Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008574.01.T01 | XP_024632012.2 | 98.4 | 250 | 4 | 0 | 2 | 251 | 94 | 343 | 6.76E-178 | 515 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008574.01.T01 | Q0WT48 | 88.259 | 247 | 29 | 0 | 5 | 251 | 97 | 343 | 8.10E-162 | 467 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008574.01.T01 | A0A396JBB3 | 98.400 | 250 | 4 | 0 | 2 | 251 | 94 | 343 | 3.23e-178 | 515 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180003411.01 | MsG0280008574.01 | 0.820594 | 6.315723e-53 | 5.018523e-50 |
| MsG0180003937.01 | MsG0280008574.01 | 0.810342 | 1.208885e-50 | 7.268382e-48 |
| MsG0280006304.01 | MsG0280008574.01 | 0.828846 | 7.163533e-55 | 7.204434e-52 |
| MsG0280008523.01 | MsG0280008574.01 | 0.845297 | 4.433858e-59 | 7.355744e-56 |
| MsG0280008574.01 | MsG0280008809.01 | 0.801930 | 7.137063e-49 | 3.451081e-46 |
| MsG0280008574.01 | MsG0280010735.01 | 0.833325 | 5.691310e-56 | 6.532623e-53 |
| MsG0280008574.01 | MsG0280011085.01 | 0.826626 | 2.447180e-54 | 2.307252e-51 |
| MsG0280008574.01 | MsG0380013069.01 | 0.808134 | 3.594886e-50 | 2.039114e-47 |
| MsG0280008574.01 | MsG0380015495.01 | 0.860868 | 1.530030e-63 | 4.244758e-60 |
| MsG0280008574.01 | MsG0380016871.01 | 0.815383 | 9.509848e-52 | 6.546726e-49 |
| MsG0280008574.01 | MsG0380016927.01 | 0.821239 | 4.487824e-53 | 3.630950e-50 |
| MsG0280008574.01 | MsG0380017410.01 | 0.814411 | 1.561577e-51 | 1.047119e-48 |
| MsG0280008574.01 | MsG0380017643.01 | 0.804274 | 2.336872e-49 | 1.199815e-46 |
| MsG0280008574.01 | MsG0480018256.01 | 0.830056 | 3.639589e-55 | 3.792287e-52 |
| MsG0280008574.01 | MsG0480019395.01 | 0.840145 | 1.037313e-57 | 1.464313e-54 |
| MsG0280008574.01 | MsG0480020047.01 | 0.816524 | 5.291328e-52 | 3.758077e-49 |
| MsG0280008574.01 | MsG0480022398.01 | 0.807269 | 5.489072e-50 | 3.043990e-47 |
| MsG0280008574.01 | MsG0480022719.01 | 0.811005 | 8.692734e-51 | 5.320294e-48 |
| MsG0280008574.01 | MsG0480023697.01 | 0.823330 | 1.468236e-53 | 1.260266e-50 |
| MsG0280008574.01 | MsG0580024770.01 | 0.820403 | 6.988129e-53 | 5.524185e-50 |
| MsG0280008574.01 | MsG0580025013.01 | 0.806000 | 1.017467e-49 | 5.461393e-47 |
| MsG0280008574.01 | MsG0580026160.01 | 0.804537 | 2.059578e-49 | 1.064603e-46 |
| MsG0280008574.01 | MsG0580028472.01 | 0.803597 | 3.231926e-49 | 1.630803e-46 |
| MsG0280008574.01 | MsG0580029149.01 | 0.806664 | 7.369458e-50 | 4.022901e-47 |
| MsG0280008574.01 | MsG0580029214.01 | 0.811369 | 7.248058e-51 | 4.478246e-48 |
| MsG0280008574.01 | MsG0680035681.01 | 0.853290 | 2.635628e-61 | 5.666329e-58 |
| MsG0280008574.01 | MsG0780037301.01 | 0.802741 | 4.857500e-49 | 2.397962e-46 |
