AlfalfaGEDB | MsG0380013069.01

M. sativa cultivar ZhongmuNo.1 / MsG0380013069.01

KEGG: K08238
GO: GO:0016021 GO:0016757
PFAM: PF05637

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013069.01.T01	XP_013459411.1	98.013	453	3	2	1	447	1	453	0	917

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013069.01.T01	Q9LF80	76.149	457	99	4	1	447	1	457	0	737

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013069.01.T01	A0A072UV09	98.013	453	3	2	1	447	1	453	0.0	917

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048790.01	MsG0380013069.01	0.820822	5.598014e-53	4.476959e-50
MsG0280006304.01	MsG0380013069.01	0.813099	3.037963e-51	1.965546e-48
MsG0280008523.01	MsG0380013069.01	0.800342	1.507521e-48	7.002531e-46
MsG0280008574.01	MsG0380013069.01	0.808134	3.594886e-50	2.039114e-47
MsG0380013069.01	MsG0380015495.01	0.845797	3.245342e-59	5.472070e-56
MsG0380013069.01	MsG0380016386.01	0.807172	5.754969e-50	3.183330e-47
MsG0380013069.01	MsG0380016871.01	0.800752	1.243505e-48	5.836318e-46
MsG0380013069.01	MsG0380016927.01	0.864207	1.435934e-64	4.471729e-61
MsG0380013069.01	MsG0380017190.01	0.823356	1.447493e-53	1.243348e-50
MsG0380013069.01	MsG0380017643.01	0.806180	9.324340e-50	5.027970e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013069.01.T01	MTR_3g037340	98.013	453	3	2	1	447	1	453	0.0	917
MsG0380013069.01.T01	MTR_4g108940	82.743	452	69	5	1	447	1	448	0.0	761
MsG0380013069.01.T01	MTR_7g108675	56.195	452	158	6	33	444	10	461	0.0	533
MsG0380013069.01.T01	MTR_4g119880	57.541	431	155	5	33	435	10	440	0.0	525
MsG0380013069.01.T01	MTR_8g058553	57.531	405	132	6	33	397	10	414	2.13e-171	492
MsG0380013069.01.T01	MTR_4g097240	44.086	372	157	8	94	429	75	431	1.55e-104	318
MsG0380013069.01.T01	MTR_5g015260	38.269	439	219	11	15	411	3	431	1.20e-100	308
MsG0380013069.01.T01	MTR_4g097230	43.391	348	154	9	110	419	73	415	7.56e-93	287
MsG0380013069.01.T01	MTR_4g108950	61.417	127	5	1	280	406	1	83	5.08e-44	149

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013069.01.T01	AT5G07720	76.149	457	99	4	1	447	1	457	0.0	737
MsG0380013069.01.T01	AT1G74380	76.856	458	94	6	1	447	1	457	0.0	712
MsG0380013069.01.T01	AT1G18690	63.581	497	109	7	18	442	15	511	0.0	618
MsG0380013069.01.T01	AT1G18690	63.581	497	109	7	18	442	15	511	0.0	618
MsG0380013069.01.T01	AT1G18690	63.581	497	109	7	18	442	15	511	0.0	618
MsG0380013069.01.T01	AT1G18690	63.581	497	109	7	18	442	15	511	0.0	618
MsG0380013069.01.T01	AT3G62720	57.110	436	154	6	33	435	10	445	0.0	518
MsG0380013069.01.T01	AT3G62720	57.110	436	154	6	33	435	10	445	0.0	518
MsG0380013069.01.T01	AT4G02500	57.437	437	152	6	33	435	10	446	2.70e-179	509
MsG0380013069.01.T01	AT4G37690	40.698	344	157	6	110	411	76	414	1.62e-90	281

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Find 129 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATAATGATCACCAAT+AGG	0.391177	3:+29872376	None:intergenic
AAACCGTGTGATAATCCTAT+TGG	0.442105	3:-29872391	MsG0380013069.01.T01:CDS
AACATGAGCCTTCGAATCAT+GGG	0.527557	3:+29870900	None:intergenic
AACTCTACGGGTTTAGGCAC+CGG	0.460664	3:-29870287	MsG0380013069.01.T01:CDS
AACTGGTCTACAAACTCTAA+AGG	0.539086	3:+29870216	None:intergenic
AAGAGAACAACAAGCACAGG+AGG	0.624084	3:-29872820	MsG0380013069.01.T01:CDS
AAGCCCTCTCCATGCTACTA+AGG	0.496820	3:+29870337	None:intergenic
AAGGCAACATGCAGGCACTG+TGG	0.731966	3:-29870184	MsG0380013069.01.T01:CDS
AATCAAGTGCTAAAACTCTA+CGG	0.496026	3:-29870300	MsG0380013069.01.T01:CDS
AATCAGATCGGATCTCAGCG+AGG	0.690802	3:+29872593	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAAGCCTAATCCAAACA+GGG	-	Chr3:29871054-29871073	MsG0380013069.01.T01:intron	30.0%
AATCAAGTGCTAAAACTCTA+CGG	-	Chr3:29872717-29872736	MsG0380013069.01.T01:CDS	30.0%
ATAAAAGAGCAGAGTAAAGA+TGG	+	Chr3:29871801-29871820	None:intergenic	30.0%
ATTTGCATATAGTATGTGGT+TGG	-	Chr3:29871419-29871438	MsG0380013069.01.T01:intron	30.0%
CAAATAAGTTTCTTCACTTC+AGG	+	Chr3:29871923-29871942	None:intergenic	30.0%
CATTGAAATTGTGTACAACA+TGG	-	Chr3:29872053-29872072	MsG0380013069.01.T01:intron	30.0%
CTTGACAAATAATGTGTGTT+TGG	-	Chr3:29871383-29871402	MsG0380013069.01.T01:intron	30.0%
CTTTCTATTTGCATGGTTAT+TGG	-	Chr3:29872520-29872539	MsG0380013069.01.T01:CDS	30.0%
GAGAATTCTTTCTATTTGCA+TGG	-	Chr3:29872513-29872532	MsG0380013069.01.T01:CDS	30.0%
TAAATAAGCCTAATCCAAAC+AGG	-	Chr3:29871053-29871072	MsG0380013069.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	29870170	29872869	29870170	ID=MsG0380013069.01;Name=MsG0380013069.01
Chr3	mRNA	29870170	29872869	29870170	ID=MsG0380013069.01.T01;Parent=MsG0380013069.01;Name=MsG0380013069.01.T01;_AED=0.37;_eAED=0.37;_QI=0\|0\|0\|1\|1\|1\|2\|0\|447
Chr3	exon	29872352	29872869	29872352	ID=MsG0380013069.01.T01:exon:6849;Parent=MsG0380013069.01.T01
Chr3	exon	29870170	29870995	29870170	ID=MsG0380013069.01.T01:exon:6850;Parent=MsG0380013069.01.T01
Chr3	CDS	29872352	29872869	29872352	ID=MsG0380013069.01.T01:cds;Parent=MsG0380013069.01.T01
Chr3	CDS	29870170	29870995	29870170	ID=MsG0380013069.01.T01:cds;Parent=MsG0380013069.01.T01

