AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013069.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013069.01.T01 MTR_3g037340 98.013 453 3 2 1 447 1 453 0.0 917
MsG0380013069.01.T01 MTR_4g108940 82.743 452 69 5 1 447 1 448 0.0 761
MsG0380013069.01.T01 MTR_7g108675 56.195 452 158 6 33 444 10 461 0.0 533
MsG0380013069.01.T01 MTR_4g119880 57.541 431 155 5 33 435 10 440 0.0 525
MsG0380013069.01.T01 MTR_8g058553 57.531 405 132 6 33 397 10 414 2.13e-171 492
MsG0380013069.01.T01 MTR_4g097240 44.086 372 157 8 94 429 75 431 1.55e-104 318
MsG0380013069.01.T01 MTR_5g015260 38.269 439 219 11 15 411 3 431 1.20e-100 308
MsG0380013069.01.T01 MTR_4g097230 43.391 348 154 9 110 419 73 415 7.56e-93 287
MsG0380013069.01.T01 MTR_4g108950 61.417 127 5 1 280 406 1 83 5.08e-44 149
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013069.01.T01 AT5G07720 76.149 457 99 4 1 447 1 457 0.0 737
MsG0380013069.01.T01 AT1G74380 76.856 458 94 6 1 447 1 457 0.0 712
MsG0380013069.01.T01 AT1G18690 63.581 497 109 7 18 442 15 511 0.0 618
MsG0380013069.01.T01 AT1G18690 63.581 497 109 7 18 442 15 511 0.0 618
MsG0380013069.01.T01 AT1G18690 63.581 497 109 7 18 442 15 511 0.0 618
MsG0380013069.01.T01 AT1G18690 63.581 497 109 7 18 442 15 511 0.0 618
MsG0380013069.01.T01 AT3G62720 57.110 436 154 6 33 435 10 445 0.0 518
MsG0380013069.01.T01 AT3G62720 57.110 436 154 6 33 435 10 445 0.0 518
MsG0380013069.01.T01 AT4G02500 57.437 437 152 6 33 435 10 446 2.70e-179 509
MsG0380013069.01.T01 AT4G37690 40.698 344 157 6 110 411 76 414 1.62e-90 281
MsG0380013069.01.T01 AT2G22900 40.374 374 173 9 80 411 66 431 1.96e-89 279
MsG0380013069.01.T01 AT4G38310 42.308 104 52 4 110 208 17 117 3.24e-19 83.6

Find 129 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTTCCCCTTAACAAAATT+AGG 0.210983 3:+29872445 None:intergenic
CTTTCTATTTGCATGGTTAT+TGG 0.211134 3:-29870497 MsG0380013069.01.T01:CDS
ACATGGAGCTTGCAGGTTAC+TGG 0.215014 3:-29870932 MsG0380013069.01.T01:CDS
TTTCTATTTGCATGGTTATT+GGG 0.219207 3:-29870496 MsG0380013069.01.T01:CDS
CCTTCGAATCATGGGCAATT+TGG 0.225308 3:+29870908 None:intergenic
TTCTCTCAGTATCCCAATTA+AGG 0.247028 3:+29872497 None:intergenic
TTGGTCCTAAGATCCTTAAT+TGG 0.264667 3:-29872510 MsG0380013069.01.T01:CDS
ACCAGTAAGAAGCAAAATTC+TGG 0.285328 3:+29872423 None:intergenic
CACCAAATCCACTCCACTTC+AGG 0.295318 3:+29870870 None:intergenic
TGTTGTTCGAGCAGAATTCT+TGG 0.311777 3:-29870752 MsG0380013069.01.T01:CDS
CGTTGGATTTGCTTGATGCT+TGG 0.318309 3:-29870683 MsG0380013069.01.T01:CDS
TTCCCAGCCTCCTCTCGAAT+TGG 0.318671 3:+29870639 None:intergenic
GAGAAGTATCATCCGGGGTT+AGG 0.324016 3:-29870441 MsG0380013069.01.T01:CDS
GTATCCCAATTAAGGATCTT+AGG 0.329038 3:+29872505 None:intergenic
TCCTCTCGAATTGGGCCTTT+CGG 0.333238 3:+29870648 None:intergenic
TATTTGCATGGTTATTGGGC+TGG 0.334350 3:-29870492 MsG0380013069.01.T01:CDS
ATTCAAACTCATAAAAGTTT+CGG 0.342769 3:+29872546 None:intergenic
CACTTGGACATGGAGCTTGC+AGG 0.363992 3:-29870939 MsG0380013069.01.T01:CDS
GTTGGATTTGCTTGATGCTT+GGG 0.365810 3:-29870682 MsG0380013069.01.T01:CDS
TGCTAAAACTCTACGGGTTT+AGG 0.371505 3:-29870293 MsG0380013069.01.T01:CDS
TAAATATAAAGAGTATAATA+TGG 0.375741 3:-29870796 MsG0380013069.01.T01:CDS
AGAAGTATCATCCGGGGTTA+GGG 0.380704 3:-29870440 MsG0380013069.01.T01:CDS
TTGAATGAAACTTATGCTCT+TGG 0.381407 3:-29872529 MsG0380013069.01.T01:CDS
AAAAGATAATGATCACCAAT+AGG 0.391177 3:+29872376 None:intergenic
AATTGGGCCTTTCGGACCCA+TGG 0.393150 3:+29870656 None:intergenic
ACCCTGAAGTGGAGTGGATT+TGG 0.394154 3:-29870872 MsG0380013069.01.T01:CDS
