 | MsG0280011135.01.T01:intron | 40.0% | |
| CTCATCTTTGAGCTAGCATT+TGG | + | Chr2:80029926-80029945 | None:intergenic | 40.0% | |
| CTCTTCAATACCAATTTGGG+TGG | + | Chr2:80030240-80030259 | None:intergenic | 40.0% | |
| CTTTGATCAGCATTTCAGCT+TGG | - | Chr2:80030051-80030070 | MsG0280011135.01.T01:intron | 40.0% | |
| GCAACCATTAGAGCCATTAA+TGG | - | Chr2:80030679-80030698 | MsG0280011135.01.T01:CDS | 40.0% | |
| GCCACATTAGCATCATTGTT+AGG | + | Chr2:80029384-80029403 | None:intergenic | 40.0% | |
| TACCACAAGACCAACACAAA+TGG | - | Chr2:80030310-80030329 | MsG0280011135.01.T01:intron | 40.0% | |
| TAGCAAGTAAGCTTATCACC+TGG | + | Chr2:80030793-80030812 | None:intergenic | 40.0% | |
| TGAGAATGTGCTCCTCTTTA+AGG | + | Chr2:80030277-80030296 | None:intergenic | 40.0% | |
| TGCTCAAAATTGTGTGTGTG+AGG | - | Chr2:80029245-80029264 | MsG0280011135.01.T01:CDS | 40.0% | |
| TGTCCTTCAAGACAGCATTA+TGG | - | Chr2:80030611-80030630 | MsG0280011135.01.T01:CDS | 40.0% | |
| ! | GCCATAGTATCCTTTGTTTG+GGG | + | Chr2:80030485-80030504 | None:intergenic | 40.0% |
| ! | GGCCATAGTATCCTTTGTTT+GGG | + | Chr2:80030486-80030505 | None:intergenic | 40.0% |
| ! | GTGGACCGATTCAATTATCT+TGG | - | Chr2:80030506-80030525 | MsG0280011135.01.T01:CDS | 40.0% |
| ! | TACAATCACTTTGGAAGGGT+AGG | - | Chr2:80029513-80029532 | MsG0280011135.01.T01:CDS | 40.0% |
| ! | TGTAGCCAAATTGGGTATTG+TGG | - | Chr2:80029279-80029298 | MsG0280011135.01.T01:CDS | 40.0% |
| ! | TTAAAGAGGAGCACATTCTC+AGG | - | Chr2:80030276-80030295 | MsG0280011135.01.T01:intron | 40.0% |
| !! | AATGGTCGACTTGAATGTGA+TGG | - | Chr2:80030697-80030716 | MsG0280011135.01.T01:CDS | 40.0% |
| !! | TCGACCATTAATGGCTCTAA+TGG | + | Chr2:80030686-80030705 | None:intergenic | 40.0% |
| !! | TTGTGTTGGTCTTGTGGTAT+TGG | + | Chr2:80030309-80030328 | None:intergenic | 40.0% |
| !! | TTGTTAGGACTAGGAGTACT+AGG | + | Chr2:80029369-80029388 | None:intergenic | 40.0% |
| !!! | GGAAAGGACAATGGTTTTGA+TGG | - | Chr2:80030550-80030569 | MsG0280011135.01.T01:CDS | 40.0% |
| AACAAAGGATACTATGGCCG+TGG | - | Chr2:80030487-80030506 | MsG0280011135.01.T01:CDS | 45.0% | |
| AACTTTAACTACGGAGCAGC+AGG | - | Chr2:80030529-80030548 | MsG0280011135.01.T01:CDS | 45.0% | |
| AGTGATGTATATTGGGGCAC+AGG | - | Chr2:80029306-80029325 | MsG0280011135.01.T01:CDS | 45.0% | |
| CGGCCATAGTATCCTTTGTT+TGG | + | Chr2:80030487-80030506 | None:intergenic | 45.0% | |
| CTCGCAAACTTGAGCAATGT+GGG | - | Chr2:80029976-80029995 | MsG0280011135.01.T01:intron | 45.0% | |
| CTGTCTTGAAGGACACTACA+GGG | + | Chr2:80030606-80030625 | None:intergenic | 45.0% | |
| GAAATTTGGCCCGCATAACA+AGG | + | Chr2:80029345-80029364 | None:intergenic | 45.0% | |
| GCCCCAAACAAAGGATACTA+TGG | - | Chr2:80030481-80030500 | MsG0280011135.01.T01:CDS | 45.0% | |
| GGTATCATGAACCAAGGGTT+TGG | - | Chr2:80030655-80030674 | MsG0280011135.01.T01:CDS | 45.0% | |
| GTGATGTATATTGGGGCACA+GGG | - | Chr2:80029307-80029326 | MsG0280011135.01.T01:CDS | 45.0% | |
| TAATGGTTGCACCAAACCCT+TGG | + | Chr2:80030669-80030688 | None:intergenic | 45.0% | |
| TCGAACCTGAGACCTTAAAG+AGG | - | Chr2:80030262-80030281 | MsG0280011135.01.T01:intron | 45.0% | |
