AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380011898.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011898.01.T01 MTR_3g009890 88.263 213 12 1 9 208 62 274 1.20e-134 380
MsG0380011898.01.T01 MTR_1g116180 50.000 164 65 4 10 158 58 219 1.06e-40 142
MsG0380011898.01.T01 MTR_1g116180 50.000 164 65 4 10 158 58 219 1.13e-39 141
MsG0380011898.01.T01 MTR_7g005970 48.795 166 74 3 10 164 59 224 4.89e-39 140
MsG0380011898.01.T01 MTR_3g114920 50.993 151 66 3 10 155 54 201 9.22e-39 137
MsG0380011898.01.T01 MTR_2g084410 90.244 41 4 0 115 155 215 255 2.60e-16 76.3
MsG0380011898.01.T01 MTR_2g084375 90.244 41 4 0 115 155 201 241 3.02e-16 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011898.01.T01 AT3G13350 51.007 149 57 3 9 155 62 196 2.47e-39 138
MsG0380011898.01.T01 AT1G55650 35.246 244 89 6 9 199 56 283 2.85e-38 136
MsG0380011898.01.T01 AT1G04880 45.122 164 78 4 10 161 52 215 9.08e-36 131
MsG0380011898.01.T01 AT1G76110 46.753 154 75 3 10 159 61 211 2.52e-32 120

Find 70 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGCAATTAGTAGGAAAAT+TGG 0.205100 3:+7642901 MsG0380011898.01.T01:CDS
TAATTTAATGCAGGTTTATC+AGG 0.284330 3:+7644186 MsG0380011898.01.T01:intron
TATCAATGATTCACCTGTTC+AGG 0.286987 3:+7641541 MsG0380011898.01.T01:CDS
TTGACATGTGGTGTAAATTA+TGG 0.291819 3:+7644390 MsG0380011898.01.T01:three_prime_UTR
CTCCTCAGTGGACTCTTATA+TGG 0.303277 3:+7644275 MsG0380011898.01.T01:CDS
CAAGTCTATACCTGTCTTGC+TGG 0.309127 3:-7642949 None:intergenic
AGGTAATTGTAGATCGTAAA+TGG 0.317695 3:+7641243 MsG0380011898.01.T01:intron
TGTGTAGGATTCCTACTATA+GGG 0.338046 3:+7640936 MsG0380011898.01.T01:CDS
TGAGAGGTAAAGAAAGATAC+AGG 0.353025 3:+7644218 MsG0380011898.01.T01:CDS
AGTGTCTGTGCTGGACTAAT+TGG 0.354657 3:-7642601 None:intergenic
GAGCAATTAGTAGGAAAATT+GGG 0.369568 3:+7642902 MsG0380011898.01.T01:CDS
CATAACAAGCGCATCATTCA+TGG 0.386953 3:+7641301 MsG0380011898.01.T01:CDS
CGTATTGGTTGTGAAGCTAT+TGG 0.406695 3:-7641507 None:intergenic
TTCATTGACTTACCCTGAAC+AGG 0.413930 3:-7641554 None:intergenic
TGCAGGTTTATCAGGAGAAA+AGG 0.428315 3:+7644194 MsG0380011898.01.T01:intron
TTGTGTAGGATTCCTACTAT+AGG 0.432421 3:+7640935 MsG0380011898.01.T01:CDS
GTGATAAAGCAACGATAGAT+AGG 0.439414 3:-7641333 None:intergenic
CATGAATGATGCGCTTGTTA+TGG 0.445119 3:-7641300 None:intergenic
ATCAAAGAACAAAAGGTTTG+AGG 0.461275 3:-7644301 None:intergenic
ACAATTGACATGAAATTTGA+TGG 0.468681 3:+7642643 MsG0380011898.01.T01:CDS
ATATATAGTTACGGTGGACC+TGG 0.474943 3:+7642669 MsG0380011898.01.T01:CDS
GATAGCAGCACCGTCCGTAT+TGG 0.475279 3:-7641522 None:intergenic
ATCTCGTGGTGGTATTGAAA+AGG 0.485522 3:+7641000 MsG0380011898.01.T01:CDS
AAATAAAATCAAAGAACAAA+AGG 0.486150 3:-7644308 None:intergenic
AAGCTATGGATTATAATTCA+AGG 0.488473 3:+7644504 MsG0380011898.01.T01:three_prime_UTR
CTTCACTAACCAGGTGTTGA+GGG 0.490947 3:-7641392 None:intergenic
TCTGACAGACCCAGCAAGAC+AGG 0.501134 3:+7642939 MsG0380011898.01.T01:CDS
AAGTCTATACCTGTCTTGCT+GGG 0.513096 3:-7642948 None:intergenic
CTCTATCCAGATGCTTTGAG+TGG 0.513745 3:+7641476 MsG0380011898.01.T01:intron
ATCAATGATTCACCTGTTCA+GGG 0.519797 3:+7641542 MsG0380011898.01.T01:CDS
