Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011745.01.T03 | XP_003598311.1 | 95 | 140 | 7 | 0 | 1 | 140 | 31 | 170 | 3.18E-94 | 279 |
| MsG0380011745.01.T01 | XP_003598311.1 | 97.647 | 170 | 4 | 0 | 1 | 170 | 1 | 170 | 5.06E-119 | 343 |
| MsG0380011745.01.T02 | XP_003598311.1 | 92.941 | 170 | 7 | 1 | 1 | 165 | 1 | 170 | 5.64E-102 | 300 |
| MsG0380011745.01.T04 | XP_003598311.1 | 95.868 | 121 | 5 | 0 | 7 | 127 | 50 | 170 | 6.36E-80 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011745.01.T01 | Q9FKT1 | 61.702 | 141 | 50 | 2 | 34 | 170 | 28 | 168 | 2.96E-59 | 184 |
| MsG0380011745.01.T02 | Q9FKT1 | 62.411 | 141 | 49 | 2 | 29 | 165 | 28 | 168 | 2.16E-60 | 187 |
| MsG0380011745.01.T03 | Q9FKT1 | 62.411 | 141 | 49 | 2 | 4 | 140 | 28 | 168 | 3.48E-60 | 186 |
| MsG0380011745.01.T04 | Q9FKT1 | 65 | 120 | 39 | 1 | 11 | 127 | 49 | 168 | 1.15E-52 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011745.01.T01 | G7J0F7 | 97.647 | 170 | 4 | 0 | 1 | 170 | 1 | 170 | 2.42e-119 | 343 |
| MsG0380011745.01.T02 | G7J0F7 | 92.941 | 170 | 7 | 1 | 1 | 165 | 1 | 170 | 2.69e-102 | 300 |
| MsG0380011745.01.T03 | G7J0F7 | 95.000 | 140 | 7 | 0 | 1 | 140 | 31 | 170 | 1.52e-94 | 279 |
| MsG0380011745.01.T04 | G7J0F7 | 95.868 | 121 | 5 | 0 | 7 | 127 | 50 | 170 | 3.04e-80 | 243 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0280011210.01 | MsG0380011745.01 | 0.809839 | 1.551447e-50 | 9.206642e-48 |
| MsG0380011745.01 | MsG0480021042.01 | 0.810720 | 1.001762e-50 | 6.084302e-48 |
| MsG0380011745.01 | MsG0480023987.01 | 0.831107 | 2.013500e-55 | 2.163550e-52 |
| MsG0380011745.01 | MsG0580025441.01 | 0.800298 | 1.539176e-48 | 7.141579e-46 |
| MsG0380011745.01 | MsG0880047495.01 | 0.803229 | 3.851793e-49 | 1.925192e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011745.01.T03 | MTR_3g010180 | 95.000 | 140 | 7 | 0 | 1 | 140 | 31 | 170 | 3.85e-98 | 279 |
| MsG0380011745.01.T03 | MTR_6g025620 | 54.015 | 137 | 63 | 0 | 4 | 140 | 17 | 153 | 2.14e-52 | 163 |
| MsG0380011745.01.T03 | MTR_6g025670 | 66.019 | 103 | 35 | 0 | 3 | 105 | 35 | 137 | 1.39e-47 | 152 |
| MsG0380011745.01.T03 | MTR_6g018540 | 66.019 | 103 | 35 | 0 | 3 | 105 | 35 | 137 | 1.39e-47 | 152 |
| MsG0380011745.01.T03 | MTR_6g011010 | 63.810 | 105 | 37 | 1 | 1 | 104 | 25 | 129 | 6.27e-46 | 146 |
| MsG0380011745.01.T01 | MTR_3g010180 | 97.647 | 170 | 4 | 0 | 1 | 170 | 1 | 170 | 6.13e-123 | 343 |
| MsG0380011745.01.T01 | MTR_6g025620 | 55.000 | 140 | 63 | 0 | 31 | 170 | 14 | 153 | 2.84e-54 | 169 |
| MsG0380011745.01.T01 | MTR_6g025670 | 54.887 | 133 | 59 | 1 | 2 | 134 | 5 | 136 | 9.33e-48 | 153 |
| MsG0380011745.01.T01 | MTR_6g018540 | 54.887 | 133 | 59 | 1 | 2 | 134 | 5 | 136 | 9.33e-48 | 153 |
| MsG0380011745.01.T01 | MTR_6g011010 | 58.140 | 129 | 49 | 3 | 9 | 134 | 3 | 129 | 1.89e-46 | 148 |