| MsG0280008574.01 | MsG0780039497.01 | 0.817144 | 3.839205e-52 | 2.773503e-49 |
| MsG0280008574.01 | MsG0780039530.01 | 0.863969 | 1.703316e-64 | 5.260255e-61 |
| MsG0280008574.01 | MsG0780040290.01 | 0.802385 | 5.753180e-49 | 2.814553e-46 |
| MsG0280008574.01 | MsG0880043921.01 | 0.802171 | 6.367733e-49 | 3.098038e-46 |
| MsG0280008574.01 | MsG0880045841.01 | 0.816665 | 4.919937e-52 | 3.507896e-49 |
| MsG0280008574.01 | MsG0880046893.01 | 0.802452 | 5.573850e-49 | 2.731303e-46 |
| MsG0280008574.01 | MsG0880047293.01 | 0.819313 | 1.239965e-52 | 9.507971e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008574.01.T01 | MTR_2g044580 | 98.400 | 250 | 4 | 0 | 2 | 251 | 94 | 343 | 0.0 | 515 |
| MsG0280008574.01.T01 | MTR_7g069480 | 41.558 | 77 | 44 | 1 | 5 | 81 | 25 | 100 | 4.99e-14 | 71.6 |
| MsG0280008574.01.T01 | MTR_1g105540 | 50.000 | 70 | 33 | 2 | 7 | 75 | 35 | 103 | 5.93e-14 | 70.5 |
| MsG0280008574.01.T01 | MTR_7g109340 | 46.479 | 71 | 36 | 2 | 3 | 72 | 22 | 91 | 2.79e-12 | 65.9 |
| MsG0280008574.01.T01 | MTR_3g100020 | 78.571 | 42 | 9 | 0 | 211 | 252 | 84 | 125 | 5.18e-12 | 65.5 |
| MsG0280008574.01.T01 | MTR_2g445200 | 77.500 | 40 | 9 | 0 | 211 | 250 | 72 | 111 | 1.21e-11 | 61.6 |
| MsG0280008574.01.T01 | MTR_3g087030 | 44.776 | 67 | 36 | 1 | 7 | 73 | 82 | 147 | 2.11e-11 | 63.5 |
| MsG0280008574.01.T01 | MTR_1g110310 | 43.284 | 67 | 36 | 2 | 7 | 72 | 16 | 81 | 4.00e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008574.01.T01 | AT1G79940 | 87.903 | 248 | 30 | 0 | 5 | 252 | 97 | 344 | 1.15e-163 | 466 |
| MsG0280008574.01.T01 | AT1G79940 | 88.259 | 247 | 29 | 0 | 5 | 251 | 97 | 343 | 8.26e-163 | 467 |
| MsG0280008574.01.T01 | AT1G79940 | 88.259 | 247 | 29 | 0 | 5 | 251 | 97 | 343 | 8.26e-163 | 467 |
| MsG0280008574.01.T01 | AT1G79940 | 88.259 | 247 | 29 | 0 | 5 | 251 | 97 | 343 | 8.26e-163 | 467 |
| MsG0280008574.01.T01 | AT4G21180 | 73.279 | 247 | 66 | 0 | 5 | 251 | 17 | 263 | 6.73e-134 | 390 |
| MsG0280008574.01.T01 | AT4G21180 | 73.279 | 247 | 66 | 0 | 5 | 251 | 97 | 343 | 3.12e-133 | 390 |
| MsG0280008574.01.T01 | AT3G08970 | 42.857 | 77 | 43 | 1 | 7 | 83 | 27 | 102 | 4.46e-14 | 72.0 |
| MsG0280008574.01.T01 | AT3G08970 | 42.857 | 77 | 43 | 1 | 7 | 83 | 27 | 102 | 4.46e-14 | 72.0 |
| MsG0280008574.01.T01 | AT1G61770 | 49.206 | 63 | 31 | 1 | 7 | 69 | 34 | 95 | 2.64e-12 | 65.9 |
| MsG0280008574.01.T01 | AT1G59725 | 43.836 | 73 | 36 | 3 | 7 | 76 | 4 | 74 | 1.49e-11 | 63.9 |
| MsG0280008574.01.T01 | AT2G22360 | 41.772 | 79 | 43 | 2 | 7 | 83 | 86 | 163 | 1.73e-11 | 63.9 |
| MsG0280008574.01.T01 | AT4G39960 | 42.857 | 77 | 42 | 2 | 7 | 83 | 85 | 159 | 9.71e-11 | 61.6 |
| MsG0280008574.01.T01 | AT4G39960 | 42.857 | 77 | 42 | 2 | 7 | 83 | 85 | 159 | 9.71e-11 | 61.6 |