TTTGCCCTTTGTGTTTGTGT+AGG 0.523462 3:+7640921 MsG0380011898.01.T01:CDS
TCTTAGCACATGATAAGCTA+TGG 0.531279 3:+7644490 MsG0380011898.01.T01:three_prime_UTR
TTCCTACTAATTGCTCCTTG+TGG 0.533197 3:-7642895 None:intergenic
GGAAAATTGGGTTTGCGTGG+AGG 0.541228 3:+7642914 MsG0380011898.01.T01:CDS
CAATAGCTTCACAACCAATA+CGG 0.543956 3:+7641508 MsG0380011898.01.T01:CDS
TGATGGCGGATATATAGTTA+CGG 0.545231 3:+7642660 MsG0380011898.01.T01:CDS
CAAGTCCCTCCCTCAACACC+TGG 0.550783 3:+7641383 MsG0380011898.01.T01:CDS
ATTAGTCCAGCACAGACACT+TGG 0.556813 3:+7642604 MsG0380011898.01.T01:CDS
GGCCACAAGGAGCAATTAGT+AGG 0.560286 3:+7642893 MsG0380011898.01.T01:intron
GAAGAACCAAGTGTCTGTGC+TGG 0.560864 3:-7642610 None:intergenic
ATGCGCTTGTTATGGTATCT+CGG 0.562285 3:-7641292 None:intergenic
CTTCAACGAAGAGGTGATGC+AGG 0.562980 3:-7640973 None:intergenic
CCACTGAGGAGCTGAACCGT+TGG 0.566627 3:-7644263 None:intergenic
TATCAGGAGAAAAGGTTGAG+AGG 0.569076 3:+7644202 MsG0380011898.01.T01:CDS
GAATCCTACACAAACACAAA+GGG 0.571502 3:-7640925 None:intergenic
GTGTAGGATTCCTACTATAG+GGG 0.574437 3:+7640937 MsG0380011898.01.T01:CDS
TTCGTTGAAGTAACATCTCG+TGG 0.581244 3:+7640986 MsG0380011898.01.T01:CDS
TCTTCACTAACCAGGTGTTG+AGG 0.585501 3:-7641393 None:intergenic
CTGGGTTCTGAACAGCTGAA+AGG 0.586271 3:+7642688 MsG0380011898.01.T01:CDS
GTAGGAAAATTGGGTTTGCG+TGG 0.592801 3:+7642911 MsG0380011898.01.T01:CDS
CACTAACCAGGTGTTGAGGG+AGG 0.596662 3:-7641389 None:intergenic
AATTGTAGATCGTAAATGGA+AGG 0.598698 3:+7641247 MsG0380011898.01.T01:CDS
AAGAGGTGATGCAGGTCTAG+TGG 0.600590 3:-7640965 None:intergenic
ACACTTGGTTCTTCAGTGCG+TGG 0.611516 3:+7642619 MsG0380011898.01.T01:CDS
TGTAGATCGTAAATGGAAGG+AGG 0.611934 3:+7641250 MsG0380011898.01.T01:CDS
ACTAACCAGGTGTTGAGGGA+GGG 0.618972 3:-7641388 None:intergenic
TATATAGTTACGGTGGACCT+GGG 0.620088 3:+7642670 MsG0380011898.01.T01:CDS
CTTTCAGCTGTTCAGAACCC+AGG 0.626176 3:-7642687 None:intergenic
AGCTTCACAACCAATACGGA+CGG 0.629115 3:+7641512 MsG0380011898.01.T01:CDS
TGTAGGATTCCTACTATAGG+GGG 0.629514 3:+7640938 MsG0380011898.01.T01:CDS
GGAATCCTACACAAACACAA+AGG 0.636836 3:-7640926 None:intergenic
CCAACGGTTCAGCTCCTCAG+TGG 0.666024 3:+7644263 MsG0380011898.01.T01:CDS
GAGAGGTAAAGAAAGATACA+GGG 0.667758 3:+7644219 MsG0380011898.01.T01:CDS
ATGTTGAAGTACAAATCCAA+CGG 0.669092 3:+7644247 MsG0380011898.01.T01:CDS
ATTGACATGAAATTTGATGG+CGG 0.676313 3:+7642646 MsG0380011898.01.T01:CDS
ACATGTGGTGTAAATTATGG+CGG 0.692070 3:+7644393 MsG0380011898.01.T01:three_prime_UTR
GAGATGTTACTTCAACGAAG+AGG 0.709606 3:-7640982 None:intergenic
TGGCGGATATATAGTTACGG+TGG 0.725652 3:+7642663 MsG0380011898.01.T01:CDS
GTTGAAGTAACATCTCGTGG+TGG 0.754811 3:+7640989 MsG0380011898.01.T01:CDS
TTCCATATAAGAGTCCACTG+AGG 0.814756 3:-7644277 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTAGTAATATATGTA+TGG + Chr3:7643187-7643206 MsG0380011898.01.T01:intron 10.0%
!! AAATAAAATCAAAGAACAAA+AGG - Chr3:7644311-7644330 None:intergenic 15.0%
!! AAATTCTACTTATGAAAAAA+TGG + Chr3:7643764-7643783 MsG0380011898.01.T01:intron 15.0%
!! AAATTTAAGAAAAAGATTAG+AGG - Chr3:7641219-7641238 None:intergenic 15.0%
