AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380012958.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012958.01.T02 MTR_8g056940 78.344 157 5 1 34 161 3 159 6.27e-78 231
MsG0380012958.01.T02 MTR_0186s0030 75.540 139 5 1 34 143 3 141 5.65e-63 190
MsG0380012958.01.T02 MTR_2g070150 56.410 156 39 1 35 161 4 159 3.84e-51 162
MsG0380012958.01.T02 MTR_2g070180 57.051 156 38 1 35 161 4 159 1.66e-50 161
MsG0380012958.01.T02 MTR_2g070060 54.140 157 43 1 34 161 3 159 5.24e-49 157
MsG0380012958.01.T02 MTR_2g070130 53.205 156 44 1 35 161 4 159 5.43e-48 155
MsG0380012958.01.T02 MTR_4g124130 55.414 157 40 2 35 161 4 160 1.04e-47 154
MsG0380012958.01.T02 MTR_3g467430 48.447 161 54 1 30 161 4 164 2.93e-47 153
MsG0380012958.01.T02 MTR_2g070120 53.846 156 43 1 35 161 4 159 8.49e-47 152
MsG0380012958.01.T02 MTR_2g070070 53.503 157 44 1 34 161 3 159 2.18e-46 150
MsG0380012958.01.T02 MTR_3g467420 49.677 155 49 1 36 161 10 164 2.72e-46 150
MsG0380012958.01.T02 MTR_2g070140 55.944 143 34 1 48 161 1 143 1.64e-44 145
MsG0380012958.01.T02 MTR_2g070110 51.282 156 48 2 34 161 3 158 7.77e-43 142
MsG0380012958.01.T02 MTR_2g070210 51.266 158 46 2 35 161 4 161 8.09e-43 142
MsG0380012958.01.T02 MTR_2g070200 51.592 157 46 3 35 161 4 160 3.10e-42 140
MsG0380012958.01.T02 MTR_5g076900 42.138 159 63 2 32 161 3 161 1.17e-32 115
MsG0380012958.01.T02 MTR_4g019780 38.961 154 66 2 33 158 6 159 6.98e-28 103
MsG0380012958.01.T02 MTR_5g037380 43.210 162 56 4 34 159 4 165 3.58e-27 102
MsG0380012958.01.T02 MTR_1g090060 42.568 148 55 3 42 159 10 157 5.30e-27 101
MsG0380012958.01.T02 MTR_3g099757 40.764 157 65 2 31 159 1 157 1.49e-26 100
MsG0380012958.01.T02 MTR_1g090070 39.264 163 68 3 28 159 2 164 2.81e-26 99.8
MsG0380012958.01.T02 MTR_7g065740 42.857 147 53 4 44 160 16 161 6.66e-26 98.6
MsG0380012958.01.T02 MTR_7g065660 42.466 146 54 4 44 160 16 160 7.41e-26 98.6
MsG0380012958.01.T02 MTR_1g090100 43.243 148 54 3 42 159 9 156 1.51e-24 95.1
MsG0380012958.01.T02 MTR_4g059730 41.216 148 57 3 42 159 11 158 1.93e-24 94.7
MsG0380012958.01.T02 MTR_8g087410 38.961 154 66 2 34 159 5 158 2.10e-24 94.7
MsG0380012958.01.T02 MTR_1g090150 40.268 149 56 4 42 159 10 156 3.85e-24 94.0
MsG0380012958.01.T02 MTR_7g065750 38.608 158 66 4 33 160 5 161 9.80e-24 93.2
MsG0380012958.01.T02 MTR_7g065710 41.096 146 56 3 44 160 13 157 1.38e-23 92.4
MsG0380012958.01.T02 MTR_4g019790 38.194 144 59 2 44 158 16 158 1.82e-23 92.4
MsG0380012958.01.T02 MTR_5g040430 34.375 160 71 3 34 159 6 165 2.69e-23 92.0
MsG0380012958.01.T02 MTR_8g087425 36.774 155 70 2 33 159 3 157 5.54e-23 90.9
MsG0380012958.01.T02 MTR_7g065630 38.356 146 60 3 44 160 34 178 9.40e-23 90.9
MsG0380012958.01.T02 MTR_7g065720 39.456 147 58 4 44 160 16 161 2.66e-22 89.4
MsG0380012958.01.T02 MTR_1g090090 41.216 148 57 4 42 159 10 157 3.69e-22 89.0
MsG0380012958.01.T02 MTR_7g065265 38.217 157 67 5 33 160 5 160 5.48e-21 85.9
MsG0380012958.01.T02 MTR_8g061950 35.758 165 70 4 31 159 1 165 1.94e-20 84.7
MsG0380012958.01.T02 MTR_7g065680 39.726 146 58 3 44 160 16 160 3.11e-20 83.6
MsG0380012958.01.T02 MTR_7g065590 34.932 146 65 3 44 160 16 160 5.07e-20 83.2
MsG0380012958.01.T02 MTR_7g065640 58.462 65 27 0 44 108 16 80 6.48e-20 82.4
MsG0380012958.01.T02 MTR_7g065290 37.671 146 61 3 44 160 16 160 1.52e-19 82.0
MsG0380012958.01.T02 MTR_7g065230 38.194 144 59 3 44 158 16 158 1.80e-19 81.6
MsG0380012958.01.T02 MTR_7g065270 35.032 157 72 3 33 160 5 160 3.55e-19 80.9
MsG0380012958.01.T02 MTR_6g080440 37.594 133 55 2 53 157 21 153 4.54e-19 80.9
MsG0380012958.01.T02 MTR_7g065700 38.889 144 58 3 44 158 16 158 8.09e-19 80.1
MsG0380012958.01.T02 MTR_1g115195 36.364 154 63 4 38 158 6 157 1.48e-18 79.3
MsG0380012958.01.T02 MTR_7g065600 36.301 146 63 4 44 160 16 160 5.30e-17 75.1
MsG0380012958.01.T02 MTR_7g065260 50.769 65 32 0 44 108 23 87 3.95e-16 73.2
MsG0380012958.01.T02 MTR_2g072120 81.818 33 6 0 78 110 1 33 1.36e-12 60.1
MsG0380012958.01.T01 MTR_3g074840 91.753 97 8 0 129 225 31 127 3.86e-32 114
MsG0380012958.01.T01 MTR_2g088870 76.623 77 16 1 37 111 285 361 1.75e-30 117
MsG0380012958.01.T01 MTR_2g088870 76.623 77 16 1 37 111 283 359 1.77e-30 117
MsG0380012958.01.T01 MTR_7g076560 82.759 58 10 0 54 111 269 326 4.76e-27 107
MsG0380012958.01.T01 MTR_5g082180 86.364 44 6 0 119 162 126 169 2.47e-17 79.7
MsG0380012958.01.T01 MTR_3g108280 86.364 44 6 0 119 162 126 169 2.57e-17 79.3
MsG0380012958.01.T01 MTR_3g077430 56.140 57 23 1 2 56 118 174 6.23e-13 67.8
MsG0380012958.01.T01 MTR_4g105400 51.786 56 25 1 3 56 11 66 8.01e-11 61.2
MsG0380012958.01.T01 MTR_8g069575 77.419 31 7 0 2 32 64 94 8.25e-11 61.2
MsG0380012958.01.T01 MTR_2g073040 77.419 31 7 0 2 32 50 80 8.63e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012958.01.T02 AT1G78340 53.247 154 43 1 35 159 4 157 4.48e-49 157
MsG0380012958.01.T02 AT1G78380 54.839 155 41 1 35 160 4 158 4.67e-49 157
