Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011934.01.T01 | XP_003598354.1 | 96.894 | 322 | 10 | 0 | 1 | 322 | 1 | 322 | 0 | 647 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011934.01.T01 | Q9LES3 | 52.396 | 313 | 120 | 8 | 14 | 322 | 10 | 297 | 1.96E-87 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011934.01.T01 | G7IVG7 | 96.894 | 322 | 10 | 0 | 1 | 322 | 1 | 322 | 0.0 | 647 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380011796.01 | MsG0380011934.01 | 0.890945 | 6.223720e-74 | 5.346157e-70 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0380011796.01 | MsG0380011934.01 | PPI |
| MsG0380011934.01 | MsG0880043905.01 | PPI |
| MsG0880043905.01 | MsG0380011934.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011934.01.T01 | MTR_3g010660 | 96.894 | 322 | 10 | 0 | 1 | 322 | 1 | 322 | 0.0 | 647 |
| MsG0380011934.01.T01 | MTR_8g043960 | 65.260 | 308 | 92 | 4 | 16 | 322 | 20 | 313 | 6.80e-138 | 393 |
| MsG0380011934.01.T01 | MTR_7g088090 | 49.530 | 319 | 127 | 9 | 20 | 320 | 16 | 318 | 1.01e-83 | 256 |
| MsG0380011934.01.T01 | MTR_6g026800 | 50.621 | 322 | 126 | 9 | 19 | 322 | 15 | 321 | 3.76e-80 | 246 |
| MsG0380011934.01.T01 | MTR_4g085910 | 36.176 | 340 | 154 | 13 | 20 | 301 | 18 | 352 | 2.37e-42 | 150 |
| MsG0380011934.01.T01 | MTR_5g088230 | 46.067 | 178 | 76 | 6 | 1 | 170 | 1 | 166 | 1.50e-34 | 127 |
| MsG0380011934.01.T01 | MTR_5g088230 | 57.955 | 88 | 37 | 0 | 235 | 322 | 182 | 269 | 7.00e-23 | 96.3 |
| MsG0380011934.01.T01 | MTR_2g086390 | 33.968 | 315 | 139 | 10 | 23 | 320 | 11 | 273 | 1.38e-33 | 125 |
| MsG0380011934.01.T01 | MTR_2g086390 | 34.256 | 289 | 127 | 9 | 23 | 294 | 11 | 253 | 1.81e-33 | 125 |
| MsG0380011934.01.T01 | MTR_5g088230 | 46.629 | 178 | 70 | 7 | 1 | 170 | 1 | 161 | 2.92e-33 | 124 |
| MsG0380011934.01.T01 | MTR_5g088230 | 57.955 | 88 | 37 | 0 | 235 | 322 | 177 | 264 | 7.90e-23 | 95.9 |
| MsG0380011934.01.T01 | MTR_2g086340 | 36.271 | 295 | 152 | 10 | 12 | 294 | 14 | 284 | 1.21e-27 | 110 |
| MsG0380011934.01.T01 | MTR_3g101780 | 48.361 | 122 | 56 | 2 | 19 | 138 | 26 | 142 | 9.58e-27 | 109 |
| MsG0380011934.01.T01 | MTR_3g101780 | 42.202 | 109 | 60 | 1 | 189 | 297 | 293 | 398 | 1.67e-17 | 83.2 |
| MsG0380011934.01.T01 | MTR_7g104480 | 43.182 | 132 | 56 | 3 | 26 | 138 | 45 | 176 | 2.38e-20 | 91.3 |
| MsG0380011934.01.T01 | MTR_5g060990 | 29.054 | 296 | 167 | 8 | 16 | 273 | 8 | 298 | 1.20e-19 | 87.8 |
| MsG0380011934.01.T01 | MTR_4g094390 | 42.718 | 103 | 53 | 2 | 196 | 296 | 77 | 175 | 1.04e-13 | 69.3 |
| MsG0380011934.01.T01 | MTR_8g075130 | 46.988 | 83 | 40 | 2 | 243 | 322 | 97 | 178 | 6.09e-13 | 66.6 |
| MsG0380011934.01.T01 | MTR_7g015990 | 68.000 | 50 | 13 | 1 | 251 | 297 | 120 | 169 | 3.00e-12 | 65.1 |
| MsG0380011934.01.T01 | MTR_1g098590 | 62.745 | 51 | 19 | 0 | 246 | 296 | 157 | 207 | 3.06e-12 | 65.9 |
| MsG0380011934.01.T01 | MTR_1g098590 | 62.745 | 51 | 19 | 0 | 246 | 296 | 157 | 207 | 3.98e-12 | 65.1 |
| MsG0380011934.01.T01 | MTR_1g098590 | 62.745 | 51 | 19 | 0 | 246 | 296 | 157 | 207 | 4.62e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011934.01.T01 | AT3G56850 | 52.396 | 313 | 120 | 8 | 14 | 322 | 10 | 297 | 1.99e-88 | 267 |
| MsG0380011934.01.T01 | AT2G41070 | 48.418 | 316 | 101 | 10 | 10 | 322 | 6 | 262 | 4.55e-75 | 231 |
