Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011796.01.T01 | XP_003598354.1 | 96.894 | 322 | 10 | 0 | 1 | 322 | 1 | 322 | 0 | 647 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011796.01.T01 | Q9LES3 | 52.396 | 313 | 120 | 8 | 14 | 322 | 10 | 297 | 1.96E-87 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011796.01.T01 | G7IVG7 | 96.894 | 322 | 10 | 0 | 1 | 322 | 1 | 322 | 0.0 | 647 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380011796.01 | MsG0380011934.01 | 0.890945 | 6.223720e-74 | 5.346157e-70 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0380011796.01 | MsG0380011934.01 | PPI |
| MsG0380011796.01 | MsG0880043905.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011796.01.T01 | MTR_3g010660 | 96.894 | 322 | 10 | 0 | 1 | 322 | 1 | 322 | 0.0 | 647 |
| MsG0380011796.01.T01 | MTR_8g043960 | 65.260 | 308 | 92 | 4 | 16 | 322 | 20 | 313 | 6.80e-138 | 393 |
| MsG0380011796.01.T01 | MTR_7g088090 | 49.530 | 319 | 127 | 9 | 20 | 320 | 16 | 318 | 1.01e-83 | 256 |
| MsG0380011796.01.T01 | MTR_6g026800 | 50.621 | 322 | 126 | 9 | 19 | 322 | 15 | 321 | 3.76e-80 | 246 |
| MsG0380011796.01.T01 | MTR_4g085910 | 36.176 | 340 | 154 | 13 | 20 | 301 | 18 | 352 | 2.37e-42 | 150 |
| MsG0380011796.01.T01 | MTR_5g088230 | 46.067 | 178 | 76 | 6 | 1 | 170 | 1 | 166 | 1.50e-34 | 127 |
| MsG0380011796.01.T01 | MTR_5g088230 | 57.955 | 88 | 37 | 0 | 235 | 322 | 182 | 269 | 7.00e-23 | 96.3 |
| MsG0380011796.01.T01 | MTR_2g086390 | 33.968 | 315 | 139 | 10 | 23 | 320 | 11 | 273 | 1.38e-33 | 125 |
| MsG0380011796.01.T01 | MTR_2g086390 | 34.256 | 289 | 127 | 9 | 23 | 294 | 11 | 253 | 1.81e-33 | 125 |
| MsG0380011796.01.T01 | MTR_5g088230 | 46.629 | 178 | 70 | 7 | 1 | 170 | 1 | 161 | 2.92e-33 | 124 |
| MsG0380011796.01.T01 | MTR_5g088230 | 57.955 | 88 | 37 | 0 | 235 | 322 | 177 | 264 | 7.90e-23 | 95.9 |
| MsG0380011796.01.T01 | MTR_2g086340 | 36.271 | 295 | 152 | 10 | 12 | 294 | 14 | 284 | 1.21e-27 | 110 |
| MsG0380011796.01.T01 | MTR_3g101780 | 48.361 | 122 | 56 | 2 | 19 | 138 | 26 | 142 | 9.58e-27 | 109 |
| MsG0380011796.01.T01 | MTR_3g101780 | 42.202 | 109 | 60 | 1 | 189 | 297 | 293 | 398 | 1.67e-17 | 83.2 |
| MsG0380011796.01.T01 | MTR_7g104480 | 43.182 | 132 | 56 | 3 | 26 | 138 | 45 | 176 | 2.38e-20 | 91.3 |
| MsG0380011796.01.T01 | MTR_5g060990 | 29.054 | 296 | 167 | 8 | 16 | 273 | 8 | 298 | 1.20e-19 | 87.8 |
| MsG0380011796.01.T01 | MTR_4g094390 | 42.718 | 103 | 53 | 2 | 196 | 296 | 77 | 175 | 1.04e-13 | 69.3 |
| MsG0380011796.01.T01 | MTR_8g075130 | 46.988 | 83 | 40 | 2 | 243 | 322 | 97 | 178 | 6.09e-13 | 66.6 |
| MsG0380011796.01.T01 | MTR_7g015990 | 68.000 | 50 | 13 | 1 | 251 | 297 | 120 | 169 | 3.00e-12 | 65.1 |
| MsG0380011796.01.T01 | MTR_1g098590 | 62.745 | 51 | 19 | 0 | 246 | 296 | 157 | 207 | 3.06e-12 | 65.9 |
| MsG0380011796.01.T01 | MTR_1g098590 | 62.745 | 51 | 19 | 0 | 246 | 296 | 157 | 207 | 3.98e-12 | 65.1 |
| MsG0380011796.01.T01 | MTR_1g098590 | 62.745 | 51 | 19 | 0 | 246 | 296 | 157 | 207 | 4.62e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011796.01.T01 | AT3G56850 | 52.396 | 313 | 120 | 8 | 14 | 322 | 10 | 297 | 1.99e-88 | 267 |
| MsG0380011796.01.T01 | AT2G41070 | 48.418 | 316 | 101 | 10 | 10 | 322 | 6 | 262 | 4.55e-75 | 231 |
| MsG0380011796.01.T01 | AT2G41070 | 48.418 | 316 | 101 | 10 | 10 | 322 | 6 | 262 | 4.55e-75 | 231 |