MsG0380012958.01.T02 AT1G78370 51.634 153 45 2 37 160 6 158 1.39e-48 156
MsG0380012958.01.T02 AT1G17170 54.839 155 40 2 35 160 4 157 4.96e-47 152
MsG0380012958.01.T02 AT1G17180 53.548 155 43 3 35 160 4 158 1.10e-45 149
MsG0380012958.01.T02 AT1G78320 52.866 157 45 2 33 160 2 158 7.20e-45 147
MsG0380012958.01.T02 AT1G78360 51.923 156 45 2 35 160 4 159 1.37e-44 146
MsG0380012958.01.T02 AT1G17190 49.677 155 49 1 35 160 5 159 1.47e-44 146
MsG0380012958.01.T02 AT1G53680 45.283 159 56 3 34 161 6 164 6.68e-39 132
MsG0380012958.01.T02 AT1G78320 53.846 130 58 2 33 160 2 131 2.76e-38 129
MsG0380012958.01.T02 AT3G43800 46.626 163 54 3 31 160 1 163 3.34e-36 125
MsG0380012958.01.T02 AT3G09270 42.675 157 60 3 32 158 3 159 1.70e-28 105
MsG0380012958.01.T02 AT2G29440 43.478 161 60 5 32 161 3 163 9.87e-27 100
MsG0380012958.01.T02 AT1G10360 37.267 161 66 3 34 159 4 164 6.69e-26 98.6
MsG0380012958.01.T02 AT1G74590 52.941 85 40 0 32 116 4 88 7.21e-26 98.6
MsG0380012958.01.T02 AT2G29420 39.355 155 60 4 34 157 8 159 2.11e-25 97.4
MsG0380012958.01.T02 AT2G29450 41.975 162 62 5 32 161 3 164 8.71e-25 95.9
MsG0380012958.01.T02 AT1G10370 37.195 164 68 4 31 159 1 164 4.03e-24 94.0
MsG0380012958.01.T02 AT2G29480 36.646 161 71 3 32 161 4 164 8.48e-24 93.2
MsG0380012958.01.T02 AT1G59700 35.366 164 70 4 32 159 3 166 2.67e-23 92.0
MsG0380012958.01.T02 AT1G59670 37.195 164 67 5 32 159 3 166 7.24e-23 90.9
MsG0380012958.01.T02 AT5G62480 35.366 164 69 3 33 159 6 169 4.13e-22 89.0
MsG0380012958.01.T02 AT2G29490 36.646 161 71 4 32 161 4 164 5.09e-22 88.6
MsG0380012958.01.T02 AT2G29460 35.404 161 73 3 32 161 4 164 6.36e-22 88.2
MsG0380012958.01.T02 AT2G29470 35.185 162 73 4 32 161 4 165 2.94e-20 84.0
MsG0380012958.01.T02 AT1G27140 38.411 151 56 5 46 159 17 167 2.40e-19 82.0
MsG0380012958.01.T02 AT1G69920 37.500 160 60 8 38 159 37 194 4.48e-19 81.3
MsG0380012958.01.T02 AT1G27130 34.177 158 68 5 38 159 9 166 7.14e-19 80.5
MsG0380012958.01.T02 AT1G69930 33.333 156 70 4 38 159 15 170 1.98e-16 73.9
MsG0380012958.01.T02 AT5G62480 29.496 139 81 2 35 159 8 143 1.88e-14 68.2
MsG0380012958.01.T02 AT5G62480 29.496 139 80 3 35 159 8 142 4.10e-13 64.7
MsG0380012958.01.T01 AT5G35730 84.483 58 9 0 54 111 295 352 4.82e-27 107
MsG0380012958.01.T01 AT2G40010 84.091 44 7 0 119 162 126 169 3.35e-16 76.3
MsG0380012958.01.T01 AT3G09200 81.818 44 8 0 119 162 92 135 8.43e-16 75.1
MsG0380012958.01.T01 AT3G11250 81.818 44 8 0 119 162 125 168 1.23e-15 74.7
MsG0380012958.01.T01 AT3G09200 81.818 44 8 0 119 162 125 168 1.24e-15 74.7
MsG0380012958.01.T01 AT2G32295 59.259 54 22 0 58 111 295 348 3.89e-14 71.2
MsG0380012958.01.T01 AT2G32295 59.259 54 22 0 58 111 295 348 3.89e-14 71.2

Find 113 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTATCCCTTTGGCCTTTC+TGG 0.032761 3:-27673804 None:intergenic
CGGCGTTGACAACAAGAATT+TGG 0.128789 3:-27671862 None:intergenic
CTTGGTGACCAACCTTATTT+TGG 0.219499 3:+27673132 MsG0380012958.01.T02:CDS
ATGATGATGGATTCACAAAT+TGG 0.232208 3:-27672508 None:intergenic
ATCTCAGACCTCTTTCTTGC+AGG 0.239289 3:+27674713 MsG0380012958.01.T01:CDS
GCTGCCCCAGTTGCTGCTTC+TGG 0.239470 3:+27675124 MsG0380012958.01.T01:CDS
TGAGATGTATGAGACTATTA+AGG 0.252808 3:-27673192 None:intergenic
GACAGAAAGTAAGAGGATTA+AGG 0.255317 3:+27673768 MsG0380012958.01.T01:intron
GGAGTTGATTGAAGGCTTAA+AGG 0.261757 3:+27673095 MsG0380012958.01.T02:CDS
GTAAGAGGATTAAGGTTTAC+AGG 0.278382 3:+27673776 MsG0380012958.01.T01:CDS
ACTGGAATCTTCTTGTGAAT+TGG 0.280000 3:-27672466 None:intergenic
CAAACTTCTATAGGCCTCTT+TGG 0.287936 3:+27674468 MsG0380012958.01.T01:CDS
TCTGATGAAGACATTGGTTT+TGG 0.305718 3:+27675211 MsG0380012958.01.T01:CDS
AGAAGTTTGTCCACTGTTCA+TGG 0.307882 3:-27674454 None:intergenic
ATACTACAACAATGGATAAA+AGG 0.312993 3:+27673821 MsG0380012958.01.T01:CDS
GCACCACCAGAAGCAGCAAC+TGG 0.316437 3:-27675130 None:intergenic
CTTAGCCAAACACTTCTAAA+AGG 0.336494 3:+27674657 MsG0380012958.01.T01:intron
TTGGCAGCGGCAGCGACAGC+GGG 0.338007 3:-27675154 None:intergenic
CTGAACTTGCTTTATAAGTC+TGG 0.343185 3:-27673257 None:intergenic
GATTCATTTGCAAAAGCATT+TGG 0.343663 3:-27672444 None:intergenic
TTTGAGAGACAGAAAGTAAG+AGG 0.356689 3:+27673761 MsG0380012958.01.T01:intron
GCGATGTTGGAGGAAGGATA+TGG 0.357510 3:+27673037 MsG0380012958.01.T02:CDS
GACAATACCCTTGTTAATCT+TGG 0.363741 3:-27674826 None:intergenic
ATAAGTCTGGTTAGTCTTCA+AGG 0.365189 3:-27673244 None:intergenic
GGTTTATGCCCTTGAAGCTT+AGG 0.380527 3:-27673632 None:intergenic
TTCCTTCTTTGTCTCCTCCT+TGG 0.391699 3:-27675173 None:intergenic
CGCTGTCGCTGCCGCTGCCA+AGG 0.392121 3:+27675156 MsG0380012958.01.T01:CDS
CCATTGTTGTAGTATCCCTT+TGG 0.398339 3:-27673813 None:intergenic
TACCCTTGTTAATCTTGGTT+GGG 0.404379 3:-27674821 None:intergenic
TTTGATCATCCTAAGCTTCA+AGG 0.407770 3:+27673623 MsG0380012958.01.T01:CDS
GATGAATGGCTTAGTATGTT+TGG 0.412400 3:+27672346 MsG0380012958.01.T02:CDS