| MsG0380011934.01.T01 | AT2G41070 | 48.418 | 316 | 101 | 10 | 10 | 322 | 6 | 262 | 4.55e-75 | 231 |
| MsG0380011934.01.T01 | AT2G41070 | 48.418 | 316 | 101 | 10 | 10 | 322 | 6 | 262 | 4.55e-75 | 231 |
| MsG0380011934.01.T01 | AT2G41070 | 48.418 | 316 | 101 | 10 | 10 | 322 | 15 | 271 | 4.71e-75 | 232 |
| MsG0380011934.01.T01 | AT2G41070 | 47.931 | 290 | 89 | 10 | 10 | 296 | 6 | 236 | 3.45e-64 | 203 |
| MsG0380011934.01.T01 | AT1G49720 | 34.320 | 338 | 162 | 7 | 18 | 296 | 21 | 357 | 3.77e-45 | 159 |
| MsG0380011934.01.T01 | AT1G49720 | 34.320 | 338 | 162 | 7 | 18 | 296 | 21 | 357 | 4.02e-45 | 158 |
| MsG0380011934.01.T01 | AT1G49720 | 34.320 | 338 | 162 | 7 | 18 | 296 | 21 | 357 | 4.02e-45 | 158 |
| MsG0380011934.01.T01 | AT2G36270 | 32.346 | 405 | 169 | 13 | 12 | 315 | 30 | 430 | 4.40e-37 | 138 |
| MsG0380011934.01.T01 | AT2G36270 | 32.346 | 405 | 169 | 13 | 12 | 315 | 30 | 430 | 4.40e-37 | 138 |
| MsG0380011934.01.T01 | AT2G36270 | 32.976 | 373 | 155 | 12 | 12 | 293 | 30 | 398 | 2.53e-35 | 133 |
| MsG0380011934.01.T01 | AT3G44460 | 37.705 | 305 | 131 | 13 | 14 | 294 | 22 | 291 | 1.82e-29 | 115 |
| MsG0380011934.01.T01 | AT3G19290 | 43.046 | 151 | 65 | 3 | 9 | 138 | 21 | 171 | 3.01e-25 | 105 |
| MsG0380011934.01.T01 | AT3G19290 | 43.046 | 151 | 65 | 3 | 9 | 138 | 21 | 171 | 3.25e-25 | 105 |
| MsG0380011934.01.T01 | AT3G19290 | 37.857 | 140 | 64 | 4 | 178 | 296 | 260 | 397 | 6.27e-14 | 72.4 |
| MsG0380011934.01.T01 | AT3G19290 | 43.046 | 151 | 65 | 3 | 9 | 138 | 21 | 171 | 4.19e-25 | 105 |
| MsG0380011934.01.T01 | AT3G19290 | 37.857 | 140 | 64 | 4 | 178 | 296 | 260 | 397 | 7.74e-14 | 72.4 |
| MsG0380011934.01.T01 | AT3G19290 | 43.046 | 151 | 65 | 3 | 9 | 138 | 21 | 171 | 4.19e-25 | 105 |
| MsG0380011934.01.T01 | AT3G19290 | 37.857 | 140 | 64 | 4 | 178 | 296 | 260 | 397 | 7.74e-14 | 72.4 |
| MsG0380011934.01.T01 | AT3G19290 | 43.046 | 151 | 65 | 3 | 9 | 138 | 21 | 171 | 4.31e-25 | 105 |
| MsG0380011934.01.T01 | AT3G19290 | 37.857 | 140 | 64 | 4 | 178 | 296 | 260 | 397 | 7.34e-14 | 72.4 |
| MsG0380011934.01.T01 | AT5G42910 | 28.533 | 368 | 175 | 13 | 20 | 319 | 20 | 367 | 2.10e-23 | 99.4 |
| MsG0380011934.01.T01 | AT4G34000 | 34.715 | 193 | 77 | 6 | 19 | 171 | 26 | 209 | 8.30e-22 | 95.9 |
| MsG0380011934.01.T01 | AT4G34000 | 60.000 | 60 | 24 | 0 | 237 | 296 | 359 | 418 | 1.82e-15 | 77.0 |
| MsG0380011934.01.T01 | AT4G34000 | 34.197 | 193 | 78 | 5 | 19 | 171 | 26 | 209 | 1.08e-21 | 95.5 |
| MsG0380011934.01.T01 | AT4G34000 | 60.000 | 65 | 25 | 1 | 237 | 301 | 359 | 422 | 2.39e-15 | 77.0 |
| MsG0380011934.01.T01 | AT4G34000 | 34.197 | 193 | 78 | 5 | 19 | 171 | 26 | 209 | 1.08e-21 | 95.5 |
| MsG0380011934.01.T01 | AT4G34000 | 60.000 | 65 | 25 | 1 | 237 | 301 | 359 | 422 | 2.39e-15 | 77.0 |
| MsG0380011934.01.T01 | AT4G34000 | 34.197 | 193 | 78 | 5 | 19 | 171 | 26 | 209 | 1.08e-21 | 95.5 |
| MsG0380011934.01.T01 | AT4G34000 | 60.000 | 65 | 25 | 1 | 237 | 301 | 359 | 422 | 2.39e-15 | 77.0 |
| MsG0380011934.01.T01 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 2.26e-21 | 94.0 |
| MsG0380011934.01.T01 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 2.26e-21 | 94.0 |
| MsG0380011934.01.T01 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 3.93e-21 | 93.6 |
| MsG0380011934.01.T01 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 3.93e-21 | 93.6 |
| MsG0380011934.01.T01 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 3.93e-21 | 93.6 |