| MsG0280008574.01.T01 | AT1G59980 | 43.284 | 67 | 36 | 2 | 7 | 72 | 23 | 88 | 9.86e-11 | 61.6 |
Find 49 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGATCCATTTAGTATTCT+TGG | 0.208184 | 2:+34200083 | MsG0280008574.01.T01:CDS |
| GCTCAGTTGACTCGTGAATT+TGG | 0.213919 | 2:+34201457 | MsG0280008574.01.T01:CDS |
| AAGTGATTTCAGACGGATTT+TGG | 0.235201 | 2:+34201501 | MsG0280008574.01.T01:CDS |
| TTACTTCATGAAGCCTTCTT+TGG | 0.292359 | 2:+34201004 | MsG0280008574.01.T01:CDS |
| TTGATGCATCACATAGTTTC+CGG | 0.324576 | 2:-34200964 | None:intergenic |
| TCTAATCCAAGAATACTAAA+TGG | 0.325667 | 2:-34200089 | None:intergenic |
| AGCAAGAGCAGGCCAAGTTT+TGG | 0.339056 | 2:+34201271 | MsG0280008574.01.T01:CDS |
| CTGAATATTGACGGGGCATC+TGG | 0.349101 | 2:+34200852 | MsG0280008574.01.T01:CDS |
| CGTGAAAATTACGAGAAATA+TGG | 0.360286 | 2:+34200363 | MsG0280008574.01.T01:CDS |
| TTTATTGCAGGGATTTCAAA+TGG | 0.379260 | 2:+34200806 | MsG0280008574.01.T01:intron |
| AAACTTCTTCAACCTGGGTC+TGG | 0.383753 | 2:-34200185 | None:intergenic |
| TGAAGCCTTCTTTGGCCCCT+AGG | 0.405088 | 2:+34201012 | MsG0280008574.01.T01:CDS |
| ATTTCAGACTCTGCTGCTCC+AGG | 0.421259 | 2:-34200113 | None:intergenic |
| TCATCATCGGTCCTTCGAAC+TGG | 0.424462 | 2:-34201186 | None:intergenic |
| TTTATTACCTGTCTGCCATC+AGG | 0.432063 | 2:-34200390 | None:intergenic |
| CACAAAGGCTGCTGAATACA+TGG | 0.438061 | 2:+34201158 | MsG0280008574.01.T01:CDS |
| CTGAAATCACTTGCTAAAGA+TGG | 0.456602 | 2:-34201490 | None:intergenic |
| AATTCCTTCTGAATATTGAC+GGG | 0.467489 | 2:+34200844 | MsG0280008574.01.T01:CDS |
| TATCTGCATTCTCTTGCCAT+TGG | 0.468551 | 2:+34200902 | MsG0280008574.01.T01:CDS |
| AGGATGCTGCTTCCAAAACT+TGG | 0.469816 | 2:-34201283 | None:intergenic |
| CAATTCCTTCTGAATATTGA+CGG | 0.485201 | 2:+34200843 | MsG0280008574.01.T01:CDS |
| GCTCTTGCTTAATGTTCTTG+AGG | 0.496316 | 2:-34201257 | None:intergenic |
| CTTCATGAAGTAATAGTAAG+TGG | 0.505667 | 2:-34200994 | None:intergenic |
| TAAGATACCTTCACTAGTGC+AGG | 0.517223 | 2:-34201303 | None:intergenic |
| AGTATTCTTGGATTAGAACC+TGG | 0.519389 | 2:+34200095 | MsG0280008574.01.T01:CDS |
| CCTTCATTAGCTCTTCGAGC+AGG | 0.522999 | 2:-34201537 | None:intergenic |
| CTTTGTCGAGCACATTGCTA+AGG | 0.526153 | 2:+34200311 | MsG0280008574.01.T01:CDS |
| TCAATATTCAGAAGGAATTG+AGG | 0.529811 | 2:-34200840 | None:intergenic |
| TGGCCATCCTGATGGCAGAC+AGG | 0.531999 | 2:+34200383 | MsG0280008574.01.T01:CDS |
| TCAAGATCATCAAAGTATAC+CGG | 0.535024 | 2:+34200945 | MsG0280008574.01.T01:CDS |
| AATATTGACGGGGCATCTGG+TGG | 0.536497 | 2:+34200855 | MsG0280008574.01.T01:CDS |
| CAATATTCAGAAGGAATTGA+GGG | 0.540212 | 2:-34200839 | None:intergenic |
| TTATTGCAGGGATTTCAAAT+GGG | 0.542722 | 2:+34200807 | MsG0280008574.01.T01:intron |
