Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048817.01.T01 | RHN63243.1 | 65.179 | 224 | 17 | 2 | 4 | 227 | 518 | 680 | 2.99E-87 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048817.01.T01 | Q944R7 | 42.079 | 202 | 52 | 4 | 5 | 202 | 567 | 707 | 6.70E-42 | 154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048817.01.T01 | A0A396IEK5 | 65.179 | 224 | 17 | 2 | 4 | 227 | 518 | 680 | 1.43e-87 | 281 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048817.01 | MsG0180000139.01 | 0.818774 | 1.644556e-52 | 1.242525e-49 |
| MsG0080048817.01 | MsG0180000152.01 | 0.817251 | 3.632497e-52 | 2.631818e-49 |
| MsG0080048817.01 | MsG0180000544.01 | -0.815037 | 1.134868e-51 | 7.739095e-49 |
| MsG0080048817.01 | MsG0180000614.01 | 0.819613 | 1.059163e-52 | 8.190199e-50 |
| MsG0080048817.01 | MsG0180000679.01 | 0.820359 | 7.149808e-53 | 5.644912e-50 |
| MsG0080048817.01 | MsG0180001118.01 | 0.805577 | 1.248305e-49 | 6.627722e-47 |
| MsG0080048817.01 | MsG0180001131.01 | 0.821876 | 3.198511e-53 | 2.634594e-50 |
| MsG0080048817.01 | MsG0180001141.01 | 0.841805 | 3.803636e-58 | 5.652663e-55 |
| MsG0080048817.01 | MsG0180001213.01 | 0.812602 | 3.903832e-51 | 2.492847e-48 |
| MsG0080048817.01 | MsG0180002458.01 | 0.853714 | 1.990370e-61 | 4.340252e-58 |
| MsG0080048817.01 | MsG0180002459.01 | 0.800064 | 1.716976e-48 | 7.919303e-46 |
| MsG0080048817.01 | MsG0180002482.01 | 0.840717 | 7.351266e-58 | 1.056223e-54 |
| MsG0080048817.01 | MsG0180003189.01 | 0.818235 | 2.178646e-52 | 1.621604e-49 |
| MsG0080048817.01 | MsG0180003697.01 | 0.850749 | 1.388784e-60 | 2.748161e-57 |
| MsG0080048817.01 | MsG0180003854.01 | 0.820957 | 5.212599e-53 | 4.184796e-50 |
| MsG0080048817.01 | MsG0180003952.01 | 0.835777 | 1.377515e-56 | 1.701650e-53 |
| MsG0080048817.01 | MsG0180004481.01 | 0.809607 | 1.740887e-50 | 1.026777e-47 |
| MsG0080048817.01 | MsG0180004482.01 | 0.804294 | 2.314732e-49 | 1.189078e-46 |
| MsG0080048817.01 | MsG0180004997.01 | 0.807111 | 5.930007e-50 | 3.274778e-47 |
| MsG0080048817.01 | MsG0180005382.01 | 0.800487 | 1.408271e-48 | 6.565502e-46 |
| MsG0080048817.01 | MsG0180005763.01 | 0.803932 | 2.752888e-49 | 1.401170e-46 |
| MsG0080048817.01 | MsG0180005851.01 | 0.837591 | 4.748817e-57 | 6.197891e-54 |
| MsG0080048817.01 | MsG0180005957.01 | 0.804635 | 1.965425e-49 | 1.018507e-46 |
| MsG0080048817.01 | MsG0180006144.01 | 0.816831 | 4.515341e-52 | 3.234019e-49 |
| MsG0080048817.01 | MsG0180006220.01 | 0.812674 | 3.764645e-51 | 2.408551e-48 |
| MsG0080048817.01 | MsG0280006406.01 | 0.828107 | 1.080462e-54 | 1.063685e-51 |
| MsG0080048817.01 | MsG0280007193.01 | -0.809776 | 1.600494e-50 | 9.482292e-48 |
| MsG0080048817.01 | MsG0280007222.01 | 0.808540 | 2.946268e-50 | 1.689069e-47 |
| MsG0080048817.01 | MsG0280007763.01 | 0.810960 | 8.887342e-51 | 5.432921e-48 |
| MsG0080048817.01 | MsG0280008660.01 | -0.803354 | 3.629260e-49 | 1.819752e-46 |
| MsG0080048817.01 | MsG0280010013.01 | 0.816110 | 6.547767e-52 | 4.598210e-49 |
| MsG0080048817.01 | MsG0280010434.01 | 0.820918 | 5.321975e-53 | 4.267621e-50 |
| MsG0080048817.01 | MsG0280010776.01 | 0.828508 | 8.647175e-55 | 8.612684e-52 |
| MsG0080048817.01 | MsG0280011025.01 | 0.803146 | 4.005770e-49 | 1.997930e-46 |
| MsG0080048817.01 | MsG0280011059.01 | -0.829421 | 5.197544e-55 | 5.316992e-52 |
| MsG0080048817.01 | MsG0280011387.01 | 0.852731 | 3.809375e-61 | 8.035689e-58 |
| MsG0080048817.01 | MsG0380011704.01 | 0.830506 | 2.826814e-55 | 2.983980e-52 |
| MsG0080048817.01 | MsG0380011898.01 | 0.805367 | 1.381452e-49 | 7.295305e-47 |