ATTGGGCTGGGTTGGTTGAT+CGG 0.403121 3:-29870479 MsG0380013069.01.T01:CDS
TCCCAGCCTCCTCTCGAATT+GGG 0.404283 3:+29870640 None:intergenic
GTCCTAAAATCAAGCGGATC+AGG 0.412056 3:-29870254 MsG0380013069.01.T01:CDS
TTGTGGGGTGTAAGCCTTGT+GGG 0.414516 3:-29870389 MsG0380013069.01.T01:CDS
CTACTAAGGCATCTCTCTAC+TGG 0.417101 3:+29870351 None:intergenic
TGTAAGCCTTGTGGGAGTTA+TGG 0.420456 3:-29870381 MsG0380013069.01.T01:CDS
GAGTATAATATGGTTATTCA+TGG 0.422569 3:-29870786 MsG0380013069.01.T01:CDS
ATAGGATTATCACACGGTTT+CGG 0.428352 3:+29872394 None:intergenic
CATGGAGCTTGCAGGTTACT+GGG 0.431346 3:-29870931 MsG0380013069.01.T01:CDS
TGCTGTCAAAGAAGGACAAA+TGG 0.438378 3:-29870545 MsG0380013069.01.T01:CDS
CTCGTCCTACGTGGCACAAT+CGG 0.441138 3:-29872682 MsG0380013069.01.T01:CDS
ATTTGCATGGTTATTGGGCT+GGG 0.441189 3:-29870491 MsG0380013069.01.T01:CDS
AAACCGTGTGATAATCCTAT+TGG 0.442105 3:-29872391 MsG0380013069.01.T01:CDS
TGGTCCTAAGATCCTTAATT+GGG 0.442563 3:-29872509 MsG0380013069.01.T01:CDS
ATTGGGCCTTTCGGACCCAT+GGG 0.445046 3:+29870657 None:intergenic
TTCTGCTCGAACAACAAATC+AGG 0.448355 3:+29870759 None:intergenic
CAAAGGAAGGCCAGCGTTCG+AGG 0.448528 3:-29870598 MsG0380013069.01.T01:CDS
ATCGGATCTCAGCGAGGATA+CGG 0.453679 3:+29872599 None:intergenic
GCATGGTTATTGGGCTGGGT+TGG 0.459215 3:-29870487 MsG0380013069.01.T01:CDS
TAACATGAGCCTTCGAATCA+TGG 0.459737 3:+29870899 None:intergenic
AACTCTACGGGTTTAGGCAC+CGG 0.460664 3:-29870287 MsG0380013069.01.T01:CDS
ATATTTATTGCTGTCAAAGA+AGG 0.460969 3:-29870553 MsG0380013069.01.T01:CDS
CCAGTAAGAAGCAAAATTCT+GGG 0.461505 3:+29872424 None:intergenic
ATACTCTTTATATTTACTCA+TGG 0.463243 3:+29870803 None:intergenic
TGTGTACAACATGGCTCACT+TGG 0.467982 3:-29870955 MsG0380013069.01.T01:CDS
GGCCCAATTCGAGAGGAGGC+TGG 0.472417 3:-29870642 MsG0380013069.01.T01:CDS
GTTGCCTTCGTATATCAAAC+TGG 0.478121 3:+29870199 None:intergenic
TAACAAAATTAGGATATTCA+CGG 0.478655 3:+29872455 None:intergenic
GAGAATTCTTTCTATTTGCA+TGG 0.494521 3:-29870504 MsG0380013069.01.T01:CDS
AATCAAGTGCTAAAACTCTA+CGG 0.496026 3:-29870300 MsG0380013069.01.T01:CDS
AAGCCCTCTCCATGCTACTA+AGG 0.496820 3:+29870337 None:intergenic
ACCAAATCCACTCCACTTCA+GGG 0.502114 3:+29870871 None:intergenic
TGATCATCAGCCTCGAACGC+TGG 0.504067 3:+29870588 None:intergenic
CCCACAAAATGTGTCACAAA+CGG 0.510101 3:+29870405 None:intergenic
TCGCAATTGCCAGTGGTCGT+TGG 0.510685 3:-29870700 MsG0380013069.01.T01:CDS
TACTCTTTATATTTACTCAT+GGG 0.516003 3:+29870804 None:intergenic
GTTCGAGGCTGATGATCAAT+CGG 0.517529 3:-29870583 MsG0380013069.01.T01:CDS
ATCAAGTGCTAAAACTCTAC+GGG 0.521398 3:-29870299 MsG0380013069.01.T01:CDS
GATGATGGAGAAGTATCATC+CGG 0.521609 3:-29870448 MsG0380013069.01.T01:CDS
GCCCAATTCGAGAGGAGGCT+GGG 0.523969 3:-29870641 MsG0380013069.01.T01:CDS
CAAAAGAGAACAACAAGCAC+AGG 0.524117 3:-29872823 MsG0380013069.01.T01:CDS
AACATGAGCCTTCGAATCAT+GGG 0.527557 3:+29870900 None:intergenic
TCGGTCTGATTCCGATCAGA+TGG 0.529115 3:+29872565 None:intergenic
CAAGCAAATCCAACGACCAC+TGG 0.529363 3:+29870691 None:intergenic
AACTGGTCTACAAACTCTAA+AGG 0.539086 3:+29870216 None:intergenic
GACGTCCACGTGGCAGTGTA+CGG 0.545246 3:+29872764 None:intergenic
CGGGGTTAGGGGATGAGAGG+TGG 0.553753 3:-29870428 MsG0380013069.01.T01:CDS
ACTCTACGGGTTTAGGCACC+GGG 0.555626 3:-29870286 MsG0380013069.01.T01:CDS
CCAAATTGCCCATGATTCGA+AGG 0.557570 3:-29870908 MsG0380013069.01.T01:CDS
AGAGAGATGCCTTAGTAGCA+TGG 0.561542 3:-29870346 MsG0380013069.01.T01:CDS
GGCACAATCGGCGTTAACCT+CGG 0.562299 3:-29872670 MsG0380013069.01.T01:CDS