| CTTTAGCAAGTGATTTCAGA+CGG | 0.548542 | 2:+34201494 | MsG0280008574.01.T01:CDS |
| GAGAAATATGGCCATCCTGA+TGG | 0.548787 | 2:+34200375 | MsG0280008574.01.T01:CDS |
| CAAGAACATTAAGCAAGAGC+AGG | 0.574845 | 2:+34201260 | MsG0280008574.01.T01:CDS |
| ATATACCTAGGGGCCAAAGA+AGG | 0.576022 | 2:-34201017 | None:intergenic |
| ATTAGCTCTTCGAGCAGGCG+AGG | 0.583437 | 2:-34201532 | None:intergenic |
| GCAGCATCCTGCACTAGTGA+AGG | 0.585446 | 2:+34201296 | MsG0280008574.01.T01:CDS |
| TATTATGTACAGCAAAGTCA+TGG | 0.589343 | 2:+34201128 | MsG0280008574.01.T01:intron |
| ACATGGAAATTCCAGTTCGA+AGG | 0.590375 | 2:+34201175 | MsG0280008574.01.T01:CDS |
| TTACCTGTCTGCCATCAGGA+TGG | 0.619728 | 2:-34200386 | None:intergenic |
| ATATTGACGGGGCATCTGGT+GGG | 0.625988 | 2:+34200856 | MsG0280008574.01.T01:CDS |
| ATGCCCCGTCAATATTCAGA+AGG | 0.627712 | 2:-34200848 | None:intergenic |
| CCTGCTCGAAGAGCTAATGA+AGG | 0.628255 | 2:+34201537 | MsG0280008574.01.T01:CDS |
| TAGACAACAGCAATGACCAA+TGG | 0.666183 | 2:-34200918 | None:intergenic |
| CTTCTGAAGAGGTTCATCAT+CGG | 0.667489 | 2:-34201199 | None:intergenic |
| ATTCCTTCTGAATATTGACG+GGG | 0.690285 | 2:+34200845 | MsG0280008574.01.T01:CDS |
| AGTCATGGATGTCTTCACAA+AGG | 0.701337 | 2:+34201143 | MsG0280008574.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAGAATAATCTATT+TGG | - | Chr2:34201346-34201365 | None:intergenic | 10.0% |
| !!! | ATAGATTATTCTTTTTTTAT+TGG | + | Chr2:34201347-34201366 | MsG0280008574.01.T01:intron | 10.0% |
| !!! | ATATTCTTTTTTTTCAAATT+TGG | + | Chr2:34201050-34201069 | MsG0280008574.01.T01:intron | 10.0% |
| !!! | TAGATTATTCTTTTTTTATT+GGG | + | Chr2:34201348-34201367 | MsG0280008574.01.T01:intron | 10.0% |
| !!! | TATTCTTTTTTTTCAAATTT+GGG | + | Chr2:34201051-34201070 | MsG0280008574.01.T01:intron | 10.0% |
| !! | CTGAAATAAAGAAAAAATAT+AGG | + | Chr2:34200129-34200148 | MsG0280008574.01.T01:CDS | 15.0% |
| !! | CTTGTATACTTTATTCTAAT+TGG | - | Chr2:34200676-34200695 | None:intergenic | 20.0% |
| !! | TAACAAGAATGAAAGATAAA+TGG | - | Chr2:34201089-34201108 | None:intergenic | 20.0% |
| !!! | ACTGTATTTTTGTTTGTATT+AGG | + | Chr2:34200429-34200448 | MsG0280008574.01.T01:intron | 20.0% |
| ! | AAAAACAATATCAGTTACAC+AGG | - | Chr2:34200262-34200281 | None:intergenic | 25.0% |
| ! | AATTCTTAACTGTGATTAAC+TGG | - | Chr2:34200575-34200594 | None:intergenic | 25.0% |
| ! | ACTGAAATGCATAAAAAGTT+AGG | - | Chr2:34200748-34200767 | None:intergenic | 25.0% |
| ! | CTGAAATGCATAAAAAGTTA+GGG | - | Chr2:34200747-34200766 | None:intergenic | 25.0% |
| ! | GTATTAGGAAAATATACAGT+GGG | + | Chr2:34200444-34200463 | MsG0280008574.01.T01:intron | 25.0% |
| ! | TCTAATCCAAGAATACTAAA+TGG | - | Chr2:34200092-34200111 | None:intergenic | 25.0% |