| MsG0380011745.01.T02 | MTR_3g010180 | 92.941 | 170 | 7 | 1 | 1 | 165 | 1 | 170 | 6.83e-106 | 300 |
| MsG0380011745.01.T02 | MTR_6g025620 | 54.015 | 137 | 63 | 0 | 29 | 165 | 17 | 153 | 2.13e-52 | 164 |
| MsG0380011745.01.T02 | MTR_6g025670 | 63.158 | 114 | 42 | 0 | 16 | 129 | 23 | 136 | 8.15e-49 | 155 |
| MsG0380011745.01.T02 | MTR_6g018540 | 63.158 | 114 | 42 | 0 | 16 | 129 | 23 | 136 | 8.15e-49 | 155 |
| MsG0380011745.01.T02 | MTR_6g011010 | 59.843 | 127 | 45 | 3 | 9 | 129 | 3 | 129 | 2.33e-47 | 150 |
| MsG0380011745.01.T04 | MTR_3g010180 | 95.868 | 121 | 5 | 0 | 7 | 127 | 50 | 170 | 7.70e-84 | 243 |
| MsG0380011745.01.T04 | MTR_6g025620 | 55.556 | 117 | 52 | 0 | 11 | 127 | 37 | 153 | 8.22e-46 | 146 |
| MsG0380011745.01.T04 | MTR_6g025670 | 69.880 | 83 | 25 | 0 | 10 | 92 | 55 | 137 | 1.84e-40 | 133 |
| MsG0380011745.01.T04 | MTR_6g018540 | 69.880 | 83 | 25 | 0 | 10 | 92 | 55 | 137 | 1.84e-40 | 133 |
| MsG0380011745.01.T04 | MTR_6g011010 | 66.279 | 86 | 28 | 1 | 7 | 91 | 44 | 129 | 5.79e-38 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011745.01.T03 | AT5G56170 | 62.411 | 141 | 49 | 2 | 4 | 140 | 28 | 168 | 3.55e-61 | 186 |
| MsG0380011745.01.T03 | AT4G26466 | 51.773 | 141 | 63 | 3 | 4 | 140 | 25 | 164 | 2.08e-49 | 156 |
| MsG0380011745.01.T03 | AT2G20700 | 54.478 | 134 | 61 | 0 | 7 | 140 | 27 | 160 | 6.60e-48 | 152 |
| MsG0380011745.01.T03 | AT4G28280 | 56.061 | 132 | 55 | 1 | 7 | 138 | 10 | 138 | 9.88e-47 | 148 |
| MsG0380011745.01.T03 | AT4G28280 | 56.061 | 132 | 55 | 1 | 7 | 138 | 31 | 159 | 1.33e-46 | 149 |
| MsG0380011745.01.T03 | AT4G28280 | 56.897 | 116 | 47 | 1 | 23 | 138 | 21 | 133 | 2.23e-41 | 134 |
| MsG0380011745.01.T01 | AT5G56170 | 61.702 | 141 | 50 | 2 | 34 | 170 | 28 | 168 | 3.01e-60 | 184 |
| MsG0380011745.01.T01 | AT4G26466 | 51.064 | 141 | 64 | 3 | 34 | 170 | 25 | 164 | 2.94e-48 | 154 |
| MsG0380011745.01.T01 | AT2G20700 | 54.478 | 134 | 61 | 0 | 37 | 170 | 27 | 160 | 9.38e-48 | 153 |
| MsG0380011745.01.T01 | AT4G28280 | 56.061 | 132 | 55 | 1 | 37 | 168 | 10 | 138 | 2.02e-46 | 149 |
| MsG0380011745.01.T01 | AT4G28280 | 56.061 | 132 | 55 | 1 | 37 | 168 | 31 | 159 | 3.19e-46 | 149 |
| MsG0380011745.01.T01 | AT4G28280 | 65.934 | 91 | 31 | 0 | 53 | 143 | 21 | 111 | 3.24e-41 | 135 |
| MsG0380011745.01.T02 | AT5G56170 | 62.411 | 141 | 49 | 2 | 29 | 165 | 28 | 168 | 2.20e-61 | 187 |
| MsG0380011745.01.T02 | AT4G26466 | 51.773 | 141 | 63 | 3 | 29 | 165 | 25 | 164 | 2.59e-49 | 157 |
| MsG0380011745.01.T02 | AT2G20700 | 54.478 | 134 | 61 | 0 | 32 | 165 | 27 | 160 | 7.99e-48 | 153 |
| MsG0380011745.01.T02 | AT4G28280 | 55.639 | 133 | 56 | 1 | 32 | 164 | 10 | 139 | 1.12e-46 | 149 |
| MsG0380011745.01.T02 | AT4G28280 | 55.639 | 133 | 56 | 1 | 32 | 164 | 31 | 160 | 1.53e-46 | 149 |
| MsG0380011745.01.T02 | AT4G28280 | 65.934 | 91 | 31 | 0 | 48 | 138 | 21 | 111 | 1.90e-41 | 135 |