GGATTATCACACGGTTTCGG+AGG 0.569607 3:+29872397 None:intergenic
GTCAAAGAAGGACAAATGGA+TGG 0.573047 3:-29870541 MsG0380013069.01.T01:CDS
TCTTGGATCGCAATCAACAC+AGG 0.574658 3:-29870735 MsG0380013069.01.T01:CDS
TGATCGGTATGAAGAGATGA+TGG 0.577526 3:-29870463 MsG0380013069.01.T01:CDS
CATGTTATCACACCCTGAAG+TGG 0.577774 3:-29870883 MsG0380013069.01.T01:CDS
CTGAAGTGGAGTGGATTTGG+TGG 0.580330 3:-29870869 MsG0380013069.01.T01:CDS
AGTATAATATGGTTATTCAT+GGG 0.580740 3:-29870785 MsG0380013069.01.T01:CDS
CAACATGGCTCACTTGGACA+TGG 0.584694 3:-29870949 MsG0380013069.01.T01:CDS
TTGGGCCTTTCGGACCCATG+GGG 0.585320 3:+29870658 None:intergenic
GAAGGACAAATGGATGGAGA+AGG 0.593298 3:-29870535 MsG0380013069.01.T01:CDS
ATGCCTTAGTAGCATGGAGA+GGG 0.593651 3:-29870340 MsG0380013069.01.T01:CDS
CACCTCTCATCCCCTAACCC+CGG 0.593781 3:+29870429 None:intergenic
TGACGGCAAATCTCAAAGGA+AGG 0.593858 3:-29870611 MsG0380013069.01.T01:CDS
ATGATGGAGAAGTATCATCC+GGG 0.594919 3:-29870447 MsG0380013069.01.T01:CDS
TAGACCAGTTTGATATACGA+AGG 0.595190 3:-29870203 MsG0380013069.01.T01:CDS
AGTGGAGTGGATTTGGTGGA+TGG 0.596443 3:-29870865 MsG0380013069.01.T01:CDS
CTGATTCCGATCAGATGGAT+CGG 0.599712 3:+29872570 None:intergenic
GGTTAACGCCGCTGTTATCG+AGG 0.602338 3:-29872629 MsG0380013069.01.T01:CDS
CGATTGTGCCACGTAGGACG+AGG 0.603186 3:+29872683 None:intergenic
TTATGATACTGCAGATTGCA+TGG 0.605370 3:-29870987 MsG0380013069.01.T01:intron
GATATACGAAGGCAACATGC+AGG 0.607469 3:-29870192 MsG0380013069.01.T01:CDS
ATCCGGGGTTAGGGGATGAG+AGG 0.609923 3:-29870431 MsG0380013069.01.T01:CDS
GGGATACTGAGAGAACAAGT+TGG 0.615463 3:-29872489 MsG0380013069.01.T01:CDS
CAGATGGATCGGAATCAGAT+CGG 0.617890 3:+29872581 None:intergenic
AAGAGAACAACAAGCACAGG+AGG 0.624084 3:-29872820 MsG0380013069.01.T01:CDS
TGGGCCTTTCGGACCCATGG+GGG 0.628202 3:+29870659 None:intergenic
TCCGAAAGGCCCAATTCGAG+AGG 0.629140 3:-29870649 MsG0380013069.01.T01:CDS
CATCGTTCTGTGATGTGCCG+AGG 0.629271 3:+29872653 None:intergenic
GAAAGGCCCAATTCGAGAGG+AGG 0.629628 3:-29870646 MsG0380013069.01.T01:CDS
CTGATTCCGATCCATCTGAT+CGG 0.638243 3:-29872576 MsG0380013069.01.T01:CDS
GAAGTATCATCCGGGGTTAG+GGG 0.638473 3:-29870439 MsG0380013069.01.T01:CDS
TTTGTGGGGTGTAAGCCTTG+TGG 0.644111 3:-29870390 MsG0380013069.01.T01:CDS
TGTTAAGTCCTAAAATCAAG+CGG 0.644756 3:-29870260 MsG0380013069.01.T01:CDS
GATGCCTTAGTAGCATGGAG+AGG 0.645528 3:-29870341 MsG0380013069.01.T01:CDS
CTTGGATCGCAATCAACACA+GGG 0.648132 3:-29870734 MsG0380013069.01.T01:CDS
TATCACACCCTGAAGTGGAG+TGG 0.650624 3:-29870878 MsG0380013069.01.T01:CDS
GTAACAATCCTCGTCCTACG+TGG 0.672440 3:-29872691 MsG0380013069.01.T01:CDS
GGATTGTTACGAAACCGCAG+AGG 0.680262 3:+29872704 None:intergenic
CATTGAAATTGTGTACAACA+TGG 0.690436 3:-29870964 MsG0380013069.01.T01:CDS
AATCAGATCGGATCTCAGCG+AGG 0.690802 3:+29872593 None:intergenic
CGTAACCGTACACTGCCACG+TGG 0.692950 3:-29872769 MsG0380013069.01.T01:CDS
TGGCAGTGTACGGTTACGTG+AGG 0.694238 3:+29872774 None:intergenic
TGATGCATTCTTCACTGACA+TGG 0.695080 3:-29870838 MsG0380013069.01.T01:CDS
TAATCTCCATAACTCCCACA+AGG 0.704992 3:+29870375 None:intergenic
GTTAGTTTCCTCGATAACAG+CGG 0.713951 3:+29872621 None:intergenic
TGATGGAGAAGTATCATCCG+GGG 0.720150 3:-29870446 MsG0380013069.01.T01:CDS
ATAAAGATCACAATCCTCTG+CGG 0.729589 3:-29872718 MsG0380013069.01.T01:CDS
AAGGCAACATGCAGGCACTG+TGG 0.731966 3:-29870184 MsG0380013069.01.T01:CDS
CTCTACGGGTTTAGGCACCG+GGG 0.732537 3:-29870285 MsG0380013069.01.T01:CDS
TAACGCCGATTGTGCCACGT+AGG 0.737361 3:+29872677 None:intergenic
CGGCACATCACAGAACGATG+CGG 0.749199 3:-29872650 MsG0380013069.01.T01:CDS