| MsG0380011796.01.T01 | AT2G41070 | 48.418 | 316 | 101 | 10 | 10 | 322 | 6 | 262 | 4.55e-75 | 231 |
| MsG0380011796.01.T01 | AT2G41070 | 48.418 | 316 | 101 | 10 | 10 | 322 | 15 | 271 | 4.71e-75 | 232 |
| MsG0380011796.01.T01 | AT2G41070 | 47.931 | 290 | 89 | 10 | 10 | 296 | 6 | 236 | 3.45e-64 | 203 |
| MsG0380011796.01.T01 | AT1G49720 | 34.320 | 338 | 162 | 7 | 18 | 296 | 21 | 357 | 3.77e-45 | 159 |
| MsG0380011796.01.T01 | AT1G49720 | 34.320 | 338 | 162 | 7 | 18 | 296 | 21 | 357 | 4.02e-45 | 158 |
| MsG0380011796.01.T01 | AT1G49720 | 34.320 | 338 | 162 | 7 | 18 | 296 | 21 | 357 | 4.02e-45 | 158 |
| MsG0380011796.01.T01 | AT2G36270 | 32.346 | 405 | 169 | 13 | 12 | 315 | 30 | 430 | 4.40e-37 | 138 |
| MsG0380011796.01.T01 | AT2G36270 | 32.346 | 405 | 169 | 13 | 12 | 315 | 30 | 430 | 4.40e-37 | 138 |
| MsG0380011796.01.T01 | AT2G36270 | 32.976 | 373 | 155 | 12 | 12 | 293 | 30 | 398 | 2.53e-35 | 133 |
| MsG0380011796.01.T01 | AT3G44460 | 37.705 | 305 | 131 | 13 | 14 | 294 | 22 | 291 | 1.82e-29 | 115 |
| MsG0380011796.01.T01 | AT3G19290 | 43.046 | 151 | 65 | 3 | 9 | 138 | 21 | 171 | 3.01e-25 | 105 |
| MsG0380011796.01.T01 | AT3G19290 | 43.046 | 151 | 65 | 3 | 9 | 138 | 21 | 171 | 3.25e-25 | 105 |
| MsG0380011796.01.T01 | AT3G19290 | 37.857 | 140 | 64 | 4 | 178 | 296 | 260 | 397 | 6.27e-14 | 72.4 |
| MsG0380011796.01.T01 | AT3G19290 | 43.046 | 151 | 65 | 3 | 9 | 138 | 21 | 171 | 4.19e-25 | 105 |
| MsG0380011796.01.T01 | AT3G19290 | 37.857 | 140 | 64 | 4 | 178 | 296 | 260 | 397 | 7.74e-14 | 72.4 |
| MsG0380011796.01.T01 | AT3G19290 | 43.046 | 151 | 65 | 3 | 9 | 138 | 21 | 171 | 4.19e-25 | 105 |
| MsG0380011796.01.T01 | AT3G19290 | 37.857 | 140 | 64 | 4 | 178 | 296 | 260 | 397 | 7.74e-14 | 72.4 |
| MsG0380011796.01.T01 | AT3G19290 | 43.046 | 151 | 65 | 3 | 9 | 138 | 21 | 171 | 4.31e-25 | 105 |
| MsG0380011796.01.T01 | AT3G19290 | 37.857 | 140 | 64 | 4 | 178 | 296 | 260 | 397 | 7.34e-14 | 72.4 |
| MsG0380011796.01.T01 | AT5G42910 | 28.533 | 368 | 175 | 13 | 20 | 319 | 20 | 367 | 2.10e-23 | 99.4 |
| MsG0380011796.01.T01 | AT4G34000 | 34.715 | 193 | 77 | 6 | 19 | 171 | 26 | 209 | 8.30e-22 | 95.9 |
| MsG0380011796.01.T01 | AT4G34000 | 60.000 | 60 | 24 | 0 | 237 | 296 | 359 | 418 | 1.82e-15 | 77.0 |
| MsG0380011796.01.T01 | AT4G34000 | 34.197 | 193 | 78 | 5 | 19 | 171 | 26 | 209 | 1.08e-21 | 95.5 |
| MsG0380011796.01.T01 | AT4G34000 | 60.000 | 65 | 25 | 1 | 237 | 301 | 359 | 422 | 2.39e-15 | 77.0 |
| MsG0380011796.01.T01 | AT4G34000 | 34.197 | 193 | 78 | 5 | 19 | 171 | 26 | 209 | 1.08e-21 | 95.5 |
| MsG0380011796.01.T01 | AT4G34000 | 60.000 | 65 | 25 | 1 | 237 | 301 | 359 | 422 | 2.39e-15 | 77.0 |
| MsG0380011796.01.T01 | AT4G34000 | 34.197 | 193 | 78 | 5 | 19 | 171 | 26 | 209 | 1.08e-21 | 95.5 |
| MsG0380011796.01.T01 | AT4G34000 | 60.000 | 65 | 25 | 1 | 237 | 301 | 359 | 422 | 2.39e-15 | 77.0 |
| MsG0380011796.01.T01 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 2.26e-21 | 94.0 |
| MsG0380011796.01.T01 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 2.26e-21 | 94.0 |
| MsG0380011796.01.T01 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 3.93e-21 | 93.6 |
| MsG0380011796.01.T01 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 3.93e-21 | 93.6 |
| MsG0380011796.01.T01 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 3.93e-21 | 93.6 |