!! TGCATTAAATTAACAAAAAA+TGG - Chr3:7644178-7644197 None:intergenic 15.0%
!!! ACAAATCTATAAATGTTTTA+AGG - Chr3:7643518-7643537 None:intergenic 15.0%
!!! ATGATTTGTTTCTTTAATTT+AGG + Chr3:7642093-7642112 MsG0380011898.01.T01:intron 15.0%
!!! ATTTTTTGTTAATTTAATGC+AGG + Chr3:7644177-7644196 MsG0380011898.01.T01:intron 15.0%
!!! CTTAGTTTTATATGAAAATA+GGG + Chr3:7643790-7643809 MsG0380011898.01.T01:intron 15.0%
!!! TATTTTTTTATCTCTTGTTA+CGG + Chr3:7641997-7642016 MsG0380011898.01.T01:intron 15.0%
!!! TCTTAGTTTTATATGAAAAT+AGG + Chr3:7643789-7643808 MsG0380011898.01.T01:intron 15.0%
!!! TCTTTTTCTTAAATTTATGT+AGG + Chr3:7641223-7641242 MsG0380011898.01.T01:intron 15.0%
!! ACACAAAGCTAAAAAAAAAA+TGG - Chr3:7642124-7642143 None:intergenic 20.0%
!! TGTCTTTATAATTATCTATG+TGG + Chr3:7643950-7643969 MsG0380011898.01.T01:intron 20.0%
!!! AATTTTCAAAACGTAATTAG+AGG - Chr3:7641431-7641450 None:intergenic 20.0%
!!! ATTTTCAAAACGTAATTAGA+GGG - Chr3:7641430-7641449 None:intergenic 20.0%
!!! ATTTTTTTATCTCTTGTTAC+GGG + Chr3:7641998-7642017 MsG0380011898.01.T01:intron 20.0%
!!! TCTTTTTCTATGTTTTTATG+TGG + Chr3:7641758-7641777 MsG0380011898.01.T01:intron 20.0%
!!! TTTAATTTGTCTTACAAATC+AGG + Chr3:7643143-7643162 MsG0380011898.01.T01:intron 20.0%
! ACAATTGACATGAAATTTGA+TGG + Chr3:7642643-7642662 MsG0380011898.01.T01:CDS 25.0%
! AGAAACAAATCATCTAAGAA+TGG - Chr3:7642086-7642105 None:intergenic 25.0%
! ATACAAGATTATAAAGTAGC+AGG + Chr3:7643573-7643592 MsG0380011898.01.T01:intron 25.0%
! ATATACTTTCCATTTATCTG+TGG + Chr3:7642548-7642567 MsG0380011898.01.T01:intron 25.0%
! GAAAACACATAAGAAAGTAA+AGG - Chr3:7641090-7641109 None:intergenic 25.0%
! GTTACAAATAATAGATCACT+AGG - Chr3:7643393-7643412 None:intergenic 25.0%
! TAATTTAATGCAGGTTTATC+AGG + Chr3:7644186-7644205 MsG0380011898.01.T01:intron 25.0%
! TCATAAGTAGAATTTGAAAG+TGG - Chr3:7643759-7643778 None:intergenic 25.0%
! TGTCAGTTACAAAAAGAAAA+AGG - Chr3:7643028-7643047 None:intergenic 25.0%
! TTGAAAAGACAACTAGAAAA+GGG - Chr3:7643599-7643618 None:intergenic 25.0%
!! AAGCTATGGATTATAATTCA+AGG + Chr3:7644504-7644523 MsG0380011898.01.T01:three_prime_UTR 25.0%
!! AATTCAATGAATCCAACTTT+TGG - Chr3:7643495-7643514 None:intergenic 25.0%
!! ATATCTGGAATAGTTTATTC+AGG + Chr3:7643106-7643125 MsG0380011898.01.T01:intron 25.0%
!! ATTAAAACAGCTTTTCAGTT+TGG + Chr3:7641126-7641145 MsG0380011898.01.T01:intron 25.0%
!!! TGCTTCTTTTATTTTGAAAC+TGG + Chr3:7642042-7642061 MsG0380011898.01.T01:intron 25.0%
AAAAAGAAAAAGGAATCTGC+AGG - Chr3:7643018-7643037 None:intergenic 30.0%
AAAACGTAATTAGAGGGAAA+AGG - Chr3:7641424-7641443 None:intergenic 30.0%
AAAATAGGGCTGTAATAGTA+AGG + Chr3:7643804-7643823 MsG0380011898.01.T01:intron 30.0%
AAACCTTTACCACAGATAAA+TGG - Chr3:7642560-7642579 None:intergenic 30.0%
AAGCCAGTAGAAAAATAGTT+AGG - Chr3:7643662-7643681 None:intergenic 30.0%
AATAGTTTATTCAGGCACAT+AGG + Chr3:7643114-7643133 MsG0380011898.01.T01:intron 30.0%
AATTGTAGATCGTAAATGGA+AGG + Chr3:7641247-7641266 MsG0380011898.01.T01:CDS 30.0%
AGGTAATTGTAGATCGTAAA+TGG + Chr3:7641243-7641262 MsG0380011898.01.T01:intron 30.0%