| MsG0080048817.01 | MsG0380012108.01 | 0.810528 | 1.102433e-50 | 6.660974e-48 |
| MsG0080048817.01 | MsG0380012122.01 | 0.805835 | 1.101937e-49 | 5.889722e-47 |
| MsG0080048817.01 | MsG0380012310.01 | 0.807758 | 4.322649e-50 | 2.427766e-47 |
| MsG0080048817.01 | MsG0380012566.01 | 0.816521 | 5.298814e-52 | 3.763115e-49 |
| MsG0080048817.01 | MsG0380012661.01 | -0.805557 | 1.260307e-49 | 6.687907e-47 |
| MsG0080048817.01 | MsG0380013178.01 | 0.828725 | 7.664442e-55 | 7.681227e-52 |
| MsG0080048817.01 | MsG0380014770.01 | 0.804669 | 1.933246e-49 | 1.002746e-46 |
| MsG0080048817.01 | MsG0380015027.01 | 0.842207 | 2.977079e-58 | 4.480907e-55 |
| MsG0080048817.01 | MsG0380015164.01 | 0.823940 | 1.056932e-53 | 9.230844e-51 |
| MsG0080048817.01 | MsG0380015216.01 | 0.814360 | 1.602811e-51 | 1.073182e-48 |
| MsG0080048817.01 | MsG0380015466.01 | 0.831937 | 1.257138e-55 | 1.384696e-52 |
| MsG0080048817.01 | MsG0380015964.01 | 0.822820 | 1.930241e-53 | 1.633321e-50 |
| MsG0080048817.01 | MsG0380015965.01 | 0.840124 | 1.050072e-57 | 1.481355e-54 |
| MsG0080048817.01 | MsG0380016191.01 | -0.819750 | 9.858524e-53 | 7.652847e-50 |
| MsG0080048817.01 | MsG0380016435.01 | 0.803196 | 3.913216e-49 | 1.954289e-46 |
| MsG0080048817.01 | MsG0380016559.01 | 0.807054 | 6.096583e-50 | 3.361979e-47 |
| MsG0080048817.01 | MsG0380016560.01 | 0.825135 | 5.528424e-54 | 4.996131e-51 |
| MsG0080048817.01 | MsG0380017176.01 | 0.804355 | 2.248238e-49 | 1.156735e-46 |
| MsG0080048817.01 | MsG0380017680.01 | 0.820290 | 7.417332e-53 | 5.844819e-50 |
| MsG0080048817.01 | MsG0380017746.01 | 0.806725 | 7.156709e-50 | 3.913073e-47 |
| MsG0080048817.01 | MsG0380017891.01 | -0.807198 | 5.681537e-50 | 3.144889e-47 |
| MsG0080048817.01 | MsG0480018110.01 | 0.802712 | 4.925888e-49 | 2.429878e-46 |
| MsG0080048817.01 | MsG0480018159.01 | 0.819514 | 1.115805e-52 | 8.604851e-50 |
| MsG0080048817.01 | MsG0480019126.01 | 0.810723 | 1.000216e-50 | 6.075388e-48 |
| MsG0080048817.01 | MsG0480020025.01 | 0.839834 | 1.250350e-57 | 1.747845e-54 |
| MsG0080048817.01 | MsG0480020136.01 | 0.827396 | 1.600828e-54 | 1.543770e-51 |
| MsG0080048817.01 | MsG0480020874.01 | 0.846670 | 1.876764e-59 | 3.255068e-56 |
| MsG0080048817.01 | MsG0480021164.01 | 0.814357 | 1.605443e-51 | 1.074853e-48 |
| MsG0080048817.01 | MsG0480021215.01 | 0.805421 | 1.345910e-49 | 7.117431e-47 |
| MsG0080048817.01 | MsG0480021451.01 | 0.821289 | 4.369508e-53 | 3.540079e-50 |
| MsG0080048817.01 | MsG0480021750.01 | 0.829113 | 6.174333e-55 | 6.259069e-52 |
| MsG0080048817.01 | MsG0480021776.01 | -0.808724 | 2.691276e-50 | 1.550233e-47 |
| MsG0080048817.01 | MsG0480021994.01 | 0.830443 | 2.929162e-55 | 3.086349e-52 |
| MsG0080048817.01 | MsG0480022035.01 | 0.819385 | 1.194291e-52 | 9.176278e-50 |
| MsG0080048817.01 | MsG0480022052.01 | -0.804633 | 1.966979e-49 | 1.019267e-46 |
| MsG0080048817.01 | MsG0480022222.01 | 0.839363 | 1.657116e-57 | 2.283222e-54 |
| MsG0080048817.01 | MsG0480022768.01 | 0.809993 | 1.437602e-50 | 8.565574e-48 |
| MsG0080048817.01 | MsG0480022795.01 | 0.833399 | 5.454226e-56 | 6.273913e-53 |
| MsG0080048817.01 | MsG0480023814.01 | 0.834451 | 2.974294e-56 | 3.531236e-53 |
| MsG0080048817.01 | MsG0580024166.01 | 0.805197 | 1.499516e-49 | 7.884258e-47 |
| MsG0080048817.01 | MsG0580024390.01 | 0.840980 | 6.271656e-58 | 9.084650e-55 |
| MsG0080048817.01 | MsG0580024495.01 | 0.828201 | 1.025714e-54 | 1.012516e-51 |
| MsG0080048817.01 | MsG0580025182.01 | -0.801949 | 7.072731e-49 | 3.421570e-46 |