Gene Sequence

>MsG0380013069.01.T01

ATGGGACAAGAAAACAACTTAACACAAAAGAGAACAACAAGCACAGGAGGATTACCAACAACAACAACAACAACCTCACGTAACCGTACACTGCCACGTGGACGTCAGATCCAAAAAACATTCAACAACATAAAGATCACAATCCTCTGCGGTTTCGTAACAATCCTCGTCCTACGTGGCACAATCGGCGTTAACCTCGGCACATCACAGAACGATGCGGTTAACGCCGCTGTTATCGAGGAAACTAACCGTATCCTCGCTGAGATCCGATCTGATTCCGATCCATCTGATCGGAATCAGACCGAAACTTTTATGAGTTTGAATGAAACTTATGCTCTTGGTCCTAAGATCCTTAATTGGGATACTGAGAGAACAAGTTGGTTAGATAAGAACCGTGAATATCCTAATTTTGTTAAGGGGAAACCCAGAATTTTGCTTCTTACTGGTTCGCCTCCGAAACCGTGTGATAATCCTATTGGTGATCATTATCTTTTGAAATCTATCAAGAATAAGATTGTATTGCATGGCATTGAAATTGTGTACAACATGGCTCACTTGGACATGGAGCTTGCAGGTTACTGGGCCAAATTGCCCATGATTCGAAGGCTCATGTTATCACACCCTGAAGTGGAGTGGATTTGGTGGATGGACAGTGATGCATTCTTCACTGACATGGTGTTTGAGCTTCCCATGAGTAAATATAAAGAGTATAATATGGTTATTCATGGGTATCCTGATTTGTTGTTCGAGCAGAATTCTTGGATCGCAATCAACACAGGGAGCTTTTTGTTTCGCAATTGCCAGTGGTCGTTGGATTTGCTTGATGCTTGGGCCCCCATGGGTCCGAAAGGCCCAATTCGAGAGGAGGCTGGGAAGATTTTGACGGCAAATCTCAAAGGAAGGCCAGCGTTCGAGGCTGATGATCAATCGGCGTTGATATATTTATTGCTGTCAAAGAAGGACAAATGGATGGAGAAGGTATTTCTTGAGAATTCTTTCTATTTGCATGGTTATTGGGCTGGGTTGGTTGATCGGTATGAAGAGATGATGGAGAAGTATCATCCGGGGTTAGGGGATGAGAGGTGGCCGTTTGTGACACATTTTGTGGGGTGTAAGCCTTGTGGGAGTTATGGAGATTATCCAGTAGAGAGATGCCTTAGTAGCATGGAGAGGGCTTTCAATTTTGCAGATAATCAAGTGCTAAAACTCTACGGGTTTAGGCACCGGGGATTGTTAAGTCCTAAAATCAAGCGGATCAGGAACGAGACGATTACTCCTTTAGAGTTTGTAGACCAGTTTGATATACGAAGGCAACATGCAGGCACTGTGGAACCAAAAAATTAG

Protein sequence

>MsG0380013069.01.T01

MGQENNLTQKRTTSTGGLPTTTTTTSRNRTLPRGRQIQKTFNNIKITILCGFVTILVLRGTIGVNLGTSQNDAVNAAVIEETNRILAEIRSDSDPSDRNQTETFMSLNETYALGPKILNWDTERTSWLDKNREYPNFVKGKPRILLLTGSPPKPCDNPIGDHYLLKSIKNKIVLHGIEIVYNMAHLDMELAGYWAKLPMIRRLMLSHPEVEWIWWMDSDAFFTDMVFELPMSKYKEYNMVIHGYPDLLFEQNSWIAINTGSFLFRNCQWSLDLLDAWAPMGPKGPIREEAGKILTANLKGRPAFEADDQSALIYLLLSKKDKWMEKVFLENSFYLHGYWAGLVDRYEEMMEKYHPGLGDERWPFVTHFVGCKPCGSYGDYPVERCLSSMERAFNFADNQVLKLYGFRHRGLLSPKIKRIRNETITPLEFVDQFDIRRQHAGTVEPKN*