TTTCCCTTATGGATAAGAAC+TGG 0.413273 3:-27672484 None:intergenic
AAAGAGAGATGAGATTGAAT+TGG 0.418834 3:+27673065 MsG0380012958.01.T02:CDS
GATTCCAGTTCTTATCCATA+AGG 0.427078 3:+27672480 MsG0380012958.01.T02:CDS
AATGTGTCACCACCAAAATA+AGG 0.439985 3:-27673144 None:intergenic
TGAGATTGAATTGGCAAAGA+AGG 0.443100 3:+27673074 MsG0380012958.01.T02:CDS
AAAATGCAGGTTGGCGATGT+TGG 0.453956 3:+27673024 MsG0380012958.01.T02:intron
AACAGTGGACAAACTTCTAT+AGG 0.460566 3:+27674459 MsG0380012958.01.T01:CDS
GGCGTTGACAACAAGAATTT+GGG 0.461734 3:-27671861 None:intergenic
ATTCCAGTTCTTATCCATAA+GGG 0.462545 3:+27672481 MsG0380012958.01.T02:CDS
TGGATAGCATTGGCTGAGAA+AGG 0.467253 3:+27672379 MsG0380012958.01.T02:CDS
GAGATGTATGAGACTATTAA+GGG 0.470012 3:-27673191 None:intergenic
ACTGGGATGTGACTCGAGAT+TGG 0.470574 3:+27674528 MsG0380012958.01.T01:CDS
CTTGGCAGCGGCAGCGACAG+CGG 0.470986 3:-27675155 None:intergenic
CCAAAGGGATACTACAACAA+TGG 0.472782 3:+27673813 MsG0380012958.01.T01:CDS
CTGGGATGTGACTCGAGATT+GGG 0.476699 3:+27674529 MsG0380012958.01.T01:CDS
CGATGTTGGAGGAAGGATAT+GGG 0.477865 3:+27673038 MsG0380012958.01.T02:CDS
ACTCATCGTACTCTTTCTAC+TGG 0.479852 3:+27674510 MsG0380012958.01.T01:CDS
CACCACCAGAAGCAGCAACT+GGG 0.480619 3:-27675129 None:intergenic
GCAAAGAAGGAGTTGATTGA+AGG 0.480756 3:+27673087 MsG0380012958.01.T02:CDS
ATACCCTTGTTAATCTTGGT+TGG 0.481080 3:-27674822 None:intergenic
ACAGCCACAACAAGTTTGCT+TGG 0.482361 3:-27675097 None:intergenic
TATCCCTTTGGCCTTTCTGG+TGG 0.482974 3:-27673801 None:intergenic
GCCCCAGTTGCTGCTTCTGG+TGG 0.488160 3:+27675127 MsG0380012958.01.T01:CDS
AATATACTCAACAATGATGA+TGG 0.489877 3:-27672521 None:intergenic
AGGGATAAAGTATGAGTACA+AGG 0.492003 3:+27672399 MsG0380012958.01.T02:CDS
TAAGTCTGGTTAGTCTTCAA+GGG 0.494109 3:-27673243 None:intergenic
AGTTGATAATACTTGATGAA+TGG 0.497119 3:+27672332 MsG0380012958.01.T02:CDS
CAGCCACAACAAGTTTGCTT+GGG 0.508296 3:-27675096 None:intergenic
CAATCTATCAAATCACCATC+AGG 0.515501 3:-27673575 None:intergenic
TTGATCATCCTAAGCTTCAA+GGG 0.522128 3:+27673624 MsG0380012958.01.T01:CDS
ATAACAAACCTGCAAGAAAG+AGG 0.529276 3:-27674721 None:intergenic
AAGGAATTAGAGAATGTGCT+TGG 0.533543 3:+27673114 MsG0380012958.01.T02:CDS
AGCTTAGGATGATCAAAAGC+TGG 0.537246 3:-27673617 None:intergenic
TTAAGAAAGGAGACAAAGGT+TGG 0.537479 3:+27674874 MsG0380012958.01.T01:CDS
TGCAAGAAAGAGGTCTGAGA+TGG 0.537854 3:-27674711 None:intergenic
GAAGAATCTGATGAAGACAT+TGG 0.542061 3:+27675205 MsG0380012958.01.T01:CDS
GTGGCTAGAATCTGAGACAA+TGG 0.543283 3:-27673220 None:intergenic
GGAGTTCCTCAAGGCAACGC+AGG 0.548252 3:+27674681 MsG0380012958.01.T01:CDS
CTCATCGTACTCTTTCTACT+GGG 0.549454 3:+27674511 MsG0380012958.01.T01:CDS
CTTTGTCTCCTCCTTGGCAG+CGG 0.550708 3:-27675167 None:intergenic
TGTCGAAATCATTACCCTTG+TGG 0.555120 3:+27674845 MsG0380012958.01.T01:CDS
CTTTCTTAACGAGTTCCACA+AGG 0.556237 3:-27674860 None:intergenic
GTTGTCAACGCCGACAATGT+TGG 0.556497 3:+27671872 MsG0380012958.01.T02:CDS
GTTGGAGGAAGGATATGGGC+TGG 0.557573 3:+27673042 MsG0380012958.01.T02:CDS
TGTCGCTGCCGCTGCCAAGG+AGG 0.558767 3:+27675159 MsG0380012958.01.T01:CDS
ATGCAGGTTGGCGATGTTGG+AGG 0.558801 3:+27673027 MsG0380012958.01.T02:intron
GGCAGCGGCAGCGACAGCGG+GGG 0.560167 3:-27675152 None:intergenic
TCAAGCCCTGCGTTGCCTTG+AGG 0.560641 3:-27674687 None:intergenic
GTATGTTTGGTATGAGAGCA+TGG 0.560760 3:+27672359 MsG0380012958.01.T02:CDS
GCTTCAAGGGCATAAACCAC+TGG 0.565485 3:+27673637 MsG0380012958.01.T01:CDS
CATCCCAACCAAGATTAACA+AGG 0.566179 3:+27674818 MsG0380012958.01.T01:CDS
TGACTCGAGATTGGGACCTA+AGG 0.566935 3:+27674537 MsG0380012958.01.T01:CDS
GGATAGCATTGGCTGAGAAA+GGG 0.567915 3:+27672380 MsG0380012958.01.T02:CDS
CTTGTGGAACTCGTTAAGAA+AGG 0.568919 3:+27674861 MsG0380012958.01.T01:CDS
GTGATGAGATCCAACATTGT+CGG 0.570545 3:-27671882 None:intergenic
TGGCAGCGGCAGCGACAGCG+GGG 0.571077 3:-27675153 None:intergenic
AATGTCGGTAACACTGCCAC+TGG 0.571972 3:-27673362 None:intergenic
TCAAATAATCTAATCCAAAG+AGG 0.572935 3:-27673388 None:intergenic
ACCACCAGAAGCAGCAACTG+GGG 0.576891 3:-27675128 None:intergenic
ATTTGTGATACTGTTTGAGA+AGG 0.578036 3:+27673431 MsG0380012958.01.T02:three_prime_UTR
GATCCACCAGAAAGGCCAAA+GGG 0.583977 3:+27673798 MsG0380012958.01.T01:CDS
AGCCAAACACTTCTAAAAGG+TGG 0.589408 3:+27674660 MsG0380012958.01.T01:intron
GCAAGAAAGAGGTCTGAGAT+GGG 0.590223 3:-27674710 None:intergenic
ACACTTGACAGAAGCCAAAG+AGG 0.592727 3:-27674482 None:intergenic
GAGTTCCTCAAGGCAACGCA+GGG 0.593740 3:+27674682 MsG0380012958.01.T01:CDS
TGCCAAGGAGGAGACAAAGA+AGG 0.595388 3:+27675171 MsG0380012958.01.T01:CDS
CTAAAAGGTGGAGTTCCTCA+AGG 0.595487 3:+27674672 MsG0380012958.01.T01:CDS
CATTGTTGAGTATATTGATG+AGG 0.596226 3:+27672528 MsG0380012958.01.T02:CDS
GTTTACAGGATCCACCAGAA+AGG 0.603971 3:+27673790 MsG0380012958.01.T01:CDS
CTCGTTAAGAAAGGAGACAA+AGG 0.606972 3:+27674870 MsG0380012958.01.T01:CDS