ATCAAAGAACAAAAGGTTTG+AGG - Chr3:7644304-7644323 None:intergenic 30.0%
ATGAAATAGAGGAAAAGGAA+AGG + Chr3:7643075-7643094 MsG0380011898.01.T01:intron 30.0%
ATGTTGAAGTACAAATCCAA+CGG + Chr3:7644247-7644266 MsG0380011898.01.T01:CDS 30.0%
ATTGACATGAAATTTGATGG+CGG + Chr3:7642646-7642665 MsG0380011898.01.T01:CDS 30.0%
CTACTATTGTAAGAAGTTAG+AGG - Chr3:7641655-7641674 None:intergenic 30.0%
CTTTGTGTACATCTAATCTA+TGG + Chr3:7642136-7642155 MsG0380011898.01.T01:intron 30.0%
GAAAAACTGATAGCTTAGAA+GGG + Chr3:7644360-7644379 MsG0380011898.01.T01:exon 30.0%
GAGCAATTAGTAGGAAAATT+GGG + Chr3:7642902-7642921 MsG0380011898.01.T01:CDS 30.0%
GATCTAATGAATCCAAAAGT+TGG + Chr3:7643480-7643499 MsG0380011898.01.T01:intron 30.0%
GCATAATGATGAGATATGAA+TGG - Chr3:7643903-7643922 None:intergenic 30.0%
GGAAAGGTTATTTGTATATC+TGG + Chr3:7643091-7643110 MsG0380011898.01.T01:intron 30.0%
GGATGTATAGTCAGTATTAT+TGG - Chr3:7641903-7641922 None:intergenic 30.0%
GTTGAAAAGACAACTAGAAA+AGG - Chr3:7643600-7643619 None:intergenic 30.0%
GTTTAATGACGATGAAATAG+AGG + Chr3:7643064-7643083 MsG0380011898.01.T01:intron 30.0%
TATATCGACCGAAATCAAAT+AGG + Chr3:7642811-7642830 MsG0380011898.01.T01:intron 30.0%
TCATTAGATCACAAATGACA+AGG - Chr3:7643470-7643489 None:intergenic 30.0%
TGAAAAACTGATAGCTTAGA+AGG + Chr3:7644359-7644378 MsG0380011898.01.T01:exon 30.0%
TTATGTGAAACCATGAATGA+TGG - Chr3:7641924-7641943 None:intergenic 30.0%
TTGACATGTGGTGTAAATTA+TGG + Chr3:7644390-7644409 MsG0380011898.01.T01:three_prime_UTR 30.0%
TTTCCATTTATCTGTGGTAA+AGG + Chr3:7642554-7642573 MsG0380011898.01.T01:intron 30.0%
! AATGATCATTTGTGATGGAA+TGG + Chr3:7641730-7641749 MsG0380011898.01.T01:intron 30.0%
! CTAAGCTATCAGTTTTTCAT+GGG - Chr3:7644358-7644377 None:intergenic 30.0%
! GTTTTTCTTAGATCAGTGAA+TGG + Chr3:7644460-7644479 MsG0380011898.01.T01:three_prime_UTR 30.0%
! TAACCACTCCTATTTGATTT+CGG - Chr3:7642822-7642841 None:intergenic 30.0%
! TAAGCTATCAGTTTTTCATG+GGG - Chr3:7644357-7644376 None:intergenic 30.0%
! TCTAAGCTATCAGTTTTTCA+TGG - Chr3:7644359-7644378 None:intergenic 30.0%
!! AGACCTAACTATTTTTCTAC+TGG + Chr3:7643656-7643675 MsG0380011898.01.T01:intron 30.0%
!! AGCTATTAGCTGTTTTCATT+AGG - Chr3:7642386-7642405 None:intergenic 30.0%
!! CTATGTTTTTATGTGGTGTT+TGG + Chr3:7641765-7641784 MsG0380011898.01.T01:intron 30.0%
AACAGAGTCCTAATCTATGT+TGG + Chr3:7642518-7642537 MsG0380011898.01.T01:intron 35.0%
AATAGTAGTAGCAGAGATAG+GGG + Chr3:7641667-7641686 MsG0380011898.01.T01:intron 35.0%
ACAAATGACAAGGAACATCA+AGG - Chr3:7643460-7643479 None:intergenic 35.0%
ACAATAGTAGTAGCAGAGAT+AGG + Chr3:7641665-7641684 MsG0380011898.01.T01:intron 35.0%
ACATAGATTAGGACTCTGTT+TGG - Chr3:7642518-7642537 None:intergenic 35.0%
ACATGTGGTGTAAATTATGG+CGG + Chr3:7644393-7644412 MsG0380011898.01.T01:three_prime_UTR 35.0%
ATATACACTGTAAAGCCTGT+GGG - Chr3:7643636-7643655 None:intergenic 35.0%
ATCAATGATTCACCTGTTCA+GGG + Chr3:7641542-7641561 MsG0380011898.01.T01:CDS 35.0%
ATGTAACCTGTTAGCTCATT+CGG - Chr3:7641835-7641854 None:intergenic 35.0%
ATTTACTGCCATAAGCACAT+AGG + Chr3:7642269-7642288 MsG0380011898.01.T01:intron 35.0%
CAATACTCTGACTACATCAA+CGG - Chr3:7642984-7643003 None:intergenic 35.0%