TCACCAATAGGATTATCACA+CGG 0.755282 3:+29872388 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATATAAAGAGTATAATA+TGG - Chr3:29872221-29872240 MsG0380013069.01.T01:intron 10.0%
!!! TTTTTTGTTACAAAAATTTA+CGG - Chr3:29871521-29871540 MsG0380013069.01.T01:intron 10.0%
!!! TATTATTACTTTTCAAGATT+TGG - Chr3:29871131-29871150 MsG0380013069.01.T01:intron 15.0%
!!! TGTTTTTATATAAGCTATAT+TGG - Chr3:29870926-29870945 MsG0380013069.01.T01:CDS 15.0%
!!! TTAATTTACTTTTTAGGATT+TGG - Chr3:29871566-29871585 MsG0380013069.01.T01:intron 15.0%
!!! TTTTTGTTACAAAAATTTAC+GGG - Chr3:29871522-29871541 MsG0380013069.01.T01:intron 15.0%
!! AATTACTGAATACAAATGTT+TGG - Chr3:29871478-29871497 MsG0380013069.01.T01:intron 20.0%
!! AGTATAATATGGTTATTCAT+GGG - Chr3:29872232-29872251 MsG0380013069.01.T01:intron 20.0%
!! ATACTCTTTATATTTACTCA+TGG + Chr3:29872217-29872236 None:intergenic 20.0%
!! ATTCAAACTCATAAAAGTTT+CGG + Chr3:29870474-29870493 None:intergenic 20.0%
!! TAACAAAATTAGGATATTCA+CGG + Chr3:29870565-29870584 None:intergenic 20.0%
!! TACTCTTTATATTTACTCAT+GGG + Chr3:29872216-29872235 None:intergenic 20.0%
!!! AATATCCTAATTTTGTTAAG+GGG - Chr3:29870567-29870586 MsG0380013069.01.T01:CDS 20.0%
!!! GAATATCCTAATTTTGTTAA+GGG - Chr3:29870566-29870585 MsG0380013069.01.T01:CDS 20.0%
!!! TGAATATCCTAATTTTGTTA+AGG - Chr3:29870565-29870584 MsG0380013069.01.T01:CDS 20.0%
!!! TTATGTTGTTGAATGTTTTT+TGG + Chr3:29870283-29870302 None:intergenic 20.0%
! AAAAGATAATGATCACCAAT+AGG + Chr3:29870644-29870663 None:intergenic 25.0%
! ATATTTATTGCTGTCAAAGA+AGG - Chr3:29872464-29872483 MsG0380013069.01.T01:CDS 25.0%
! CTTTCATCTGTTATTCAAAA+CGG - Chr3:29871877-29871896 MsG0380013069.01.T01:intron 25.0%
! GAGTATAATATGGTTATTCA+TGG - Chr3:29872231-29872250 MsG0380013069.01.T01:intron 25.0%
! GGTAAATGTTAGTAAATTAG+CGG - Chr3:29871543-29871562 MsG0380013069.01.T01:intron 25.0%
! TTTCTATTTGCATGGTTATT+GGG - Chr3:29872521-29872540 MsG0380013069.01.T01:CDS 25.0%
!! ACAAAAAATAGCTTTTGCAA+TGG - Chr3:29871634-29871653 MsG0380013069.01.T01:intron 25.0%
!! CCTATAAAAATGAGCTTTAA+AGG + Chr3:29871086-29871105 None:intergenic 25.0%
!!! CCTTTAAAGCTCATTTTTAT+AGG - Chr3:29871083-29871102 MsG0380013069.01.T01:intron 25.0%
!!! TAGCGGTTAATTTACTTTTT+AGG - Chr3:29871560-29871579 MsG0380013069.01.T01:intron 25.0%
AAATAAGCCTAATCCAAACA+GGG - Chr3:29871054-29871073 MsG0380013069.01.T01:intron 30.0%
AATCAAGTGCTAAAACTCTA+CGG - Chr3:29872717-29872736 MsG0380013069.01.T01:CDS 30.0%
ATAAAAGAGCAGAGTAAAGA+TGG + Chr3:29871801-29871820 None:intergenic 30.0%
ATTTGCATATAGTATGTGGT+TGG - Chr3:29871419-29871438 MsG0380013069.01.T01:intron 30.0%
CAAATAAGTTTCTTCACTTC+AGG + Chr3:29871923-29871942 None:intergenic 30.0%
CATTGAAATTGTGTACAACA+TGG - Chr3:29872053-29872072 MsG0380013069.01.T01:intron 30.0%
CTTGACAAATAATGTGTGTT+TGG - Chr3:29871383-29871402 MsG0380013069.01.T01:intron 30.0%
CTTTCTATTTGCATGGTTAT+TGG - Chr3:29872520-29872539 MsG0380013069.01.T01:CDS 30.0%
GAGAATTCTTTCTATTTGCA+TGG - Chr3:29872513-29872532 MsG0380013069.01.T01:CDS 30.0%
TAAATAAGCCTAATCCAAAC+AGG - Chr3:29871053-29871072 MsG0380013069.01.T01:intron 30.0%
TGTTAAGTCCTAAAATCAAG+CGG - Chr3:29872757-29872776 MsG0380013069.01.T01:CDS 30.0%
TTGAATGAAACTTATGCTCT+TGG - Chr3:29870488-29870507 MsG0380013069.01.T01:CDS 30.0%
TTGCATTTGCATATAGTATG+TGG - Chr3:29871415-29871434 MsG0380013069.01.T01:intron 30.0%
! TAACAGATGAAAGCATAAGA+TGG + Chr3:29871870-29871889 None:intergenic 30.0%
! TTTTTGTTCGACAACTCAAT+TGG + Chr3:29871621-29871640 None:intergenic 30.0%