GATACTGTTTGAGAAGGTCA+TGG 0.609793 3:+27673437 MsG0380012958.01.T02:three_prime_UTR
TGTCACCACCAAAATAAGGT+TGG 0.621870 3:-27673140 None:intergenic
AAGTCTGGTTAGTCTTCAAG+GGG 0.632401 3:-27673242 None:intergenic
GGACCCAAGCAAACTTGTTG+TGG 0.644745 3:+27675093 MsG0380012958.01.T01:intron
TCTGGTTAGTCTTCAAGGGG+TGG 0.644987 3:-27673239 None:intergenic
ATCATGTTCTCCATGAACAG+TGG 0.650675 3:+27674444 MsG0380012958.01.T01:CDS
GGATCCACCAGAAAGGCCAA+AGG 0.651755 3:+27673797 MsG0380012958.01.T01:CDS
TATGAGAGCATGGATAGCAT+TGG 0.653537 3:+27672369 MsG0380012958.01.T02:CDS
AGGTTGGCGATGTTGGAGGA+AGG 0.664221 3:+27673031 MsG0380012958.01.T02:intron
ATCCCAACCAAGATTAACAA+GGG 0.664581 3:+27674819 MsG0380012958.01.T01:CDS
AATCCAAAGAGGCAAAATGT+CGG 0.668859 3:-27673377 None:intergenic
TTTCTTAACGAGTTCCACAA+GGG 0.676298 3:-27674859 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCAACAAATAAGAAATT+TGG - Chr3:27675062-27675081 None:intergenic 15.0%
!! AATCAACAAATAAGAAATTT+GGG - Chr3:27675061-27675080 None:intergenic 15.0%
!! TAATGAATTAAATAACATGA+TGG + Chr3:27672754-27672773 MsG0380012958.01.T02:intron 15.0%
!! TAATGACATGTAAAATTTAA+AGG - Chr3:27674021-27674040 None:intergenic 15.0%
!!! ATGTTAAAGTTTTCATATAA+TGG + Chr3:27672198-27672217 MsG0380012958.01.T02:intron 15.0%
!!! CATGATAAATCTAAATTTTT+TGG + Chr3:27672077-27672096 MsG0380012958.01.T02:intron 15.0%
!! AAATATGTTAAACCATTGAA+TGG - Chr3:27672674-27672693 None:intergenic 20.0%
!! AACCATTATCATAAATAGAA+AGG - Chr3:27674961-27674980 None:intergenic 20.0%
!! AATATGTTAAACCATTGAAT+GGG - Chr3:27672673-27672692 None:intergenic 20.0%
!! AATGAATTTCGATTGTATAA+TGG + Chr3:27672032-27672051 MsG0380012958.01.T02:intron 20.0%
!! ATGAATTTCGATTGTATAAT+GGG + Chr3:27672033-27672052 MsG0380012958.01.T02:intron 20.0%
!! TTAATGTGTTAAAAAAATGC+AGG + Chr3:27673011-27673030 MsG0380012958.01.T02:intron 20.0%
!!! ACAAAGCTTAATAGTTTTTA+TGG - Chr3:27672231-27672250 None:intergenic 20.0%
!!! ATATTTCTAACAAGTTCTTT+TGG + Chr3:27674358-27674377 MsG0380012958.01.T01:intron 20.0%
!!! TATTTTAGTACTTTTCAACA+AGG - Chr3:27675024-27675043 None:intergenic 20.0%
!!! TTAGTTTGAAATACCATAAA+AGG - Chr3:27674589-27674608 None:intergenic 20.0%
!!! TTATGTTTATTCTCCATTTT+AGG + Chr3:27674788-27674807 MsG0380012958.01.T01:intron 20.0%
! AAAATGTAGATTCTAATGTC+AGG + Chr3:27674621-27674640 MsG0380012958.01.T01:intron 25.0%
! AAGGACGAAATTTATAAATC+AGG + Chr3:27673719-27673738 MsG0380012958.01.T01:intron 25.0%
! AAGTGTAATCTAAAGAGAAA+AGG - Chr3:27671996-27672015 None:intergenic 25.0%
! AATATACTCAACAATGATGA+TGG - Chr3:27672524-27672543 None:intergenic 25.0%
! ACATTCTTCATATTTCGTAA+TGG + Chr3:27672898-27672917 MsG0380012958.01.T02:intron 25.0%
! ACTTGTTCATAAAAAAACGT+TGG + Chr3:27671903-27671922 MsG0380012958.01.T02:intron 25.0%
! ATACTACAACAATGGATAAA+AGG + Chr3:27673821-27673840 MsG0380012958.01.T01:CDS 25.0%
! ATTAGAAGAATGTAACAACA+AGG + Chr3:27674239-27674258 MsG0380012958.01.T01:intron 25.0%
! GCATTAATTTAAACTAGTCA+AGG + Chr3:27673700-27673719 MsG0380012958.01.T01:intron 25.0%
! GTCCTTTCTATTTATGATAA+TGG + Chr3:27674956-27674975 MsG0380012958.01.T01:intron 25.0%
! GTTATTGAAATTATTACCAG+TGG - Chr3:27673656-27673675 None:intergenic 25.0%
! TAGAGAAGACAATAAAAAGA+AGG - Chr3:27672783-27672802 None:intergenic 25.0%
! TCAAATAATCTAATCCAAAG+AGG - Chr3:27673391-27673410 None:intergenic 25.0%
! TTGTCTTCTCTAATATTCAA+TGG + Chr3:27672791-27672810 MsG0380012958.01.T02:intron 25.0%
! TTTATGAAAACACAAGAACA+GGG + Chr3:27674112-27674131 MsG0380012958.01.T01:intron 25.0%
!! AAGCTATAAACTGTTTTCAT+AGG - Chr3:27673504-27673523 None:intergenic 25.0%
!! TATGGGATTGTTTAGATTTT+GGG + Chr3:27672135-27672154 MsG0380012958.01.T02:intron 25.0%
!! TGTTGTTTATTGTTACGTAT+GGG + Chr3:27672118-27672137 MsG0380012958.01.T02:intron 25.0%
!! TTTTATGAAAACACAAGAAC+AGG + Chr3:27674111-27674130 MsG0380012958.01.T01:intron 25.0%
!!! AAAACAGCTCAAGTTTTTTT+GGG - Chr3:27674095-27674114 None:intergenic 25.0%
!!! AACTTAAGCTTTTAGGATAT+TGG - Chr3:27674305-27674324 None:intergenic 25.0%
!!! AGTTGATAATACTTGATGAA+TGG + Chr3:27672332-27672351 MsG0380012958.01.T02:CDS 25.0%
!!! GTATTGTTTTTGCTTTTGAA+TGG + Chr3:27672719-27672738 MsG0380012958.01.T02:intron 25.0%
!!! TAAAACAGCTCAAGTTTTTT+TGG - Chr3:27674096-27674115 None:intergenic 25.0%
!!! TAATGCAAAGTCATTTTGTA+TGG - Chr3:27673686-27673705 None:intergenic 25.0%
!!! TTGTTGATTTTGTTAAATGC+AGG + Chr3:27675072-27675091 MsG0380012958.01.T01:intron 25.0%
AAAGAGAGATGAGATTGAAT+TGG + Chr3:27673065-27673084 MsG0380012958.01.T02:CDS 30.0%
AATTGACCATTTGGTCATAA+AGG + Chr3:27674262-27674281 MsG0380012958.01.T01:intron 30.0%
AGTAAAAACTAGAAGAGAAC+AGG - Chr3:27674058-27674077 None:intergenic 30.0%
ATTCCAGTTCTTATCCATAA+GGG + Chr3:27672481-27672500 MsG0380012958.01.T02:CDS 30.0%
ATTTGTGATACTGTTTGAGA+AGG + Chr3:27673431-27673450 MsG0380012958.01.T02:three_prime_UTR 30.0%