| MsG0380011934.01.T01 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 3.93e-21 | 93.6 |
| MsG0380011934.01.T01 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 4.09e-21 | 93.6 |
| MsG0380011934.01.T01 | AT1G45249 | 39.860 | 143 | 61 | 5 | 195 | 320 | 280 | 414 | 9.87e-18 | 83.6 |
| MsG0380011934.01.T01 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 36 | 166 | 4.27e-21 | 93.6 |
| MsG0380011934.01.T01 | AT1G45249 | 39.860 | 143 | 61 | 5 | 195 | 320 | 295 | 429 | 1.38e-17 | 83.6 |
| MsG0380011934.01.T01 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 36 | 166 | 4.27e-21 | 93.6 |
| MsG0380011934.01.T01 | AT1G45249 | 39.860 | 143 | 61 | 5 | 195 | 320 | 295 | 429 | 1.38e-17 | 83.6 |
| MsG0380011934.01.T01 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 5.30e-21 | 93.2 |
| MsG0380011934.01.T01 | AT1G45249 | 37.013 | 154 | 61 | 6 | 195 | 320 | 280 | 425 | 6.98e-15 | 75.5 |
| MsG0380011934.01.T01 | AT4G35900 | 51.163 | 86 | 40 | 2 | 237 | 322 | 202 | 285 | 2.08e-16 | 78.6 |
| MsG0380011934.01.T01 | AT2G17770 | 48.837 | 86 | 42 | 2 | 237 | 322 | 112 | 195 | 2.36e-14 | 70.9 |
| MsG0380011934.01.T01 | AT5G44080 | 32.353 | 204 | 91 | 8 | 96 | 297 | 120 | 278 | 2.71e-14 | 72.8 |
| MsG0380011934.01.T01 | AT1G03970 | 31.373 | 204 | 84 | 6 | 96 | 297 | 85 | 234 | 3.37e-14 | 72.0 |
Find 73 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGCGACGAAGCTGGCATTT+AGG | 0.252772 | 3:-8152508 | None:intergenic |
| AGAAGACGGTTGATGAAGTT+TGG | 0.321664 | 3:+8150808 | MsG0380011934.01.T01:CDS |
| GATTCAACAACACTGACTTT+AGG | 0.341594 | 3:-8150981 | None:intergenic |
| TTTGGGTGAGATGACATTAG+AGG | 0.364587 | 3:+8150890 | MsG0380011934.01.T01:CDS |
| TCAACCGTCTTCTTGCTTAA+CGG | 0.378968 | 3:-8150798 | None:intergenic |
| ACGAAGCTGGCATTTAGGTT+CGG | 0.387515 | 3:-8152503 | None:intergenic |
| TCAAGAGATGCAGTCTACTT+TGG | 0.394291 | 3:+8150872 | MsG0380011934.01.T01:CDS |
| GCCACCTGACCATCTGTATA+CGG | 0.395127 | 3:-8151164 | None:intergenic |
| CGAAGCTGGCATTTAGGTTC+GGG | 0.399153 | 3:-8152502 | None:intergenic |
| GGTTAAAGCAGGCGTTGTTT+CGG | 0.403853 | 3:+8150920 | MsG0380011934.01.T01:CDS |
| CAACCTAATCTGTCGTTAAC+CGG | 0.406252 | 3:+8150774 | MsG0380011934.01.T01:CDS |
| CAAGAGATGCAGTCTACTTT+GGG | 0.419918 | 3:+8150873 | MsG0380011934.01.T01:CDS |
| CAGAATCACTTAGGTGACTT+AGG | 0.427650 | 3:+8150627 | MsG0380011934.01.T01:CDS |
| AGAAGAGGATGATTAAGAAT+CGG | 0.435534 | 3:+8151285 | MsG0380011934.01.T01:CDS |
| TCAAGGTTCATACTACTTAG+TGG | 0.444599 | 3:-8150654 | None:intergenic |
| CCAGAGGCTGGAATTGCGGT+TGG | 0.448828 | 3:-8150563 | None:intergenic |
| GAAGAGGATGATTAAGAATC+GGG | 0.454965 | 3:+8151286 | MsG0380011934.01.T01:CDS |
| CAGTCATTGCACATGGCAGC+CGG | 0.472274 | 3:+8151122 | MsG0380011934.01.T01:CDS |
| CAAAGTCTCGCGTCTGGAAG+AGG | 0.475416 | 3:+8151471 | MsG0380011934.01.T01:CDS |
| CGCGCCAGAGGCTGGAATTG+CGG | 0.479085 | 3:-8150567 | None:intergenic |
| GGACCGGTTAACGACAGATT+AGG | 0.482657 | 3:-8150777 | None:intergenic |
| GCGCTCAAGAGCAAGGAAAC+AGG | 0.483729 | 3:+8151319 | MsG0380011934.01.T01:CDS |
| GGAGATCAAAGTCTCGCGTC+TGG | 0.487266 | 3:+8151465 | MsG0380011934.01.T01:CDS |
| CATGGCAGCCGGTGCTCCAT+CGG | 0.496616 | 3:+8151133 | MsG0380011934.01.T01:CDS |
| CCAACCGCAATTCCAGCCTC+TGG | 0.504611 | 3:+8150563 | MsG0380011934.01.T01:CDS |