| MsG0380011745.01.T04 | AT5G56170 | 65.000 | 120 | 39 | 1 | 11 | 127 | 49 | 168 | 1.17e-53 | 166 |
| MsG0380011745.01.T04 | AT4G26466 | 52.419 | 124 | 55 | 2 | 7 | 127 | 42 | 164 | 8.35e-43 | 139 |
| MsG0380011745.01.T04 | AT2G20700 | 56.410 | 117 | 51 | 0 | 11 | 127 | 44 | 160 | 1.34e-42 | 138 |
| MsG0380011745.01.T04 | AT4G28280 | 57.143 | 119 | 48 | 1 | 7 | 125 | 23 | 138 | 3.88e-42 | 136 |
| MsG0380011745.01.T04 | AT4G28280 | 57.143 | 119 | 48 | 1 | 7 | 125 | 44 | 159 | 3.91e-42 | 137 |
| MsG0380011745.01.T04 | AT4G28280 | 56.897 | 116 | 47 | 1 | 10 | 125 | 21 | 133 | 1.86e-41 | 134 |
Find 37 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGCTACATTAATCTTTA+TGG | 0.084552 | 3:-4398573 | MsG0380011745.01.T01:CDS |
| TTTGATGCTGAGACACTTAC+TGG | 0.273135 | 3:-4400309 | MsG0380011745.01.T01:CDS |
| TCATTTATCACATCAGTATA+AGG | 0.287486 | 3:+4398624 | None:intergenic |
| TTCTTCACTTCTTCTCATCA+TGG | 0.345119 | 3:-4400508 | MsG0380011745.01.T01:CDS |
| AAATGCTCCACAACATTCCT+TGG | 0.377041 | 3:+4398662 | None:intergenic |
| TTATTCAACAAATCTATAAC+TGG | 0.408997 | 3:-4400608 | MsG0380011745.01.T01:five_prime_UTR |
| CATTCCTTGGGAGGGTACTT+AGG | 0.429542 | 3:+4398675 | None:intergenic |
| TTAATCATCCATTCCTCAAA+AGG | 0.448455 | 3:-4400699 | MsG0380011745.01.T01:five_prime_UTR |
| AACTTAATATTTGACAATTG+AGG | 0.454715 | 3:-4400674 | MsG0380011745.01.T01:five_prime_UTR |
| TAGTTACTAGGAAGAAAAGT+TGG | 0.466274 | 3:+4400462 | None:intergenic |
| AATGCTCCACAACATTCCTT+GGG | 0.478717 | 3:+4398663 | None:intergenic |
| CATTTATCACATCAGTATAA+GGG | 0.483862 | 3:+4398625 | None:intergenic |
| CACTCGCTCGCAAAGAGGCC+AGG | 0.497941 | 3:+4398540 | None:intergenic |
| TTGTTTCACATTGCACCTGC+AGG | 0.503151 | 3:-4398756 | MsG0380011745.01.T01:intron |
| CACGACACTCGCTCGCAAAG+AGG | 0.542743 | 3:+4398535 | None:intergenic |
| CGCTCGCAAAGAGGCCAGGA+GGG | 0.563412 | 3:+4398544 | None:intergenic |
| GAGCGAGTGTCGTGAAGGGA+AGG | 0.564311 | 3:-4398526 | MsG0380011745.01.T01:CDS |
| GATTTGATTTGCAGTATCAT+CGG | 0.571086 | 3:+4398464 | None:intergenic |
| AAATTCACAGAACAGCCTGC+AGG | 0.577799 | 3:+4398741 | None:intergenic |
| GTATCATCGGCGGACACTGA+TGG | 0.584167 | 3:+4398477 | None:intergenic |
| CTTTATGGAAGATACCCTCC+TGG | 0.585291 | 3:-4398558 | MsG0380011745.01.T01:CDS |
| GTGAGCACCAACACTAGAGA+TGG | 0.586875 | 3:+4398432 | None:intergenic |
| ACATACTCCATCTCTAGTGT+TGG | 0.590041 | 3:-4398439 | MsG0380011745.01.T01:CDS |
| TACCCTCCCAAGGAATGTTG+TGG | 0.591187 | 3:-4398669 | MsG0380011745.01.T01:CDS |
| ACATCATAGAACAAACATCA+TGG | 0.591577 | 3:-4400565 | MsG0380011745.01.T01:exon |
| TTTGCGAGCGAGTGTCGTGA+AGG | 0.593755 | 3:-4398531 | MsG0380011745.01.T01:CDS |
| CTCCACAACATTCCTTGGGA+GGG | 0.609435 | 3:+4398667 | None:intergenic |
| TTGCGAGCGAGTGTCGTGAA+GGG | 0.616291 | 3:-4398530 | MsG0380011745.01.T01:CDS |