CAACCAAGTCTGTAATAATA+TGG - Chr3:27672952-27672971 None:intergenic 30.0%
CAAGTTCAAAAAGGTCTAAT+AGG - Chr3:27674165-27674184 None:intergenic 30.0%
CATTGTTGAGTATATTGATG+AGG + Chr3:27672528-27672547 MsG0380012958.01.T02:CDS 30.0%
CTTCTCTAATATTCAATGGA+TGG + Chr3:27672795-27672814 MsG0380012958.01.T02:intron 30.0%
GAGATGTATGAGACTATTAA+GGG - Chr3:27673194-27673213 None:intergenic 30.0%
GATCCATATTATTACAGACT+TGG + Chr3:27672946-27672965 MsG0380012958.01.T02:intron 30.0%
GCAAGTTCTATCAAAAGATT+TGG + Chr3:27673939-27673958 MsG0380012958.01.T01:intron 30.0%
GTATATTGATGAGGTTTGAA+AGG + Chr3:27672537-27672556 MsG0380012958.01.T02:intron 30.0%
GTTCTATCAAAAGATTTGGA+AGG + Chr3:27673943-27673962 MsG0380012958.01.T01:intron 30.0%
TGAGATGTATGAGACTATTA+AGG - Chr3:27673195-27673214 None:intergenic 30.0%
TGTGTTAAAAAAATGCAGGT+TGG + Chr3:27673015-27673034 MsG0380012958.01.T02:intron 30.0%
! ATACCATAAAAGGTGTATGT+AGG - Chr3:27674579-27674598 None:intergenic 30.0%
! CTATAAACTGTTTTCATAGG+AGG - Chr3:27673501-27673520 None:intergenic 30.0%
! CTGTTGTTTATTGTTACGTA+TGG + Chr3:27672117-27672136 MsG0380012958.01.T02:intron 30.0%
! GTATGGGATTGTTTAGATTT+TGG + Chr3:27672134-27672153 MsG0380012958.01.T02:intron 30.0%
! TCTTCATATTTCGTAATGGA+TGG + Chr3:27672902-27672921 MsG0380012958.01.T02:intron 30.0%
! TTTCTTTTCTCTATAACCAG+TGG + Chr3:27673346-27673365 MsG0380012958.01.T02:three_prime_UTR 30.0%
!! ATGATGATGGATTCACAAAT+TGG - Chr3:27672511-27672530 None:intergenic 30.0%
!! CTAACAAGTTCTTTTGGTTA+TGG + Chr3:27674364-27674383 MsG0380012958.01.T01:intron 30.0%
!! GATTCATTTGCAAAAGCATT+TGG - Chr3:27672447-27672466 None:intergenic 30.0%
!!! CATGCTTATTGATTTTCTTG+AGG - Chr3:27673314-27673333 None:intergenic 30.0%
AACAGTGGACAAACTTCTAT+AGG + Chr3:27674459-27674478 MsG0380012958.01.T01:CDS 35.0%
AAGGAATTAGAGAATGTGCT+TGG + Chr3:27673114-27673133 MsG0380012958.01.T02:CDS 35.0%
AATCCAAAGAGGCAAAATGT+CGG - Chr3:27673380-27673399 None:intergenic 35.0%
AATGTGTCACCACCAAAATA+AGG - Chr3:27673147-27673166 None:intergenic 35.0%
ACAAACATTCCTCATACCTT+AGG - Chr3:27674556-27674575 None:intergenic 35.0%
ACAACAAGGAATTGACCATT+TGG + Chr3:27674253-27674272 MsG0380012958.01.T01:intron 35.0%
ACGTATCCTTTATGACCAAA+TGG - Chr3:27674271-27674290 None:intergenic 35.0%
ACTGGAATCTTCTTGTGAAT+TGG - Chr3:27672469-27672488 None:intergenic 35.0%
AGAGCAGAAAGAAAAATCAC+TGG - Chr3:27674419-27674438 None:intergenic 35.0%
AGGGATAAAGTATGAGTACA+AGG + Chr3:27672399-27672418 MsG0380012958.01.T02:CDS 35.0%
ATAACAAACCTGCAAGAAAG+AGG - Chr3:27674724-27674743 None:intergenic 35.0%
ATACCCTTGTTAATCTTGGT+TGG - Chr3:27674825-27674844 None:intergenic 35.0%
ATAGTCATATCTCACAAGGA+AGG - Chr3:27672873-27672892 None:intergenic 35.0%
ATCCCAACCAAGATTAACAA+GGG + Chr3:27674819-27674838 MsG0380012958.01.T01:CDS 35.0%
ATGGATAAAAGGTTAGTGAG+AGG + Chr3:27673832-27673851 MsG0380012958.01.T01:intron 35.0%
CAATCTATCAAATCACCATC+AGG - Chr3:27673578-27673597 None:intergenic 35.0%
CTTAGCCAAACACTTCTAAA+AGG + Chr3:27674657-27674676 MsG0380012958.01.T01:intron 35.0%
GAAGAATCTGATGAAGACAT+TGG + Chr3:27675205-27675224 MsG0380012958.01.T01:CDS 35.0%
GAATGGGACACAAAAAACTT+TGG - Chr3:27672657-27672676 None:intergenic 35.0%
GACAATACCCTTGTTAATCT+TGG - Chr3:27674829-27674848 None:intergenic 35.0%
GACAGAAAGTAAGAGGATTA+AGG + Chr3:27673768-27673787 MsG0380012958.01.T01:intron 35.0%
GAGTTGAAACTTAACGAAGA+TGG - Chr3:27674209-27674228 None:intergenic 35.0%
GATGAATGGCTTAGTATGTT+TGG + Chr3:27672346-27672365 MsG0380012958.01.T02:CDS 35.0%
GATTCCAGTTCTTATCCATA+AGG + Chr3:27672480-27672499 MsG0380012958.01.T02:CDS 35.0%
GTAAGAGGATTAAGGTTTAC+AGG + Chr3:27673776-27673795 MsG0380012958.01.T01:CDS 35.0%
GTTCAAAAAGGTCTAATAGG+CGG - Chr3:27674162-27674181 None:intergenic 35.0%
TACCCTTGTTAATCTTGGTT+GGG - Chr3:27674824-27674843 None:intergenic 35.0%
TCCTATAGTCATATCTCACA+AGG - Chr3:27672877-27672896 None:intergenic 35.0%
TCCTTGTGAGATATGACTAT+AGG + Chr3:27672873-27672892 MsG0380012958.01.T02:intron 35.0%
TCTTCTGTTGTTCTTCTGAT+TGG - Chr3:27673906-27673925 None:intergenic 35.0%
TGAGATTGAATTGGCAAAGA+AGG + Chr3:27673074-27673093 MsG0380012958.01.T02:CDS 35.0%
TGATGAGGTTTGAAAGGATA+AGG + Chr3:27672543-27672562 MsG0380012958.01.T02:intron 35.0%
TTAAGAAAGGAGACAAAGGT+TGG + Chr3:27674874-27674893 MsG0380012958.01.T01:CDS 35.0%
TTCAAAAAGGTCTAATAGGC+GGG - Chr3:27674161-27674180 None:intergenic 35.0%
TTCAACTAGTAGTGATCATG+AGG + Chr3:27673989-27674008 MsG0380012958.01.T01:intron 35.0%
TTCGAAAGAACAAGACTTTC+AGG - Chr3:27672273-27672292 None:intergenic 35.0%
TTGATCATCCTAAGCTTCAA+GGG + Chr3:27673624-27673643 MsG0380012958.01.T01:CDS 35.0%
TTTCCCTTATGGATAAGAAC+TGG - Chr3:27672487-27672506 None:intergenic 35.0%
TTTCTTAACGAGTTCCACAA+GGG - Chr3:27674862-27674881 None:intergenic 35.0%
TTTGAGAGACAGAAAGTAAG+AGG + Chr3:27673761-27673780 MsG0380012958.01.T01:intron 35.0%
TTTGATCATCCTAAGCTTCA+AGG + Chr3:27673623-27673642 MsG0380012958.01.T01:CDS 35.0%
