AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011142.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011142.01.T01 MTR_2g099510 98.694 536 3 1 1 536 1 532 0.0 1099
MsG0280011142.01.T01 MTR_4g125700 80.325 493 94 2 42 534 19 508 0.0 822
MsG0280011142.01.T01 MTR_5g098840 63.492 63 7 1 474 536 14 60 1.07e-16 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011142.01.T01 AT4G29840 79.962 529 96 4 3 530 2 521 0.0 868
MsG0280011142.01.T01 AT1G72810 81.673 502 88 3 31 530 14 513 0.0 848

Find 150 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGAATGGTAATCAATTT+TGG 0.124455 2:-80079618 None:intergenic
ACGCAGGTCAAGGCTGATTT+TGG 0.134513 2:+80079680 MsG0280011142.01.T01:CDS
GGTGGGAGGGGTTGGGGTTG+GGG 0.145060 2:-80078322 None:intergenic
AGGGGTTGGGGTTGGGGTTG+GGG 0.154573 2:-80078316 None:intergenic
GAGGGGTTGGGGTTGGGGTT+GGG 0.164737 2:-80078317 None:intergenic
TGGTGGGAGGGGTTGGGGTT+GGG 0.191888 2:-80078323 None:intergenic
TTGGGGTTGGGGTGGGAGTA+GGG 0.236345 2:-80078305 None:intergenic
GGAGGGGTTGGGGTTGGGGT+TGG 0.237411 2:-80078318 None:intergenic
GTTGGGGTTGGGGTGGGAGT+AGG 0.240255 2:-80078306 None:intergenic
ATCGGCGGGGCGGCGGGTGG+TGG 0.245006 2:-80078340 None:intergenic
GGTTGGGGTTGGGGTTGGGG+TGG 0.246268 2:-80078313 None:intergenic
GTCGGGGTGGAAAGAGTTTA+AGG 0.248477 2:+80079310 MsG0280011142.01.T01:CDS
TGCTGAATTGCCGATTTATT+TGG 0.263474 2:+80079052 MsG0280011142.01.T01:CDS
GGTTGGGGTGGGAGTAGGGG+TGG 0.284774 2:-80078301 None:intergenic
TTCAAAGGGTATCAAGGATT+TGG 0.294481 2:+80079634 MsG0280011142.01.T01:CDS
GGTAAAACCACATGGCCTTA+TGG 0.295390 2:+80078585 MsG0280011142.01.T01:CDS
GCGGGTGGTGGGAGGGGTTG+GGG 0.298807 2:-80078328 None:intergenic
GGCGGGTGGTGGGAGGGGTT+GGG 0.300572 2:-80078329 None:intergenic
TGGGGTTGGGGTGGGAGTAG+GGG 0.302919 2:-80078304 None:intergenic
GGTGTTGGTTGTGCTTCAAC+TGG 0.304605 2:+80078852 MsG0280011142.01.T01:CDS
CGGCGGGTGGTGGGAGGGGT+TGG 0.308192 2:-80078330 None:intergenic
GCGTTGGAGGATTTGCAAAT+TGG 0.316134 2:-80079661 None:intergenic
TTGGGGTGGGAGTAGGGGTG+GGG 0.316256 2:-80078299 None:intergenic
GGCCTTATGGGTCTGGTGTT+TGG 0.321677 2:+80078598 MsG0280011142.01.T01:CDS
GTGGTGGGAGGGGTTGGGGT+TGG 0.322547 2:-80078324 None:intergenic
GCGGGGCGGCGGGTGGTGGG+AGG 0.322833 2:-80078336 None:intergenic
GTTGGGGTTGGGGTTGGGGT+GGG 0.323210 2:-80078312 None:intergenic
TAGGATTTCCATTGCTCAAT+TGG 0.333009 2:+80078947 MsG0280011142.01.T01:CDS
GTTGGGGTGGGAGTAGGGGT+GGG 0.333051 2:-80078300 None:intergenic
TGGGGTGGGAGTAGGGGTGG+GGG 0.335660 2:-80078298 None:intergenic
TTTCATATGTGTAGAGAGTT+AGG 0.350019 2:+80079215 MsG0280011142.01.T01:CDS
GGCGTTGAAAGGGACGTATT+TGG 0.351343 2:-80078418 None:intergenic
AGAAGAATAGGGTTTGGTTT+TGG 0.354152 2:-80078199 None:intergenic
GTAAAACCACATGGCCTTAT+GGG 0.366663 2:+80078586 MsG0280011142.01.T01:CDS
CGAATTTCTTCAAGGCGGTT+AGG 0.368031 2:-80078524 None:intergenic
CTTAATAGTTTGAGGCTTGA+AGG 0.374972 2:+80079083 MsG0280011142.01.T01:CDS
GCCGGATTGGGTTATTGTGC+CGG 0.378797 2:+80079154 MsG0280011142.01.T01:CDS
TCCAAGGCTTGTTTGTGCTC+AGG 0.379190 2:+80079253 MsG0280011142.01.T01:CDS
ATAATGAAATGAGTGGGTTT+TGG 0.388979 2:-80078234 None:intergenic
GGGGCGGCGGGTGGTGGGAG+GGG 0.390024 2:-80078334 None:intergenic
AGAAATTCGATGGAGCTTAC+TGG 0.395894 2:+80078538 MsG0280011142.01.T01:CDS
CGAATTCACTTAATAGTTTG+AGG 0.396707 2:+80079075 MsG0280011142.01.T01:CDS
AGCTACTGAGGAGGAATTGA+TGG 0.402724 2:+80079439 MsG0280011142.01.T01:CDS
TGATTTGGAAAGAGAAGAAT+AGG 0.403935 2:-80078211 None:intergenic
TTCTAGGCATGAGTGATTTG+TGG 0.406934 2:+80078724 MsG0280011142.01.T01:CDS