| GCTCCACAACATTCCTTGGG+AGG | 0.623412 | 3:+4398666 | None:intergenic |
| GAGTGTCGTGAAGGGAAGGA+AGG | 0.628790 | 3:-4398522 | MsG0380011745.01.T01:CDS |
| TCGCTCGCAAAGAGGCCAGG+AGG | 0.631835 | 3:+4398543 | None:intergenic |
| AAGATTAATGTAGCTAAACA+TGG | 0.635506 | 3:+4398578 | None:intergenic |
| ATAATCACAAGCAAATGCAA+AGG | 0.641999 | 3:-4398699 | MsG0380011745.01.T01:CDS |
| AATGTAGCTAAACATGGTTG+AGG | 0.646232 | 3:+4398584 | None:intergenic |
| TCATCGGCGGACACTGATGG+TGG | 0.646590 | 3:+4398480 | None:intergenic |
| AGGACCTAAGTACCCTCCCA+AGG | 0.651427 | 3:-4398679 | MsG0380011745.01.T01:CDS |
| TTGATTTGCAGTATCATCGG+CGG | 0.696584 | 3:+4398467 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAAAGAAAAAAGAATT+AGG | - | Chr3:4399685-4399704 | MsG0380011745.01.T01:intron | 15.0% |
| !! | ATAAATTGAAAACAACTTAA+TGG | + | Chr3:4399214-4399233 | None:intergenic | 15.0% |
| !! | TAAATTGAAAACAACTTAAT+GGG | + | Chr3:4399213-4399232 | None:intergenic | 15.0% |
| !!! | AAAGTTCAAATTTTTATATC+TGG | - | Chr3:4398562-4398581 | MsG0380011745.01.T01:CDS | 15.0% |
| !!! | AAGTTCAAATTTTTATATCT+GGG | - | Chr3:4398563-4398582 | MsG0380011745.01.T01:CDS | 15.0% |
| !! | AACTTAATATTTGACAATTG+AGG | - | Chr3:4398250-4398269 | MsG0380011745.01.T01:three_prime_UTR | 20.0% |
| !! | ATTATTATTGTTTGTAGTTG+TGG | - | Chr3:4398836-4398855 | MsG0380011745.01.T01:intron | 20.0% |
| !! | TATACGGTAACTATATATAA+GGG | + | Chr3:4400685-4400704 | None:intergenic | 20.0% |
| !! | TATTTCAGTTATCTATGTTT+AGG | - | Chr3:4399757-4399776 | MsG0380011745.01.T01:intron | 20.0% |
| !! | TTATTCAACAAATCTATAAC+TGG | - | Chr3:4398316-4398335 | MsG0380011745.01.T01:three_prime_UTR | 20.0% |
| !! | TTATTGTATAATACATGTAC+TGG | - | Chr3:4400086-4400105 | MsG0380011745.01.T01:intron | 20.0% |
| !! | TTTAGCTACATTAATCTTTA+TGG | - | Chr3:4400351-4400370 | MsG0380011745.01.T01:intron | 20.0% |
| !!! | AATATTAAGTTTTCCTTTTG+AGG | + | Chr3:4398241-4398260 | None:intergenic | 20.0% |
| ! | AAGATTAATGTAGCTAAACA+TGG | + | Chr3:4400349-4400368 | None:intergenic | 25.0% |
| ! | AGATTGTTTGAGAGAATTTA+TGG | - | Chr3:4399170-4399189 | MsG0380011745.01.T01:intron | 25.0% |
| ! | AGGATCAAAATGATAACTTA+GGG | - | Chr3:4399108-4399127 | MsG0380011745.01.T01:intron | 25.0% |
| ! | ATACAACATAGGTAACTATA+CGG | + | Chr3:4400701-4400720 | None:intergenic | 25.0% |
| ! | ATACTATAGTGTGTAGAATT+TGG | - | Chr3:4399645-4399664 | MsG0380011745.01.T01:intron | 25.0% |
| ! | CATTTATCACATCAGTATAA+GGG | + | Chr3:4400302-4400321 | None:intergenic | 25.0% |
| ! | CTATACGGTAACTATATATA+AGG | + | Chr3:4400686-4400705 | None:intergenic | 25.0% |
| ! | TACACACATACATTAGTATT+GGG | - | Chr3:4399386-4399405 | MsG0380011745.01.T01:intron | 25.0% |
| ! | TACACACTATAGTATTTATG+TGG | + | Chr3:4399640-4399659 | None:intergenic | 25.0% |
| ! | TAGGATCAAAATGATAACTT+AGG | - | Chr3:4399107-4399126 | MsG0380011745.01.T01:intron | 25.0% |