! ACCTTTTTGAACTTGAAGCA+TGG + Chr3:27674170-27674189 MsG0380012958.01.T01:intron 35.0%
! AGAAAGCTCAAGCAAGATTT+TGG + Chr3:27672593-27672612 MsG0380012958.01.T02:intron 35.0%
! CCTAAAAGCTTAAGTTGTCA+GGG + Chr3:27674309-27674328 MsG0380012958.01.T01:intron 35.0%
! CTGAACTTGCTTTATAAGTC+TGG - Chr3:27673260-27673279 None:intergenic 35.0%
! GAAAGCTCAAGCAAGATTTT+GGG + Chr3:27672594-27672613 MsG0380012958.01.T02:intron 35.0%
! TCCTAAAAGCTTAAGTTGTC+AGG + Chr3:27674308-27674327 MsG0380012958.01.T01:intron 35.0%
! TGTCCTACATACACCTTTTA+TGG + Chr3:27674573-27674592 MsG0380012958.01.T01:intron 35.0%
!! ATAAGTCTGGTTAGTCTTCA+AGG - Chr3:27673247-27673266 None:intergenic 35.0%
!! TAAGTCTGGTTAGTCTTCAA+GGG - Chr3:27673246-27673265 None:intergenic 35.0%
!!! ACGAGAAGGTAAGTTTTGTT+AGG + Chr3:27672629-27672648 MsG0380012958.01.T02:intron 35.0%
!!! ATTTTGGTGGTGACACATTT+GGG + Chr3:27673148-27673167 MsG0380012958.01.T02:CDS 35.0%
!!! CACAAATTGGTTTTCCCTTA+TGG - Chr3:27672498-27672517 None:intergenic 35.0%
!!! GACATTGGTTTTGGTCTATT+TGG + Chr3:27675220-27675239 MsG0380012958.01.T01:CDS 35.0%
!!! GTTTTTTGTGTCCCATTCAA+TGG + Chr3:27672659-27672678 MsG0380012958.01.T02:intron 35.0%
!!! TATTTTGGTGGTGACACATT+TGG + Chr3:27673147-27673166 MsG0380012958.01.T02:CDS 35.0%
!!! TCTGATGAAGACATTGGTTT+TGG + Chr3:27675211-27675230 MsG0380012958.01.T01:CDS 35.0%
AAGAAAAATCACTGGCACTG+CGG - Chr3:27674411-27674430 None:intergenic 40.0%
ACTCATCGTACTCTTTCTAC+TGG + Chr3:27674510-27674529 MsG0380012958.01.T01:CDS 40.0%
AGAAGTTTGTCCACTGTTCA+TGG - Chr3:27674457-27674476 None:intergenic 40.0%
AGCTTAGGATGATCAAAAGC+TGG - Chr3:27673620-27673639 None:intergenic 40.0%
AGGACCACAAGCATAAGAAA+AGG - Chr3:27674941-27674960 None:intergenic 40.0%
ATCATGTTCTCCATGAACAG+TGG + Chr3:27674444-27674463 MsG0380012958.01.T01:CDS 40.0%
CAAACTTCTATAGGCCTCTT+TGG + Chr3:27674468-27674487 MsG0380012958.01.T01:CDS 40.0%
CATATCTCACAAGGAAGGAA+AGG - Chr3:27672868-27672887 None:intergenic 40.0%
CATCCCAACCAAGATTAACA+AGG + Chr3:27674818-27674837 MsG0380012958.01.T01:CDS 40.0%
CCAAAGGGATACTACAACAA+TGG + Chr3:27673813-27673832 MsG0380012958.01.T01:CDS 40.0%
CCATTGTTGTAGTATCCCTT+TGG - Chr3:27673816-27673835 None:intergenic 40.0%
CTAGTTGAATCTCTCCTTAC+AGG - Chr3:27673978-27673997 None:intergenic 40.0%
CTCATCGTACTCTTTCTACT+GGG + Chr3:27674511-27674530 MsG0380012958.01.T01:CDS 40.0%
CTCGTTAAGAAAGGAGACAA+AGG + Chr3:27674870-27674889 MsG0380012958.01.T01:CDS 40.0%
CTTGTGGAACTCGTTAAGAA+AGG + Chr3:27674861-27674880 MsG0380012958.01.T01:CDS 40.0%
CTTTCTTAACGAGTTCCACA+AGG - Chr3:27674863-27674882 None:intergenic 40.0%
GAAGGAAACCAAAACCTGTA+AGG + Chr3:27673961-27673980 MsG0380012958.01.T01:intron 40.0%
GATACTGTTTGAGAAGGTCA+TGG + Chr3:27673437-27673456 MsG0380012958.01.T02:three_prime_UTR 40.0%
GGAAAACTCACTACATGTGT+CGG - Chr3:27671975-27671994 None:intergenic 40.0%
GGACCACAAGCATAAGAAAA+GGG - Chr3:27674940-27674959 None:intergenic 40.0%
GTATGTTTGGTATGAGAGCA+TGG + Chr3:27672359-27672378 MsG0380012958.01.T02:CDS 40.0%
GTGATGAGATCCAACATTGT+CGG - Chr3:27671885-27671904 None:intergenic 40.0%
TCAAAAAGGTCTAATAGGCG+GGG - Chr3:27674160-27674179 None:intergenic 40.0%
TCTGTGATTGCCTTTGACAA+TGG + Chr3:27672303-27672322 MsG0380012958.01.T02:intron 40.0%
TGCTTTCCAAGTTAAGCATC+AGG + Chr3:27674914-27674933 MsG0380012958.01.T01:intron 40.0%
TGTCACCACCAAAATAAGGT+TGG - Chr3:27673143-27673162 None:intergenic 40.0%
TGTCGAAATCATTACCCTTG+TGG + Chr3:27674845-27674864 MsG0380012958.01.T01:CDS 40.0%
TTAGTGAGAGGTTTCAGTTG+TGG + Chr3:27673844-27673863 MsG0380012958.01.T01:intron 40.0%
! AGCCAAACACTTCTAAAAGG+TGG + Chr3:27674660-27674679 MsG0380012958.01.T01:intron 40.0%
! ATTTTGTTGCAGAGTCCTGA+TGG + Chr3:27673560-27673579 None:intergenic 40.0%
! CCCTGACAACTTAAGCTTTT+AGG - Chr3:27674312-27674331 None:intergenic 40.0%
! GAATCTCTCCTTACAGGTTT+TGG - Chr3:27673972-27673991 None:intergenic 40.0%
! GCAAAGAAGGAGTTGATTGA+AGG + Chr3:27673087-27673106 MsG0380012958.01.T02:CDS 40.0%
! GCCATGCTTCAAGTTCAAAA+AGG - Chr3:27674174-27674193 None:intergenic 40.0%
! GGAGTTGATTGAAGGCTTAA+AGG + Chr3:27673095-27673114 MsG0380012958.01.T02:CDS 40.0%
! TATGAGAGCATGGATAGCAT+TGG + Chr3:27672369-27672388 MsG0380012958.01.T02:CDS 40.0%
! TTACCGACATTTTGCCTCTT+TGG + Chr3:27673374-27673393 MsG0380012958.01.T02:three_prime_UTR 40.0%
! TTTCAGTTGTGGACTGATTC+TGG + Chr3:27673855-27673874 MsG0380012958.01.T01:intron 40.0%
!! AAGTCTGGTTAGTCTTCAAG+GGG - Chr3:27673245-27673264 None:intergenic 40.0%
!! CTTGGTGACCAACCTTATTT+TGG + Chr3:27673132-27673151 MsG0380012958.01.T02:CDS 40.0%
!! GGCGTTGACAACAAGAATTT+GGG - Chr3:27671864-27671883 None:intergenic 40.0%
!!! AAGTTTTTTTGGGTGTGGTG+TGG - Chr3:27674085-27674104 None:intergenic 40.0%
!!! AGCTCAAGTTTTTTTGGGTG+TGG - Chr3:27674090-27674109 None:intergenic 40.0%
!!! CTCCACCTTTTAGAAGTGTT+TGG - Chr3:27674665-27674684 None:intergenic 40.0%