| GATGAAGTTCAGAATCACTT+AGG | 0.504785 | 3:+8150618 | MsG0380011934.01.T01:CDS |
| TCTGAACTTCATCAAGGGTA+AGG | 0.505070 | 3:-8150608 | None:intergenic |
| GTCCTCTCAATCATGTCCTC+CGG | 0.505376 | 3:-8151248 | None:intergenic |
| ATCTGCGAGAAAGCGGGGAC+CGG | 0.507079 | 3:+8151229 | MsG0380011934.01.T01:CDS |
| CGTCTTCTTGCTTAACGGAC+CGG | 0.507684 | 3:-8150793 | None:intergenic |
| TGGCATTTAGGTTCGGGTGG+TGG | 0.513608 | 3:-8152496 | None:intergenic |
| TCAGATAAGTTTCCTACCAC+TGG | 0.525861 | 3:-8151197 | None:intergenic |
| GACTGAGCTATGATCTGGCT+CGG | 0.527606 | 3:-8151104 | None:intergenic |
| CTGTTGAGAGGAAGCAGAAG+AGG | 0.527853 | 3:+8151270 | MsG0380011934.01.T01:CDS |
| TACAGATGGTCAGGTGGCGT+TGG | 0.529554 | 3:+8151169 | MsG0380011934.01.T01:CDS |
| ACAGAAATCTGCGAGAAAGC+GGG | 0.534375 | 3:+8151223 | MsG0380011934.01.T01:CDS |
| AACGAGGACACAGCGCAAGC+CGG | 0.540740 | 3:+8150732 | MsG0380011934.01.T01:CDS |
| AGTGATTCTGAACTTCATCA+AGG | 0.543380 | 3:-8150614 | None:intergenic |
| AACGCCGTCCGATGGAGCAC+CGG | 0.546844 | 3:-8151141 | None:intergenic |
| CTGCTGCGCGCTCAAGAGCA+AGG | 0.547968 | 3:+8151312 | MsG0380011934.01.T01:CDS |
| CGCAATTCCAGCCTCTGGCG+CGG | 0.552340 | 3:+8150568 | MsG0380011934.01.T01:CDS |
| CGTTCCGTATACAGATGGTC+AGG | 0.553919 | 3:+8151160 | MsG0380011934.01.T01:CDS |
| TGCTGTGGATGCTGATAGTG+TGG | 0.563676 | 3:-8151059 | None:intergenic |
| TTAGGCATACACAACTGAGT+TGG | 0.564109 | 3:+8151444 | MsG0380011934.01.T01:intron |
| TGCGAGAAAGCGGGGACCGG+AGG | 0.566566 | 3:+8151232 | MsG0380011934.01.T01:CDS |
| GGCAAACCAATCAATTCGCA+TGG | 0.566719 | 3:+8150707 | MsG0380011934.01.T01:CDS |
| CACAGAAATCTGCGAGAAAG+CGG | 0.574514 | 3:+8151222 | MsG0380011934.01.T01:CDS |
| GTATACGGAACGCCGTCCGA+TGG | 0.577145 | 3:-8151149 | None:intergenic |
| CTGATGATACGCGACGAAGC+TGG | 0.577434 | 3:-8152516 | None:intergenic |
| TGAAAAGCTGAGGAAAGAGA+AGG | 0.578797 | 3:+8151498 | MsG0380011934.01.T01:CDS |
| GCAGCCGGTGCTCCATCGGA+CGG | 0.579352 | 3:+8151137 | MsG0380011934.01.T01:CDS |
| GCATCCACAGCAAAGTGTGA+TGG | 0.583686 | 3:+8151070 | MsG0380011934.01.T01:CDS |
| AGCTGGCATTTAGGTTCGGG+TGG | 0.592805 | 3:-8152499 | None:intergenic |
| GCAATGACTGAGCTATGATC+TGG | 0.599628 | 3:-8151109 | None:intergenic |
| TACTGTATCCACGGACCATG+TGG | 0.602459 | 3:-8151029 | None:intergenic |
| ACAACACTGACTTTAGGAGT+AGG | 0.608724 | 3:-8150975 | None:intergenic |
| ATCAATTCGCATGGAAAACG+AGG | 0.609101 | 3:+8150716 | MsG0380011934.01.T01:CDS |
| GTGATTCTGAACTTCATCAA+GGG | 0.610620 | 3:-8150613 | None:intergenic |
| CATAGCTCAGTCATTGCACA+TGG | 0.615121 | 3:+8151115 | MsG0380011934.01.T01:CDS |
| GACCGGAGGACATGATTGAG+AGG | 0.620098 | 3:+8151246 | MsG0380011934.01.T01:CDS |
| GCGTTGGCTTCACCAGTGGT+AGG | 0.620523 | 3:+8151185 | MsG0380011934.01.T01:CDS |
| GTCGCCATCACACTTTGCTG+TGG | 0.628005 | 3:-8151074 | None:intergenic |
| AAGAGGAAAATGAAAAGCTG+AGG | 0.635284 | 3:+8151488 | MsG0380011934.01.T01:CDS |
| GGTTGTGCATACTGTATCCA+CGG | 0.641304 | 3:-8151038 | None:intergenic |
| TGATTGAGAGGACTGTTGAG+AGG | 0.642725 | 3:+8151258 | MsG0380011934.01.T01:CDS |
| GGTGGCGTTGGCTTCACCAG+TGG | 0.643645 | 3:+8151181 | MsG0380011934.01.T01:CDS |
| CAGAAATCTGCGAGAAAGCG+GGG | 0.644702 | 3:+8151224 | MsG0380011934.01.T01:CDS |
| CCAACAAAACAACGATCATG+AGG | 0.650306 | 3:+8150839 | MsG0380011934.01.T01:CDS |