| MsG0080048817.01 | MsG0580025242.01 | 0.823261 | 1.523560e-53 | 1.305263e-50 |
| MsG0080048817.01 | MsG0580025400.01 | 0.800540 | 1.373601e-48 | 6.412422e-46 |
| MsG0080048817.01 | MsG0580025448.01 | 0.836982 | 6.797895e-57 | 8.708508e-54 |
| MsG0080048817.01 | MsG0580025467.01 | 0.841857 | 3.684536e-58 | 5.485205e-55 |
| MsG0080048817.01 | MsG0580025756.01 | 0.807095 | 5.973983e-50 | 3.297843e-47 |
| MsG0080048817.01 | MsG0580027361.01 | 0.819534 | 1.104022e-52 | 8.519011e-50 |
| MsG0080048817.01 | MsG0580028044.01 | 0.822231 | 2.645762e-53 | 2.201463e-50 |
| MsG0080048817.01 | MsG0580028630.01 | 0.800370 | 1.488116e-48 | 6.917270e-46 |
| MsG0080048817.01 | MsG0580028901.01 | 0.805294 | 1.430877e-49 | 7.542133e-47 |
| MsG0080048817.01 | MsG0580029717.01 | 0.828746 | 7.574389e-55 | 7.595646e-52 |
| MsG0080048817.01 | MsG0580029925.01 | 0.803846 | 2.868094e-49 | 1.456560e-46 |
| MsG0080048817.01 | MsG0680030320.01 | 0.815757 | 7.850334e-52 | 5.460308e-49 |
| MsG0080048817.01 | MsG0680030415.01 | 0.819553 | 1.093450e-52 | 8.441412e-50 |
| MsG0080048817.01 | MsG0680030882.01 | 0.809981 | 1.446013e-50 | 8.612995e-48 |
| MsG0080048817.01 | MsG0680031355.01 | 0.814662 | 1.374110e-51 | 9.276003e-49 |
| MsG0080048817.01 | MsG0680031646.01 | 0.800121 | 1.671859e-48 | 7.722267e-46 |
| MsG0080048817.01 | MsG0680035347.01 | 0.819754 | 9.835038e-53 | 7.635618e-50 |
| MsG0080048817.01 | MsG0680035704.01 | 0.841437 | 4.754026e-58 | 6.985816e-55 |
| MsG0080048817.01 | MsG0780036705.01 | 0.852339 | 4.927180e-61 | 1.026314e-57 |
| MsG0080048817.01 | MsG0780036964.01 | 0.820791 | 5.691209e-53 | 4.547473e-50 |
| MsG0080048817.01 | MsG0780036965.01 | 0.810303 | 1.232780e-50 | 7.404248e-48 |
| MsG0080048817.01 | MsG0780037082.01 | 0.826565 | 2.529720e-54 | 2.380978e-51 |
| MsG0080048817.01 | MsG0780038906.01 | 0.806061 | 9.878588e-50 | 5.310608e-47 |
| MsG0080048817.01 | MsG0780039258.01 | 0.813743 | 2.192882e-51 | 1.443908e-48 |
| MsG0080048817.01 | MsG0780039844.01 | 0.802766 | 4.801801e-49 | 2.371978e-46 |
| MsG0080048817.01 | MsG0780040596.01 | 0.842821 | 2.045497e-58 | 3.138685e-55 |
| MsG0080048817.01 | MsG0780040858.01 | 0.826523 | 2.589762e-54 | 2.434493e-51 |
| MsG0080048817.01 | MsG0780041137.01 | 0.845653 | 3.550269e-59 | 5.958300e-56 |
| MsG0080048817.01 | MsG0780041402.01 | 0.837636 | 4.625661e-57 | 6.045813e-54 |
| MsG0080048817.01 | MsG0780041507.01 | 0.819461 | 1.147328e-52 | 8.835078e-50 |
| MsG0080048817.01 | MsG0880042294.01 | 0.840236 | 9.820548e-58 | 1.390173e-54 |
| MsG0080048817.01 | MsG0880042314.01 | 0.800364 | 1.492277e-48 | 6.935548e-46 |
| MsG0080048817.01 | MsG0880043454.01 | 0.800822 | 1.203589e-48 | 5.658956e-46 |
| MsG0080048817.01 | MsG0880043905.01 | 0.822304 | 2.544456e-53 | 2.121649e-50 |
| MsG0080048817.01 | MsG0880044394.01 | 0.803926 | 2.761221e-49 | 1.405193e-46 |
| MsG0080048817.01 | MsG0880044728.01 | 0.814539 | 1.463425e-51 | 9.846403e-49 |
| MsG0080048817.01 | MsG0880045362.01 | 0.802009 | 6.873736e-49 | 3.330457e-46 |
| MsG0080048817.01 | MsG0880045535.01 | 0.803305 | 3.714409e-49 | 1.860143e-46 |
| MsG0080048817.01 | MsG0880045605.01 | -0.815949 | 7.114147e-52 | 4.973840e-49 |
| MsG0080048817.01 | MsG0880045704.01 | -0.816429 | 5.555276e-52 | 3.935252e-49 |
| MsG0080048817.01 | MsG0880046126.01 | 0.818160 | 2.265273e-52 | 1.682677e-49 |
| MsG0080048817.01 | MsG0880046321.01 | 0.808702 | 2.720655e-50 | 1.566292e-47 |
| MsG0080048817.01 | MsG0880046458.01 | 0.815430 | 9.282332e-52 | 6.398349e-49 |
| MsG0080048817.01 | MsG0880046620.01 | 0.822324 | 2.517720e-53 | 2.100538e-50 |