| MsG0380011796.01.T01 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 3.93e-21 | 93.6 |
| MsG0380011796.01.T01 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 4.09e-21 | 93.6 |
| MsG0380011796.01.T01 | AT1G45249 | 39.860 | 143 | 61 | 5 | 195 | 320 | 280 | 414 | 9.87e-18 | 83.6 |
| MsG0380011796.01.T01 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 36 | 166 | 4.27e-21 | 93.6 |
| MsG0380011796.01.T01 | AT1G45249 | 39.860 | 143 | 61 | 5 | 195 | 320 | 295 | 429 | 1.38e-17 | 83.6 |
| MsG0380011796.01.T01 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 36 | 166 | 4.27e-21 | 93.6 |
| MsG0380011796.01.T01 | AT1G45249 | 39.860 | 143 | 61 | 5 | 195 | 320 | 295 | 429 | 1.38e-17 | 83.6 |
| MsG0380011796.01.T01 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 5.30e-21 | 93.2 |
| MsG0380011796.01.T01 | AT1G45249 | 37.013 | 154 | 61 | 6 | 195 | 320 | 280 | 425 | 6.98e-15 | 75.5 |
| MsG0380011796.01.T01 | AT4G35900 | 51.163 | 86 | 40 | 2 | 237 | 322 | 202 | 285 | 2.08e-16 | 78.6 |
| MsG0380011796.01.T01 | AT2G17770 | 48.837 | 86 | 42 | 2 | 237 | 322 | 112 | 195 | 2.36e-14 | 70.9 |
| MsG0380011796.01.T01 | AT5G44080 | 32.353 | 204 | 91 | 8 | 96 | 297 | 120 | 278 | 2.71e-14 | 72.8 |
| MsG0380011796.01.T01 | AT1G03970 | 31.373 | 204 | 84 | 6 | 96 | 297 | 85 | 234 | 3.37e-14 | 72.0 |
Find 73 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGCGACGAAGCTGGCATTT+AGG | 0.252772 | 3:+5378655 | None:intergenic |
| AGAAGACGGTTGATGAAGTT+TGG | 0.321664 | 3:-5380353 | MsG0380011796.01.T01:CDS |
| GATTCAACAACACTGACTTT+AGG | 0.341594 | 3:+5380180 | None:intergenic |
| TTTGGGTGAGATGACATTAG+AGG | 0.364587 | 3:-5380271 | MsG0380011796.01.T01:CDS |
| TCAACCGTCTTCTTGCTTAA+CGG | 0.378968 | 3:+5380363 | None:intergenic |
| ACGAAGCTGGCATTTAGGTT+CGG | 0.387515 | 3:+5378660 | None:intergenic |
| TCAAGAGATGCAGTCTACTT+TGG | 0.394291 | 3:-5380289 | MsG0380011796.01.T01:CDS |
| GCCACCTGACCATCTGTATA+CGG | 0.395127 | 3:+5379997 | None:intergenic |
| CGAAGCTGGCATTTAGGTTC+GGG | 0.399153 | 3:+5378661 | None:intergenic |
| GGTTAAAGCAGGCGTTGTTT+CGG | 0.403853 | 3:-5380241 | MsG0380011796.01.T01:CDS |
| CAACCTAATCTGTCGTTAAC+CGG | 0.406252 | 3:-5380387 | MsG0380011796.01.T01:CDS |
| CAAGAGATGCAGTCTACTTT+GGG | 0.419918 | 3:-5380288 | MsG0380011796.01.T01:CDS |
| CAGAATCACTTAGGTGACTT+AGG | 0.427650 | 3:-5380534 | MsG0380011796.01.T01:CDS |
| AGAAGAGGATGATTAAGAAT+CGG | 0.435534 | 3:-5379876 | MsG0380011796.01.T01:CDS |
| TCAAGGTTCATACTACTTAG+TGG | 0.444599 | 3:+5380507 | None:intergenic |
| CCAGAGGCTGGAATTGCGGT+TGG | 0.448828 | 3:+5380598 | None:intergenic |
| GAAGAGGATGATTAAGAATC+GGG | 0.454965 | 3:-5379875 | MsG0380011796.01.T01:CDS |
| CAGTCATTGCACATGGCAGC+CGG | 0.472274 | 3:-5380039 | MsG0380011796.01.T01:CDS |
| CAAAGTCTCGCGTCTGGAAG+AGG | 0.475416 | 3:-5379690 | MsG0380011796.01.T01:CDS |
| CGCGCCAGAGGCTGGAATTG+CGG | 0.479085 | 3:+5380594 | None:intergenic |
| GGACCGGTTAACGACAGATT+AGG | 0.482657 | 3:+5380384 | None:intergenic |
| GCGCTCAAGAGCAAGGAAAC+AGG | 0.483729 | 3:-5379842 | MsG0380011796.01.T01:intron |
| GGAGATCAAAGTCTCGCGTC+TGG | 0.487266 | 3:-5379696 | MsG0380011796.01.T01:CDS |
| CATGGCAGCCGGTGCTCCAT+CGG | 0.496616 | 3:-5380028 | MsG0380011796.01.T01:CDS |
| CCAACCGCAATTCCAGCCTC+TGG | 0.504611 | 3:-5380598 | MsG0380011796.01.T01:CDS |
| GATGAAGTTCAGAATCACTT+AGG | 0.504785 | 3:-5380543 | MsG0380011796.01.T01:CDS |