| GACGGCGTTCCGTATACAGA+TGG | 0.652010 | 3:+8151155 | MsG0380011934.01.T01:CDS |
| TCCGTATACAGATGGTCAGG+TGG | 0.656234 | 3:+8151163 | MsG0380011934.01.T01:CDS |
| CGGTCCGTTAAGCAAGAAGA+CGG | 0.656636 | 3:+8150794 | MsG0380011934.01.T01:CDS |
| ACAAAACAACGATCATGAGG+AGG | 0.694318 | 3:+8150842 | MsG0380011934.01.T01:CDS |
| GGACCATGTGGAGAAAACTG+TGG | 0.769588 | 3:-8151017 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCAATATCTAAACATT+TGG | + | Chr3:8152182-8152201 | MsG0380011934.01.T01:intron | 15.0% |
| !! | ATTTACATTCTTAATTCTTA+TGG | + | Chr3:8151652-8151671 | MsG0380011934.01.T01:intron | 15.0% |
| !!! | ATTAACAAAAAGATTTTCAA+TGG | - | Chr3:8151555-8151574 | None:intergenic | 15.0% |
| !!! | TTATTTTCTCAAATTATTAC+CGG | + | Chr3:8152078-8152097 | MsG0380011934.01.T01:intron | 15.0% |
| !! | AAATTAGAACTTCAATAACA+TGG | - | Chr3:8151372-8151391 | None:intergenic | 20.0% |
| !! | TACTTAATATCAAGAAACTA+AGG | - | Chr3:8151593-8151612 | None:intergenic | 20.0% |
| !! | TATTCTGATATTTCATGTAT+TGG | + | Chr3:8151881-8151900 | MsG0380011934.01.T01:intron | 20.0% |
| !! | TGAAATATCAGAATAATTCT+AGG | - | Chr3:8151876-8151895 | None:intergenic | 20.0% |
| !! | TTGATTGTACTATATAAACA+AGG | - | Chr3:8152225-8152244 | None:intergenic | 20.0% |
| !! | TTTGCTTAAAAGTTATAGTT+TGG | + | Chr3:8151527-8151546 | MsG0380011934.01.T01:intron | 20.0% |
| !!! | ACAAATTCAAATTTTTGGAA+TGG | + | Chr3:8152371-8152390 | MsG0380011934.01.T01:intron | 20.0% |
| !!! | ATGCTACAAATTCAAATTTT+TGG | + | Chr3:8152366-8152385 | MsG0380011934.01.T01:intron | 20.0% |
| !!! | GAAATTTGAAATCAGTAAAT+TGG | - | Chr3:8152168-8152187 | None:intergenic | 20.0% |
| !!! | TACTTATTGACTGTTATTAT+TGG | + | Chr3:8151941-8151960 | MsG0380011934.01.T01:intron | 20.0% |
| ! | AATACATATGAAGGATTGAA+AGG | - | Chr3:8151979-8151998 | None:intergenic | 25.0% |
| ! | AATGAGTAAAAAGATCATGA+AGG | + | Chr3:8151915-8151934 | MsG0380011934.01.T01:intron | 25.0% |
| ! | ATGGAAAAAGTTGTTTACTT+GGG | - | Chr3:8151409-8151428 | None:intergenic | 25.0% |
| ! | CTAATTACAGTTATAATCCA+TGG | - | Chr3:8151428-8151447 | None:intergenic | 25.0% |
| ! | GCAACAAGATTAATAAACAA+AGG | - | Chr3:8152297-8152316 | None:intergenic | 25.0% |
| ! | TCTTAATTCTTATGGTGTTT+GGG | + | Chr3:8151660-8151679 | MsG0380011934.01.T01:intron | 25.0% |
| ! | TTCTTAATTCTTATGGTGTT+TGG | + | Chr3:8151659-8151678 | MsG0380011934.01.T01:intron | 25.0% |
| !! | ATCTCAATTTAGTTTCTGTA+CGG | + | Chr3:8151615-8151634 | MsG0380011934.01.T01:intron | 25.0% |
| !! | CATGGATTATAACTGTAATT+AGG | + | Chr3:8151426-8151445 | MsG0380011934.01.T01:intron | 25.0% |
| !! | TTACTGCTTAGAATTTTCTT+TGG | + | Chr3:8151719-8151738 | MsG0380011934.01.T01:intron | 25.0% |
| AGAAGAGGATGATTAAGAAT+CGG | + | Chr3:8151285-8151304 | MsG0380011934.01.T01:CDS | 30.0% | |
| AGTGTCAGAAATACATATGA+AGG | - | Chr3:8151988-8152007 | None:intergenic | 30.0% | |
| CATGGAAAAAGTTGTTTACT+TGG | - | Chr3:8151410-8151429 | None:intergenic | 30.0% | |
| TGATATTGACACATAAACAC+CGG | - | Chr3:8152100-8152119 | None:intergenic | 30.0% | |
| TTGGAATGGATGTATCTTTA+TGG | + | Chr3:8152385-8152404 | MsG0380011934.01.T01:intron | 30.0% | |
| TTTCTGACACTTCAAATTCA+AGG | + | Chr3:8151997-8152016 | MsG0380011934.01.T01:intron | 30.0% | |
| ! | CTGATATTTCATGTATTGGT+TGG | + | Chr3:8151885-8151904 | MsG0380011934.01.T01:intron | 30.0% |