| MsG0080048817.01 | MsG0880046930.01 | 0.820301 | 7.373272e-53 | 5.811932e-50 |
| MsG0080048817.01 | MsG0880047052.01 | 0.810778 | 9.733277e-51 | 5.920715e-48 |
| MsG0080048817.01 | MsG0880047427.01 | 0.873927 | 1.005963e-67 | 4.442661e-64 |
| MsG0080048817.01 | MsG0880047448.01 | 0.824758 | 6.787470e-54 | 6.068265e-51 |
| MsG0080048817.01 | MsG0880047763.01 | 0.826360 | 2.831723e-54 | 2.649787e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048817.01.T01 | MTR_4g100980 | 65.179 | 224 | 17 | 2 | 4 | 227 | 535 | 697 | 5.26e-91 | 281 |
| MsG0080048817.01.T01 | MTR_4g100980 | 70.874 | 103 | 6 | 1 | 4 | 106 | 535 | 613 | 1.43e-41 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048817.01.T01 | AT4G16570 | 42.079 | 202 | 52 | 4 | 5 | 202 | 567 | 707 | 6.83e-43 | 154 |
Find 44 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATTGTGTATAATGTTTC+AGG | 0.149623 | contig462end:-9696 | MsG0080048817.01.T01:CDS |
| CCTTGGGGTCCTACATTTCT+TGG | 0.167152 | contig462end:+8233 | None:intergenic |
| CTGAAACATTATACACAATA+AGG | 0.241956 | contig462end:+9697 | None:intergenic |
| CAGGTTAAATTCACCAAAAC+TGG | 0.262812 | contig462end:-8697 | MsG0080048817.01.T01:CDS |
| GTAACAATTTGCAGGATCTT+TGG | 0.272959 | contig462end:-9980 | MsG0080048817.01.T01:CDS |
| TTGAACATCTATTGCTCCTT+GGG | 0.288972 | contig462end:+8217 | None:intergenic |
| CAAGGACCCTCTTCCGATTC+AGG | 0.291406 | contig462end:+9876 | None:intergenic |
| CCCATGACATACTCCAGTTT+TGG | 0.353322 | contig462end:+8684 | None:intergenic |
| TATGTCATGGGTTTGTGCTT+TGG | 0.359226 | contig462end:-8672 | MsG0080048817.01.T01:CDS |
| AATTCTGTTGTTATATCAAC+TGG | 0.361465 | contig462end:-8625 | MsG0080048817.01.T01:CDS |
| GGTTTGTGCTTTGGATTGAC+TGG | 0.364347 | contig462end:-8663 | MsG0080048817.01.T01:CDS |
| ATAGAAGGTTTCGACCATTC+TGG | 0.370743 | contig462end:-9933 | MsG0080048817.01.T01:CDS |
| CTTGAACATCTATTGCTCCT+TGG | 0.373149 | contig462end:+8216 | None:intergenic |
| AGATAAAAGATATTCGAAAC+AGG | 0.376944 | contig462end:-8276 | MsG0080048817.01.T01:CDS |
| ATTGATGGGTAACAATTTGC+AGG | 0.384889 | contig462end:-9988 | MsG0080048818.01.T01:intron |
| AGACTGCATGCATGCATGTT+TGG | 0.398301 | contig462end:-8549 | MsG0080048817.01.T01:CDS |
| TGCTGCTTGAATAGGATAGA+AGG | 0.414721 | contig462end:-9948 | MsG0080048817.01.T01:CDS |
| AAAGTCGCTGCTGCTTGAAT+AGG | 0.438562 | contig462end:-9956 | MsG0080048817.01.T01:CDS |
| TTGTGGTCATCTACCTGAAT+CGG | 0.464201 | contig462end:-9889 | MsG0080048817.01.T01:CDS |
| GCATGCATGCAGTCTCCAAC+AGG | 0.476011 | contig462end:+8557 | None:intergenic |
| TGAAACATTATACACAATAA+GGG | 0.476254 | contig462end:+9698 | None:intergenic |
| GCTTTGGATTGACTGGGTGA+TGG | 0.503785 | contig462end:-8656 | MsG0080048817.01.T01:CDS |
| TCTGGTGTAAACGCTACATT+GGG | 0.515145 | contig462end:-9915 | MsG0080048817.01.T01:CDS |
| ACCAAAACTGGAGTATGTCA+TGG | 0.532100 | contig462end:-8685 | MsG0080048817.01.T01:CDS |
| TTCTGGTGTAAACGCTACAT+TGG | 0.542153 | contig462end:-9916 | MsG0080048817.01.T01:CDS |
| CTTGCAGCACCAAGAAATGT+AGG | 0.548557 | contig462end:-8242 | MsG0080048817.01.T01:CDS |
| ATTCACTGGCCAACACCTGT+TGG | 0.550250 | contig462end:-8572 | MsG0080048817.01.T01:CDS |
| GTTGTTATATCAACTGGTCC+AGG | 0.550456 | contig462end:-8619 | MsG0080048817.01.T01:CDS |
| GTTTGTGCTTTGGATTGACT+GGG | 0.561096 | contig462end:-8662 | MsG0080048817.01.T01:CDS |
| TCATCTACCTGAATCGGAAG+AGG | 0.561352 | contig462end:-9883 | MsG0080048817.01.T01:CDS |
| CAAATTCTCCAGACTGCCAA+AGG | 0.565630 | contig462end:+9841 | None:intergenic |
| CCAAAACTGGAGTATGTCAT+GGG | 0.569045 | contig462end:-8684 | MsG0080048817.01.T01:CDS |
