AlfalfaGEDB | MsG0380011898.01

M. sativa cultivar ZhongmuNo.1 / MsG0380011898.01

KEGG: -
GO: GO:0003677
PFAM: PF00505 PF01388

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011898.01.T01	AES68536.1	88.263	213	12	1	9	208	62	274	9.94E-131	380

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011898.01.T01	Q9LTT3	51.007	149	57	3	9	155	62	196	2.42E-38	138

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011898.01.T01	G7J0D1	88.263	213	12	1	9	208	62	274	4.75e-131	380

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TFs/TRs:

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Gene ID	Type	Classification
MsG0380011898.01.T01	TR	ARID

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048817.01	MsG0380011898.01	0.805367	1.381452e-49	7.295305e-47
MsG0280011261.01	MsG0380011898.01	0.800720	1.262263e-48	5.919536e-46
MsG0380011898.01	MsG0380013178.01	0.803267	3.783061e-49	1.892689e-46
MsG0380011898.01	MsG0580025467.01	0.831457	1.651118e-55	1.792871e-52
MsG0380011898.01	MsG0780036705.01	0.815141	1.076257e-51	7.359649e-49
MsG0380011898.01	MsG0880043905.01	0.801551	8.538012e-49	4.088950e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011898.01.T01	MTR_3g009890	88.263	213	12	1	9	208	62	274	1.20e-134	380
MsG0380011898.01.T01	MTR_1g116180	50.000	164	65	4	10	158	58	219	1.06e-40	142
MsG0380011898.01.T01	MTR_1g116180	50.000	164	65	4	10	158	58	219	1.13e-39	141
MsG0380011898.01.T01	MTR_7g005970	48.795	166	74	3	10	164	59	224	4.89e-39	140
MsG0380011898.01.T01	MTR_3g114920	50.993	151	66	3	10	155	54	201	9.22e-39	137
MsG0380011898.01.T01	MTR_2g084410	90.244	41	4	0	115	155	215	255	2.60e-16	76.3
MsG0380011898.01.T01	MTR_2g084375	90.244	41	4	0	115	155	201	241	3.02e-16	75.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011898.01.T01	AT3G13350	51.007	149	57	3	9	155	62	196	2.47e-39	138
MsG0380011898.01.T01	AT1G55650	35.246	244	89	6	9	199	56	283	2.85e-38	136
MsG0380011898.01.T01	AT1G04880	45.122	164	78	4	10	161	52	215	9.08e-36	131
MsG0380011898.01.T01	AT1G76110	46.753	154	75	3	10	159	61	211	2.52e-32	120