| TCTGAACTTCATCAAGGGTA+AGG | 0.505070 | 3:+5380553 | None:intergenic |
| GTCCTCTCAATCATGTCCTC+CGG | 0.505376 | 3:+5379913 | None:intergenic |
| ATCTGCGAGAAAGCGGGGAC+CGG | 0.507079 | 3:-5379932 | MsG0380011796.01.T01:CDS |
| CGTCTTCTTGCTTAACGGAC+CGG | 0.507684 | 3:+5380368 | None:intergenic |
| TGGCATTTAGGTTCGGGTGG+TGG | 0.513608 | 3:+5378667 | None:intergenic |
| TCAGATAAGTTTCCTACCAC+TGG | 0.525861 | 3:+5379964 | None:intergenic |
| GACTGAGCTATGATCTGGCT+CGG | 0.527606 | 3:+5380057 | None:intergenic |
| CTGTTGAGAGGAAGCAGAAG+AGG | 0.527853 | 3:-5379891 | MsG0380011796.01.T01:CDS |
| TACAGATGGTCAGGTGGCGT+TGG | 0.529554 | 3:-5379992 | MsG0380011796.01.T01:CDS |
| ACAGAAATCTGCGAGAAAGC+GGG | 0.534375 | 3:-5379938 | MsG0380011796.01.T01:CDS |
| AACGAGGACACAGCGCAAGC+CGG | 0.540740 | 3:-5380429 | MsG0380011796.01.T01:CDS |
| AGTGATTCTGAACTTCATCA+AGG | 0.543380 | 3:+5380547 | None:intergenic |
| AACGCCGTCCGATGGAGCAC+CGG | 0.546844 | 3:+5380020 | None:intergenic |
| CTGCTGCGCGCTCAAGAGCA+AGG | 0.547968 | 3:-5379849 | MsG0380011796.01.T01:CDS |
| CGCAATTCCAGCCTCTGGCG+CGG | 0.552340 | 3:-5380593 | MsG0380011796.01.T01:CDS |
| CGTTCCGTATACAGATGGTC+AGG | 0.553919 | 3:-5380001 | MsG0380011796.01.T01:CDS |
| TGCTGTGGATGCTGATAGTG+TGG | 0.563676 | 3:+5380102 | None:intergenic |
| TTAGGCATACACAACTGAGT+TGG | 0.564109 | 3:-5379717 | MsG0380011796.01.T01:intron |
| TGCGAGAAAGCGGGGACCGG+AGG | 0.566566 | 3:-5379929 | MsG0380011796.01.T01:CDS |
| GGCAAACCAATCAATTCGCA+TGG | 0.566719 | 3:-5380454 | MsG0380011796.01.T01:CDS |
| CACAGAAATCTGCGAGAAAG+CGG | 0.574514 | 3:-5379939 | MsG0380011796.01.T01:CDS |
| GTATACGGAACGCCGTCCGA+TGG | 0.577145 | 3:+5380012 | None:intergenic |
| CTGATGATACGCGACGAAGC+TGG | 0.577434 | 3:+5378647 | None:intergenic |
| TGAAAAGCTGAGGAAAGAGA+AGG | 0.578797 | 3:-5379663 | MsG0380011796.01.T01:intron |
| GCAGCCGGTGCTCCATCGGA+CGG | 0.579352 | 3:-5380024 | MsG0380011796.01.T01:CDS |
| GCATCCACAGCAAAGTGTGA+TGG | 0.583686 | 3:-5380091 | MsG0380011796.01.T01:CDS |
| AGCTGGCATTTAGGTTCGGG+TGG | 0.592805 | 3:+5378664 | None:intergenic |
| GCAATGACTGAGCTATGATC+TGG | 0.599628 | 3:+5380052 | None:intergenic |
| TACTGTATCCACGGACCATG+TGG | 0.602459 | 3:+5380132 | None:intergenic |
| ACAACACTGACTTTAGGAGT+AGG | 0.608724 | 3:+5380186 | None:intergenic |
| ATCAATTCGCATGGAAAACG+AGG | 0.609101 | 3:-5380445 | MsG0380011796.01.T01:CDS |
| GTGATTCTGAACTTCATCAA+GGG | 0.610620 | 3:+5380548 | None:intergenic |
| CATAGCTCAGTCATTGCACA+TGG | 0.615121 | 3:-5380046 | MsG0380011796.01.T01:CDS |
| GACCGGAGGACATGATTGAG+AGG | 0.620098 | 3:-5379915 | MsG0380011796.01.T01:CDS |
| GCGTTGGCTTCACCAGTGGT+AGG | 0.620523 | 3:-5379976 | MsG0380011796.01.T01:CDS |
| GTCGCCATCACACTTTGCTG+TGG | 0.628005 | 3:+5380087 | None:intergenic |
| AAGAGGAAAATGAAAAGCTG+AGG | 0.635284 | 3:-5379673 | MsG0380011796.01.T01:CDS |
| GGTTGTGCATACTGTATCCA+CGG | 0.641304 | 3:+5380123 | None:intergenic |
| TGATTGAGAGGACTGTTGAG+AGG | 0.642725 | 3:-5379903 | MsG0380011796.01.T01:CDS |
| GGTGGCGTTGGCTTCACCAG+TGG | 0.643645 | 3:-5379980 | MsG0380011796.01.T01:CDS |
| CAGAAATCTGCGAGAAAGCG+GGG | 0.644702 | 3:-5379937 | MsG0380011796.01.T01:CDS |
| CCAACAAAACAACGATCATG+AGG | 0.650306 | 3:-5380322 | MsG0380011796.01.T01:CDS |
| GACGGCGTTCCGTATACAGA+TGG | 0.652010 | 3:-5380006 | MsG0380011796.01.T01:CDS |