| AACGCTACATTGGGAGCTTG+TGG | 0.574477 | contig462end:-9906 | MsG0080048817.01.T01:CDS |
| ATGCAGTCTCCAACAGGTGT+TGG | 0.598211 | contig462end:+8563 | None:intergenic |
| ATGTAGCGTTTACACCAGAA+TGG | 0.602955 | contig462end:+9919 | None:intergenic |
| AAACAAATATGCGAATGTCA+AGG | 0.607755 | contig462end:-9632 | MsG0080048817.01.T01:CDS |
| TGAACATCTATTGCTCCTTG+GGG | 0.613402 | contig462end:+8218 | None:intergenic |
| GATAAAAGATATTCGAAACA+GGG | 0.624766 | contig462end:-8275 | MsG0080048817.01.T01:CDS |
| AAAGGGAATTGAGAGTGACC+TGG | 0.626689 | contig462end:+8601 | None:intergenic |
| CGAATGTCAAGGAAAATCCC+AGG | 0.628107 | contig462end:-9621 | MsG0080048817.01.T01:intron |
| CATCTACCTGAATCGGAAGA+GGG | 0.630533 | contig462end:-9882 | MsG0080048817.01.T01:CDS |
| ATAAAAGATATTCGAAACAG+GGG | 0.633451 | contig462end:-8274 | MsG0080048817.01.T01:CDS |
| CCAAGAAATGTAGGACCCCA+AGG | 0.654023 | contig462end:-8233 | MsG0080048817.01.T01:CDS |
| TGTTCAAGCATGTTGCTATG+CGG | 0.717082 | contig462end:-8201 | MsG0080048817.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATGACATATATTTTATAA+AGG | - | contig462end:9770-9789 | MsG0080048817.01.T01:intron | 10.0% |
| !! | ATAAAATATATGTCATATCT+TGG | + | contig462end:9768-9787 | None:intergenic | 15.0% |
| !! | CACTATTATTATTAAACAAA+TGG | + | contig462end:8379-8398 | None:intergenic | 15.0% |
| !! | TAAAATATATGTCATATCTT+GGG | + | contig462end:9767-9786 | None:intergenic | 15.0% |
| !! | TTCATTACCTTTATAATATA+TGG | - | contig462end:9245-9264 | MsG0080048817.01.T01:intron | 15.0% |
| !! | AATTGAATGATCCTATAATA+TGG | + | contig462end:9308-9327 | None:intergenic | 20.0% |
| !! | TACAGTTCCATATATTATAA+AGG | + | contig462end:9255-9274 | None:intergenic | 20.0% |
| !! | TGAAACATTATACACAATAA+GGG | + | contig462end:8425-8444 | None:intergenic | 20.0% |
| !!! | AAAGGTTAGATTAGTTAATT+AGG | - | contig462end:8771-8790 | MsG0080048817.01.T01:intron | 20.0% |
| !!! | AATAACGTTTTAGAATAGAA+GGG | - | contig462end:8743-8762 | MsG0080048817.01.T01:intron | 20.0% |
| !!! | ATAGGATCATTCAATTTTTT+TGG | - | contig462end:9312-9331 | MsG0080048817.01.T01:intron | 20.0% |
| !!! | TAATAACGTTTTAGAATAGA+AGG | - | contig462end:8742-8761 | MsG0080048817.01.T01:intron | 20.0% |
| ! | AAAAACTTGACCTAACTATT+AGG | - | contig462end:8700-8719 | MsG0080048817.01.T01:intron | 25.0% |
| ! | AATTCTGTTGTTATATCAAC+TGG | - | contig462end:9495-9514 | MsG0080048817.01.T01:intron | 25.0% |
| ! | ACTAAATCAAATCAGTTAGT+AGG | + | contig462end:8650-8669 | None:intergenic | 25.0% |
| ! | AGATAAAAGATATTCGAAAC+AGG | - | contig462end:9844-9863 | MsG0080048817.01.T01:CDS | 25.0% |
| ! | ATAAAAGATATTCGAAACAG+GGG | - | contig462end:9846-9865 | MsG0080048817.01.T01:CDS | 25.0% |
| ! | CTGAAACATTATACACAATA+AGG | + | contig462end:8426-8445 | None:intergenic | 25.0% |
| ! | CTTATTGTGTATAATGTTTC+AGG | - | contig462end:8424-8443 | MsG0080048817.01.T01:intron | 25.0% |
| ! | GATAAAAGATATTCGAAACA+GGG | - | contig462end:9845-9864 | MsG0080048817.01.T01:CDS | 25.0% |
| ! | TTCATAGAATGCCATATTAT+AGG | - | contig462end:9294-9313 | MsG0080048817.01.T01:intron | 25.0% |
| !! | ATAAACCATCATGTAAGTTT+TGG | - | contig462end:8529-8548 | MsG0080048817.01.T01:intron | 25.0% |
| !! | ATTTTCACAGTTATCAAGTA+TGG | + | contig462end:8847-8866 | None:intergenic | 25.0% |
| !!! | ATTTTTTGATCCATCAAATG+GGG | - | contig462end:9955-9974 | MsG0080048817.01.T01:CDS | 25.0% |
| !!! | CATTTTTTGATCCATCAAAT+GGG | - | contig462end:9954-9973 | MsG0080048817.01.T01:CDS | 25.0% |
| !!! | GTTTTATTTCGATTTTCCAA+TGG | + | contig462end:8355-8374 | None:intergenic | 25.0% |