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Find 70 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAAATCAAAGAACAAA+AGG	0.486150	3:-7644308	None:intergenic
AAGAGGTGATGCAGGTCTAG+TGG	0.600590	3:-7640965	None:intergenic
AAGCTATGGATTATAATTCA+AGG	0.488473	3:+7644504	MsG0380011898.01.T01:three_prime_UTR
AAGTCTATACCTGTCTTGCT+GGG	0.513096	3:-7642948	None:intergenic
AATTGTAGATCGTAAATGGA+AGG	0.598698	3:+7641247	MsG0380011898.01.T01:CDS
ACAATTGACATGAAATTTGA+TGG	0.468681	3:+7642643	MsG0380011898.01.T01:CDS
ACACTTGGTTCTTCAGTGCG+TGG	0.611516	3:+7642619	MsG0380011898.01.T01:CDS
ACATGTGGTGTAAATTATGG+CGG	0.692070	3:+7644393	MsG0380011898.01.T01:three_prime_UTR
ACTAACCAGGTGTTGAGGGA+GGG	0.618972	3:-7641388	None:intergenic
AGCTTCACAACCAATACGGA+CGG	0.629115	3:+7641512	MsG0380011898.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGAAAAAGGAATCTGC+AGG	-	Chr3:7643018-7643037	None:intergenic	30.0%
AAAACGTAATTAGAGGGAAA+AGG	-	Chr3:7641424-7641443	None:intergenic	30.0%
AAAATAGGGCTGTAATAGTA+AGG	+	Chr3:7643804-7643823	MsG0380011898.01.T01:intron	30.0%
AAACCTTTACCACAGATAAA+TGG	-	Chr3:7642560-7642579	None:intergenic	30.0%
AAGCCAGTAGAAAAATAGTT+AGG	-	Chr3:7643662-7643681	None:intergenic	30.0%
AATAGTTTATTCAGGCACAT+AGG	+	Chr3:7643114-7643133	MsG0380011898.01.T01:intron	30.0%
AATTGTAGATCGTAAATGGA+AGG	+	Chr3:7641247-7641266	MsG0380011898.01.T01:CDS	30.0%
AGGTAATTGTAGATCGTAAA+TGG	+	Chr3:7641243-7641262	MsG0380011898.01.T01:intron	30.0%
ATCAAAGAACAAAAGGTTTG+AGG	-	Chr3:7644304-7644323	None:intergenic	30.0%
ATGAAATAGAGGAAAAGGAA+AGG	+	Chr3:7643075-7643094	MsG0380011898.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	7640917	7644566	7640917	ID=MsG0380011898.01;Name=MsG0380011898.01
Chr3	mRNA	7640917	7644566	7640917	ID=MsG0380011898.01.T01;Parent=MsG0380011898.01;Name=MsG0380011898.01.T01;_AED=0.43;_eAED=0.44;_QI=0\|0.8\|0.66\|1\|0.6\|0.5\|6\|197\|233
Chr3	exon	7644199	7644566	7644199	ID=MsG0380011898.01.T01:exon:3459;Parent=MsG0380011898.01.T01
Chr3	exon	7642894	7642960	7642894	ID=MsG0380011898.01.T01:exon:3458;Parent=MsG0380011898.01.T01
Chr3	exon	7642596	7642716	7642596	ID=MsG0380011898.01.T01:exon:3457;Parent=MsG0380011898.01.T01
Chr3	exon	7641486	7641563	7641486	ID=MsG0380011898.01.T01:exon:3456;Parent=MsG0380011898.01.T01
Chr3	exon	7641245	7641404	7641245	ID=MsG0380011898.01.T01:exon:3455;Parent=MsG0380011898.01.T01
Chr3	exon	7640917	7641021	7640917	ID=MsG0380011898.01.T01:exon:3454;Parent=MsG0380011898.01.T01
Chr3	CDS	7640917	7641021	7640917	ID=MsG0380011898.01.T01:cds;Parent=MsG0380011898.01.T01
Chr3	CDS	7641245	7641404	7641245	ID=MsG0380011898.01.T01:cds;Parent=MsG0380011898.01.T01
Chr3	CDS	7641486	7641563	7641486	ID=MsG0380011898.01.T01:cds;Parent=MsG0380011898.01.T01
Chr3	CDS	7642596	7642716	7642596	ID=MsG0380011898.01.T01:cds;Parent=MsG0380011898.01.T01
Chr3	CDS	7642894	7642960	7642894	ID=MsG0380011898.01.T01:cds;Parent=MsG0380011898.01.T01
Chr3	CDS	7644199	7644369	7644199	ID=MsG0380011898.01.T01:cds;Parent=MsG0380011898.01.T01
Chr3	three_prime_UTR	7644370	7644566	7644370	ID=MsG0380011898.01.T01:three_prime_utr;Parent=MsG0380011898.01.T01

Gene Sequence

>MsG0380011898.01.T01

ATGTTTTGCCCTTTGTGTTTGTGTAGGATTCCTACTATAGGGGGTAAGCCACTAGACCTGCATCACCTCTTCGTTGAAGTAACATCTCGTGGTGGTATTGAAAAGGTAATTGTAGATCGTAAATGGAAGGAGGTAATAATGAGCTTCAACTTCCGAGATACCATAACAAGCGCATCATTCATGGTGCGCAAGACCTATCTATCGTTGCTTTATCACTTTGAACAAGCGTATTATTTTCGCAAGCAAGTCCCTCCCTCAACACCTGATGCTTTGAGTGGAAACGTTGCCAATAGCTTCACAACCAATACGGACGGTGCTGCTATCAATGATTCACCTGTTCAGGTTAGTCCAATTAGTCCAGCACAGACACTTGGTTCTTCAGTGCGTGGAACAATTGACATGAAATTTGATGGCGGATATATAGTTACGGTGGACCTGGGTTCTGAACAGCTGAAAGGTGTCCTGCCACAAGGAGCAATTAGTAGGAAAATTGGGTTTGCGTGGAGGAATCTGACAGACCCAGCAAGACAGGTTTATCAGGAGAAAAGGTTGAGAGGTAAAGAAAGATACAGGGTTGAAATGTTGAAGTACAAATCCAACGGTTCAGCTCCTCAGTGGACTCTTATATGGAATCCTCAAACCTTTTGTTCTTTGATTTTATTTCATCTTTTTTATACAGAGAATTTCCCCATGAAAAACTGA

Protein sequence

>MsG0380011898.01.T01

MFCPLCLCRIPTIGGKPLDLHHLFVEVTSRGGIEKVIVDRKWKEVIMSFNFRDTITSASFMVRKTYLSLLYHFEQAYYFRKQVPPSTPDALSGNVANSFTTNTDGAAINDSPVQVSPISPAQTLGSSVRGTIDMKFDGGYIVTVDLGSEQLKGVLPQGAISRKIGFAWRNLTDPARQVYQEKRLRGKERYRVEMLKYKSNGSAPQWTLIWNPQTFCSLILFHLFYTENFPMKN*