| TCCGTATACAGATGGTCAGG+TGG | 0.656234 | 3:-5379998 | MsG0380011796.01.T01:CDS |
| CGGTCCGTTAAGCAAGAAGA+CGG | 0.656636 | 3:-5380367 | MsG0380011796.01.T01:CDS |
| ACAAAACAACGATCATGAGG+AGG | 0.694318 | 3:-5380319 | MsG0380011796.01.T01:CDS |
| GGACCATGTGGAGAAAACTG+TGG | 0.769588 | 3:+5380144 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCAATATCTAAACATT+TGG | - | Chr3:5380291-5380310 | MsG0380011796.01.T01:CDS | 15.0% |
| !! | ATTTACATTCTTAATTCTTA+TGG | - | Chr3:5379761-5379780 | MsG0380011796.01.T01:intron | 15.0% |
| !!! | ATTAACAAAAAGATTTTCAA+TGG | + | Chr3:5379666-5379685 | None:intergenic | 15.0% |
| !!! | TTATTTTCTCAAATTATTAC+CGG | - | Chr3:5380187-5380206 | MsG0380011796.01.T01:CDS | 15.0% |
| !! | AAATTAGAACTTCAATAACA+TGG | + | Chr3:5379483-5379502 | None:intergenic | 20.0% |
| !! | TACTTAATATCAAGAAACTA+AGG | + | Chr3:5379702-5379721 | None:intergenic | 20.0% |
| !! | TATTCTGATATTTCATGTAT+TGG | - | Chr3:5379990-5380009 | MsG0380011796.01.T01:CDS | 20.0% |
| !! | TGAAATATCAGAATAATTCT+AGG | + | Chr3:5379985-5380004 | None:intergenic | 20.0% |
| !! | TTGATTGTACTATATAAACA+AGG | + | Chr3:5380334-5380353 | None:intergenic | 20.0% |
| !! | TTTGCTTAAAAGTTATAGTT+TGG | - | Chr3:5379638-5379657 | MsG0380011796.01.T01:intron | 20.0% |
| !!! | ACAAATTCAAATTTTTGGAA+TGG | - | Chr3:5380480-5380499 | MsG0380011796.01.T01:CDS | 20.0% |
| !!! | ATGCTACAAATTCAAATTTT+TGG | - | Chr3:5380475-5380494 | MsG0380011796.01.T01:CDS | 20.0% |
| !!! | GAAATTTGAAATCAGTAAAT+TGG | + | Chr3:5380277-5380296 | None:intergenic | 20.0% |
| !!! | TACTTATTGACTGTTATTAT+TGG | - | Chr3:5380050-5380069 | MsG0380011796.01.T01:CDS | 20.0% |
| ! | AATACATATGAAGGATTGAA+AGG | + | Chr3:5380088-5380107 | None:intergenic | 25.0% |
| ! | AATGAGTAAAAAGATCATGA+AGG | - | Chr3:5380024-5380043 | MsG0380011796.01.T01:CDS | 25.0% |
| ! | ATGGAAAAAGTTGTTTACTT+GGG | + | Chr3:5379520-5379539 | None:intergenic | 25.0% |
| ! | CTAATTACAGTTATAATCCA+TGG | + | Chr3:5379539-5379558 | None:intergenic | 25.0% |
| ! | GCAACAAGATTAATAAACAA+AGG | + | Chr3:5380406-5380425 | None:intergenic | 25.0% |
| ! | TCTTAATTCTTATGGTGTTT+GGG | - | Chr3:5379769-5379788 | MsG0380011796.01.T01:intron | 25.0% |
| ! | TTCTTAATTCTTATGGTGTT+TGG | - | Chr3:5379768-5379787 | MsG0380011796.01.T01:intron | 25.0% |
| !! | ATCTCAATTTAGTTTCTGTA+CGG | - | Chr3:5379724-5379743 | MsG0380011796.01.T01:intron | 25.0% |
| !! | CATGGATTATAACTGTAATT+AGG | - | Chr3:5379537-5379556 | MsG0380011796.01.T01:intron | 25.0% |
| !! | TTACTGCTTAGAATTTTCTT+TGG | - | Chr3:5379828-5379847 | MsG0380011796.01.T01:intron | 25.0% |
| AGAAGAGGATGATTAAGAAT+CGG | - | Chr3:5379396-5379415 | MsG0380011796.01.T01:intron | 30.0% | |
| AGTGTCAGAAATACATATGA+AGG | + | Chr3:5380097-5380116 | None:intergenic | 30.0% | |
| CATGGAAAAAGTTGTTTACT+TGG | + | Chr3:5379521-5379540 | None:intergenic | 30.0% | |
| TGATATTGACACATAAACAC+CGG | + | Chr3:5380209-5380228 | None:intergenic | 30.0% | |
| TTGGAATGGATGTATCTTTA+TGG | - | Chr3:5380494-5380513 | MsG0380011796.01.T01:CDS | 30.0% | |
| TTTCTGACACTTCAAATTCA+AGG | - | Chr3:5380106-5380125 | MsG0380011796.01.T01:CDS | 30.0% | |
| ! | CTGATATTTCATGTATTGGT+TGG | - | Chr3:5379994-5380013 | MsG0380011796.01.T01:CDS | 30.0% |
| ! | TTTTGCATTAAGCATTTGGA+TGG | - | Chr3:5380447-5380466 | MsG0380011796.01.T01:CDS | 30.0% |