| !!! | TTCCCTTTTAAAAAATTCAC+TGG | - | contig462end:9534-9553 | MsG0080048817.01.T01:intron | 25.0% |
| AAACAAATATGCGAATGTCA+AGG | - | contig462end:8488-8507 | MsG0080048817.01.T01:intron | 30.0% | |
| AAAGAATAAGCAATAGCTCA+TGG | + | contig462end:9809-9828 | None:intergenic | 30.0% | |
| AAATGACATCTGAACAGAAA+AGG | + | contig462end:9136-9155 | None:intergenic | 30.0% | |
| ATTTAGTAGTTAGCTATCTG+AGG | - | contig462end:8663-8682 | MsG0080048817.01.T01:CDS | 30.0% | |
| CTTATAACTGCCTAATAGTT+AGG | + | contig462end:8713-8732 | None:intergenic | 30.0% | |
| TGCTTATAAAAGACTCCATA+GGG | - | contig462end:8876-8895 | MsG0080048817.01.T01:intron | 30.0% | |
| TTGCTTATAAAAGACTCCAT+AGG | - | contig462end:8875-8894 | MsG0080048817.01.T01:intron | 30.0% | |
| TTTAGTAGTTAGCTATCTGA+GGG | - | contig462end:8664-8683 | MsG0080048817.01.T01:CDS | 30.0% | |
| ! | TTATTTCGATTTTCCAATGG+CGG | + | contig462end:8352-8371 | None:intergenic | 30.0% |
| !!! | GCATTTTTTGATCCATCAAA+TGG | - | contig462end:9953-9972 | MsG0080048817.01.T01:CDS | 30.0% |
| !!! | GGCCAGTGAATTTTTTAAAA+GGG | + | contig462end:9539-9558 | None:intergenic | 30.0% |
| !!! | TGGCCAGTGAATTTTTTAAA+AGG | + | contig462end:9540-9559 | None:intergenic | 30.0% |
| AAGAATGGAAGGAATCATTC+AGG | - | contig462end:8943-8962 | MsG0080048817.01.T01:intron | 35.0% | |
| AGAATGGAAGGAATCATTCA+GGG | - | contig462end:8944-8963 | MsG0080048817.01.T01:intron | 35.0% | |
| AGAGCTGTATGAAATCCATA+GGG | - | contig462end:8974-8993 | MsG0080048817.01.T01:intron | 35.0% | |
| ATTACCAGGAGGAATAAGAA+TGG | - | contig462end:8928-8947 | MsG0080048817.01.T01:intron | 35.0% | |
| CAGGTTAAATTCACCAAAAC+TGG | - | contig462end:9423-9442 | MsG0080048817.01.T01:intron | 35.0% | |
| GACAATGCACAGTATTCTTT+AGG | + | contig462end:9398-9417 | None:intergenic | 35.0% | |
| GATGGTTTATCATAGTACCT+GGG | + | contig462end:8519-8538 | None:intergenic | 35.0% | |
| GTAACAATTTGCAGGATCTT+TGG | - | contig462end:8140-8159 | MsG0080048817.01.T01:CDS | 35.0% | |
| GTTTGCAAATGTGCATGTTT+GGG | + | contig462end:9712-9731 | None:intergenic | 35.0% | |
| TGATGGTTTATCATAGTACC+TGG | + | contig462end:8520-8539 | None:intergenic | 35.0% | |
| TGCATCCAAAACTTACATGA+TGG | + | contig462end:8537-8556 | None:intergenic | 35.0% | |
| TTCATTGCATTCGTCAATTC+TGG | - | contig462end:9190-9209 | MsG0080048817.01.T01:intron | 35.0% | |
| TTGAACATCTATTGCTCCTT+GGG | + | contig462end:9906-9925 | None:intergenic | 35.0% | |
| TTGAGAGAGCTGTTTGAAAA+GGG | - | contig462end:9067-9086 | MsG0080048817.01.T01:intron | 35.0% | |
| ! | ACAATATCGGTTAGATTACC+AGG | - | contig462end:8914-8933 | MsG0080048817.01.T01:intron | 35.0% |
| ! | AGGGAAAACTTTTGTCTAAG+AGG | - | contig462end:9086-9105 | MsG0080048817.01.T01:intron | 35.0% |
| ! | TAGGTAGTTTGGGACAATAT+CGG | - | contig462end:8901-8920 | MsG0080048817.01.T01:intron | 35.0% |
| ! | TAGTGAGACTTTTGATGTGA+TGG | - | contig462end:8451-8470 | MsG0080048817.01.T01:intron | 35.0% |
| !! | AGGAGAAAGAACTTTTTCCA+TGG | + | contig462end:9116-9135 | None:intergenic | 35.0% |
| !! | ATTCGTCAATTCTGGTTTGT+TGG | - | contig462end:9198-9217 | MsG0080048817.01.T01:intron | 35.0% |
| !! | GGAGAAAGAACTTTTTCCAT+GGG | + | contig462end:9115-9134 | None:intergenic | 35.0% |
| !!! | ACGTTTTAGAATAGAAGGGA+AGG | - | contig462end:8747-8766 | MsG0080048817.01.T01:intron | 35.0% |
| !!! | AGTTTTTTGCCAACATTGCA+GGG | - | contig462end:9654-9673 | MsG0080048817.01.T01:CDS | 35.0% |
| !!! | ATTTTGAGTTCCCCATTTGA+TGG | + | contig462end:9968-9987 | None:intergenic | 35.0% |