CAATAGCTTCACAACCAATA+CGG + Chr3:7641508-7641527 MsG0380011898.01.T01:CDS 35.0%
CAATAGTAGTAGCAGAGATA+GGG + Chr3:7641666-7641685 MsG0380011898.01.T01:intron 35.0%
CATGTATGTTTCATGAGACA+AGG - Chr3:7641066-7641085 None:intergenic 35.0%
CATTGCTTGAAACATGATAC+AGG - Chr3:7642717-7642736 None:intergenic 35.0%
CTACGTCAAGAAATATTAGG+AGG + Chr3:7643716-7643735 MsG0380011898.01.T01:intron 35.0%
CTCCTAATATTTCTTGACGT+AGG - Chr3:7643718-7643737 None:intergenic 35.0%
GAATCCTACACAAACACAAA+GGG - Chr3:7640928-7640947 None:intergenic 35.0%
GACCTACGTCAAGAAATATT+AGG + Chr3:7643713-7643732 MsG0380011898.01.T01:intron 35.0%
GACTATACATCCATCATTCA+TGG + Chr3:7641911-7641930 MsG0380011898.01.T01:intron 35.0%
GAGAGGTAAAGAAAGATACA+GGG + Chr3:7644219-7644238 MsG0380011898.01.T01:CDS 35.0%
GGAGCAATTAGTAGGAAAAT+TGG + Chr3:7642901-7642920 MsG0380011898.01.T01:CDS 35.0%
GGATAGAGGAAATTATTGAG+TGG - Chr3:7641464-7641483 None:intergenic 35.0%
GGATCAATGATCATTTGTGA+TGG + Chr3:7641725-7641744 MsG0380011898.01.T01:intron 35.0%
GTGATAAAGCAACGATAGAT+AGG - Chr3:7641336-7641355 None:intergenic 35.0%
GTTTCAAGCAATGCATCTAA+GGG + Chr3:7642724-7642743 MsG0380011898.01.T01:intron 35.0%
TAGGTATCTTGGAGAGTTTA+AGG - Chr3:7642367-7642386 None:intergenic 35.0%
TATATACACTGTAAAGCCTG+TGG - Chr3:7643637-7643656 None:intergenic 35.0%
TATCAATGATTCACCTGTTC+AGG + Chr3:7641541-7641560 MsG0380011898.01.T01:CDS 35.0%
TCAGATTTGCAAACTATGCT+AGG + Chr3:7643272-7643291 MsG0380011898.01.T01:intron 35.0%
TCCACTTACCAACATAGATT+AGG - Chr3:7642529-7642548 None:intergenic 35.0%
TCTAAGGGTTCTTCTATTGA+AGG + Chr3:7642739-7642758 MsG0380011898.01.T01:intron 35.0%
TCTTAGCACATGATAAGCTA+TGG + Chr3:7644490-7644509 MsG0380011898.01.T01:three_prime_UTR 35.0%
TGACGATGAAATAGAGGAAA+AGG + Chr3:7643070-7643089 MsG0380011898.01.T01:intron 35.0%
TGAGAGGTAAAGAAAGATAC+AGG + Chr3:7644218-7644237 MsG0380011898.01.T01:CDS 35.0%
TGTGTAGGATTCCTACTATA+GGG + Chr3:7640936-7640955 MsG0380011898.01.T01:CDS 35.0%
TGTTTCAAGCAATGCATCTA+AGG + Chr3:7642723-7642742 MsG0380011898.01.T01:intron 35.0%
TTGTGTAGGATTCCTACTAT+AGG + Chr3:7640935-7640954 MsG0380011898.01.T01:CDS 35.0%
TTTACTGCCATAAGCACATA+GGG + Chr3:7642270-7642289 MsG0380011898.01.T01:intron 35.0%
! ATCATTTGTGATGGAATGGT+TGG + Chr3:7641734-7641753 MsG0380011898.01.T01:intron 35.0%
! ATCCAAAGCTTTATCACACT+AGG - Chr3:7642233-7642252 None:intergenic 35.0%
! GTAACTGACATATTTTCCTC+TGG + Chr3:7643038-7643057 MsG0380011898.01.T01:intron 35.0%
! TCCTAATCTATGTTGGTAAG+TGG + Chr3:7642525-7642544 MsG0380011898.01.T01:intron 35.0%
! TTTTTGCTGAGAATTATGCC+AGG + Chr3:7642851-7642870 MsG0380011898.01.T01:intron 35.0%
!! GCTGTTTTCATTAGGTATCT+TGG - Chr3:7642378-7642397 None:intergenic 35.0%
!! TCGGGTTATAGTCTTATTGT+CGG - Chr3:7641816-7641835 None:intergenic 35.0%
!! TGATGGCGGATATATAGTTA+CGG + Chr3:7642660-7642679 MsG0380011898.01.T01:CDS 35.0%
!!! TTTTCTACTGGCTTCTTAAG+AGG + Chr3:7643668-7643687 MsG0380011898.01.T01:intron 35.0%
AAGTCTATACCTGTCTTGCT+GGG - Chr3:7642951-7642970 None:intergenic 40.0%
AGGTAGTATCTTCACTAACC+AGG - Chr3:7641404-7641423 None:intergenic 40.0%