| ! | TATTTCCATAAGCTCTATAT+AGG | - | Chr3:4399231-4399250 | MsG0380011745.01.T01:intron | 25.0% |
| ! | TCATTTATCACATCAGTATA+AGG | + | Chr3:4400303-4400322 | None:intergenic | 25.0% |
| ! | TGATAATTCAACAAGATACA+TGG | + | Chr3:4399487-4399506 | None:intergenic | 25.0% |
| ! | TTACACACATACATTAGTAT+TGG | - | Chr3:4399385-4399404 | MsG0380011745.01.T01:intron | 25.0% |
| ! | TTTATGTGACTTCAAATCTT+TGG | - | Chr3:4399025-4399044 | MsG0380011745.01.T01:intron | 25.0% |
| !! | AGTTTTTCCAATATTTGAAG+TGG | - | Chr3:4398951-4398970 | MsG0380011745.01.T01:intron | 25.0% |
| !! | GATTTGAAGTCACATAAAAA+TGG | + | Chr3:4399023-4399042 | None:intergenic | 25.0% |
| !!! | GTTTTTCCAATATTTGAAGT+GGG | - | Chr3:4398952-4398971 | MsG0380011745.01.T01:intron | 25.0% |
| !!! | TCTTTTTTCTTCTATGCTTT+TGG | - | Chr3:4398681-4398700 | MsG0380011745.01.T01:CDS | 25.0% |
| AAAAAGTTGTGAAGTGAAGA+AGG | + | Chr3:4398494-4398513 | None:intergenic | 30.0% | |
| AACAGCTATTATCTAGAGAA+CGG | + | Chr3:4399593-4399612 | None:intergenic | 30.0% | |
| ACAACACTCAAATACAACAT+AGG | + | Chr3:4400712-4400731 | None:intergenic | 30.0% | |
| ACACACATACATTAGTATTG+GGG | - | Chr3:4399387-4399406 | MsG0380011745.01.T01:intron | 30.0% | |
| ACATCATAGAACAAACATCA+TGG | - | Chr3:4398359-4398378 | MsG0380011745.01.T01:three_prime_UTR | 30.0% | |
| ACTACAATGCTATAACATAG+TGG | - | Chr3:4399882-4399901 | MsG0380011745.01.T01:intron | 30.0% | |
| AGAAGGAAAAGATAGTTACT+AGG | + | Chr3:4398477-4398496 | None:intergenic | 30.0% | |
| ATAATCACAAGCAAATGCAA+AGG | - | Chr3:4400225-4400244 | MsG0380011745.01.T01:intron | 30.0% | |
| ATGATAACTTAGGGCTTATT+TGG | - | Chr3:4399117-4399136 | MsG0380011745.01.T01:intron | 30.0% | |
| ATTCATTACTGAACTCATGT+AGG | - | Chr3:4399794-4399813 | MsG0380011745.01.T01:intron | 30.0% | |
| CATCTTCTTCAAGCTAAAAA+AGG | - | Chr3:4398642-4398661 | MsG0380011745.01.T01:CDS | 30.0% | |
| CTATACTTTAGACCTCAATT+TGG | + | Chr3:4399090-4399109 | None:intergenic | 30.0% | |
| GATAAAATATACCGTCTTTG+TGG | - | Chr3:4399458-4399477 | MsG0380011745.01.T01:intron | 30.0% | |
| GATCTAATCATGTTCAAAGT+TGG | + | Chr3:4399555-4399574 | None:intergenic | 30.0% | |
| TAGTTACTAGGAAGAAAAGT+TGG | + | Chr3:4398465-4398484 | None:intergenic | 30.0% | |
| TGACTTCAAATCTTTGGATT+TGG | - | Chr3:4399031-4399050 | MsG0380011745.01.T01:intron | 30.0% | |
| TGATAACTTAGGGCTTATTT+GGG | - | Chr3:4399118-4399137 | MsG0380011745.01.T01:intron | 30.0% | |
| TGATCTCACATAAAGCTTAA+TGG | + | Chr3:4398993-4399012 | None:intergenic | 30.0% | |
| TGATTAGATCTTCGTATTCT+TGG | - | Chr3:4399565-4399584 | MsG0380011745.01.T01:intron | 30.0% | |
| TTAATCATCCATTCCTCAAA+AGG | - | Chr3:4398225-4398244 | MsG0380011745.01.T01:three_prime_UTR | 30.0% | |
| TTTAGTCCCACTTCAAATAT+TGG | + | Chr3:4398961-4398980 | None:intergenic | 30.0% | |
| ! | ACAGCAATTTTTCCAGAATT+TGG | + | Chr3:4399437-4399456 | None:intergenic | 30.0% |