| !! | CAAGTAAACAACTTTTTCCA+TGG | - | Chr3:5379519-5379538 | MsG0380011796.01.T01:intron | 30.0% |
| !!! | GATGACATTAGAGGATTTTT+TGG | - | Chr3:5379010-5379029 | MsG0380011796.01.T01:intron | 30.0% |
| !!! | TTGCATAGTGTTTTTTGAAG+AGG | - | Chr3:5380422-5380441 | MsG0380011796.01.T01:CDS | 30.0% |
| AAGAGGAAAATGAAAAGCTG+AGG | - | Chr3:5379599-5379618 | MsG0380011796.01.T01:intron | 35.0% | |
| AAGTAAGCACAAGACAGTAA+AGG | + | Chr3:5379870-5379889 | None:intergenic | 35.0% | |
| ACGTTGAAAAACAACTTGTC+CGG | + | Chr3:5378865-5378884 | None:intergenic | 35.0% | |
| AGTAAGCACAAGACAGTAAA+GGG | + | Chr3:5379869-5379888 | None:intergenic | 35.0% | |
| AGTGATTCTGAACTTCATCA+AGG | + | Chr3:5378728-5378747 | None:intergenic | 35.0% | |
| AGTTGTTTACTTGGGAGAAA+CGG | + | Chr3:5379512-5379531 | None:intergenic | 35.0% | |
| GAAATTGTGCACTTTGATGT+TGG | - | Chr3:5379791-5379810 | MsG0380011796.01.T01:intron | 35.0% | |
| GAAGAGGATGATTAAGAATC+GGG | - | Chr3:5379397-5379416 | MsG0380011796.01.T01:intron | 35.0% | |
| GATGAAGTTCAGAATCACTT+AGG | - | Chr3:5378729-5378748 | MsG0380011796.01.T01:intron | 35.0% | |
| GTAAAGGGTCACATATTCTA+TGG | + | Chr3:5379854-5379873 | None:intergenic | 35.0% | |
| GTGATTCTGAACTTCATCAA+GGG | + | Chr3:5378727-5378746 | None:intergenic | 35.0% | |
| TCAAGGTTCATACTACTTAG+TGG | + | Chr3:5378768-5378787 | None:intergenic | 35.0% | |
| TGTCAATATCATGTCAGTGT+CGG | + | Chr3:5380144-5380163 | None:intergenic | 35.0% | |
| ! | ACGAGCTTCTGAAAAATGTA+TGG | - | Chr3:5378787-5378806 | MsG0380011796.01.T01:intron | 35.0% |
| ! | GAAAAATGTATGGACTGTTG+AGG | - | Chr3:5378797-5378816 | MsG0380011796.01.T01:intron | 35.0% |
| ! | GGCATTTTGCATTAAGCATT+TGG | - | Chr3:5380443-5380462 | MsG0380011796.01.T01:CDS | 35.0% |
| ! | GTTTTACATACTCAACTTGC+AGG | - | Chr3:5380556-5380575 | MsG0380011796.01.T01:CDS | 35.0% |
| !! | ACTGTCTTGTGCTTACTTTT+AGG | - | Chr3:5379872-5379891 | MsG0380011796.01.T01:CDS | 35.0% |
| !! | GATTCAACAACACTGACTTT+AGG | + | Chr3:5379095-5379114 | None:intergenic | 35.0% |
| !!! | GAGGATTTTTTGGTTAAAGC+AGG | - | Chr3:5379020-5379039 | MsG0380011796.01.T01:intron | 35.0% |
| ACAAAACAACGATCATGAGG+AGG | - | Chr3:5378953-5378972 | MsG0380011796.01.T01:intron | 40.0% | |
| ATCAATTCGCATGGAAAACG+AGG | - | Chr3:5378827-5378846 | MsG0380011796.01.T01:intron | 40.0% | |
| CAACCTAATCTGTCGTTAAC+CGG | - | Chr3:5378885-5378904 | MsG0380011796.01.T01:intron | 40.0% | |
| CAAGAGATGCAGTCTACTTT+GGG | - | Chr3:5378984-5379003 | MsG0380011796.01.T01:intron | 40.0% | |
| CAGAATCACTTAGGTGACTT+AGG | - | Chr3:5378738-5378757 | MsG0380011796.01.T01:intron | 40.0% | |
| CCAACAAAACAACGATCATG+AGG | - | Chr3:5378950-5378969 | MsG0380011796.01.T01:intron | 40.0% | |
| CTTCAAATTCAAGGCGTGTT+TGG | - | Chr3:5380115-5380134 | MsG0380011796.01.T01:CDS | 40.0% | |
| GTTGTTTACTTGGGAGAAAC+GGG | + | Chr3:5379511-5379530 | None:intergenic | 40.0% | |
| TCAACCGTCTTCTTGCTTAA+CGG | + | Chr3:5378912-5378931 | None:intergenic | 40.0% | |
| TCAAGAGATGCAGTCTACTT+TGG | - | Chr3:5378983-5379002 | MsG0380011796.01.T01:intron | 40.0% | |
| TCAGATAAGTTTCCTACCAC+TGG | + | Chr3:5379311-5379330 | None:intergenic | 40.0% | |
| TCTGAACTTCATCAAGGGTA+AGG | + | Chr3:5378722-5378741 | None:intergenic | 40.0% | |
| TGAAAAGCTGAGGAAAGAGA+AGG | - | Chr3:5379609-5379628 | MsG0380011796.01.T01:intron | 40.0% | |
| TGTCTCTGTCAACACTTCAT+AGG | - | Chr3:5380235-5380254 | MsG0380011796.01.T01:CDS | 40.0% | |