!! ATAAGTTTTGTGAGACTGTT+CGG + Chr3:29871018-29871037 None:intergenic 30.0%
!! CAGTACATTTAGTTTGTGTT+TGG - Chr3:29870783-29870802 MsG0380013069.01.T01:CDS 30.0%
AAACCGTGTGATAATCCTAT+TGG - Chr3:29870626-29870645 MsG0380013069.01.T01:CDS 35.0%
ACCAGTAAGAAGCAAAATTC+TGG + Chr3:29870597-29870616 None:intergenic 35.0%
ATAAAGATCACAATCCTCTG+CGG - Chr3:29870299-29870318 MsG0380013069.01.T01:CDS 35.0%
ATAGGATTATCACACGGTTT+CGG + Chr3:29870626-29870645 None:intergenic 35.0%
ATCAAGTGCTAAAACTCTAC+GGG - Chr3:29872718-29872737 MsG0380013069.01.T01:CDS 35.0%
CAACTCAGTTTGTGAGTTAA+GGG + Chr3:29871189-29871208 None:intergenic 35.0%
CCAGTAAGAAGCAAAATTCT+GGG + Chr3:29870596-29870615 None:intergenic 35.0%
GGTTTCCCCTTAACAAAATT+AGG + Chr3:29870575-29870594 None:intergenic 35.0%
GTATCCCAATTAAGGATCTT+AGG + Chr3:29870515-29870534 None:intergenic 35.0%
TAGACCAGTTTGATATACGA+AGG - Chr3:29872814-29872833 MsG0380013069.01.T01:CDS 35.0%
TCACCAATAGGATTATCACA+CGG + Chr3:29870632-29870651 None:intergenic 35.0%
TGGTCCTAAGATCCTTAATT+GGG - Chr3:29870508-29870527 MsG0380013069.01.T01:CDS 35.0%
TTATGATACTGCAGATTGCA+TGG - Chr3:29872030-29872049 MsG0380013069.01.T01:intron 35.0%
TTCTCTCAGTATCCCAATTA+AGG + Chr3:29870523-29870542 None:intergenic 35.0%
TTGGTCCTAAGATCCTTAAT+TGG - Chr3:29870507-29870526 MsG0380013069.01.T01:CDS 35.0%
! AACTGGTCTACAAACTCTAA+AGG + Chr3:29872804-29872823 None:intergenic 35.0%
! AACTTGATTTTGAACGAGCT+TGG + Chr3:29871340-29871359 None:intergenic 35.0%
! ATTGGTGATCTAAGAGTTGA+AGG + Chr3:29871603-29871622 None:intergenic 35.0%
!! ATTTTGACGGCAAATCTCAA+AGG - Chr3:29872402-29872421 MsG0380013069.01.T01:CDS 35.0%
!!! TTTTAGGACTTAACAATCCC+CGG + Chr3:29872752-29872771 None:intergenic 35.0%
AACATGAGCCTTCGAATCAT+GGG + Chr3:29872120-29872139 None:intergenic 40.0%
ACAAATGTTTGGTTGCTGTC+TGG - Chr3:29871489-29871508 MsG0380013069.01.T01:intron 40.0%
AGCAGAGTAAAGATGGAGTT+TGG + Chr3:29871794-29871813 None:intergenic 40.0%
ATTTGCATGGTTATTGGGCT+GGG - Chr3:29872526-29872545 MsG0380013069.01.T01:CDS 40.0%
CAAAAGAGAACAACAAGCAC+AGG - Chr3:29870194-29870213 MsG0380013069.01.T01:CDS 40.0%
CCCACAAAATGTGTCACAAA+CGG + Chr3:29872615-29872634 None:intergenic 40.0%
GCAACTCAGTTTGTGAGTTA+AGG + Chr3:29871190-29871209 None:intergenic 40.0%
GCAGAGTAAAGATGGAGTTT+GGG + Chr3:29871793-29871812 None:intergenic 40.0%
GCATAAGATGGAAAAGCAGT+AGG + Chr3:29871858-29871877 None:intergenic 40.0%
GTCAAAGAAGGACAAATGGA+TGG - Chr3:29872476-29872495 MsG0380013069.01.T01:CDS 40.0%
GTTGCCTTCGTATATCAAAC+TGG + Chr3:29872821-29872840 None:intergenic 40.0%
TAACATGAGCCTTCGAATCA+TGG + Chr3:29872121-29872140 None:intergenic 40.0%
TAATCTCCATAACTCCCACA+AGG + Chr3:29872645-29872664 None:intergenic 40.0%
TATTTGCATGGTTATTGGGC+TGG - Chr3:29872525-29872544 MsG0380013069.01.T01:CDS 40.0%
TCAGTTTGTGAGTTAAGGGA+CGG + Chr3:29871185-29871204 None:intergenic 40.0%
TGATCGGTATGAAGAGATGA+TGG - Chr3:29872554-29872573 MsG0380013069.01.T01:CDS 40.0%
TGATGCATTCTTCACTGACA+TGG - Chr3:29872179-29872198 MsG0380013069.01.T01:intron 40.0%
TGCTAAAACTCTACGGGTTT+AGG - Chr3:29872724-29872743 MsG0380013069.01.T01:CDS 40.0%
TGCTGTCAAAGAAGGACAAA+TGG - Chr3:29872472-29872491 MsG0380013069.01.T01:CDS 40.0%
TGTTGTTCGAGCAGAATTCT+TGG - Chr3:29872265-29872284 MsG0380013069.01.T01:intron 40.0%
TTAAAGGCAAAGTCCCTGTT+TGG + Chr3:29871070-29871089 None:intergenic 40.0%
TTCTGCTCGAACAACAAATC+AGG + Chr3:29872261-29872280 None:intergenic 40.0%
! CCCAGAATTTTGCTTCTTAC+TGG - Chr3:29870593-29870612 MsG0380013069.01.T01:CDS 40.0%