ATATATAGTTACGGTGGACC+TGG + Chr3:7642669-7642688 MsG0380011898.01.T01:CDS 40.0%
ATCGTCATTAAACAAGCCAG+AGG - Chr3:7643057-7643076 None:intergenic 40.0%
CACCTAGTGTGATAAAGCTT+TGG + Chr3:7642228-7642247 MsG0380011898.01.T01:intron 40.0%
CATAACAAGCGCATCATTCA+TGG + Chr3:7641301-7641320 MsG0380011898.01.T01:CDS 40.0%
GAAACTAACATCGCACAAAG+TGG - Chr3:7643925-7643944 None:intergenic 40.0%
GAATGAGCTAACAGGTTACA+TGG + Chr3:7641834-7641853 MsG0380011898.01.T01:intron 40.0%
GGAATCCTACACAAACACAA+AGG - Chr3:7640929-7640948 None:intergenic 40.0%
GTGTAGGATTCCTACTATAG+GGG + Chr3:7640937-7640956 MsG0380011898.01.T01:CDS 40.0%
GTGTGAAAGGAAGGATGTTA+AGG + Chr3:7643547-7643566 MsG0380011898.01.T01:intron 40.0%
TATAACCCGAATGAGCTAAC+AGG + Chr3:7641826-7641845 MsG0380011898.01.T01:intron 40.0%
TATATAGTTACGGTGGACCT+GGG + Chr3:7642670-7642689 MsG0380011898.01.T01:CDS 40.0%
TATCAGGAGAAAAGGTTGAG+AGG + Chr3:7644202-7644221 MsG0380011898.01.T01:CDS 40.0%
TCTATGTGGTGAGATGTGAT+TGG + Chr3:7643964-7643983 MsG0380011898.01.T01:intron 40.0%
TGATCCATGACAAATGTCAG+AGG - Chr3:7641711-7641730 None:intergenic 40.0%
TGCAGGTTTATCAGGAGAAA+AGG + Chr3:7644194-7644213 MsG0380011898.01.T01:intron 40.0%
TGTAACCTGTTAGCTCATTC+GGG - Chr3:7641834-7641853 None:intergenic 40.0%
TGTAGATCGTAAATGGAAGG+AGG + Chr3:7641250-7641269 MsG0380011898.01.T01:CDS 40.0%
TGTAGGATTCCTACTATAGG+GGG + Chr3:7640938-7640957 MsG0380011898.01.T01:CDS 40.0%
TGTTCCTCTGACATTTGTCA+TGG + Chr3:7641704-7641723 MsG0380011898.01.T01:intron 40.0%
TTACTGCCATAAGCACATAG+GGG + Chr3:7642271-7642290 MsG0380011898.01.T01:intron 40.0%
TTCCATATAAGAGTCCACTG+AGG - Chr3:7644280-7644299 None:intergenic 40.0%
TTCCTACTAATTGCTCCTTG+TGG - Chr3:7642898-7642917 None:intergenic 40.0%
TTCGTTGAAGTAACATCTCG+TGG + Chr3:7640986-7641005 MsG0380011898.01.T01:CDS 40.0%
TTGGGAGAGCTTATGGAAAT+TGG + Chr3:7642299-7642318 MsG0380011898.01.T01:intron 40.0%
TTGTTGTCAGAGTGTGTGAA+AGG + Chr3:7643534-7643553 MsG0380011898.01.T01:intron 40.0%
TTTGCCCTTTGTGTTTGTGT+AGG + Chr3:7640921-7640940 MsG0380011898.01.T01:CDS 40.0%
! AAGCTTTATCACACTAGGTG+AGG - Chr3:7642228-7642247 None:intergenic 40.0%
! AAGGGTAGCTTTTTGACATG+TGG + Chr3:7644378-7644397 MsG0380011898.01.T01:three_prime_UTR 40.0%
! ATCTCGTGGTGGTATTGAAA+AGG + Chr3:7641000-7641019 MsG0380011898.01.T01:CDS 40.0%
! CATGAATGATGCGCTTGTTA+TGG - Chr3:7641303-7641322 None:intergenic 40.0%
! GAGATGTTACTTCAACGAAG+AGG - Chr3:7640985-7641004 None:intergenic 40.0%
!! AGGTCGTAGACTATTTCTAC+AGG - Chr3:7643698-7643717 None:intergenic 40.0%
!! ATGCGCTTGTTATGGTATCT+CGG - Chr3:7641295-7641314 None:intergenic 40.0%
!! CGTATTGGTTGTGAAGCTAT+TGG - Chr3:7641510-7641529 None:intergenic 40.0%
!! GGTCGTAGACTATTTCTACA+GGG - Chr3:7643697-7643716 None:intergenic 40.0%
!! GTCGTAGACTATTTCTACAG+GGG - Chr3:7643696-7643715 None:intergenic 40.0%
!! TTCATTGACTTACCCTGAAC+AGG - Chr3:7641557-7641576 None:intergenic 40.0%
!!! CTACCATTTTTTGCTATCCG+CGG + Chr3:7643352-7643371 MsG0380011898.01.T01:intron 40.0%
AACAGTCCCCTATGTGCTTA+TGG - Chr3:7642280-7642299 None:intergenic 45.0%
AAGCACATAGGGGACTGTTT+GGG + Chr3:7642281-7642300 MsG0380011898.01.T01:intron 45.0%