| ! | AGAATTAGGCTCTTTCTTTT+TGG | - | Chr3:4399699-4399718 | MsG0380011745.01.T01:intron | 30.0% |
| ! | CAAATTGAGGTCTAAAGTAT+AGG | - | Chr3:4399088-4399107 | MsG0380011745.01.T01:intron | 30.0% |
| ! | GTTTGTTCTATGATGTTTTG+TGG | + | Chr3:4398355-4398374 | None:intergenic | 30.0% |
| ! | TATTTGAAGTGGGACTAAAA+TGG | - | Chr3:4398962-4398981 | MsG0380011745.01.T01:intron | 30.0% |
| !! | GATTTGATTTGCAGTATCAT+CGG | + | Chr3:4400463-4400482 | None:intergenic | 30.0% |
| !! | TAAGTTTTCCTTTTGAGGAA+TGG | + | Chr3:4398236-4398255 | None:intergenic | 30.0% |
| !! | TTAGAGATTGCAAGTTTTGT+TGG | - | Chr3:4400732-4400751 | MsG0380011745.01.T01:five_prime_UTR | 30.0% |
| !!! | CTTTTTTAGCTTGAAGAAGA+TGG | + | Chr3:4398644-4398663 | None:intergenic | 30.0% |
| AATGTAGCTAAACATGGTTG+AGG | + | Chr3:4400343-4400362 | None:intergenic | 35.0% | |
| ACAACCTGTATTTGACAACA+TGG | + | Chr3:4399953-4399972 | None:intergenic | 35.0% | |
| ACTAATGTATGTGTGTAACC+TGG | + | Chr3:4399383-4399402 | None:intergenic | 35.0% | |
| ATAGCTGTTTGAGAAAGATC+TGG | - | Chr3:4399604-4399623 | MsG0380011745.01.T01:intron | 35.0% | |
| GCTATCCTATATAGAGCTTA+TGG | + | Chr3:4399239-4399258 | None:intergenic | 35.0% | |
| TACACCATGTTGTCAAATAC+AGG | - | Chr3:4399946-4399965 | MsG0380011745.01.T01:intron | 35.0% | |
| TTCTTCACTTCTTCTCATCA+TGG | - | Chr3:4398416-4398435 | MsG0380011745.01.T01:CDS | 35.0% | |
| TTGCATTGAATCAATGCAAC+TGG | + | Chr3:4399728-4399747 | None:intergenic | 35.0% | |
| TTGTCAAATACAGGTTGTAG+CGG | - | Chr3:4399955-4399974 | MsG0380011745.01.T01:intron | 35.0% | |
| ! | ACATACATTAGTATTGGGGA+TGG | - | Chr3:4399391-4399410 | MsG0380011745.01.T01:intron | 35.0% |
| ! | ACTGATCTATAGCAGAGTTT+TGG | - | Chr3:4400046-4400065 | MsG0380011745.01.T01:intron | 35.0% |
| !! | GATGGACTAATAGAGAAGTA+TGG | - | Chr3:4399409-4399428 | MsG0380011745.01.T01:intron | 35.0% |
| !!! | AATTTTGAAGCGCCAAATTG+AGG | - | Chr3:4399075-4399094 | MsG0380011745.01.T01:intron | 35.0% |
| !!! | ACGTTATTTTTCACAATCCG+CGG | - | Chr3:4400015-4400034 | MsG0380011745.01.T01:intron | 35.0% |
| !!! | AGTTTTGTTGAGAAGAAGCT+TGG | + | Chr3:4398196-4398215 | None:intergenic | 35.0% |
| AAATGCTCCACAACATTCCT+TGG | + | Chr3:4400265-4400284 | None:intergenic | 40.0% | |
| AAGTTTATCGAAACACAGCC+AGG | - | Chr3:4399362-4399381 | MsG0380011745.01.T01:intron | 40.0% | |
| AATGCTCCACAACATTCCTT+GGG | + | Chr3:4400264-4400283 | None:intergenic | 40.0% | |
| ACATACTCCATCTCTAGTGT+TGG | - | Chr3:4400485-4400504 | MsG0380011745.01.T01:CDS | 40.0% | |
| ACGTTCGTTATTGTTGATGC+GGG | - | Chr3:4400628-4400647 | MsG0380011745.01.T01:five_prime_UTR | 40.0% | |
| ATACATGGAAGCCACAAAGA+CGG | + | Chr3:4399472-4399491 | None:intergenic | 40.0% | |
| CACGTTCGTTATTGTTGATG+CGG | - | Chr3:4400627-4400646 | MsG0380011745.01.T01:five_prime_UTR | 40.0% | |