| ! | TTTTGCATTAAGCATTTGGA+TGG | + | Chr3:8152338-8152357 | MsG0380011934.01.T01:intron | 30.0% |
| !! | CAAGTAAACAACTTTTTCCA+TGG | + | Chr3:8151408-8151427 | MsG0380011934.01.T01:intron | 30.0% |
| !!! | GATGACATTAGAGGATTTTT+TGG | + | Chr3:8150899-8150918 | MsG0380011934.01.T01:CDS | 30.0% |
| !!! | TTGCATAGTGTTTTTTGAAG+AGG | + | Chr3:8152313-8152332 | MsG0380011934.01.T01:intron | 30.0% |
| AAGAGGAAAATGAAAAGCTG+AGG | + | Chr3:8151488-8151507 | MsG0380011934.01.T01:CDS | 35.0% | |
| AAGTAAGCACAAGACAGTAA+AGG | - | Chr3:8151761-8151780 | None:intergenic | 35.0% | |
| ACGTTGAAAAACAACTTGTC+CGG | - | Chr3:8150754-8150773 | None:intergenic | 35.0% | |
| AGTAAGCACAAGACAGTAAA+GGG | - | Chr3:8151760-8151779 | None:intergenic | 35.0% | |
| AGTGATTCTGAACTTCATCA+AGG | - | Chr3:8150617-8150636 | None:intergenic | 35.0% | |
| AGTTGTTTACTTGGGAGAAA+CGG | - | Chr3:8151401-8151420 | None:intergenic | 35.0% | |
| GAAATTGTGCACTTTGATGT+TGG | + | Chr3:8151682-8151701 | MsG0380011934.01.T01:intron | 35.0% | |
| GAAGAGGATGATTAAGAATC+GGG | + | Chr3:8151286-8151305 | MsG0380011934.01.T01:CDS | 35.0% | |
| GATGAAGTTCAGAATCACTT+AGG | + | Chr3:8150618-8150637 | MsG0380011934.01.T01:CDS | 35.0% | |
| GTAAAGGGTCACATATTCTA+TGG | - | Chr3:8151745-8151764 | None:intergenic | 35.0% | |
| GTGATTCTGAACTTCATCAA+GGG | - | Chr3:8150616-8150635 | None:intergenic | 35.0% | |
| TCAAGGTTCATACTACTTAG+TGG | - | Chr3:8150657-8150676 | None:intergenic | 35.0% | |
| TGTCAATATCATGTCAGTGT+CGG | - | Chr3:8152035-8152054 | None:intergenic | 35.0% | |
| ! | ACGAGCTTCTGAAAAATGTA+TGG | + | Chr3:8150676-8150695 | MsG0380011934.01.T01:CDS | 35.0% |
| ! | GAAAAATGTATGGACTGTTG+AGG | + | Chr3:8150686-8150705 | MsG0380011934.01.T01:CDS | 35.0% |
| ! | GGCATTTTGCATTAAGCATT+TGG | + | Chr3:8152334-8152353 | MsG0380011934.01.T01:intron | 35.0% |
| ! | GTTTTACATACTCAACTTGC+AGG | + | Chr3:8152447-8152466 | MsG0380011934.01.T01:intron | 35.0% |
| !! | ACTGTCTTGTGCTTACTTTT+AGG | + | Chr3:8151763-8151782 | MsG0380011934.01.T01:intron | 35.0% |
| !! | GATTCAACAACACTGACTTT+AGG | - | Chr3:8150984-8151003 | None:intergenic | 35.0% |
| !!! | GAGGATTTTTTGGTTAAAGC+AGG | + | Chr3:8150909-8150928 | MsG0380011934.01.T01:CDS | 35.0% |
| ACAAAACAACGATCATGAGG+AGG | + | Chr3:8150842-8150861 | MsG0380011934.01.T01:CDS | 40.0% | |
| ATCAATTCGCATGGAAAACG+AGG | + | Chr3:8150716-8150735 | MsG0380011934.01.T01:CDS | 40.0% | |
| CAACCTAATCTGTCGTTAAC+CGG | + | Chr3:8150774-8150793 | MsG0380011934.01.T01:CDS | 40.0% | |
| CAAGAGATGCAGTCTACTTT+GGG | + | Chr3:8150873-8150892 | MsG0380011934.01.T01:CDS | 40.0% | |
| CAGAATCACTTAGGTGACTT+AGG | + | Chr3:8150627-8150646 | MsG0380011934.01.T01:CDS | 40.0% | |
| CCAACAAAACAACGATCATG+AGG | + | Chr3:8150839-8150858 | MsG0380011934.01.T01:CDS | 40.0% | |
| CTTCAAATTCAAGGCGTGTT+TGG | + | Chr3:8152006-8152025 | MsG0380011934.01.T01:intron | 40.0% | |
| GTTGTTTACTTGGGAGAAAC+GGG | - | Chr3:8151400-8151419 | None:intergenic | 40.0% | |
| TCAACCGTCTTCTTGCTTAA+CGG | - | Chr3:8150801-8150820 | None:intergenic | 40.0% | |
| TCAAGAGATGCAGTCTACTT+TGG | + | Chr3:8150872-8150891 | MsG0380011934.01.T01:CDS | 40.0% | |
| TCAGATAAGTTTCCTACCAC+TGG | - | Chr3:8151200-8151219 | None:intergenic | 40.0% | |
| TCTGAACTTCATCAAGGGTA+AGG | - | Chr3:8150611-8150630 | None:intergenic | 40.0% | |
| TGAAAAGCTGAGGAAAGAGA+AGG | + | Chr3:8151498-8151517 | MsG0380011934.01.T01:CDS | 40.0% | |