AAGGCAGTTTCGCAAATGAC+AGG - Chr3:7643441-7643460 None:intergenic 45.0%
AGCTTCACAACCAATACGGA+CGG + Chr3:7641512-7641531 MsG0380011898.01.T01:CDS 45.0%
AGTGTCTGTGCTGGACTAAT+TGG - Chr3:7642604-7642623 None:intergenic 45.0%
ATTAGTCCAGCACAGACACT+TGG + Chr3:7642604-7642623 MsG0380011898.01.T01:CDS 45.0%
CAACCGCGGATAGCAAAAAA+TGG - Chr3:7643358-7643377 None:intergenic 45.0%
CAAGTCTATACCTGTCTTGC+TGG - Chr3:7642952-7642971 None:intergenic 45.0%
CCAGCTACTTAGATCAAACG+AGG - Chr3:7642205-7642224 None:intergenic 45.0%
CCTCGTTTGATCTAAGTAGC+TGG + Chr3:7642202-7642221 MsG0380011898.01.T01:intron 45.0%
CGACCGAAATCAAATAGGAG+TGG + Chr3:7642816-7642835 MsG0380011898.01.T01:intron 45.0%
GTAGGAAAATTGGGTTTGCG+TGG + Chr3:7642911-7642930 MsG0380011898.01.T01:CDS 45.0%
GTTGAAGTAACATCTCGTGG+TGG + Chr3:7640989-7641008 MsG0380011898.01.T01:CDS 45.0%
GTTTCGCAAATGACAGGCTA+AGG - Chr3:7643435-7643454 None:intergenic 45.0%
TAAGCACATAGGGGACTGTT+TGG + Chr3:7642280-7642299 MsG0380011898.01.T01:intron 45.0%
TGTCAGAGTGTGTGAAAGGA+AGG + Chr3:7643538-7643557 MsG0380011898.01.T01:intron 45.0%
! ACATTTGAGATTGCTCCCAC+AGG + Chr3:7643618-7643637 MsG0380011898.01.T01:intron 45.0%
! ACGTTTCCACTCAAAGCATC+TGG - Chr3:7641485-7641504 None:intergenic 45.0%
! CACTCAAAGCATCTGGATAG+AGG - Chr3:7641478-7641497 None:intergenic 45.0%
! CTCCTCAGTGGACTCTTATA+TGG + Chr3:7644275-7644294 MsG0380011898.01.T01:CDS 45.0%
! CTCTATCCAGATGCTTTGAG+TGG + Chr3:7641476-7641495 MsG0380011898.01.T01:intron 45.0%
! TCTTCACTAACCAGGTGTTG+AGG - Chr3:7641396-7641415 None:intergenic 45.0%
! TGGCGGATATATAGTTACGG+TGG + Chr3:7642663-7642682 MsG0380011898.01.T01:CDS 45.0%
!! CTTCACTAACCAGGTGTTGA+GGG - Chr3:7641395-7641414 None:intergenic 45.0%
!!! CATTTTTTGCTATCCGCGGT+TGG + Chr3:7643356-7643375 MsG0380011898.01.T01:intron 45.0%
AAGAGGTGATGCAGGTCTAG+TGG - Chr3:7640968-7640987 None:intergenic 50.0%
AGTGGCTTACCCCCTATAGT+AGG - Chr3:7640950-7640969 None:intergenic 50.0%
CCTTGTGGCCTGCAAAATGA+GGG - Chr3:7642883-7642902 None:intergenic 50.0%
CTTCAACGAAGAGGTGATGC+AGG - Chr3:7640976-7640995 None:intergenic 50.0%
CTTTCAGCTGTTCAGAACCC+AGG - Chr3:7642690-7642709 None:intergenic 50.0%
GAAGAACCAAGTGTCTGTGC+TGG - Chr3:7642613-7642632 None:intergenic 50.0%
GGAAAATTGGGTTTGCGTGG+AGG + Chr3:7642914-7642933 MsG0380011898.01.T01:CDS 50.0%
GGACTGTTTGGGAGAGCTTA+TGG + Chr3:7642292-7642311 MsG0380011898.01.T01:intron 50.0%
GGCCACAAGGAGCAATTAGT+AGG + Chr3:7642893-7642912 MsG0380011898.01.T01:intron 50.0%
TCCTTGTGGCCTGCAAAATG+AGG - Chr3:7642884-7642903 None:intergenic 50.0%
! ACACTTGGTTCTTCAGTGCG+TGG + Chr3:7642619-7642638 MsG0380011898.01.T01:CDS 50.0%
! GCAAAATGAGGGCTTTAGCC+TGG - Chr3:7642872-7642891 None:intergenic 50.0%
! GGCTAAAGCCCTCATTTTGC+AGG + Chr3:7642872-7642891 MsG0380011898.01.T01:intron 50.0%
!! ACTAACCAGGTGTTGAGGGA+GGG - Chr3:7641391-7641410 None:intergenic 50.0%
!! CTGGGTTCTGAACAGCTGAA+AGG + Chr3:7642688-7642707 MsG0380011898.01.T01:CDS 50.0%
GATAGCAGCACCGTCCGTAT+TGG - Chr3:7641525-7641544 None:intergenic 55.0%
GGAATCAGTGTTGCCAACCG+CGG - Chr3:7643372-7643391 None:intergenic 55.0%