| TTAGGCATACACAACTGAGT+TGG | - | Chr3:5379555-5379574 | MsG0380011796.01.T01:intron | 40.0% | |
| TTTGGGTGAGATGACATTAG+AGG | - | Chr3:5379001-5379020 | MsG0380011796.01.T01:intron | 40.0% | |
| ! | CGTTTTCCATGCGAATTGAT+TGG | + | Chr3:5378827-5378846 | None:intergenic | 40.0% |
| !! | ACAACACTGACTTTAGGAGT+AGG | + | Chr3:5379089-5379108 | None:intergenic | 40.0% |
| !! | AGAAGACGGTTGATGAAGTT+TGG | - | Chr3:5378919-5378938 | MsG0380011796.01.T01:intron | 40.0% |
| !! | CATTTTTCAGAAGCTCGTCA+AGG | + | Chr3:5378785-5378804 | None:intergenic | 40.0% |
| !! | CCTCATGATCGTTGTTTTGT+TGG | + | Chr3:5378953-5378972 | None:intergenic | 40.0% |
| ACAGAAATCTGCGAGAAAGC+GGG | - | Chr3:5379334-5379353 | MsG0380011796.01.T01:intron | 45.0% | |
| CACAGAAATCTGCGAGAAAG+CGG | - | Chr3:5379333-5379352 | MsG0380011796.01.T01:intron | 45.0% | |
| CATAGCTCAGTCATTGCACA+TGG | - | Chr3:5379226-5379245 | MsG0380011796.01.T01:intron | 45.0% | |
| GCAATGACTGAGCTATGATC+TGG | + | Chr3:5379223-5379242 | None:intergenic | 45.0% | |
| GGCAAACCAATCAATTCGCA+TGG | - | Chr3:5378818-5378837 | MsG0380011796.01.T01:intron | 45.0% | |
| GGTTGTGCATACTGTATCCA+CGG | + | Chr3:5379152-5379171 | None:intergenic | 45.0% | |
| TGATTGAGAGGACTGTTGAG+AGG | - | Chr3:5379369-5379388 | MsG0380011796.01.T01:intron | 45.0% | |
| ! | ACGAAGCTGGCATTTAGGTT+CGG | + | Chr3:5380615-5380634 | None:intergenic | 45.0% |
| ! | GGTTAAAGCAGGCGTTGTTT+CGG | - | Chr3:5379031-5379050 | MsG0380011796.01.T01:intron | 45.0% |
| ! | TTGCCACAGTTTTCTCCACA+TGG | - | Chr3:5379125-5379144 | MsG0380011796.01.T01:intron | 45.0% |
| !! | TGAAGTGTTGACAGAGACAC+AGG | + | Chr3:5380234-5380253 | None:intergenic | 45.0% |
| CAGAAATCTGCGAGAAAGCG+GGG | - | Chr3:5379335-5379354 | MsG0380011796.01.T01:intron | 50.0% | |
| CGGTCCGTTAAGCAAGAAGA+CGG | - | Chr3:5378905-5378924 | MsG0380011796.01.T01:intron | 50.0% | |
| CGTTCCGTATACAGATGGTC+AGG | - | Chr3:5379271-5379290 | MsG0380011796.01.T01:intron | 50.0% | |
| CTGTTGAGAGGAAGCAGAAG+AGG | - | Chr3:5379381-5379400 | MsG0380011796.01.T01:intron | 50.0% | |
| GACTGAGCTATGATCTGGCT+CGG | + | Chr3:5379218-5379237 | None:intergenic | 50.0% | |
| GCATCCACAGCAAAGTGTGA+TGG | - | Chr3:5379181-5379200 | MsG0380011796.01.T01:intron | 50.0% | |
| GCCACCTGACCATCTGTATA+CGG | + | Chr3:5379278-5379297 | None:intergenic | 50.0% | |
| GGACCATGTGGAGAAAACTG+TGG | + | Chr3:5379131-5379150 | None:intergenic | 50.0% | |
| GGACCGGTTAACGACAGATT+AGG | + | Chr3:5378891-5378910 | None:intergenic | 50.0% | |
| GTCCTCTCAATCATGTCCTC+CGG | + | Chr3:5379362-5379381 | None:intergenic | 50.0% | |
| TACTGTATCCACGGACCATG+TGG | + | Chr3:5379143-5379162 | None:intergenic | 50.0% | |
| TCCGTATACAGATGGTCAGG+TGG | - | Chr3:5379274-5379293 | MsG0380011796.01.T01:intron | 50.0% | |
| ! | AGTTTTCTCCACATGGTCCG+TGG | - | Chr3:5379132-5379151 | MsG0380011796.01.T01:intron | 50.0% |
| ! | ATTGAATTTTGCCGCGCCAG+AGG | + | Chr3:5378693-5378712 | None:intergenic | 50.0% |
| ! | CGAAGCTGGCATTTAGGTTC+GGG | + | Chr3:5380614-5380633 | None:intergenic | 50.0% |
| ! | CGTCTTCTTGCTTAACGGAC+CGG | + | Chr3:5378907-5378926 | None:intergenic | 50.0% |
| ! | TGCTGTGGATGCTGATAGTG+TGG | + | Chr3:5379173-5379192 | None:intergenic | 50.0% |
| ACGCGACGAAGCTGGCATTT+AGG | + | Chr3:5380620-5380639 | None:intergenic | 55.0% | |