! CCGTTTGTGACACATTTTGT+GGG - Chr3:29872612-29872631 MsG0380013069.01.T01:CDS 40.0%
! CGTTTGTGACACATTTTGTG+GGG - Chr3:29872613-29872632 MsG0380013069.01.T01:CDS 40.0%
! GAGGTTGTTGTTGTTGTTGT+TGG + Chr3:29870227-29870246 None:intergenic 40.0%
! GTTAGTTTCCTCGATAACAG+CGG + Chr3:29870399-29870418 None:intergenic 40.0%
! GTTGGATTTGCTTGATGCTT+GGG - Chr3:29872335-29872354 MsG0380013069.01.T01:intron 40.0%
! TTCCTGATCCGCTTGATTTT+AGG + Chr3:29872768-29872787 None:intergenic 40.0%
!! ATGATGGAGAAGTATCATCC+GGG - Chr3:29872570-29872589 MsG0380013069.01.T01:CDS 40.0%
!! GATGATGGAGAAGTATCATC+CGG - Chr3:29872569-29872588 MsG0380013069.01.T01:CDS 40.0%
!! TTTTGTTTCGCAATTGCCAG+TGG - Chr3:29872310-29872329 MsG0380013069.01.T01:intron 40.0%
AAGAGAACAACAAGCACAGG+AGG - Chr3:29870197-29870216 MsG0380013069.01.T01:CDS 45.0%
ACCAAATCCACTCCACTTCA+GGG + Chr3:29872149-29872168 None:intergenic 45.0%
AGAGAGATGCCTTAGTAGCA+TGG - Chr3:29872671-29872690 MsG0380013069.01.T01:CDS 45.0%
ATGCCTTAGTAGCATGGAGA+GGG - Chr3:29872677-29872696 MsG0380013069.01.T01:CDS 45.0%
ATGGAGTTTGGGTGAGCAAT+TGG + Chr3:29871782-29871801 None:intergenic 45.0%
CAGATGGATCGGAATCAGAT+CGG + Chr3:29870439-29870458 None:intergenic 45.0%
CATGTTATCACACCCTGAAG+TGG - Chr3:29872134-29872153 MsG0380013069.01.T01:intron 45.0%
CCAAATTGCCCATGATTCGA+AGG - Chr3:29872109-29872128 MsG0380013069.01.T01:intron 45.0%
CCTTCGAATCATGGGCAATT+TGG + Chr3:29872112-29872131 None:intergenic 45.0%
CTGATTCCGATCAGATGGAT+CGG + Chr3:29870450-29870469 None:intergenic 45.0%
CTGATTCCGATCCATCTGAT+CGG - Chr3:29870441-29870460 MsG0380013069.01.T01:CDS 45.0%
CTTGGATCGCAATCAACACA+GGG - Chr3:29872283-29872302 MsG0380013069.01.T01:intron 45.0%
GAAGGACAAATGGATGGAGA+AGG - Chr3:29872482-29872501 MsG0380013069.01.T01:CDS 45.0%
GATATACGAAGGCAACATGC+AGG - Chr3:29872825-29872844 MsG0380013069.01.T01:CDS 45.0%
GCAAAGTCCCTGTTTGGATT+AGG + Chr3:29871064-29871083 None:intergenic 45.0%
GGGATACTGAGAGAACAAGT+TGG - Chr3:29870528-29870547 MsG0380013069.01.T01:CDS 45.0%
GTCCTAAAATCAAGCGGATC+AGG - Chr3:29872763-29872782 MsG0380013069.01.T01:CDS 45.0%
GTTCGAGGCTGATGATCAAT+CGG - Chr3:29872434-29872453 MsG0380013069.01.T01:CDS 45.0%
TCTTGGATCGCAATCAACAC+AGG - Chr3:29872282-29872301 MsG0380013069.01.T01:intron 45.0%
TGACGGCAAATCTCAAAGGA+AGG - Chr3:29872406-29872425 MsG0380013069.01.T01:CDS 45.0%
TGTGTACAACATGGCTCACT+TGG - Chr3:29872062-29872081 MsG0380013069.01.T01:intron 45.0%
TTTGTGAGTTAAGGGACGGA+AGG + Chr3:29871181-29871200 None:intergenic 45.0%
! CGTTGGATTTGCTTGATGCT+TGG - Chr3:29872334-29872353 MsG0380013069.01.T01:intron 45.0%
! CTACTAAGGCATCTCTCTAC+TGG + Chr3:29872669-29872688 None:intergenic 45.0%
! GCCGTTTGTGACACATTTTG+TGG - Chr3:29872611-29872630 MsG0380013069.01.T01:CDS 45.0%
! TGTAAGCCTTGTGGGAGTTA+TGG - Chr3:29872636-29872655 MsG0380013069.01.T01:CDS 45.0%
!! AGAAGTATCATCCGGGGTTA+GGG - Chr3:29872577-29872596 MsG0380013069.01.T01:CDS 45.0%
!! TGATGGAGAAGTATCATCCG+GGG - Chr3:29872571-29872590 MsG0380013069.01.T01:CDS 45.0%
AACTCTACGGGTTTAGGCAC+CGG - Chr3:29872730-29872749 MsG0380013069.01.T01:CDS 50.0%
AAGCCCTCTCCATGCTACTA+AGG + Chr3:29872683-29872702 None:intergenic 50.0%
AATCAGATCGGATCTCAGCG+AGG + Chr3:29870427-29870446 None:intergenic 50.0%
ACATGGAGCTTGCAGGTTAC+TGG - Chr3:29872085-29872104 MsG0380013069.01.T01:intron 50.0%
ATCGGATCTCAGCGAGGATA+CGG + Chr3:29870421-29870440 None:intergenic 50.0%
CAACATGGCTCACTTGGACA+TGG - Chr3:29872068-29872087 MsG0380013069.01.T01:intron 50.0%
CAAGCAAATCCAACGACCAC+TGG + Chr3:29872329-29872348 None:intergenic 50.0%