| TGCACGGTATCATGAACCAA+GGG | - | Chr2:80030650-80030669 | MsG0280011135.01.T01:CDS | 45.0% | |
| ! | AGAGAATGGTGGTGCATCAA+AGG | - | Chr2:80030423-80030442 | MsG0280011135.01.T01:CDS | 45.0% |
| ! | CAACAAGGTCCTTGTTATGC+GGG | - | Chr2:80029333-80029352 | MsG0280011135.01.T01:CDS | 45.0% |
| ! | CAAGCTGATTCTAGTTGTGC+AGG | - | Chr2:80029444-80029463 | MsG0280011135.01.T01:CDS | 45.0% |
| ! | CCAACAAGGTCCTTGTTATG+CGG | - | Chr2:80029332-80029351 | MsG0280011135.01.T01:CDS | 45.0% |
| ! | CTTTGGAAGGGTAGGTTCTT+TGG | - | Chr2:80029521-80029540 | MsG0280011135.01.T01:CDS | 45.0% |
| ! | TATCCTTTGTTTGGGGCACA+CGG | + | Chr2:80030478-80030497 | None:intergenic | 45.0% |
| !! | ACCCATTTGTGTTGGTCTTG+TGG | + | Chr2:80030315-80030334 | None:intergenic | 45.0% |
| ATCAACACGAGCCTGAACTG+TGG | + | Chr2:80030734-80030753 | None:intergenic | 50.0% | |
| CCGCATAACAAGGACCTTGT+TGG | + | Chr2:80029335-80029354 | None:intergenic | 50.0% | |
| GAAGGACACTACAGGGTCAA+TGG | + | Chr2:80030599-80030618 | None:intergenic | 50.0% | |
| GCTCGCAAACTTGAGCAATG+TGG | - | Chr2:80029975-80029994 | MsG0280011135.01.T01:intron | 50.0% | |
| GCTGTCTTGAAGGACACTAC+AGG | + | Chr2:80030607-80030626 | None:intergenic | 50.0% | |
| GTGCACGGTATCATGAACCA+AGG | - | Chr2:80030649-80030668 | MsG0280011135.01.T01:CDS | 50.0% | |
| TAACTACGGAGCAGCAGGAA+AGG | - | Chr2:80030534-80030553 | MsG0280011135.01.T01:CDS | 50.0% | |
| TGCTAACCCAACCACAGTTC+AGG | - | Chr2:80030720-80030739 | MsG0280011135.01.T01:CDS | 50.0% | |
| ! | ATCCTTTGTTTGGGGCACAC+GGG | + | Chr2:80030477-80030496 | None:intergenic | 50.0% |
| !! | GTGCTCCTCTTTAAGGTCTC+AGG | + | Chr2:80030270-80030289 | None:intergenic | 50.0% |
| ACACGAGCCTGAACTGTGGT+TGG | + | Chr2:80030730-80030749 | None:intergenic | 55.0% | |
| AGCAGCTGCAATCTCGCGTT+TGG | + | Chr2:80029553-80029572 | None:intergenic | 55.0% | |
| CACGAGCCTGAACTGTGGTT+GGG | + | Chr2:80030729-80030748 | None:intergenic | 55.0% | |
| GGAGCAGCAGGAAAGGACAA+TGG | - | Chr2:80030541-80030560 | MsG0280011135.01.T01:CDS | 55.0% | |
| GGGTCAATGGCCACTGTTTC+AGG | + | Chr2:80030586-80030605 | None:intergenic | 55.0% | |
| TACCCGTGTGCCCCAAACAA+AGG | - | Chr2:80030472-80030491 | MsG0280011135.01.T01:CDS | 55.0% | |
| !! | AGTGAGTTGGGTGTTGCTCC+AGG | - | Chr2:80030772-80030791 | MsG0280011135.01.T01:CDS | 55.0% |
| ! | TGGGGCACAGGGTGCCAACA+AGG | - | Chr2:80029318-80029337 | MsG0280011135.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 80029153 | 80030813 | 80029153 | ID=MsG0280011135.01;Name=MsG0280011135.01 |
| Chr2 | mRNA | 80029153 | 80030813 | 80029153 | ID=MsG0280011135.01.T01;Parent=MsG0280011135.01;Name=MsG0280011135.01.T01;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|1|1|2|0|284 |
| Chr2 | exon | 80030366 | 80030813 | 80030366 | ID=MsG0280011135.01.T01:exon:21513;Parent=MsG0280011135.01.T01 |
| Chr2 | exon | 80029153 | 80029559 | 80029153 | ID=MsG0280011135.01.T01:exon:21512;Parent=MsG0280011135.01.T01 |
| Chr2 | CDS | 80030366 | 80030813 | 80030366 | ID=MsG0280011135.01.T01:cds;Parent=MsG0280011135.01.T01 |
| Chr2 | CDS | 80029153 | 80029559 | 80029153 | ID=MsG0280011135.01.T01:cds;Parent=MsG0280011135.01.T01 |
| Gene Sequence |
| Protein sequence |