| !!! | TAGTTTTTTGCCAACATTGC+AGG | - | contig462end:9653-9672 | MsG0080048817.01.T01:CDS | 35.0% |
| ACCAAAACTGGAGTATGTCA+TGG | - | contig462end:9435-9454 | MsG0080048817.01.T01:intron | 40.0% | |
| ATAGAAGGTTTCGACCATTC+TGG | - | contig462end:8187-8206 | MsG0080048817.01.T01:CDS | 40.0% | |
| ATGTAGCGTTTACACCAGAA+TGG | + | contig462end:8204-8223 | None:intergenic | 40.0% | |
| CAAAGGAAAAAAGGCAGACA+AGG | + | contig462end:8265-8284 | None:intergenic | 40.0% | |
| CCAAAACTGGAGTATGTCAT+GGG | - | contig462end:9436-9455 | MsG0080048817.01.T01:intron | 40.0% | |
| CGTTTGCAAATGTGCATGTT+TGG | + | contig462end:9713-9732 | None:intergenic | 40.0% | |
| CTTGAACATCTATTGCTCCT+TGG | + | contig462end:9907-9926 | None:intergenic | 40.0% | |
| CTTGAGAGAGCTGTTTGAAA+AGG | - | contig462end:9066-9085 | MsG0080048817.01.T01:intron | 40.0% | |
| GAATGGAAGGAATCATTCAG+GGG | - | contig462end:8945-8964 | MsG0080048817.01.T01:intron | 40.0% | |
| GAGAGCTGTATGAAATCCAT+AGG | - | contig462end:8973-8992 | MsG0080048817.01.T01:intron | 40.0% | |
| GCATTTGCATGATTAGTAGC+AGG | - | contig462end:8554-8573 | MsG0080048817.01.T01:CDS | 40.0% | |
| GTATGAAATCCATAGGGAGT+AGG | - | contig462end:8980-8999 | MsG0080048817.01.T01:intron | 40.0% | |
| GTTGTTATATCAACTGGTCC+AGG | - | contig462end:9501-9520 | MsG0080048817.01.T01:intron | 40.0% | |
| TAAAAGACTCCATAGGGAGT+AGG | - | contig462end:8882-8901 | MsG0080048817.01.T01:intron | 40.0% | |
| TAGAATAGAAGGGAAGGCAA+AGG | - | contig462end:8753-8772 | MsG0080048817.01.T01:intron | 40.0% | |
| TATGTCATGGGTTTGTGCTT+TGG | - | contig462end:9448-9467 | MsG0080048817.01.T01:intron | 40.0% | |
| TCTGGTGTAAACGCTACATT+GGG | - | contig462end:8205-8224 | MsG0080048817.01.T01:CDS | 40.0% | |
| TGAACATCTATTGCTCCTTG+GGG | + | contig462end:9905-9924 | None:intergenic | 40.0% | |
| TGTTCAAGCATGTTGCTATG+CGG | - | contig462end:9919-9938 | MsG0080048817.01.T01:CDS | 40.0% | |
| TTCTGGTGTAAACGCTACAT+TGG | - | contig462end:8204-8223 | MsG0080048817.01.T01:CDS | 40.0% | |
| TTGTGGTCATCTACCTGAAT+CGG | - | contig462end:8231-8250 | MsG0080048817.01.T01:CDS | 40.0% | |
| TTTGTCTAAGAGGAAACCCA+TGG | - | contig462end:9096-9115 | MsG0080048817.01.T01:intron | 40.0% | |
| TTTGTTACCCAGTGTCGTAA+AGG | - | contig462end:8577-8596 | MsG0080048817.01.T01:CDS | 40.0% | |
| ! | ATATCGGTTAGATTACCAGG+AGG | - | contig462end:8917-8936 | MsG0080048817.01.T01:intron | 40.0% |
| ! | GTTTGTGCTTTGGATTGACT+GGG | - | contig462end:9458-9477 | MsG0080048817.01.T01:intron | 40.0% |
| ! | TGCTGCTTGAATAGGATAGA+AGG | - | contig462end:8172-8191 | MsG0080048817.01.T01:CDS | 40.0% |
| !!! | CTTGTCTGCCTTTTTTCCTT+TGG | - | contig462end:8263-8282 | MsG0080048817.01.T01:CDS | 40.0% |
| !!! | GTTTTTTGCCAACATTGCAG+GGG | - | contig462end:9655-9674 | MsG0080048817.01.T01:CDS | 40.0% |
| AAAGGGAATTGAGAGTGACC+TGG | + | contig462end:9522-9541 | None:intergenic | 45.0% | |
| ACAATGTACCCCTGCAATGT+TGG | + | contig462end:9666-9685 | None:intergenic | 45.0% | |
| ACCTTAGTCCTTTACGACAC+TGG | + | contig462end:8588-8607 | None:intergenic | 45.0% | |
| AGACTGCATGCATGCATGTT+TGG | - | contig462end:9571-9590 | MsG0080048817.01.T01:intron | 45.0% | |
| CAAATTCTCCAGACTGCCAA+AGG | + | contig462end:8282-8301 | None:intergenic | 45.0% | |
| CATCTACCTGAATCGGAAGA+GGG | - | contig462end:8238-8257 | MsG0080048817.01.T01:CDS | 45.0% | |
| CCAGACTGCCAAAGGAAAAA+AGG | + | contig462end:8274-8293 | None:intergenic | 45.0% | |
| CCAGGAGGAATAAGAATGGA+AGG | - | contig462end:8932-8951 | MsG0080048817.01.T01:intron | 45.0% | |
| CCATAGGGAGTAGGTAGTTT+GGG | - | contig462end:8891-8910 | MsG0080048817.01.T01:intron | 45.0% | |