CACCAAATCCACTCCACTTC+AGG + Chr3:29872150-29872169 None:intergenic 50.0%
CATGGAGCTTGCAGGTTACT+GGG - Chr3:29872086-29872105 MsG0380013069.01.T01:intron 50.0%
GATGCCTTAGTAGCATGGAG+AGG - Chr3:29872676-29872695 MsG0380013069.01.T01:CDS 50.0%
GGATTATCACACGGTTTCGG+AGG + Chr3:29870623-29870642 None:intergenic 50.0%
GGATTGTTACGAAACCGCAG+AGG + Chr3:29870316-29870335 None:intergenic 50.0%
GTAACAATCCTCGTCCTACG+TGG - Chr3:29870326-29870345 MsG0380013069.01.T01:CDS 50.0%
TATCACACCCTGAAGTGGAG+TGG - Chr3:29872139-29872158 MsG0380013069.01.T01:intron 50.0%
TCCTCTCGAATTGGGCCTTT+CGG + Chr3:29872372-29872391 None:intergenic 50.0%
TCGGTCTGATTCCGATCAGA+TGG + Chr3:29870455-29870474 None:intergenic 50.0%
TTTGTGGGGTGTAAGCCTTG+TGG - Chr3:29872627-29872646 MsG0380013069.01.T01:CDS 50.0%
! ACCCTGAAGTGGAGTGGATT+TGG - Chr3:29872145-29872164 MsG0380013069.01.T01:intron 50.0%
! CTGAAGTGGAGTGGATTTGG+TGG - Chr3:29872148-29872167 MsG0380013069.01.T01:intron 50.0%
! GAAGTATCATCCGGGGTTAG+GGG - Chr3:29872578-29872597 MsG0380013069.01.T01:CDS 50.0%
! GGAGGCTGGGAAGATTTTGA+CGG - Chr3:29872389-29872408 MsG0380013069.01.T01:CDS 50.0%
! TTGTGGGGTGTAAGCCTTGT+GGG - Chr3:29872628-29872647 MsG0380013069.01.T01:CDS 50.0%
! TTTTGGATCTGACGTCCACG+TGG + Chr3:29870266-29870285 None:intergenic 50.0%
!! AGTGGAGTGGATTTGGTGGA+TGG - Chr3:29872152-29872171 MsG0380013069.01.T01:intron 50.0%
!! ATTGGGCTGGGTTGGTTGAT+CGG - Chr3:29872538-29872557 MsG0380013069.01.T01:CDS 50.0%
!! GAGAAGTATCATCCGGGGTT+AGG - Chr3:29872576-29872595 MsG0380013069.01.T01:CDS 50.0%
AATTGGGCCTTTCGGACCCA+TGG + Chr3:29872364-29872383 None:intergenic 55.0%
ACTCTACGGGTTTAGGCACC+GGG - Chr3:29872731-29872750 MsG0380013069.01.T01:CDS 55.0%
ATTGGGCCTTTCGGACCCAT+GGG + Chr3:29872363-29872382 None:intergenic 55.0%
CACTTGGACATGGAGCTTGC+AGG - Chr3:29872078-29872097 MsG0380013069.01.T01:intron 55.0%
CATCGTTCTGTGATGTGCCG+AGG + Chr3:29870367-29870386 None:intergenic 55.0%
CGGCACATCACAGAACGATG+CGG - Chr3:29870367-29870386 MsG0380013069.01.T01:CDS 55.0%
CTCGTCCTACGTGGCACAAT+CGG - Chr3:29870335-29870354 MsG0380013069.01.T01:CDS 55.0%
GAAAGGCCCAATTCGAGAGG+AGG - Chr3:29872371-29872390 MsG0380013069.01.T01:CDS 55.0%
GAGTCCTCGTCATGAGGTCT+AGG + Chr3:29871159-29871178 None:intergenic 55.0%
GGATCCTAGACCTCATGACG+AGG - Chr3:29871152-29871171 MsG0380013069.01.T01:intron 55.0%
GGCACAATCGGCGTTAACCT+CGG - Chr3:29870347-29870366 MsG0380013069.01.T01:CDS 55.0%
GGTTAACGCCGCTGTTATCG+AGG - Chr3:29870388-29870407 MsG0380013069.01.T01:CDS 55.0%
TCCCAGCCTCCTCTCGAATT+GGG + Chr3:29872380-29872399 None:intergenic 55.0%
TCCGAAAGGCCCAATTCGAG+AGG - Chr3:29872368-29872387 MsG0380013069.01.T01:CDS 55.0%
TCGCAATTGCCAGTGGTCGT+TGG - Chr3:29872317-29872336 MsG0380013069.01.T01:intron 55.0%
TGATCATCAGCCTCGAACGC+TGG + Chr3:29872432-29872451 None:intergenic 55.0%
TGGCAGTGTACGGTTACGTG+AGG + Chr3:29870246-29870265 None:intergenic 55.0%
TTCCCAGCCTCCTCTCGAAT+TGG + Chr3:29872381-29872400 None:intergenic 55.0%
! AAGGCAACATGCAGGCACTG+TGG - Chr3:29872833-29872852 MsG0380013069.01.T01:CDS 55.0%
! GCATGGTTATTGGGCTGGGT+TGG - Chr3:29872530-29872549 MsG0380013069.01.T01:CDS 55.0%
! TAACGCCGATTGTGCCACGT+AGG + Chr3:29870343-29870362 None:intergenic 55.0%
ATCCGGGGTTAGGGGATGAG+AGG - Chr3:29872586-29872605 MsG0380013069.01.T01:CDS 60.0%
CAAAGGAAGGCCAGCGTTCG+AGG - Chr3:29872419-29872438 MsG0380013069.01.T01:CDS 60.0%
CACCTCTCATCCCCTAACCC+CGG + Chr3:29872591-29872610 None:intergenic 60.0%
CGATTGTGCCACGTAGGACG+AGG + Chr3:29870337-29870356 None:intergenic 60.0%