TTCATCGGCGGGGCGGCGGG+TGG 0.409521 2:-80078343 None:intergenic
GGATACTTCAGCTGCTTTGT+CGG 0.410282 2:+80078875 MsG0280011142.01.T01:CDS
TGATTGGCAGGTGCCGGATT+GGG 0.410364 2:+80079142 MsG0280011142.01.T01:CDS
CGGGGCGGCGGGTGGTGGGA+GGG 0.411799 2:-80078335 None:intergenic
TCGGCTTATTGTGCATCGGC+GGG 0.412501 2:+80078894 MsG0280011142.01.T01:CDS
ATTGTGCCGGGTGGGAATCT+TGG 0.418313 2:+80079167 MsG0280011142.01.T01:CDS
TTGATTGGCAGGTGCCGGAT+TGG 0.419456 2:+80079141 MsG0280011142.01.T01:CDS
ACAGCTCTATCAATTGAAAC+TGG 0.419682 2:-80079380 None:intergenic
TTTGCATCTGCTATTCAGAT+TGG 0.423112 2:+80079353 MsG0280011142.01.T01:CDS
CAAGGCTCCCAAGTATCATT+AGG 0.423208 2:+80079739 MsG0280011142.01.T01:CDS
GGAAAGAGAAGAATAGGGTT+TGG 0.428580 2:-80078205 None:intergenic
TTTGCAGCAGTTTGATTGGC+AGG 0.429434 2:+80079130 MsG0280011142.01.T01:CDS
AAAATGAACCGTCCGGTTGT+TGG 0.435659 2:+80078831 MsG0280011142.01.T01:CDS
AGTGAATTCGCCAAATAAAT+CGG 0.437589 2:-80079062 None:intergenic
ACCACATGGCCTTATGGGTC+TGG 0.437858 2:+80078591 MsG0280011142.01.T01:CDS
CATTGTGGTATTAGTCATAC+TGG 0.441014 2:+80078753 MsG0280011142.01.T01:CDS
AATCCTTGATACCCTTTGAA+TGG 0.443204 2:-80079631 None:intergenic
GTCTGGTGTTTGGAGCAAAA+AGG 0.445183 2:+80078608 MsG0280011142.01.T01:CDS
GCAGTTTGATTGGCAGGTGC+CGG 0.451224 2:+80079136 MsG0280011142.01.T01:CDS
TCTAGGCATGAGTGATTTGT+GGG 0.454132 2:+80078725 MsG0280011142.01.T01:CDS
AGCCTTGCTCTGCAAATACT+TGG 0.461128 2:-80079723 None:intergenic
TCGGCGGGGCGGCGGGTGGT+GGG 0.461693 2:-80078339 None:intergenic
CCGGATTGGGTTATTGTGCC+GGG 0.461799 2:+80079155 MsG0280011142.01.T01:CDS
GCCTGAGCACAAACAAGCCT+TGG 0.465307 2:-80079254 None:intergenic
GAGAGTTAGGTCTTGTGGAT+AGG 0.465728 2:+80079228 MsG0280011142.01.T01:CDS
AACCGTCCGGTTGTTGGTGT+TGG 0.466461 2:+80078837 MsG0280011142.01.T01:CDS
CAAAATTGATTACCATTCAA+AGG 0.469250 2:+80079619 MsG0280011142.01.T01:CDS
GCACAACCAACACCAACAAC+CGG 0.474226 2:-80078843 None:intergenic
TTGGTTCAACCGATTGCAAA+TGG 0.475273 2:+80078966 MsG0280011142.01.T01:CDS
AGTGCTAACCTAATGATACT+TGG 0.476218 2:-80079747 None:intergenic
TCAGCCTTGACCTGCGTTGG+AGG 0.480759 2:-80079674 None:intergenic
TTACCATTCAAAGGGTATCA+AGG 0.485071 2:+80079628 MsG0280011142.01.T01:CDS
CCCGGCACAATAACCCAATC+CGG 0.490446 2:-80079155 None:intergenic
GTGTTGGTTGTGCTTCAACT+GGG 0.492084 2:+80078853 MsG0280011142.01.T01:CDS
AAAATTGATTACCATTCAAA+GGG 0.494352 2:+80079620 MsG0280011142.01.T01:CDS
GAGTAGGATTCGGTGGAAGA+TGG 0.498644 2:-80078444 None:intergenic
GAGGCTTGAAGGACAGAAAA+CGG 0.498672 2:+80079094 MsG0280011142.01.T01:CDS
GTGTAGAGAGTTAGGTCTTG+TGG 0.508929 2:+80079223 MsG0280011142.01.T01:CDS
GATTTGGAAAGAGAAGAATA+GGG 0.513485 2:-80078210 None:intergenic
ATGGCTCAAGCTGATTCGAC+CGG 0.514433 2:+80079467 MsG0280011142.01.T01:CDS
ACAAAAGCACCATTTGCAAT+CGG 0.517264 2:-80078975 None:intergenic
GTCCAAGTATTTGCAGAGCA+AGG 0.518614 2:+80079721 MsG0280011142.01.T01:CDS
CAGAGATGTTGAAGAAGCCA+TGG 0.520492 2:-80078148 None:intergenic
AAATCAGCCTTGACCTGCGT+TGG 0.524134 2:-80079677 None:intergenic
GAAGATGGATCGGCGTTGAA+AGG 0.525459 2:-80078429 None:intergenic
ATCGTCTACCGATCTCAATC+CGG 0.526263 2:+80078477 MsG0280011142.01.T01:CDS
ATATCATCATCATCGATCTC+AGG 0.529156 2:-80078642 None:intergenic
GAAGATCGCCGGATTGAGAT+CGG 0.530542 2:-80078485 None:intergenic
TTTGGCGGAGAAGAGATGTT+GGG 0.532378 2:-80078400 None:intergenic
CATGCTTTGAAGAACTGTAA+TGG 0.534935 2:+80079404 MsG0280011142.01.T01:CDS
AGCTCCATCGAATTTCTTCA+AGG 0.536992 2:-80078532 None:intergenic
GTCGGCTTATTGTGCATCGG+CGG 0.539966 2:+80078893 MsG0280011142.01.T01:CDS