TCTGACAGACCCAGCAAGAC+AGG + Chr3:7642939-7642958 MsG0380011898.01.T01:CDS 55.0%
! CCCTCATTTTGCAGGCCACA+AGG + Chr3:7642880-7642899 MsG0380011898.01.T01:intron 55.0%
!! CACTAACCAGGTGTTGAGGG+AGG - Chr3:7641392-7641411 None:intergenic 55.0%
CAAGTCCCTCCCTCAACACC+TGG + Chr3:7641383-7641402 MsG0380011898.01.T01:CDS 60.0%
CCAACGGTTCAGCTCCTCAG+TGG + Chr3:7644263-7644282 MsG0380011898.01.T01:CDS 60.0%
CCACTGAGGAGCTGAACCGT+TGG - Chr3:7644266-7644285 None:intergenic 60.0%
GCTATTGCGCTGCTGCGTAG+CGG + Chr3:7643317-7643336 MsG0380011898.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 7640917 7644566 7640917 ID=MsG0380011898.01;Name=MsG0380011898.01
Chr3 mRNA 7640917 7644566 7640917 ID=MsG0380011898.01.T01;Parent=MsG0380011898.01;Name=MsG0380011898.01.T01;_AED=0.43;_eAED=0.44;_QI=0|0.8|0.66|1|0.6|0.5|6|197|233
Chr3 exon 7644199 7644566 7644199 ID=MsG0380011898.01.T01:exon:3459;Parent=MsG0380011898.01.T01
Chr3 exon 7642894 7642960 7642894 ID=MsG0380011898.01.T01:exon:3458;Parent=MsG0380011898.01.T01
Chr3 exon 7642596 7642716 7642596 ID=MsG0380011898.01.T01:exon:3457;Parent=MsG0380011898.01.T01
Chr3 exon 7641486 7641563 7641486 ID=MsG0380011898.01.T01:exon:3456;Parent=MsG0380011898.01.T01
Chr3 exon 7641245 7641404 7641245 ID=MsG0380011898.01.T01:exon:3455;Parent=MsG0380011898.01.T01
Chr3 exon 7640917 7641021 7640917 ID=MsG0380011898.01.T01:exon:3454;Parent=MsG0380011898.01.T01
Chr3 CDS 7640917 7641021 7640917 ID=MsG0380011898.01.T01:cds;Parent=MsG0380011898.01.T01
Chr3 CDS 7641245 7641404 7641245 ID=MsG0380011898.01.T01:cds;Parent=MsG0380011898.01.T01
Chr3 CDS 7641486 7641563 7641486 ID=MsG0380011898.01.T01:cds;Parent=MsG0380011898.01.T01
Chr3 CDS 7642596 7642716 7642596 ID=MsG0380011898.01.T01:cds;Parent=MsG0380011898.01.T01
Chr3 CDS 7642894 7642960 7642894 ID=MsG0380011898.01.T01:cds;Parent=MsG0380011898.01.T01
Chr3 CDS 7644199 7644369 7644199 ID=MsG0380011898.01.T01:cds;Parent=MsG0380011898.01.T01
Chr3 three_prime_UTR 7644370 7644566 7644370 ID=MsG0380011898.01.T01:three_prime_utr;Parent=MsG0380011898.01.T01
Gene Sequence

>MsG0380011898.01.T01

ATGTTTTGCCCTTTGTGTTTGTGTAGGATTCCTACTATAGGGGGTAAGCCACTAGACCTGCATCACCTCTTCGTTGAAGTAACATCTCGTGGTGGTATTGAAAAGGTAATTGTAGATCGTAAATGGAAGGAGGTAATAATGAGCTTCAACTTCCGAGATACCATAACAAGCGCATCATTCATGGTGCGCAAGACCTATCTATCGTTGCTTTATCACTTTGAACAAGCGTATTATTTTCGCAAGCAAGTCCCTCCCTCAACACCTGATGCTTTGAGTGGAAACGTTGCCAATAGCTTCACAACCAATACGGACGGTGCTGCTATCAATGATTCACCTGTTCAGGTTAGTCCAATTAGTCCAGCACAGACACTTGGTTCTTCAGTGCGTGGAACAATTGACATGAAATTTGATGGCGGATATATAGTTACGGTGGACCTGGGTTCTGAACAGCTGAAAGGTGTCCTGCCACAAGGAGCAATTAGTAGGAAAATTGGGTTTGCGTGGAGGAATCTGACAGACCCAGCAAGACAGGTTTATCAGGAGAAAAGGTTGAGAGGTAAAGAAAGATACAGGGTTGAAATGTTGAAGTACAAATCCAACGGTTCAGCTCCTCAGTGGACTCTTATATGGAATCCTCAAACCTTTTGTTCTTTGATTTTATTTCATCTTTTTTATACAGAGAATTTCCCCATGAAAAACTGA
Protein sequence

>MsG0380011898.01.T01

MFCPLCLCRIPTIGGKPLDLHHLFVEVTSRGGIEKVIVDRKWKEVIMSFNFRDTITSASFMVRKTYLSLLYHFEQAYYFRKQVPPSTPDALSGNVANSFTTNTDGAAINDSPVQVSPISPAQTLGSSVRGTIDMKFDGGYIVTVDLGSEQLKGVLPQGAISRKIGFAWRNLTDPARQVYQEKRLRGKERYRVEMLKYKSNGSAPQWTLIWNPQTFCSLILFHLFYTENFPMKN*