CGGAAGGAGTCCTCGTCATG+AGG + Chr3:29871165-29871184 None:intergenic 60.0%
CGTAACCGTACACTGCCACG+TGG - Chr3:29870248-29870267 MsG0380013069.01.T01:CDS 60.0%
CTTGATGCTTGGGCCCCCAT+GGG - Chr3:29872345-29872364 MsG0380013069.01.T01:intron 60.0%
GACGTCCACGTGGCAGTGTA+CGG + Chr3:29870256-29870275 None:intergenic 60.0%
GCCCAATTCGAGAGGAGGCT+GGG - Chr3:29872376-29872395 MsG0380013069.01.T01:CDS 60.0%
TTGGGCCTTTCGGACCCATG+GGG + Chr3:29872362-29872381 None:intergenic 60.0%
! CTCTACGGGTTTAGGCACCG+GGG - Chr3:29872732-29872751 MsG0380013069.01.T01:CDS 60.0%
CGGGGTTAGGGGATGAGAGG+TGG - Chr3:29872589-29872608 MsG0380013069.01.T01:CDS 65.0%
GCTTGATGCTTGGGCCCCCA+TGG - Chr3:29872344-29872363 MsG0380013069.01.T01:intron 65.0%
GGCCCAATTCGAGAGGAGGC+TGG - Chr3:29872375-29872394 MsG0380013069.01.T01:CDS 65.0%
TGGGCCTTTCGGACCCATGG+GGG + Chr3:29872361-29872380 None:intergenic 65.0%
TGGGCCCCCATGGGTCCGAA+AGG - Chr3:29872354-29872373 MsG0380013069.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 29870170 29872869 29870170 ID=MsG0380013069.01;Name=MsG0380013069.01
Chr3 mRNA 29870170 29872869 29870170 ID=MsG0380013069.01.T01;Parent=MsG0380013069.01;Name=MsG0380013069.01.T01;_AED=0.37;_eAED=0.37;_QI=0|0|0|1|1|1|2|0|447
Chr3 exon 29872352 29872869 29872352 ID=MsG0380013069.01.T01:exon:6849;Parent=MsG0380013069.01.T01
Chr3 exon 29870170 29870995 29870170 ID=MsG0380013069.01.T01:exon:6850;Parent=MsG0380013069.01.T01
Chr3 CDS 29872352 29872869 29872352 ID=MsG0380013069.01.T01:cds;Parent=MsG0380013069.01.T01
Chr3 CDS 29870170 29870995 29870170 ID=MsG0380013069.01.T01:cds;Parent=MsG0380013069.01.T01
Gene Sequence

>MsG0380013069.01.T01

ATGGGACAAGAAAACAACTTAACACAAAAGAGAACAACAAGCACAGGAGGATTACCAACAACAACAACAACAACCTCACGTAACCGTACACTGCCACGTGGACGTCAGATCCAAAAAACATTCAACAACATAAAGATCACAATCCTCTGCGGTTTCGTAACAATCCTCGTCCTACGTGGCACAATCGGCGTTAACCTCGGCACATCACAGAACGATGCGGTTAACGCCGCTGTTATCGAGGAAACTAACCGTATCCTCGCTGAGATCCGATCTGATTCCGATCCATCTGATCGGAATCAGACCGAAACTTTTATGAGTTTGAATGAAACTTATGCTCTTGGTCCTAAGATCCTTAATTGGGATACTGAGAGAACAAGTTGGTTAGATAAGAACCGTGAATATCCTAATTTTGTTAAGGGGAAACCCAGAATTTTGCTTCTTACTGGTTCGCCTCCGAAACCGTGTGATAATCCTATTGGTGATCATTATCTTTTGAAATCTATCAAGAATAAGATTGTATTGCATGGCATTGAAATTGTGTACAACATGGCTCACTTGGACATGGAGCTTGCAGGTTACTGGGCCAAATTGCCCATGATTCGAAGGCTCATGTTATCACACCCTGAAGTGGAGTGGATTTGGTGGATGGACAGTGATGCATTCTTCACTGACATGGTGTTTGAGCTTCCCATGAGTAAATATAAAGAGTATAATATGGTTATTCATGGGTATCCTGATTTGTTGTTCGAGCAGAATTCTTGGATCGCAATCAACACAGGGAGCTTTTTGTTTCGCAATTGCCAGTGGTCGTTGGATTTGCTTGATGCTTGGGCCCCCATGGGTCCGAAAGGCCCAATTCGAGAGGAGGCTGGGAAGATTTTGACGGCAAATCTCAAAGGAAGGCCAGCGTTCGAGGCTGATGATCAATCGGCGTTGATATATTTATTGCTGTCAAAGAAGGACAAATGGATGGAGAAGGTATTTCTTGAGAATTCTTTCTATTTGCATGGTTATTGGGCTGGGTTGGTTGATCGGTATGAAGAGATGATGGAGAAGTATCATCCGGGGTTAGGGGATGAGAGGTGGCCGTTTGTGACACATTTTGTGGGGTGTAAGCCTTGTGGGAGTTATGGAGATTATCCAGTAGAGAGATGCCTTAGTAGCATGGAGAGGGCTTTCAATTTTGCAGATAATCAAGTGCTAAAACTCTACGGGTTTAGGCACCGGGGATTGTTAAGTCCTAAAATCAAGCGGATCAGGAACGAGACGATTACTCCTTTAGAGTTTGTAGACCAGTTTGATATACGAAGGCAACATGCAGGCACTGTGGAACCAAAAAATTAG
Protein sequence

>MsG0380013069.01.T01

MGQENNLTQKRTTSTGGLPTTTTTTSRNRTLPRGRQIQKTFNNIKITILCGFVTILVLRGTIGVNLGTSQNDAVNAAVIEETNRILAEIRSDSDPSDRNQTETFMSLNETYALGPKILNWDTERTSWLDKNREYPNFVKGKPRILLLTGSPPKPCDNPIGDHYLLKSIKNKIVLHGIEIVYNMAHLDMELAGYWAKLPMIRRLMLSHPEVEWIWWMDSDAFFTDMVFELPMSKYKEYNMVIHGYPDLLFEQNSWIAINTGSFLFRNCQWSLDLLDAWAPMGPKGPIREEAGKILTANLKGRPAFEADDQSALIYLLLSKKDKWMEKVFLENSFYLHGYWAGLVDRYEEMMEKYHPGLGDERWPFVTHFVGCKPCGSYGDYPVERCLSSMERAFNFADNQVLKLYGFRHRGLLSPKIKRIRNETITPLEFVDQFDIRRQHAGTVEPKN*