AAAGGGCCTGATGCTTAACT+TGG - Chr3:27674923-27674942 None:intergenic 45.0%
AACTCCTCTGCCATTGTCAA+AGG - Chr3:27672316-27672335 None:intergenic 45.0%
ACACTTGACAGAAGCCAAAG+AGG - Chr3:27674485-27674504 None:intergenic 45.0%
AGATTGGGACCTAAGGTATG+AGG + Chr3:27674544-27674563 MsG0380012958.01.T01:intron 45.0%
AGCTTTCTCGTAAGGATCTG+AGG - Chr3:27672581-27672600 None:intergenic 45.0%
ATCTCAGACCTCTTTCTTGC+AGG + Chr3:27674713-27674732 MsG0380012958.01.T01:CDS 45.0%
ATTGCCTTTGACAATGGCAG+AGG + Chr3:27672309-27672328 MsG0380012958.01.T02:intron 45.0%
CAAAAAGGTCTAATAGGCGG+GGG - Chr3:27674159-27674178 None:intergenic 45.0%
CAACAAGGTCATCTTCAGTG+AGG - Chr3:27675009-27675028 None:intergenic 45.0%
CAGTGAGGTAAAGAACCTCA+GGG - Chr3:27674994-27675013 None:intergenic 45.0%
CGATGTTGGAGGAAGGATAT+GGG + Chr3:27673038-27673057 MsG0380012958.01.T02:CDS 45.0%
CTAAAAGGTGGAGTTCCTCA+AGG + Chr3:27674672-27674691 MsG0380012958.01.T01:CDS 45.0%
CTGATTGGAACAGTTCCTTC+TGG - Chr3:27673891-27673910 None:intergenic 45.0%
CTTGCTTGAGCTTTCTCGTA+AGG - Chr3:27672589-27672608 None:intergenic 45.0%
GCTTTCTCGTAAGGATCTGA+GGG - Chr3:27672580-27672599 None:intergenic 45.0%
GGGATGTTGAGCACCTAAAA+TGG - Chr3:27674804-27674823 None:intergenic 45.0%
GGTTTATGCCCTTGAAGCTT+AGG - Chr3:27673635-27673654 None:intergenic 45.0%
GTTTACAGGATCCACCAGAA+AGG + Chr3:27673790-27673809 MsG0380012958.01.T01:CDS 45.0%
TCAGTGAGGTAAAGAACCTC+AGG - Chr3:27674995-27675014 None:intergenic 45.0%
TCTGGTGAAGAATGTCCAGA+AGG + Chr3:27673873-27673892 MsG0380012958.01.T01:intron 45.0%
TGCAAGAAAGAGGTCTGAGA+TGG - Chr3:27674714-27674733 None:intergenic 45.0%
TGGTTCAATGTTTAGCCCTG+AGG + Chr3:27674976-27674995 MsG0380012958.01.T01:intron 45.0%
TTAGACCCTGACGAATGTTC+TGG - Chr3:27671941-27671960 None:intergenic 45.0%
TTCCTTCTTTGTCTCCTCCT+TGG - Chr3:27675176-27675195 None:intergenic 45.0%
! AAAATGCAGGTTGGCGATGT+TGG + Chr3:27673024-27673043 MsG0380012958.01.T02:intron 45.0%
! AACGAAGATGGACTTACGCA+TGG - Chr3:27674197-27674216 None:intergenic 45.0%
! ACAGCCACAACAAGTTTGCT+TGG - Chr3:27675100-27675119 None:intergenic 45.0%
! ACGAAGATGGACTTACGCAT+GGG - Chr3:27674196-27674215 None:intergenic 45.0%
! AGGCCCTTTTCTTATGCTTG+TGG + Chr3:27674934-27674953 MsG0380012958.01.T01:intron 45.0%
! CAGCCACAACAAGTTTGCTT+GGG - Chr3:27675099-27675118 None:intergenic 45.0%
! GCAAGAAAGAGGTCTGAGAT+GGG - Chr3:27674713-27674732 None:intergenic 45.0%
! GTGGCTAGAATCTGAGACAA+TGG - Chr3:27673223-27673242 None:intergenic 45.0%
! TAGTATCCCTTTGGCCTTTC+TGG - Chr3:27673807-27673826 None:intergenic 45.0%
!! CGGCGTTGACAACAAGAATT+TGG - Chr3:27671865-27671884 None:intergenic 45.0%
!! GGATAGCATTGGCTGAGAAA+GGG + Chr3:27672380-27672399 MsG0380012958.01.T02:CDS 45.0%
!! GGCTGATTTTGTCAACGAGA+AGG + Chr3:27672615-27672634 MsG0380012958.01.T02:intron 45.0%
!! TGGATAGCATTGGCTGAGAA+AGG + Chr3:27672379-27672398 MsG0380012958.01.T02:CDS 45.0%
!!! GGTGACCAACCTTATTTTGG+TGG + Chr3:27673135-27673154 MsG0380012958.01.T02:CDS 45.0%
AATGTCGGTAACACTGCCAC+TGG - Chr3:27673365-27673384 None:intergenic 50.0%
ACTGGGATGTGACTCGAGAT+TGG + Chr3:27674528-27674547 MsG0380012958.01.T01:CDS 50.0%
CACTACATGTGTCGGACTGT+CGG - Chr3:27671967-27671986 None:intergenic 50.0%
CAGCTCCAGAACATTCGTCA+GGG + Chr3:27671933-27671952 MsG0380012958.01.T02:intron 50.0%
CTGGGATGTGACTCGAGATT+GGG + Chr3:27674529-27674548 MsG0380012958.01.T01:CDS 50.0%
GATCCACCAGAAAGGCCAAA+GGG + Chr3:27673798-27673817 MsG0380012958.01.T01:CDS 50.0%
GCGATGTTGGAGGAAGGATA+TGG + Chr3:27673037-27673056 MsG0380012958.01.T02:CDS 50.0%
GTTGTCAACGCCGACAATGT+TGG + Chr3:27671872-27671891 MsG0380012958.01.T02:CDS 50.0%
TCAGCTCCAGAACATTCGTC+AGG + Chr3:27671932-27671951 MsG0380012958.01.T02:intron 50.0%
TGACTCGAGATTGGGACCTA+AGG + Chr3:27674537-27674556 MsG0380012958.01.T01:CDS 50.0%
TGCCAAGGAGGAGACAAAGA+AGG + Chr3:27675171-27675190 MsG0380012958.01.T01:CDS 50.0%
! GCTTCAAGGGCATAAACCAC+TGG + Chr3:27673637-27673656 MsG0380012958.01.T01:CDS 50.0%
! TATCCCTTTGGCCTTTCTGG+TGG - Chr3:27673804-27673823 None:intergenic 50.0%
!! GGACCCAAGCAAACTTGTTG+TGG + Chr3:27675093-27675112 MsG0380012958.01.T01:intron 50.0%
!! TCTGGTTAGTCTTCAAGGGG+TGG - Chr3:27673242-27673261 None:intergenic 50.0%
ACCACCAGAAGCAGCAACTG+GGG - Chr3:27675131-27675150 None:intergenic 55.0%
AGGTTGGCGATGTTGGAGGA+AGG + Chr3:27673031-27673050 MsG0380012958.01.T02:intron 55.0%
CACCACCAGAAGCAGCAACT+GGG - Chr3:27675132-27675151 None:intergenic 55.0%
CTTTGTCTCCTCCTTGGCAG+CGG - Chr3:27675170-27675189 None:intergenic 55.0%
GAGTTCCTCAAGGCAACGCA+GGG + Chr3:27674682-27674701 MsG0380012958.01.T01:CDS 55.0%
GGATCCACCAGAAAGGCCAA+AGG + Chr3:27673797-27673816 MsG0380012958.01.T01:CDS 55.0%
GTTGGAGGAAGGATATGGGC+TGG + Chr3:27673042-27673061 MsG0380012958.01.T02:CDS 55.0%
! ATGCAGGTTGGCGATGTTGG+AGG + Chr3:27673027-27673046 MsG0380012958.01.T02:intron 55.0%