| TGTCTCTGTCAACACTTCAT+AGG | + | Chr3:8152126-8152145 | MsG0380011934.01.T01:intron | 40.0% | |
| TTAGGCATACACAACTGAGT+TGG | + | Chr3:8151444-8151463 | MsG0380011934.01.T01:intron | 40.0% | |
| TTTGGGTGAGATGACATTAG+AGG | + | Chr3:8150890-8150909 | MsG0380011934.01.T01:CDS | 40.0% | |
| ! | CGTTTTCCATGCGAATTGAT+TGG | - | Chr3:8150716-8150735 | None:intergenic | 40.0% |
| !! | ACAACACTGACTTTAGGAGT+AGG | - | Chr3:8150978-8150997 | None:intergenic | 40.0% |
| !! | AGAAGACGGTTGATGAAGTT+TGG | + | Chr3:8150808-8150827 | MsG0380011934.01.T01:CDS | 40.0% |
| !! | CATTTTTCAGAAGCTCGTCA+AGG | - | Chr3:8150674-8150693 | None:intergenic | 40.0% |
| !! | CCTCATGATCGTTGTTTTGT+TGG | - | Chr3:8150842-8150861 | None:intergenic | 40.0% |
| ACAGAAATCTGCGAGAAAGC+GGG | + | Chr3:8151223-8151242 | MsG0380011934.01.T01:CDS | 45.0% | |
| CACAGAAATCTGCGAGAAAG+CGG | + | Chr3:8151222-8151241 | MsG0380011934.01.T01:CDS | 45.0% | |
| CATAGCTCAGTCATTGCACA+TGG | + | Chr3:8151115-8151134 | MsG0380011934.01.T01:CDS | 45.0% | |
| GCAATGACTGAGCTATGATC+TGG | - | Chr3:8151112-8151131 | None:intergenic | 45.0% | |
| GGCAAACCAATCAATTCGCA+TGG | + | Chr3:8150707-8150726 | MsG0380011934.01.T01:CDS | 45.0% | |
| GGTTGTGCATACTGTATCCA+CGG | - | Chr3:8151041-8151060 | None:intergenic | 45.0% | |
| TGATTGAGAGGACTGTTGAG+AGG | + | Chr3:8151258-8151277 | MsG0380011934.01.T01:CDS | 45.0% | |
| ! | ACGAAGCTGGCATTTAGGTT+CGG | - | Chr3:8152506-8152525 | None:intergenic | 45.0% |
| ! | GGTTAAAGCAGGCGTTGTTT+CGG | + | Chr3:8150920-8150939 | MsG0380011934.01.T01:CDS | 45.0% |
| ! | TTGCCACAGTTTTCTCCACA+TGG | + | Chr3:8151014-8151033 | MsG0380011934.01.T01:CDS | 45.0% |
| !! | TGAAGTGTTGACAGAGACAC+AGG | - | Chr3:8152125-8152144 | None:intergenic | 45.0% |
| CAGAAATCTGCGAGAAAGCG+GGG | + | Chr3:8151224-8151243 | MsG0380011934.01.T01:CDS | 50.0% | |
| CGGTCCGTTAAGCAAGAAGA+CGG | + | Chr3:8150794-8150813 | MsG0380011934.01.T01:CDS | 50.0% | |
| CGTTCCGTATACAGATGGTC+AGG | + | Chr3:8151160-8151179 | MsG0380011934.01.T01:CDS | 50.0% | |
| CTGTTGAGAGGAAGCAGAAG+AGG | + | Chr3:8151270-8151289 | MsG0380011934.01.T01:CDS | 50.0% | |
| GACTGAGCTATGATCTGGCT+CGG | - | Chr3:8151107-8151126 | None:intergenic | 50.0% | |
| GCATCCACAGCAAAGTGTGA+TGG | + | Chr3:8151070-8151089 | MsG0380011934.01.T01:CDS | 50.0% | |
| GCCACCTGACCATCTGTATA+CGG | - | Chr3:8151167-8151186 | None:intergenic | 50.0% | |
| GGACCATGTGGAGAAAACTG+TGG | - | Chr3:8151020-8151039 | None:intergenic | 50.0% | |
| GGACCGGTTAACGACAGATT+AGG | - | Chr3:8150780-8150799 | None:intergenic | 50.0% | |
| GTCCTCTCAATCATGTCCTC+CGG | - | Chr3:8151251-8151270 | None:intergenic | 50.0% | |
| TACTGTATCCACGGACCATG+TGG | - | Chr3:8151032-8151051 | None:intergenic | 50.0% | |
| TCCGTATACAGATGGTCAGG+TGG | + | Chr3:8151163-8151182 | MsG0380011934.01.T01:CDS | 50.0% | |
| ! | AGTTTTCTCCACATGGTCCG+TGG | + | Chr3:8151021-8151040 | MsG0380011934.01.T01:CDS | 50.0% |
| ! | ATTGAATTTTGCCGCGCCAG+AGG | - | Chr3:8150582-8150601 | None:intergenic | 50.0% |
| ! | CGAAGCTGGCATTTAGGTTC+GGG | - | Chr3:8152505-8152524 | None:intergenic | 50.0% |
| ! | CGTCTTCTTGCTTAACGGAC+CGG | - | Chr3:8150796-8150815 | None:intergenic | 50.0% |
| ! | TGCTGTGGATGCTGATAGTG+TGG | - | Chr3:8151062-8151081 | None:intergenic | 50.0% |
| ACGCGACGAAGCTGGCATTT+AGG | - | Chr3:8152511-8152530 | None:intergenic | 55.0% | |