AAGATGGATCGGCGTTGAAA+GGG 0.545633 2:-80078428 None:intergenic
GTCTTGTGGATAGGATTCCA+AGG 0.548006 2:+80079237 MsG0280011142.01.T01:CDS
ATTTGGCGGAGAAGAGATGT+TGG 0.549146 2:-80078401 None:intergenic
CTCCAAACACCAGACCCATA+AGG 0.549390 2:-80078600 None:intergenic
TGACTGCTTTGTTTAAACTC+AGG 0.552870 2:+80079522 MsG0280011142.01.T01:CDS
GCAATGGAAATCCTATTAGC+AGG 0.552872 2:-80078939 None:intergenic
GGAGGAATTGATGGATGCTA+TGG 0.553309 2:+80079448 MsG0280011142.01.T01:CDS
GTTGAAAGGGACGTATTTGG+CGG 0.553553 2:-80078415 None:intergenic
GTGCTAACCTAATGATACTT+GGG 0.557771 2:-80079746 None:intergenic
ATTGGGTTATTGTGCCGGGT+GGG 0.557813 2:+80079159 MsG0280011142.01.T01:CDS
AAATCCTCCAACGCAGGTCA+AGG 0.562280 2:+80079670 MsG0280011142.01.T01:CDS
TGGAAATCCTATTAGCAGGC+AGG 0.565624 2:-80078935 None:intergenic
GAAAGAGTTTAAGGCGGTGA+GGG 0.575255 2:+80079319 MsG0280011142.01.T01:CDS
GACGATCTCGTCGAGAGAGT+AGG 0.576757 2:-80078460 None:intergenic
CTCGTCGAGAGAGTAGGATT+CGG 0.578989 2:-80078454 None:intergenic
TGGCTCAAGCTGATTCGACC+GGG 0.580351 2:+80079468 MsG0280011142.01.T01:CDS
GATTGGGTTATTGTGCCGGG+TGG 0.585816 2:+80079158 MsG0280011142.01.T01:CDS
TACCGACACGTGAATCGAAG+AGG 0.586300 2:-80078566 None:intergenic
CTGCACGTCGAGAAGATCGC+CGG 0.589935 2:-80078496 None:intergenic
ATTTGCAAATCCTCCAACGC+AGG 0.590396 2:+80079664 MsG0280011142.01.T01:CDS
CGGTTGAACCAATTGAGCAA+TGG 0.595434 2:-80078955 None:intergenic
TGTTGGTTGTGCTTCAACTG+GGG 0.599269 2:+80078854 MsG0280011142.01.T01:CDS
GATTTGTGGGTTAAGCATTG+TGG 0.599614 2:+80078738 MsG0280011142.01.T01:CDS
TTGTTTAAACTCAGGAATAG+CGG 0.600270 2:+80079530 MsG0280011142.01.T01:CDS
ACCGCCTTGAAGAAATTCGA+TGG 0.600387 2:+80078528 MsG0280011142.01.T01:CDS
TTTGTCGGCTTATTGTGCAT+CGG 0.606634 2:+80078890 MsG0280011142.01.T01:CDS
AACCTCTTCGATTCACGTGT+CGG 0.607379 2:+80078564 MsG0280011142.01.T01:CDS
GTCGAGAGAGTAGGATTCGG+TGG 0.607650 2:-80078451 None:intergenic
GGATTCGGTGGAAGATGGAT+CGG 0.609494 2:-80078439 None:intergenic
ATGTTTACTTGTCCTCACAC+TGG 0.621411 2:+80079491 MsG0280011142.01.T01:CDS
GAGTTATTAAGCCTACTGAC+AGG 0.622434 2:+80079552 MsG0280011142.01.T01:CDS
AACCAACACCAACAACCGGA+CGG 0.627839 2:-80078839 None:intergenic
AGATTTGATAATGAAATGAG+TGG 0.631842 2:-80078241 None:intergenic
GACTTAAAATACAAATACAA+AGG 0.635201 2:-80079290 None:intergenic
GCCTACTGACAGGACTGTTG+TGG 0.639586 2:+80079562 MsG0280011142.01.T01:CDS
CACGTGTCGGTAAAACCACA+TGG 0.639982 2:+80078577 MsG0280011142.01.T01:CDS
GAACTGTAATGGTATTGTTG+AGG 0.642607 2:+80079415 MsG0280011142.01.T01:CDS
GTGAGGACAAGTAAACATCC+CGG 0.650868 2:-80079486 None:intergenic
GTCAAAGCAACACCAGTGTG+AGG 0.652045 2:-80079503 None:intergenic
TATTGTTGAGGAAGCTACTG+AGG 0.655242 2:+80079427 MsG0280011142.01.T01:CDS
GCAGGCAGGAAAACAATCGA+AGG 0.664509 2:-80078921 None:intergenic
TGTTGAGGAAGCTACTGAGG+AGG 0.665091 2:+80079430 MsG0280011142.01.T01:CDS
TCCATCGAATTTCTTCAAGG+CGG 0.667768 2:-80078529 None:intergenic
GATTTGATAATGAAATGAGT+GGG 0.668411 2:-80078240 None:intergenic
GGAAAGAGTTTAAGGCGGTG+AGG 0.673860 2:+80079318 MsG0280011142.01.T01:CDS
CGGCTTATTGTGCATCGGCG+GGG 0.675426 2:+80078895 MsG0280011142.01.T01:CDS
ACCACAACAGTCCTGTCAGT+AGG 0.686265 2:-80079563 None:intergenic
GTGTATGCAGTTGATAAGAG+AGG 0.695143 2:+80079025 MsG0280011142.01.T01:CDS
TTGTGGTGAGTACTGCACAT+GGG 0.697881 2:+80079579 MsG0280011142.01.T01:CDS
ATATTTCCAAGATTCCCACC+CGG 0.698663 2:-80079173 None:intergenic
GTTGTGGTGAGTACTGCACA+TGG 0.707948 2:+80079578 MsG0280011142.01.T01:CDS
ACCAGACCCATAAGGCCATG+TGG 0.708008 2:-80078592 None:intergenic