GCACCACCAGAAGCAGCAAC+TGG - Chr3:27675133-27675152 None:intergenic 60.0%
GGAGTTCCTCAAGGCAACGC+AGG + Chr3:27674681-27674700 MsG0380012958.01.T01:CDS 60.0%
TCAAGCCCTGCGTTGCCTTG+AGG - Chr3:27674690-27674709 None:intergenic 60.0%
! GCCCCAGTTGCTGCTTCTGG+TGG + Chr3:27675127-27675146 MsG0380012958.01.T01:CDS 65.0%
! GCTGCCCCAGTTGCTGCTTC+TGG + Chr3:27675124-27675143 MsG0380012958.01.T01:CDS 65.0%
CTTGGCAGCGGCAGCGACAG+CGG - Chr3:27675158-27675177 None:intergenic 70.0%
TGTCGCTGCCGCTGCCAAGG+AGG + Chr3:27675159-27675178 MsG0380012958.01.T01:CDS 70.0%
TTGGCAGCGGCAGCGACAGC+GGG - Chr3:27675157-27675176 None:intergenic 70.0%
CGCTGTCGCTGCCGCTGCCA+AGG + Chr3:27675156-27675175 MsG0380012958.01.T01:CDS 75.0%
TGGCAGCGGCAGCGACAGCG+GGG - Chr3:27675156-27675175 None:intergenic 75.0%
! GGCAGCGGCAGCGACAGCGG+GGG - Chr3:27675155-27675174 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr3 gene 27671821 27675252 27671821 ID=MsG0380012958.01;Name=MsG0380012958.01
Chr3 mRNA 27673563 27675252 27673563 ID=MsG0380012958.01.T01;Parent=MsG0380012958.01;Name=MsG0380012958.01.T01;_AED=0.55;_eAED=0.67;_QI=0|0|0|0.83|1|1|6|0|225
Chr3 exon 27673563 27673658 27673563 ID=MsG0380012958.01.T01:exon:7532;Parent=MsG0380012958.01.T01
Chr3 exon 27673773 27673842 27673773 ID=MsG0380012958.01.T01:exon:7531;Parent=MsG0380012958.01.T01
Chr3 exon 27674393 27674558 27674393 ID=MsG0380012958.01.T01:exon:7530;Parent=MsG0380012958.01.T01
Chr3 exon 27674662 27674734 27674662 ID=MsG0380012958.01.T01:exon:7529;Parent=MsG0380012958.01.T01
Chr3 exon 27674810 27674923 27674810 ID=MsG0380012958.01.T01:exon:7528;Parent=MsG0380012958.01.T01
Chr3 exon 27675094 27675252 27675094 ID=MsG0380012958.01.T01:exon:7527;Parent=MsG0380012958.01.T01
Chr3 CDS 27673563 27673658 27673563 ID=MsG0380012958.01.T01:cds;Parent=MsG0380012958.01.T01
Chr3 CDS 27673773 27673842 27673773 ID=MsG0380012958.01.T01:cds;Parent=MsG0380012958.01.T01
Chr3 CDS 27674393 27674558 27674393 ID=MsG0380012958.01.T01:cds;Parent=MsG0380012958.01.T01
Chr3 CDS 27674662 27674734 27674662 ID=MsG0380012958.01.T01:cds;Parent=MsG0380012958.01.T01
Chr3 CDS 27674810 27674923 27674810 ID=MsG0380012958.01.T01:cds;Parent=MsG0380012958.01.T01
Chr3 CDS 27675094 27675252 27675094 ID=MsG0380012958.01.T01:cds;Parent=MsG0380012958.01.T01
Chr3 mRNA 27671821 27673564 27671821 ID=MsG0380012958.01.T02;Parent=MsG0380012958.01;Name=MsG0380012958.01.T02;_AED=0.34;_eAED=0.34;_QI=0|0|0.33|1|0.5|0.33|3|367|161
Chr3 exon 27673033 27673564 27673033 ID=MsG0380012958.01.T02:exon:7535;Parent=MsG0380012958.01.T02
Chr3 exon 27672329 27672549 27672329 ID=MsG0380012958.01.T02:exon:7534;Parent=MsG0380012958.01.T02
Chr3 exon 27671821 27671920 27671821 ID=MsG0380012958.01.T02:exon:7533;Parent=MsG0380012958.01.T02
Chr3 CDS 27671821 27671920 27671821 ID=MsG0380012958.01.T02:cds;Parent=MsG0380012958.01.T02
Chr3 CDS 27672329 27672549 27672329 ID=MsG0380012958.01.T02:cds;Parent=MsG0380012958.01.T02
Chr3 CDS 27673033 27673197 27673033 ID=MsG0380012958.01.T02:cds;Parent=MsG0380012958.01.T02
Chr3 three_prime_UTR 27673198 27673564 27673198 ID=MsG0380012958.01.T02:three_prime_utr;Parent=MsG0380012958.01.T02
Gene Sequence

>MsG0380012958.01.T02

ATGATGAAGATGAATACACGCAAGCTTATCGATGAATACACCCAAATTCTTGTTGTCAACGCCGACAATGTTGGATCTCATCACTTGTTCATAAAAAAACAGGAGTTGATAATACTTGATGAATGGCTTAGTATGTTTGGTATGAGAGCATGGATAGCATTGGCTGAGAAAGGGATAAAGTATGAGTACAAGGAAGAAGATCTTGAGAACAAGAGCCAAATGCTTTTGCAAATGAATCCAATTCACAAGAAGATTCCAGTTCTTATCCATAAGGGAAAACCAATTTGTGAATCCATCATCATTGTTGAGTATATTGATGAGGTTGGCGATGTTGGAGGAAGGATATGGGCTGGAAAGAGAGATGAGATTGAATTGGCAAAGAAGGAGTTGATTGAAGGCTTAAAGGAATTAGAGAATGTGCTTGGTGACCAACCTTATTTTGGTGGTGACACATTTGGGTTTGTTGACATTGCTTTGATCCCTTAA

>MsG0380012958.01.T01

TTGTTGCAGAGTCCTGATGGTGATTTGATAGATTGTGTTTTATCTCATCAACAACCAGCTTTTGATCATCCTAAGCTTCAAGGGCATAAACCACTGAAAGTAAGAGGATTAAGGTTTACAGGATCCACCAGAAAGGCCAAAGGGATACTACAACAATGGATAAAAGCATTAAAATACTCAACCGCAGTGCCAGTGATTTTTCTTTCTGCTCTCAAATATCATGTTCTCCATGAACAGTGGACAAACTTCTATAGGCCTCTTTGGCTTCTGTCAAGTGTTGTGAACTCATCGTACTCTTTCTACTGGGATGTGACTCGAGATTGGGACCTAAGCCAAACACTTCTAAAAGGTGGAGTTCCTCAAGGCAACGCAGGGCTTGACCCATCTCAGACCTCTTTCTTGCAGGTGCTCAACATCCCAACCAAGATTAACAAGGGTATTGTCGAAATCATTACCCTTGTGGAACTCGTTAAGAAAGGAGACAAAGGTTGGATCTTTCGAAGCTGCATTGCTTTCCAAGACCCAAGCAAACTTGTTGTGGCTGTTGTTGCTGCCCCAGTTGCTGCTTCTGGTGGTGCCCCCGCTGTCGCTGCCGCTGCCAAGGAGGAGACAAAGAAGGAAGAACTTGAAGAAGAATCTGATGAAGACATTGGTTTTGGTCTATTTGGTGATGATTAG
Protein sequence

>MsG0380012958.01.T02

MMKMNTRKLIDEYTQILVVNADNVGSHHLFIKKQELIILDEWLSMFGMRAWIALAEKGIKYEYKEEDLENKSQMLLQMNPIHKKIPVLIHKGKPICESIIIVEYIDEVGDVGGRIWAGKRDEIELAKKELIEGLKELENVLGDQPYFGGDTFGFVDIALIP*

>MsG0380012958.01.T01

LLQSPDGDLIDCVLSHQQPAFDHPKLQGHKPLKVRGLRFTGSTRKAKGILQQWIKALKYSTAVPVIFLSALKYHVLHEQWTNFYRPLWLLSSVVNSSYSFYWDVTRDWDLSQTLLKGGVPQGNAGLDPSQTSFLQVLNIPTKINKGIVEIITLVELVKKGDKGWIFRSCIAFQDPSKLVVAVVAAPVAASGGAPAVAAAAKEETKKEELEEESDEDIGFGLFGDD*