AlfalfaGEDB | MsG0280009623.01

M. sativa cultivar ZhongmuNo.1 / MsG0280009623.01

KEGG: -
GO: -
PFAM: PF01453

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009623.01.T01	XP_013464289.1	88.55	131	13	1	1	131	358	486	2.11E-71	241

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009623.01.T01	Q7FAZ2	40.164	122	65	1	1	122	132	245	5.72E-23	96.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009623.01.T01	A0A072V8H5	88.550	131	13	1	1	131	358	486	1.01e-71	241

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000977.01	MsG0280009623.01	0.811211	7.843016e-51	4.825919e-48
MsG0180001590.01	MsG0280009623.01	0.809663	1.693209e-50	1.000129e-47
MsG0280006918.01	MsG0280009623.01	0.805986	1.024032e-49	5.494765e-47
MsG0280006919.01	MsG0280009623.01	0.810162	1.322208e-50	7.912323e-48
MsG0280009623.01	MsG0280009624.01	0.818151	2.275903e-52	1.690165e-49
MsG0280009623.01	MsG0280011135.01	0.820989	5.124986e-53	4.118163e-50
MsG0280009623.01	MsG0480022535.01	0.821298	4.350045e-53	3.525133e-50
MsG0280009623.01	MsG0480022572.01	0.807702	4.443769e-50	2.492090e-47
MsG0280009623.01	MsG0580024340.01	0.805596	1.236650e-49	6.569036e-47
MsG0280009623.01	MsG0580029182.01	0.801076	1.067721e-48	5.052953e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009623.01.T01	MTR_2g067980	88.550	131	13	1	1	131	358	486	2.56e-75	241
MsG0280009623.01.T01	MTR_2g067990	77.863	131	27	1	1	131	335	463	9.71e-63	207
MsG0280009623.01.T01	MTR_2g068650	73.171	123	25	2	9	131	90	204	3.96e-51	173
MsG0280009623.01.T01	MTR_2g067970	53.333	135	54	6	1	128	295	427	2.34e-31	117
MsG0280009623.01.T01	MTR_8g011430	43.333	120	65	1	1	120	133	249	1.45e-26	103
MsG0280009623.01.T01	MTR_8g011370	42.188	128	67	2	2	129	130	250	2.66e-25	100
MsG0280009623.01.T01	MTR_8g011440	44.094	127	67	2	1	126	128	251	3.18e-25	100
MsG0280009623.01.T01	MTR_8g011440	42.308	130	64	2	1	129	916	1035	7.21e-24	96.3
MsG0280009623.01.T01	MTR_8g011410	39.416	137	76	2	2	138	130	259	1.17e-24	98.6
MsG0280009623.01.T01	MTR_8g011377	41.441	111	62	1	19	129	345	452	1.02e-20	87.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009623.01.T01	AT5G60900	37.594	133	71	3	3	128	138	265	7.04e-20	83.6

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Find 24 sgRNAs with CRISPR-Local

Find 29 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTCATCTACAAGAGGA+TGG	0.517032	2:+55506278	MsG0280009623.01.T01:CDS
AACTTCATCTACAAGAGGAT+GGG	0.538380	2:+55506279	MsG0280009623.01.T01:CDS
AATCAAGTAATGGTGTTGAA+TGG	0.470273	2:+55506206	MsG0280009623.01.T01:CDS
AATGGTCTAATGAATGATGA+TGG	0.522419	2:+55506107	None:intergenic
AATTGCTTGGCAAATTTATA+AGG	0.241578	2:-55506316	None:intergenic
ATGGTCATAGAAGCGTAGTA+AGG	0.551021	2:-55506350	None:intergenic
ATTAGTACCGAATCAAGTAA+TGG	0.616385	2:+55506196	MsG0280009623.01.T01:CDS
ATTCTTAGAATCACCACTAA+TGG	0.329308	2:-55506369	None:intergenic
CAAAGCAACTATTAATTTGA+TGG	0.318775	2:+55506516	MsG0280009623.01.T01:CDS
CGTTCAACTTCTCACAAGGA+AGG	0.524847	2:+55506252	MsG0280009623.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATACATTGCAAAAAAAGGAG+GGG	+	Chr2:55506439-55506458	MsG0280009623.01.T01:CDS	30.0%
ATTCTTAGAATCACCACTAA+TGG	-	Chr2:55506372-55506391	None:intergenic	30.0%
GTTTAAACTTCATCTACAAG+AGG	+	Chr2:55506274-55506293	MsG0280009623.01.T01:CDS	30.0%
TCTAAGAATCAAACAAACGT+TGG	+	Chr2:55506383-55506402	MsG0280009623.01.T01:CDS	30.0%
TTCAACACCATTACTTGATT+CGG	-	Chr2:55506206-55506225	None:intergenic	30.0%
TTTCTATCAGCAATCCAAAT+GGG	+	Chr2:55506468-55506487	MsG0280009623.01.T01:CDS	30.0%
AAACTTCATCTACAAGAGGA+TGG	+	Chr2:55506278-55506297	MsG0280009623.01.T01:CDS	35.0%
AACTTCATCTACAAGAGGAT+GGG	+	Chr2:55506279-55506298	MsG0280009623.01.T01:CDS	35.0%
CGTTTGATATTTGACGAATC+AGG	+	Chr2:55506410-55506429	MsG0280009623.01.T01:CDS	35.0%
TTCTATCAGCAATCCAAATG+GGG	+	Chr2:55506469-55506488	MsG0280009623.01.T01:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	55506116	55506535	55506116	ID=MsG0280009623.01;Name=MsG0280009623.01
Chr2	mRNA	55506116	55506535	55506116	ID=MsG0280009623.01.T01;Parent=MsG0280009623.01;Name=MsG0280009623.01.T01;_AED=0.47;_eAED=0.47;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|139
Chr2	exon	55506116	55506535	55506116	ID=MsG0280009623.01.T01:exon:5984;Parent=MsG0280009623.01.T01
Chr2	CDS	55506116	55506535	55506116	ID=MsG0280009623.01.T01:cds;Parent=MsG0280009623.01.T01

Gene Sequence

>MsG0280009623.01.T01

ATGAATGATGATGGAAACTTTCAATTGCGAGACAAAAATAATGAGACATTATGGGATAGTTTCAGTCATCCTACTGACACATTAGTACCGAATCAAGTAATGGTGTTGAATGGAAATCTTTCTTCACGACAAGGATCGTTCAACTTCTCACAAGGAAGGTTTAAACTTCATCTACAAGAGGATGGGAATCTTGTGCTCAACCTTATAAATTTGCCAAGCAATTACAGTTACAGGCCTTACTACGCTTCTATGACCATTAGTGGTGATTCTAAGAATCAAACAAACGTTGGTCAGCGTTTGATATTTGACGAATCAGGTTTCTTATACATTGCAAAAAAAGGAGGGGATAACTTTTCTATCAGCAATCCAAATGGGGCATTCTCAACGGATGATTCTACTACAAAGCAACTATTAATTTGA

Protein sequence

>MsG0280009623.01.T01

MNDDGNFQLRDKNNETLWDSFSHPTDTLVPNQVMVLNGNLSSRQGSFNFSQGRFKLHLQEDGNLVLNLINLPSNYSYRPYYASMTISGDSKNQTNVGQRLIFDESGFLYIAKKGGDNFSISNPNGAFSTDDSTTKQLLI*