GGGGTGGAAAGAGTTTAAGG+CGG 0.774189 2:+80079313 MsG0280011142.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTATGCTTTTTATAA+AGG + Chr2:80079191-80079210 MsG0280011142.01.T01:CDS 10.0%
!!! ATATTTATGCTTTTTATAAA+GGG + Chr2:80079192-80079211 MsG0280011142.01.T01:CDS 10.0%
!!! TTTGTATTTGTATTTTAAGT+CGG + Chr2:80079292-80079311 MsG0280011142.01.T01:CDS 15.0%
!! AAAATTGATTACCATTCAAA+GGG + Chr2:80079620-80079639 MsG0280011142.01.T01:CDS 20.0%
!! GACTTAAAATACAAATACAA+AGG - Chr2:80079293-80079312 None:intergenic 20.0%
!!! AAGGTAATTCTAATCTTTTT+TGG + Chr2:80078679-80078698 MsG0280011142.01.T01:CDS 20.0%
!!! AGGTAATTCTAATCTTTTTT+GGG + Chr2:80078680-80078699 MsG0280011142.01.T01:CDS 20.0%
!!! TTGTATTTGTATTTTAAGTC+GGG + Chr2:80079293-80079312 MsG0280011142.01.T01:CDS 20.0%
! CAAAATTGATTACCATTCAA+AGG + Chr2:80079619-80079638 MsG0280011142.01.T01:CDS 25.0%
!! CTTTGAATGGTAATCAATTT+TGG - Chr2:80079621-80079640 None:intergenic 25.0%
!!! AGATTTGATAATGAAATGAG+TGG - Chr2:80078244-80078263 None:intergenic 25.0%
!!! GATTTGATAATGAAATGAGT+GGG - Chr2:80078243-80078262 None:intergenic 25.0%
!!! TGTATTTGTATTTTAAGTCG+GGG + Chr2:80079294-80079313 MsG0280011142.01.T01:CDS 25.0%
AGTGAATTCGCCAAATAAAT+CGG - Chr2:80079065-80079084 None:intergenic 30.0%
CGAATTCACTTAATAGTTTG+AGG + Chr2:80079075-80079094 MsG0280011142.01.T01:CDS 30.0%
GATTTGGAAAGAGAAGAATA+GGG - Chr2:80078213-80078232 None:intergenic 30.0%
TTGTTTAAACTCAGGAATAG+CGG + Chr2:80079530-80079549 MsG0280011142.01.T01:CDS 30.0%
TTTCATATGTGTAGAGAGTT+AGG + Chr2:80079215-80079234 MsG0280011142.01.T01:CDS 30.0%
! GATATTGTTAGTGCTTTTGA+AGG + Chr2:80078660-80078679 MsG0280011142.01.T01:CDS 30.0%
! TGATTTGGAAAGAGAAGAAT+AGG - Chr2:80078214-80078233 None:intergenic 30.0%
!! ATAATGAAATGAGTGGGTTT+TGG - Chr2:80078237-80078256 None:intergenic 30.0%
!! TAGTCATACTGGTAGTTTTA+AGG + Chr2:80078764-80078783 MsG0280011142.01.T01:CDS 30.0%
!!! AGCATTGATACTGATTTTGA+TGG + Chr2:80079002-80079021 MsG0280011142.01.T01:CDS 30.0%
!!! GCATTGATACTGATTTTGAT+GGG + Chr2:80079003-80079022 MsG0280011142.01.T01:CDS 30.0%
AATCCTTGATACCCTTTGAA+TGG - Chr2:80079634-80079653 None:intergenic 35.0%
ACAGCTCTATCAATTGAAAC+TGG - Chr2:80079383-80079402 None:intergenic 35.0%
ATATCATCATCATCGATCTC+AGG - Chr2:80078645-80078664 None:intergenic 35.0%
CATTGTGGTATTAGTCATAC+TGG + Chr2:80078753-80078772 MsG0280011142.01.T01:CDS 35.0%
GAACTGTAATGGTATTGTTG+AGG + Chr2:80079415-80079434 MsG0280011142.01.T01:CDS 35.0%
TAGGATTTCCATTGCTCAAT+TGG + Chr2:80078947-80078966 MsG0280011142.01.T01:CDS 35.0%
TTTGCATCTGCTATTCAGAT+TGG + Chr2:80079353-80079372 MsG0280011142.01.T01:CDS 35.0%
! AGATTTTGCAGCAGTTTGAT+TGG + Chr2:80079126-80079145 MsG0280011142.01.T01:CDS 35.0%
! CTTAATAGTTTGAGGCTTGA+AGG + Chr2:80079083-80079102 MsG0280011142.01.T01:CDS 35.0%
! TGTTTGGAGCAAAAAGGAAT+GGG + Chr2:80078614-80078633 MsG0280011142.01.T01:CDS 35.0%
!! ACAAAAGCACCATTTGCAAT+CGG - Chr2:80078978-80078997 None:intergenic 35.0%
!! AGAAGAATAGGGTTTGGTTT+TGG - Chr2:80078202-80078221 None:intergenic 35.0%
!! ATTTGTATTTTAAGTCGGGG+TGG + Chr2:80079297-80079316 MsG0280011142.01.T01:CDS 35.0%
!! CATGCTTTGAAGAACTGTAA+TGG + Chr2:80079404-80079423 MsG0280011142.01.T01:CDS 35.0%
!! TGACTGCTTTGTTTAAACTC+AGG + Chr2:80079522-80079541 MsG0280011142.01.T01:CDS 35.0%
!! TGCTGAATTGCCGATTTATT+TGG + Chr2:80079052-80079071 MsG0280011142.01.T01:CDS 35.0%
!! TTACCATTCAAAGGGTATCA+AGG + Chr2:80079628-80079647 MsG0280011142.01.T01:CDS 35.0%
!! TTCAAAGGGTATCAAGGATT+TGG + Chr2:80079634-80079653 MsG0280011142.01.T01:CDS 35.0%
!!! ACTGGTAGTTTTAAGGATCT+TGG + Chr2:80078771-80078790 MsG0280011142.01.T01:CDS 35.0%