| CAAAGTCTCGCGTCTGGAAG+AGG | + | Chr3:8151471-8151490 | MsG0380011934.01.T01:CDS | 55.0% | |
| CAGTCATTGCACATGGCAGC+CGG | + | Chr3:8151122-8151141 | MsG0380011934.01.T01:CDS | 55.0% | |
| CTGATGATACGCGACGAAGC+TGG | - | Chr3:8152519-8152538 | None:intergenic | 55.0% | |
| GACCGGAGGACATGATTGAG+AGG | + | Chr3:8151246-8151265 | MsG0380011934.01.T01:CDS | 55.0% | |
| GACGGCGTTCCGTATACAGA+TGG | + | Chr3:8151155-8151174 | MsG0380011934.01.T01:CDS | 55.0% | |
| GCGCTCAAGAGCAAGGAAAC+AGG | + | Chr3:8151319-8151338 | MsG0380011934.01.T01:CDS | 55.0% | |
| GGAGATCAAAGTCTCGCGTC+TGG | + | Chr3:8151465-8151484 | MsG0380011934.01.T01:CDS | 55.0% | |
| GTCGCCATCACACTTTGCTG+TGG | - | Chr3:8151077-8151096 | None:intergenic | 55.0% | |
| TACAGATGGTCAGGTGGCGT+TGG | + | Chr3:8151169-8151188 | MsG0380011934.01.T01:CDS | 55.0% | |
| ! | AGCTGGCATTTAGGTTCGGG+TGG | - | Chr3:8152502-8152521 | None:intergenic | 55.0% |
| ! | TGGCATTTAGGTTCGGGTGG+TGG | - | Chr3:8152499-8152518 | None:intergenic | 55.0% |
| AACGAGGACACAGCGCAAGC+CGG | + | Chr3:8150732-8150751 | MsG0380011934.01.T01:CDS | 60.0% | |
| ATCTGCGAGAAAGCGGGGAC+CGG | + | Chr3:8151229-8151248 | MsG0380011934.01.T01:CDS | 60.0% | |
| CCAACCGCAATTCCAGCCTC+TGG | + | Chr3:8150563-8150582 | MsG0380011934.01.T01:CDS | 60.0% | |
| CCAGAGGCTGGAATTGCGGT+TGG | - | Chr3:8150566-8150585 | None:intergenic | 60.0% | |
| GTATACGGAACGCCGTCCGA+TGG | - | Chr3:8151152-8151171 | None:intergenic | 60.0% | |
| ! | AATTTTGCCGCGCCAGAGGC+TGG | - | Chr3:8150578-8150597 | None:intergenic | 60.0% |
| !! | GCGTTGGCTTCACCAGTGGT+AGG | + | Chr3:8151185-8151204 | MsG0380011934.01.T01:CDS | 60.0% |
| AACGCCGTCCGATGGAGCAC+CGG | - | Chr3:8151144-8151163 | None:intergenic | 65.0% | |
| CATGGCAGCCGGTGCTCCAT+CGG | + | Chr3:8151133-8151152 | MsG0380011934.01.T01:CDS | 65.0% | |
| CGCAATTCCAGCCTCTGGCG+CGG | + | Chr3:8150568-8150587 | MsG0380011934.01.T01:CDS | 65.0% | |
| CGCGCCAGAGGCTGGAATTG+CGG | - | Chr3:8150570-8150589 | None:intergenic | 65.0% | |
| CTGCTGCGCGCTCAAGAGCA+AGG | + | Chr3:8151312-8151331 | MsG0380011934.01.T01:CDS | 65.0% | |
| !! | GGTGGCGTTGGCTTCACCAG+TGG | + | Chr3:8151181-8151200 | MsG0380011934.01.T01:CDS | 65.0% |
| GCAGCCGGTGCTCCATCGGA+CGG | + | Chr3:8151137-8151156 | MsG0380011934.01.T01:CDS | 70.0% | |
| TGCGAGAAAGCGGGGACCGG+AGG | + | Chr3:8151232-8151251 | MsG0380011934.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 8150525 | 8152549 | 8150525 | ID=MsG0380011934.01;Name=MsG0380011934.01 |
| Chr3 | mRNA | 8150525 | 8152549 | 8150525 | ID=MsG0380011934.01.T01;Parent=MsG0380011934.01;Name=MsG0380011934.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|3|0|322 |
| Chr3 | exon | 8150525 | 8151340 | 8150525 | ID=MsG0380011934.01.T01:exon:3266;Parent=MsG0380011934.01.T01 |
| Chr3 | exon | 8151448 | 8151519 | 8151448 | ID=MsG0380011934.01.T01:exon:3265;Parent=MsG0380011934.01.T01 |
| Chr3 | exon | 8152469 | 8152549 | 8152469 | ID=MsG0380011934.01.T01:exon:3264;Parent=MsG0380011934.01.T01 |
| Chr3 | CDS | 8150525 | 8151340 | 8150525 | ID=MsG0380011934.01.T01:cds;Parent=MsG0380011934.01.T01 |
| Chr3 | CDS | 8151448 | 8151519 | 8151448 | ID=MsG0380011934.01.T01:cds;Parent=MsG0380011934.01.T01 |
| Chr3 | CDS | 8152469 | 8152549 | 8152469 | ID=MsG0380011934.01.T01:cds;Parent=MsG0380011934.01.T01 |
| Gene Sequence |
| Protein sequence |