| CAAAGTCTCGCGTCTGGAAG+AGG | - | Chr3:5379582-5379601 | MsG0380011796.01.T01:intron | 55.0% | |
| CAGTCATTGCACATGGCAGC+CGG | - | Chr3:5379233-5379252 | MsG0380011796.01.T01:intron | 55.0% | |
| CTGATGATACGCGACGAAGC+TGG | + | Chr3:5380628-5380647 | None:intergenic | 55.0% | |
| GACCGGAGGACATGATTGAG+AGG | - | Chr3:5379357-5379376 | MsG0380011796.01.T01:intron | 55.0% | |
| GACGGCGTTCCGTATACAGA+TGG | - | Chr3:5379266-5379285 | MsG0380011796.01.T01:intron | 55.0% | |
| GCGCTCAAGAGCAAGGAAAC+AGG | - | Chr3:5379430-5379449 | MsG0380011796.01.T01:intron | 55.0% | |
| GGAGATCAAAGTCTCGCGTC+TGG | - | Chr3:5379576-5379595 | MsG0380011796.01.T01:intron | 55.0% | |
| GTCGCCATCACACTTTGCTG+TGG | + | Chr3:5379188-5379207 | None:intergenic | 55.0% | |
| TACAGATGGTCAGGTGGCGT+TGG | - | Chr3:5379280-5379299 | MsG0380011796.01.T01:intron | 55.0% | |
| ! | AGCTGGCATTTAGGTTCGGG+TGG | + | Chr3:5380611-5380630 | None:intergenic | 55.0% |
| ! | TGGCATTTAGGTTCGGGTGG+TGG | + | Chr3:5380608-5380627 | None:intergenic | 55.0% |
| AACGAGGACACAGCGCAAGC+CGG | - | Chr3:5378843-5378862 | MsG0380011796.01.T01:intron | 60.0% | |
| ATCTGCGAGAAAGCGGGGAC+CGG | - | Chr3:5379340-5379359 | MsG0380011796.01.T01:intron | 60.0% | |
| CCAACCGCAATTCCAGCCTC+TGG | - | Chr3:5378674-5378693 | MsG0380011796.01.T01:CDS | 60.0% | |
| CCAGAGGCTGGAATTGCGGT+TGG | + | Chr3:5378677-5378696 | None:intergenic | 60.0% | |
| GTATACGGAACGCCGTCCGA+TGG | + | Chr3:5379263-5379282 | None:intergenic | 60.0% | |
| ! | AATTTTGCCGCGCCAGAGGC+TGG | + | Chr3:5378689-5378708 | None:intergenic | 60.0% |
| !! | GCGTTGGCTTCACCAGTGGT+AGG | - | Chr3:5379296-5379315 | MsG0380011796.01.T01:intron | 60.0% |
| AACGCCGTCCGATGGAGCAC+CGG | + | Chr3:5379255-5379274 | None:intergenic | 65.0% | |
| CATGGCAGCCGGTGCTCCAT+CGG | - | Chr3:5379244-5379263 | MsG0380011796.01.T01:intron | 65.0% | |
| CGCAATTCCAGCCTCTGGCG+CGG | - | Chr3:5378679-5378698 | MsG0380011796.01.T01:CDS | 65.0% | |
| CGCGCCAGAGGCTGGAATTG+CGG | + | Chr3:5378681-5378700 | None:intergenic | 65.0% | |
| CTGCTGCGCGCTCAAGAGCA+AGG | - | Chr3:5379423-5379442 | MsG0380011796.01.T01:intron | 65.0% | |
| !! | GGTGGCGTTGGCTTCACCAG+TGG | - | Chr3:5379292-5379311 | MsG0380011796.01.T01:intron | 65.0% |
| GCAGCCGGTGCTCCATCGGA+CGG | - | Chr3:5379248-5379267 | MsG0380011796.01.T01:intron | 70.0% | |
| TGCGAGAAAGCGGGGACCGG+AGG | - | Chr3:5379343-5379362 | MsG0380011796.01.T01:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 5378636 | 5380658 | 5378636 | ID=MsG0380011796.01;Name=MsG0380011796.01 |
| Chr3 | mRNA | 5378636 | 5380658 | 5378636 | ID=MsG0380011796.01.T01;Parent=MsG0380011796.01;Name=MsG0380011796.01.T01;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|322 |
| Chr3 | exon | 5379843 | 5380658 | 5379843 | ID=MsG0380011796.01.T01:exon:1263;Parent=MsG0380011796.01.T01 |
| Chr3 | exon | 5379664 | 5379735 | 5379664 | ID=MsG0380011796.01.T01:exon:1262;Parent=MsG0380011796.01.T01 |
| Chr3 | exon | 5378636 | 5378716 | 5378636 | ID=MsG0380011796.01.T01:exon:1261;Parent=MsG0380011796.01.T01 |
| Chr3 | CDS | 5379843 | 5380658 | 5379843 | ID=MsG0380011796.01.T01:cds;Parent=MsG0380011796.01.T01 |
| Chr3 | CDS | 5379664 | 5379735 | 5379664 | ID=MsG0380011796.01.T01:cds;Parent=MsG0380011796.01.T01 |
| Chr3 | CDS | 5378636 | 5378716 | 5378636 | ID=MsG0380011796.01.T01:cds;Parent=MsG0380011796.01.T01 |
| Gene Sequence |
| Protein sequence |