AGAAATTCGATGGAGCTTAC+TGG + Chr2:80078538-80078557 MsG0280011142.01.T01:CDS 40.0%
AGCTCCATCGAATTTCTTCA+AGG - Chr2:80078535-80078554 None:intergenic 40.0%
ATATTTCCAAGATTCCCACC+CGG - Chr2:80079176-80079195 None:intergenic 40.0%
ATGTTTACTTGTCCTCACAC+TGG + Chr2:80079491-80079510 MsG0280011142.01.T01:CDS 40.0%
GAGTTATTAAGCCTACTGAC+AGG + Chr2:80079552-80079571 MsG0280011142.01.T01:CDS 40.0%
GCAATGGAAATCCTATTAGC+AGG - Chr2:80078942-80078961 None:intergenic 40.0%
GGAAAGAGAAGAATAGGGTT+TGG - Chr2:80078208-80078227 None:intergenic 40.0%
TATTGTTGAGGAAGCTACTG+AGG + Chr2:80079427-80079446 MsG0280011142.01.T01:CDS 40.0%
TCCATCGAATTTCTTCAAGG+CGG - Chr2:80078532-80078551 None:intergenic 40.0%
TTCTAGGCATGAGTGATTTG+TGG + Chr2:80078724-80078743 MsG0280011142.01.T01:CDS 40.0%
TTGGTTCAACCGATTGCAAA+TGG + Chr2:80078966-80078985 MsG0280011142.01.T01:CDS 40.0%
! GATTTGTGGGTTAAGCATTG+TGG + Chr2:80078738-80078757 MsG0280011142.01.T01:CDS 40.0%
! GTGTTTGGAGCAAAAAGGAA+TGG + Chr2:80078613-80078632 MsG0280011142.01.T01:CDS 40.0%
! TCTAGGCATGAGTGATTTGT+GGG + Chr2:80078725-80078744 MsG0280011142.01.T01:CDS 40.0%
! TTGTTTTCCTGCCTGCTAAT+AGG + Chr2:80078928-80078947 MsG0280011142.01.T01:CDS 40.0%
!! ATGAGTGGGTTTTGGTGATT+TGG - Chr2:80078229-80078248 None:intergenic 40.0%
!! CGTTTTGGCAAACAGTTTCT+AGG + Chr2:80078708-80078727 MsG0280011142.01.T01:CDS 40.0%
!! GTAAAACCACATGGCCTTAT+GGG + Chr2:80078586-80078605 MsG0280011142.01.T01:CDS 40.0%
!! GTGTATGCAGTTGATAAGAG+AGG + Chr2:80079025-80079044 MsG0280011142.01.T01:CDS 40.0%
!! TTTGTCGGCTTATTGTGCAT+CGG + Chr2:80078890-80078909 MsG0280011142.01.T01:CDS 40.0%
AAAATGAACCGTCCGGTTGT+TGG + Chr2:80078831-80078850 MsG0280011142.01.T01:CDS 45.0%
AACCTCTTCGATTCACGTGT+CGG + Chr2:80078564-80078583 MsG0280011142.01.T01:CDS 45.0%
ACCGCCTTGAAGAAATTCGA+TGG + Chr2:80078528-80078547 MsG0280011142.01.T01:CDS 45.0%
AGCCTTGCTCTGCAAATACT+TGG - Chr2:80079726-80079745 None:intergenic 45.0%
AGCTACTGAGGAGGAATTGA+TGG + Chr2:80079439-80079458 MsG0280011142.01.T01:CDS 45.0%
ATCGTCTACCGATCTCAATC+CGG + Chr2:80078477-80078496 MsG0280011142.01.T01:CDS 45.0%
ATTTGCAAATCCTCCAACGC+AGG + Chr2:80079664-80079683 MsG0280011142.01.T01:CDS 45.0%
ATTTGGCGGAGAAGAGATGT+TGG - Chr2:80078404-80078423 None:intergenic 45.0%
CGAATTTCTTCAAGGCGGTT+AGG - Chr2:80078527-80078546 None:intergenic 45.0%
CGGTTGAACCAATTGAGCAA+TGG - Chr2:80078958-80078977 None:intergenic 45.0%
CTTGCGAAAAATGAACCGTC+CGG + Chr2:80078824-80078843 MsG0280011142.01.T01:CDS 45.0%
GAGGCTTGAAGGACAGAAAA+CGG + Chr2:80079094-80079113 MsG0280011142.01.T01:CDS 45.0%
GCGTTGGAGGATTTGCAAAT+TGG - Chr2:80079664-80079683 None:intergenic 45.0%
GTCCAAGTATTTGCAGAGCA+AGG + Chr2:80079721-80079740 MsG0280011142.01.T01:CDS 45.0%
GTCTTGTGGATAGGATTCCA+AGG + Chr2:80079237-80079256 MsG0280011142.01.T01:CDS 45.0%
GTGAGGACAAGTAAACATCC+CGG - Chr2:80079489-80079508 None:intergenic 45.0%
GTGTAGAGAGTTAGGTCTTG+TGG + Chr2:80079223-80079242 MsG0280011142.01.T01:CDS 45.0%
GTTGAAAGGGACGTATTTGG+CGG - Chr2:80078418-80078437 None:intergenic 45.0%
TGGAAATCCTATTAGCAGGC+AGG - Chr2:80078938-80078957 None:intergenic 45.0%
TTTGCAGCAGTTTGATTGGC+AGG + Chr2:80079130-80079149 MsG0280011142.01.T01:CDS 45.0%
TTTGGCGGAGAAGAGATGTT+GGG - Chr2:80078403-80078422 None:intergenic 45.0%
! AAGATGGATCGGCGTTGAAA+GGG - Chr2:80078431-80078450 None:intergenic 45.0%
! GAAAGAGTTTAAGGCGGTGA+GGG + Chr2:80079319-80079338 MsG0280011142.01.T01:CDS 45.0%
! GAGAGTTAGGTCTTGTGGAT+AGG + Chr2:80079228-80079247 MsG0280011142.01.T01:CDS 45.0%