| TGTCAAATACAGGTTGTAGC+GGG | - | Chr3:4399956-4399975 | MsG0380011745.01.T01:intron | 40.0% | |
| TTTGATGCTGAGACACTTAC+TGG | - | Chr3:4398615-4398634 | MsG0380011745.01.T01:CDS | 40.0% | |
| ! | AGAAGTATGGCTCCAAATTC+TGG | - | Chr3:4399422-4399441 | MsG0380011745.01.T01:intron | 40.0% |
| ! | ATCAGCAAACGCTTCTCTTT+TGG | + | Chr3:4400144-4400163 | None:intergenic | 40.0% |
| !! | TTGATTTGCAGTATCATCGG+CGG | + | Chr3:4400460-4400479 | None:intergenic | 40.0% |
| !!! | ATAGCAGAGTTTTGGTTGTG+TGG | - | Chr3:4400054-4400073 | MsG0380011745.01.T01:intron | 40.0% |
| AAATTCACAGAACAGCCTGC+AGG | + | Chr3:4400186-4400205 | None:intergenic | 45.0% | |
| ACTATGACACTGTTGCGTAG+CGG | - | Chr3:4399980-4399999 | MsG0380011745.01.T01:intron | 45.0% | |
| CTTTATGGAAGATACCCTCC+TGG | - | Chr3:4400366-4400385 | MsG0380011745.01.T01:intron | 45.0% | |
| TTGTTTCACATTGCACCTGC+AGG | - | Chr3:4400168-4400187 | MsG0380011745.01.T01:intron | 45.0% | |
| ! | TTTTCACAATCCGCGGTTGA+CGG | - | Chr3:4400022-4400041 | MsG0380011745.01.T01:intron | 45.0% |
| CTCCACAACATTCCTTGGGA+GGG | + | Chr3:4400260-4400279 | None:intergenic | 50.0% | |
| GTGAGCACCAACACTAGAGA+TGG | + | Chr3:4400495-4400514 | None:intergenic | 50.0% | |
| TACCCTCCCAAGGAATGTTG+TGG | - | Chr3:4400255-4400274 | MsG0380011745.01.T01:intron | 50.0% | |
| ! | GTGTTGTTACATAGCCGCTG+TGG | - | Chr3:4399855-4399874 | MsG0380011745.01.T01:intron | 50.0% |
| !! | CATTCCTTGGGAGGGTACTT+AGG | + | Chr3:4400252-4400271 | None:intergenic | 50.0% |
| AGGACCTAAGTACCCTCCCA+AGG | - | Chr3:4400245-4400264 | MsG0380011745.01.T01:intron | 55.0% | |
| GCATTGTAGTGCTGCCACAG+CGG | + | Chr3:4399872-4399891 | None:intergenic | 55.0% | |
| GCTCCACAACATTCCTTGGG+AGG | + | Chr3:4400261-4400280 | None:intergenic | 55.0% | |
| GTATCATCGGCGGACACTGA+TGG | + | Chr3:4400450-4400469 | None:intergenic | 55.0% | |
| TAGATCAGTGCCGTCAACCG+CGG | + | Chr3:4400035-4400054 | None:intergenic | 55.0% | |
| ! | GAGTGTCGTGAAGGGAAGGA+AGG | - | Chr3:4400402-4400421 | MsG0380011745.01.T01:intron | 55.0% |
| ! | TTGCGAGCGAGTGTCGTGAA+GGG | - | Chr3:4400394-4400413 | MsG0380011745.01.T01:intron | 55.0% |
| ! | TTTGCGAGCGAGTGTCGTGA+AGG | - | Chr3:4400393-4400412 | MsG0380011745.01.T01:intron | 55.0% |
| CACGACACTCGCTCGCAAAG+AGG | + | Chr3:4400392-4400411 | None:intergenic | 60.0% | |
| TCATCGGCGGACACTGATGG+TGG | + | Chr3:4400447-4400466 | None:intergenic | 60.0% | |
| ! | GAGCGAGTGTCGTGAAGGGA+AGG | - | Chr3:4400398-4400417 | MsG0380011745.01.T01:intron | 60.0% |
| CACTCGCTCGCAAAGAGGCC+AGG | + | Chr3:4400387-4400406 | None:intergenic | 65.0% | |
| CGCTCGCAAAGAGGCCAGGA+GGG | + | Chr3:4400383-4400402 | None:intergenic | 65.0% | |
| TCGCTCGCAAAGAGGCCAGG+AGG | + | Chr3:4400384-4400403 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 4398178 | 4400768 | 4398178 | ID=MsG0380011745.01;Name=MsG0380011745.01 |