| CCTTAGTCCTTTACGACACT+GGG | + | contig462end:8587-8606 | None:intergenic | 45.0% | |
| CCTTCCATTCTTATTCCTCC+TGG | + | contig462end:8935-8954 | None:intergenic | 45.0% | |
| CGAATGTCAAGGAAAATCCC+AGG | - | contig462end:8499-8518 | MsG0080048817.01.T01:intron | 45.0% | |
| CTTGCAGCACCAAGAAATGT+AGG | - | contig462end:9878-9897 | MsG0080048817.01.T01:CDS | 45.0% | |
| TACTGTGCATTGTCTGTTGC+AGG | - | contig462end:9404-9423 | MsG0080048817.01.T01:intron | 45.0% | |
| TCATCTACCTGAATCGGAAG+AGG | - | contig462end:8237-8256 | MsG0080048817.01.T01:CDS | 45.0% | |
| TCCATAGGGAGTAGGTAGTT+TGG | - | contig462end:8890-8909 | MsG0080048817.01.T01:intron | 45.0% | |
| ! | AAAGTCGCTGCTGCTTGAAT+AGG | - | contig462end:8164-8183 | MsG0080048817.01.T01:CDS | 45.0% |
| ! | CCCATGACATACTCCAGTTT+TGG | + | contig462end:9439-9458 | None:intergenic | 45.0% |
| ! | GGTTTGTGCTTTGGATTGAC+TGG | - | contig462end:9457-9476 | MsG0080048817.01.T01:intron | 45.0% |
| ! | TAATCAGCTGTTTCCGCCAT+TGG | - | contig462end:8336-8355 | MsG0080048817.01.T01:intron | 45.0% |
| !! | TATCTGAGGGCATCATTGCA+AGG | - | contig462end:8677-8696 | MsG0080048817.01.T01:CDS | 45.0% |
| !!! | CAAATGTCGTTTTGCTCCAC+AGG | - | contig462end:8610-8629 | MsG0080048817.01.T01:CDS | 45.0% |
| !!! | CCTTTTTTCCTTTGGCAGTC+TGG | - | contig462end:8271-8290 | MsG0080048817.01.T01:CDS | 45.0% |
| AACGCTACATTGGGAGCTTG+TGG | - | contig462end:8214-8233 | MsG0080048817.01.T01:CDS | 50.0% | |
| ATGCAGTCTCCAACAGGTGT+TGG | + | contig462end:9560-9579 | None:intergenic | 50.0% | |
| ATTCACTGGCCAACACCTGT+TGG | - | contig462end:9548-9567 | MsG0080048817.01.T01:intron | 50.0% | |
| CCAAGAAATGTAGGACCCCA+AGG | - | contig462end:9887-9906 | MsG0080048817.01.T01:CDS | 50.0% | |
| CCCAAACTACCTACTCCCTA+TGG | + | contig462end:8894-8913 | None:intergenic | 50.0% | |
| CCCAGTGTCGTAAAGGACTA+AGG | - | contig462end:8584-8603 | MsG0080048817.01.T01:CDS | 50.0% | |
| CCTTGGGGTCCTACATTTCT+TGG | + | contig462end:9890-9909 | None:intergenic | 50.0% | |
| GGCTCAACACAAACAACCTG+TGG | + | contig462end:8629-8648 | None:intergenic | 50.0% | |
| ! | GCTTTGGATTGACTGGGTGA+TGG | - | contig462end:9464-9483 | MsG0080048817.01.T01:intron | 50.0% |
| CAAGGACCCTCTTCCGATTC+AGG | + | contig462end:8247-8266 | None:intergenic | 55.0% | |
| GCATGCATGCAGTCTCCAAC+AGG | + | contig462end:9566-9585 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig462end | gene | 8136 | 10006 | 8136 | ID=MsG0080048817.01;Name=MsG0080048817.01 |
| contig462end | mRNA | 8136 | 10006 | 8136 | ID=MsG0080048817.01.T01;Parent=MsG0080048817.01;Name=MsG0080048817.01.T01;_AED=0.50;_eAED=0.57;_QI=0|0|0|1|0.33|0|4|0|227 |
| contig462end | exon | 9808 | 10006 | 9808 | ID=MsG0080048817.01.T01:exon:5518;Parent=MsG0080048817.01.T01 |
| contig462end | exon | 9622 | 9737 | 9622 | ID=MsG0080048817.01.T01:exon:5517;Parent=MsG0080048817.01.T01 |
| contig462end | exon | 8542 | 8716 | 8542 | ID=MsG0080048817.01.T01:exon:5516;Parent=MsG0080048817.01.T01 |
| contig462end | exon | 8136 | 8329 | 8136 | ID=MsG0080048817.01.T01:exon:5515;Parent=MsG0080048817.01.T01 |
| contig462end | CDS | 9808 | 10006 | 9808 | ID=MsG0080048817.01.T01:cds;Parent=MsG0080048817.01.T01 |
| contig462end | CDS | 9622 | 9737 | 9622 | ID=MsG0080048817.01.T01:cds;Parent=MsG0080048817.01.T01 |
| contig462end | CDS | 8542 | 8716 | 8542 | ID=MsG0080048817.01.T01:cds;Parent=MsG0080048817.01.T01 |
| contig462end | CDS | 8136 | 8329 | 8136 | ID=MsG0080048817.01.T01:cds;Parent=MsG0080048817.01.T01 |
| Gene Sequence |
| Protein sequence |