! GGAGGAATTGATGGATGCTA+TGG + Chr2:80079448-80079467 MsG0280011142.01.T01:CDS 45.0%
! GGATACTTCAGCTGCTTTGT+CGG + Chr2:80078875-80078894 MsG0280011142.01.T01:CDS 45.0%
! GGTAAAACCACATGGCCTTA+TGG + Chr2:80078585-80078604 MsG0280011142.01.T01:CDS 45.0%
! GTCTGGTGTTTGGAGCAAAA+AGG + Chr2:80078608-80078627 MsG0280011142.01.T01:CDS 45.0%
! TGTTGGTTGTGCTTCAACTG+GGG + Chr2:80078854-80078873 MsG0280011142.01.T01:CDS 45.0%
! TTCGTCGCGGATGTTTTCAT+CGG - Chr2:80078361-80078380 None:intergenic 45.0%
! TTGTGGTGAGTACTGCACAT+GGG + Chr2:80079579-80079598 MsG0280011142.01.T01:CDS 45.0%
!! GACGGTTCATTTTTCGCAAG+CGG - Chr2:80078824-80078843 None:intergenic 45.0%
!! GGCTGATTTTGGGTCTGTTA+TGG + Chr2:80079691-80079710 MsG0280011142.01.T01:CDS 45.0%
!! GTGTTGGTTGTGCTTCAACT+GGG + Chr2:80078853-80078872 MsG0280011142.01.T01:CDS 45.0%
!!! AGGGTTTGGTTTTGGTGTTG+AGG - Chr2:80078194-80078213 None:intergenic 45.0%
!!! CTTTTTTGGGCTGAGCGTTT+TGG + Chr2:80078693-80078712 MsG0280011142.01.T01:CDS 45.0%
!!! GGGGGTGTTGTTTTGAGTAA+GGG - Chr2:80078283-80078302 None:intergenic 45.0%
!!! GGGGTGTTGTTTTGAGTAAG+GGG - Chr2:80078282-80078301 None:intergenic 45.0%
!!! GGGTGTTGTTTTGAGTAAGG+GGG - Chr2:80078281-80078300 None:intergenic 45.0%
!!! GGGTTTGGTTTTGGTGTTGA+GGG - Chr2:80078193-80078212 None:intergenic 45.0%
!!! GTTTTGGTGTTGAGGGAGAA+AGG - Chr2:80078186-80078205 None:intergenic 45.0%
!!! TGGGGGTGTTGTTTTGAGTA+AGG - Chr2:80078284-80078303 None:intergenic 45.0%
!!! TTGTTTTGAGTAAGGGGGTG+TGG - Chr2:80078276-80078295 None:intergenic 45.0%
AAATCAGCCTTGACCTGCGT+TGG - Chr2:80079680-80079699 None:intergenic 50.0%
AAATCCTCCAACGCAGGTCA+AGG + Chr2:80079670-80079689 MsG0280011142.01.T01:CDS 50.0%
AACCAACACCAACAACCGGA+CGG - Chr2:80078842-80078861 None:intergenic 50.0%
ACCACAACAGTCCTGTCAGT+AGG - Chr2:80079566-80079585 None:intergenic 50.0%
ATTGGGTTATTGTGCCGGGT+GGG + Chr2:80079159-80079178 MsG0280011142.01.T01:CDS 50.0%
CTCCAAACACCAGACCCATA+AGG - Chr2:80078603-80078622 None:intergenic 50.0%
CTCGTCGAGAGAGTAGGATT+CGG - Chr2:80078457-80078476 None:intergenic 50.0%
GAAGATCGCCGGATTGAGAT+CGG - Chr2:80078488-80078507 None:intergenic 50.0%
GCACAACCAACACCAACAAC+CGG - Chr2:80078846-80078865 None:intergenic 50.0%
GCAGGCAGGAAAACAATCGA+AGG - Chr2:80078924-80078943 None:intergenic 50.0%
GGGGTGGAAAGAGTTTAAGG+CGG + Chr2:80079313-80079332 MsG0280011142.01.T01:CDS 50.0%
GTCAAAGCAACACCAGTGTG+AGG - Chr2:80079506-80079525 None:intergenic 50.0%
GTCGGGGTGGAAAGAGTTTA+AGG + Chr2:80079310-80079329 MsG0280011142.01.T01:CDS 50.0%
TACCGACACGTGAATCGAAG+AGG - Chr2:80078569-80078588 None:intergenic 50.0%
TGTTGAGGAAGCTACTGAGG+AGG + Chr2:80079430-80079449 MsG0280011142.01.T01:CDS 50.0%
! CACGTGTCGGTAAAACCACA+TGG + Chr2:80078577-80078596 MsG0280011142.01.T01:CDS 50.0%
! GAAGATGGATCGGCGTTGAA+AGG - Chr2:80078432-80078451 None:intergenic 50.0%
! GGAAAGAGTTTAAGGCGGTG+AGG + Chr2:80079318-80079337 MsG0280011142.01.T01:CDS 50.0%
! GGCGTTGAAAGGGACGTATT+TGG - Chr2:80078421-80078440 None:intergenic 50.0%
! GTTGGGAGACGTTTTTGCGA+CGG - Chr2:80078386-80078405 None:intergenic 50.0%
! GTTGTGGTGAGTACTGCACA+TGG + Chr2:80079578-80079597 MsG0280011142.01.T01:CDS 50.0%
! TCCAAGGCTTGTTTGTGCTC+AGG + Chr2:80079253-80079272 MsG0280011142.01.T01:CDS 50.0%
! TTGGGAGACGTTTTTGCGAC+GGG - Chr2:80078385-80078404 None:intergenic 50.0%
!! ACGCAGGTCAAGGCTGATTT+TGG + Chr2:80079680-80079699 MsG0280011142.01.T01:CDS 50.0%
!! ATGGCTCAAGCTGATTCGAC+CGG + Chr2:80079467-80079486 MsG0280011142.01.T01:CDS 50.0%
!! CGCAGGTCAAGGCTGATTTT+GGG + Chr2:80079681-80079700 MsG0280011142.01.T01:CDS 50.0%