| Chr3 | mRNA | 4398178 | 4400768 | 4398178 | ID=MsG0380011745.01.T01;Parent=MsG0380011745.01;Name=MsG0380011745.01.T01;_AED=0.48;_eAED=0.48;_QI=200|1|1|1|0.5|0.66|3|223|170 |
| Chr3 | exon | 4400283 | 4400339 | 4400283 | ID=MsG0380011745.01.T01:exon:1104;Parent=MsG0380011745.01.T01 |
| Chr3 | exon | 4400469 | 4400768 | 4400469 | ID=MsG0380011745.01.T01:exon:1103;Parent=MsG0380011745.01.T01 |
| Chr3 | five_prime_UTR | 4400569 | 4400768 | 4400569 | ID=MsG0380011745.01.T01:five_prime_utr;Parent=MsG0380011745.01.T01 |
| Chr3 | CDS | 4400469 | 4400568 | 4400469 | ID=MsG0380011745.01.T01:cds;Parent=MsG0380011745.01.T01 |
| Chr3 | CDS | 4400283 | 4400339 | 4400283 | ID=MsG0380011745.01.T01:cds;Parent=MsG0380011745.01.T01 |
| Chr3 | CDS | 4398401 | 4398756 | 4398401 | ID=MsG0380011745.01.T01:cds;Parent=MsG0380011745.01.T01 |
| Chr3 | three_prime_UTR | 4398178 | 4398400 | 4398178 | ID=MsG0380011745.01.T01:three_prime_utr;Parent=MsG0380011745.01.T01 |
| Chr3 | mRNA | 4398178 | 4400568 | 4398178 | ID=MsG0380011745.01.T02;Parent=MsG0380011745.01;Name=MsG0380011745.01.T02;_AED=0.49;_eAED=0.49;_QI=0|0.5|0.33|1|0.5|0.33|3|223|165 |
| Chr3 | exon | 4400283 | 4400346 | 4400283 | ID=MsG0380011745.01.T02:exon:1107;Parent=MsG0380011745.01.T02 |
| Chr3 | exon | 4400491 | 4400568 | 4400491 | ID=MsG0380011745.01.T02:exon:1106;Parent=MsG0380011745.01.T02 |
| Chr3 | CDS | 4400491 | 4400568 | 4400491 | ID=MsG0380011745.01.T02:cds;Parent=MsG0380011745.01.T02 |
| Chr3 | CDS | 4400283 | 4400346 | 4400283 | ID=MsG0380011745.01.T02:cds;Parent=MsG0380011745.01.T02 |
| Chr3 | CDS | 4398401 | 4398756 | 4398401 | ID=MsG0380011745.01.T02:cds;Parent=MsG0380011745.01.T02 |
| Chr3 | three_prime_UTR | 4398178 | 4398400 | 4398178 | ID=MsG0380011745.01.T02:three_prime_utr;Parent=MsG0380011745.01.T02 |
| Chr3 | mRNA | 4398178 | 4400349 | 4398178 | ID=MsG0380011745.01.T03;Parent=MsG0380011745.01;Name=MsG0380011745.01.T03;_AED=0.49;_eAED=0.49;_QI=0|1|0.5|1|1|1|2|223|140 |
| Chr3 | exon | 4400283 | 4400349 | 4400283 | ID=MsG0380011745.01.T03:exon:1108;Parent=MsG0380011745.01.T03 |
| Chr3 | CDS | 4400283 | 4400349 | 4400283 | ID=MsG0380011745.01.T03:cds;Parent=MsG0380011745.01.T03 |
| Chr3 | CDS | 4398401 | 4398756 | 4398401 | ID=MsG0380011745.01.T03:cds;Parent=MsG0380011745.01.T03 |
| Chr3 | three_prime_UTR | 4398178 | 4398400 | 4398178 | ID=MsG0380011745.01.T03:three_prime_utr;Parent=MsG0380011745.01.T03 |
| Chr3 | mRNA | 4398401 | 4398784 | 4398401 | ID=MsG0380011745.01.T04;Parent=MsG0380011745.01;Name=MsG0380011745.01.T04;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|127 |
| Chr3 | exon | 4398401 | 4398784 | 4398401 | ID=MsG0380011745.01.T04:exon:1109;Parent=MsG0380011745.01.T04 |
| Chr3 | CDS | 4398401 | 4398784 | 4398401 | ID=MsG0380011745.01.T04:cds;Parent=MsG0380011745.01.T04 |
| Gene Sequence |
| Protein sequence |