!! GAGTAGGATTCGGTGGAAGA+TGG - Chr2:80078447-80078466 None:intergenic 50.0%
!! GGATTCGGTGGAAGATGGAT+CGG - Chr2:80078442-80078461 None:intergenic 50.0%
!! GGTGTTGGTTGTGCTTCAAC+TGG + Chr2:80078852-80078871 MsG0280011142.01.T01:CDS 50.0%
AACCGTCCGGTTGTTGGTGT+TGG + Chr2:80078837-80078856 MsG0280011142.01.T01:CDS 55.0%
ACCAGACCCATAAGGCCATG+TGG - Chr2:80078595-80078614 None:intergenic 55.0%
ATTGTGCCGGGTGGGAATCT+TGG + Chr2:80079167-80079186 MsG0280011142.01.T01:CDS 55.0%
CCCGGCACAATAACCCAATC+CGG - Chr2:80079158-80079177 None:intergenic 55.0%
GACGATCTCGTCGAGAGAGT+AGG - Chr2:80078463-80078482 None:intergenic 55.0%
GATTGGGTTATTGTGCCGGG+TGG + Chr2:80079158-80079177 MsG0280011142.01.T01:CDS 55.0%
GCAGTTTGATTGGCAGGTGC+CGG + Chr2:80079136-80079155 MsG0280011142.01.T01:CDS 55.0%
GCCTACTGACAGGACTGTTG+TGG + Chr2:80079562-80079581 MsG0280011142.01.T01:CDS 55.0%
GCCTGAGCACAAACAAGCCT+TGG - Chr2:80079257-80079276 None:intergenic 55.0%
GTCGAGAGAGTAGGATTCGG+TGG - Chr2:80078454-80078473 None:intergenic 55.0%
! CCGGATTGGGTTATTGTGCC+GGG + Chr2:80079155-80079174 MsG0280011142.01.T01:CDS 55.0%
! GCCGGATTGGGTTATTGTGC+CGG + Chr2:80079154-80079173 MsG0280011142.01.T01:CDS 55.0%
! GGCCTTATGGGTCTGGTGTT+TGG + Chr2:80078598-80078617 MsG0280011142.01.T01:CDS 55.0%
! GTCGCGGATGTTTTCATCGG+CGG - Chr2:80078358-80078377 None:intergenic 55.0%
! GTCGGCTTATTGTGCATCGG+CGG + Chr2:80078893-80078912 MsG0280011142.01.T01:CDS 55.0%
! TCGCGGATGTTTTCATCGGC+GGG - Chr2:80078357-80078376 None:intergenic 55.0%
! TCGGCTTATTGTGCATCGGC+GGG + Chr2:80078894-80078913 MsG0280011142.01.T01:CDS 55.0%
!! ACCACATGGCCTTATGGGTC+TGG + Chr2:80078591-80078610 MsG0280011142.01.T01:CDS 55.0%
!! TGATTGGCAGGTGCCGGATT+GGG + Chr2:80079142-80079161 MsG0280011142.01.T01:CDS 55.0%
!! TGGCTCAAGCTGATTCGACC+GGG + Chr2:80079468-80079487 MsG0280011142.01.T01:CDS 55.0%
!! TTGATTGGCAGGTGCCGGAT+TGG + Chr2:80079141-80079160 MsG0280011142.01.T01:CDS 55.0%
CTGCACGTCGAGAAGATCGC+CGG - Chr2:80078499-80078518 None:intergenic 60.0%
TCAGCCTTGACCTGCGTTGG+AGG - Chr2:80079677-80079696 None:intergenic 60.0%
TTGGGGTTGGGGTGGGAGTA+GGG - Chr2:80078308-80078327 None:intergenic 60.0%
! CGCGGATGTTTTCATCGGCG+GGG - Chr2:80078356-80078375 None:intergenic 60.0%
! CGGCTTATTGTGCATCGGCG+GGG + Chr2:80078895-80078914 MsG0280011142.01.T01:CDS 60.0%
! GGATGTTTTCATCGGCGGGG+CGG - Chr2:80078353-80078372 None:intergenic 60.0%
!! TTTTGCGACGGGCTTCGTCG+CGG - Chr2:80078374-80078393 None:intergenic 60.0%
AGGGGTTGGGGTTGGGGTTG+GGG - Chr2:80078319-80078338 None:intergenic 65.0%
GAGGGGTTGGGGTTGGGGTT+GGG - Chr2:80078320-80078339 None:intergenic 65.0%
GTTGGGGTGGGAGTAGGGGT+GGG - Chr2:80078303-80078322 None:intergenic 65.0%
GTTGGGGTTGGGGTGGGAGT+AGG - Chr2:80078309-80078328 None:intergenic 65.0%
GTTGGGGTTGGGGTTGGGGT+GGG - Chr2:80078315-80078334 None:intergenic 65.0%
TGGGGTTGGGGTGGGAGTAG+GGG - Chr2:80078307-80078326 None:intergenic 65.0%
TGGTGGGAGGGGTTGGGGTT+GGG - Chr2:80078326-80078345 None:intergenic 65.0%
TTGGGGTGGGAGTAGGGGTG+GGG - Chr2:80078302-80078321 None:intergenic 65.0%
! TGTTTTCATCGGCGGGGCGG+CGG - Chr2:80078350-80078369 None:intergenic 65.0%
GGAGGGGTTGGGGTTGGGGT+TGG - Chr2:80078321-80078340 None:intergenic 70.0%
GGTGGGAGGGGTTGGGGTTG+GGG - Chr2:80078325-80078344 None:intergenic 70.0%
GGTTGGGGTGGGAGTAGGGG+TGG - Chr2:80078304-80078323 None:intergenic 70.0%
GGTTGGGGTTGGGGTTGGGG+TGG - Chr2:80078316-80078335 None:intergenic 70.0%
TGGGGTGGGAGTAGGGGTGG+GGG - Chr2:80078301-80078320 None:intergenic 70.0%
! GTGGTGGGAGGGGTTGGGGT+TGG - Chr2:80078327-80078346 None:intergenic 70.0%
! GTTTTCATCGGCGGGGCGGC+GGG - Chr2:80078349-80078368 None:intergenic 70.0%
!! GCGGGTGGTGGGAGGGGTTG+GGG - Chr2:80078331-80078350 None:intergenic 75.0%
!! GGCGGGTGGTGGGAGGGGTT+GGG - Chr2:80078332-80078351 None:intergenic 75.0%
! TTCATCGGCGGGGCGGCGGG+TGG - Chr2:80078346-80078365 None:intergenic 80.0%
!!! CGGCGGGTGGTGGGAGGGGT+TGG - Chr2:80078333-80078352 None:intergenic 80.0%
! ATCGGCGGGGCGGCGGGTGG+TGG - Chr2:80078343-80078362 None:intergenic 85.0%
! TCGGCGGGGCGGCGGGTGGT+GGG - Chr2:80078342-80078361 None:intergenic 85.0%
!!! CGGGGCGGCGGGTGGTGGGA+GGG - Chr2:80078338-80078357 None:intergenic 85.0%
!!! GGGGCGGCGGGTGGTGGGAG+GGG - Chr2:80078337-80078356 None:intergenic 85.0%
!!! GCGGGGCGGCGGGTGGTGGG+AGG - Chr2:80078339-80078358 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
Chr2 gene 80078150 80079760 80078150 ID=MsG0280011142.01;Name=MsG0280011142.01
Chr2 mRNA 80078150 80079760 80078150 ID=MsG0280011142.01.T01;Parent=MsG0280011142.01;Name=MsG0280011142.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|536
Chr2 exon 80078150 80079760 80078150 ID=MsG0280011142.01.T01:exon:10175;Parent=MsG0280011142.01.T01
Chr2 CDS 80078150 80079760 80078150 ID=MsG0280011142.01.T01:cds;Parent=MsG0280011142.01.T01
Gene Sequence

>MsG0280011142.01.T01

ATGGCTTCTTCAACATCTCTGTTTCAATCTTCACCTTTCTCCCTCAACACCAAAACCAAACCCTATTCTTCTCTTTCCAAATCACCAAAACCCACTCATTTCATTATCAAATCTCAACAACAACCACACCCCCTTACTCAAAACAACACCCCCACCCCTACTCCCACCCCAACCCCAACCCCAACCCCTCCCACCACCCGCCGCCCCGCCGATGAAAACATCCGCGACGAAGCCCGTCGCAAAAACGTCTCCCAACATCTCTTCTCCGCCAAATACGTCCCTTTCAACGCCGATCCATCTTCCACCGAATCCTACTCTCTCGACGAGATCGTCTACCGATCTCAATCCGGCGATCTTCTCGACGTGCAGCACGACCTAACCGCCTTGAAGAAATTCGATGGAGCTTACTGGCGTAACCTCTTCGATTCACGTGTCGGTAAAACCACATGGCCTTATGGGTCTGGTGTTTGGAGCAAAAAGGAATGGGTTTTACCTGAGATCGATGATGATGATATTGTTAGTGCTTTTGAAGGTAATTCTAATCTTTTTTGGGCTGAGCGTTTTGGCAAACAGTTTCTAGGCATGAGTGATTTGTGGGTTAAGCATTGTGGTATTAGTCATACTGGTAGTTTTAAGGATCTTGGTATGACTGTGCTTGTTAGTCAAGTTAACCGCTTGCGAAAAATGAACCGTCCGGTTGTTGGTGTTGGTTGTGCTTCAACTGGGGATACTTCAGCTGCTTTGTCGGCTTATTGTGCATCGGCGGGGATACCTTCGATTGTTTTCCTGCCTGCTAATAGGATTTCCATTGCTCAATTGGTTCAACCGATTGCAAATGGTGCTTTTGTTCTTAGCATTGATACTGATTTTGATGGGTGTATGCAGTTGATAAGAGAGGTGACTGCTGAATTGCCGATTTATTTGGCGAATTCACTTAATAGTTTGAGGCTTGAAGGACAGAAAACGGCTGCTATTGAGATTTTGCAGCAGTTTGATTGGCAGGTGCCGGATTGGGTTATTGTGCCGGGTGGGAATCTTGGAAATATTTATGCTTTTTATAAAGGGTTTCATATGTGTAGAGAGTTAGGTCTTGTGGATAGGATTCCAAGGCTTGTTTGTGCTCAGGCTGCGAACGCGAATCCTTTGTATTTGTATTTTAAGTCGGGGTGGAAAGAGTTTAAGGCGGTGAGGGCGCAGACTACTTTTGCATCTGCTATTCAGATTGGTGATCCAGTTTCAATTGATAGAGCTGTTCATGCTTTGAAGAACTGTAATGGTATTGTTGAGGAAGCTACTGAGGAGGAATTGATGGATGCTATGGCTCAAGCTGATTCGACCGGGATGTTTACTTGTCCTCACACTGGTGTTGCTTTGACTGCTTTGTTTAAACTCAGGAATAGCGGAGTTATTAAGCCTACTGACAGGACTGTTGTGGTGAGTACTGCACATGGGTTGAAGTTTACTCAGTCCAAAATTGATTACCATTCAAAGGGTATCAAGGATTTGGCTTGCCAATTTGCAAATCCTCCAACGCAGGTCAAGGCTGATTTTGGGTCTGTTATGGATGTTTTGTCCAAGTATTTGCAGAGCAAGGCTCCCAAGTATCATTAG

Protein sequence

>MsG0280011142.01.T01

MASSTSLFQSSPFSLNTKTKPYSSLSKSPKPTHFIIKSQQQPHPLTQNNTPTPTPTPTPTPTPPTTRRPADENIRDEARRKNVSQHLFSAKYVPFNADPSSTESYSLDEIVYRSQSGDLLDVQHDLTALKKFDGAYWRNLFDSRVGKTTWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQFLGMSDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMNRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANRISIAQLVQPIANGAFVLSIDTDFDGCMQLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFHMCRELGLVDRIPRLVCAQAANANPLYLYFKSGWKEFKAVRAQTTFASAIQIGDPVSIDRAVHALKNCNGIVEEATEEELMDAMAQADSTGMFTCPHTGVALTALFKLRNSGVIKPTDRTVVVSTAHGLKFTQSKIDYHSKGIKDLACQFANPPTQVKADFGSVMDVLSKYLQSKAPKYH*