| ! | TGTATTAGGAAAATATACAG+TGG | + | Chr2:34200443-34200462 | MsG0280008574.01.T01:intron | 25.0% |
| ! | TTTGATCCATTTAGTATTCT+TGG | + | Chr2:34200083-34200102 | MsG0280008574.01.T01:CDS | 25.0% |
| !! | ATGTGGAATATTTTATTGCA+GGG | + | Chr2:34200795-34200814 | MsG0280008574.01.T01:intron | 25.0% |
| !! | TATGTGGAATATTTTATTGC+AGG | + | Chr2:34200794-34200813 | MsG0280008574.01.T01:intron | 25.0% |
| !!! | TTTTATTCGTTTTGTTTCAG+AGG | + | Chr2:34200278-34200297 | MsG0280008574.01.T01:intron | 25.0% |
| AATTCCTTCTGAATATTGAC+GGG | + | Chr2:34200844-34200863 | MsG0280008574.01.T01:CDS | 30.0% | |
| AGAATGAAAGATAAATGGTG+TGG | - | Chr2:34201084-34201103 | None:intergenic | 30.0% | |
| ATTGCACAAGAAATATACCT+AGG | - | Chr2:34201032-34201051 | None:intergenic | 30.0% | |
| CAATATTCAGAAGGAATTGA+GGG | - | Chr2:34200842-34200861 | None:intergenic | 30.0% | |
| CAATTCCTTCTGAATATTGA+CGG | + | Chr2:34200843-34200862 | MsG0280008574.01.T01:CDS | 30.0% | |
| CGTGAAAATTACGAGAAATA+TGG | + | Chr2:34200363-34200382 | MsG0280008574.01.T01:CDS | 30.0% | |
| CTTCATGAAGTAATAGTAAG+TGG | - | Chr2:34200997-34201016 | None:intergenic | 30.0% | |
| GAATGAAAGATAAATGGTGT+GGG | - | Chr2:34201083-34201102 | None:intergenic | 30.0% | |
| GAATTCAGTTAGTAACTGTT+AGG | + | Chr2:34200590-34200609 | MsG0280008574.01.T01:intron | 30.0% | |
| GTTTCTGATAGTTTACATTC+TGG | + | Chr2:34200766-34200785 | MsG0280008574.01.T01:intron | 30.0% | |
| TAAAAAGTTAGGGAAAGTGA+AGG | - | Chr2:34200737-34200756 | None:intergenic | 30.0% | |
| TATTATGTACAGCAAAGTCA+TGG | + | Chr2:34201128-34201147 | MsG0280008574.01.T01:intron | 30.0% | |
| TCAAGATCATCAAAGTATAC+CGG | + | Chr2:34200945-34200964 | MsG0280008574.01.T01:CDS | 30.0% | |
| TCAATATTCAGAAGGAATTG+AGG | - | Chr2:34200843-34200862 | None:intergenic | 30.0% | |
| TTATTGCAGGGATTTCAAAT+GGG | + | Chr2:34200807-34200826 | MsG0280008574.01.T01:intron | 30.0% | |
| TTGCACAAGAAATATACCTA+GGG | - | Chr2:34201031-34201050 | None:intergenic | 30.0% | |
| TTTATTGCAGGGATTTCAAA+TGG | + | Chr2:34200806-34200825 | MsG0280008574.01.T01:intron | 30.0% | |
| ! | AACATAAAAAGCTTCTGAAG+AGG | - | Chr2:34201213-34201232 | None:intergenic | 30.0% |
| ! | AGAAGCTTTTTATGTTGGTA+AGG | + | Chr2:34201217-34201236 | MsG0280008574.01.T01:CDS | 30.0% |
| ! | TCTTCAGAAGCTTTTTATGT+TGG | + | Chr2:34201212-34201231 | MsG0280008574.01.T01:CDS | 30.0% |
| !! | AGTGAAGGTATCTTATTGTA+TGG | + | Chr2:34201311-34201330 | MsG0280008574.01.T01:intron | 30.0% |
| !! | ATACTTTTGCTTTGGATTGT+TGG | + | Chr2:34200879-34200898 | MsG0280008574.01.T01:CDS | 30.0% |
| !!! | CCATGCTATTTTCTTTTAGA+CGG | + | Chr2:34201420-34201439 | MsG0280008574.01.T01:intron | 30.0% |
| AATGAGAAACTTCTTCAACC+TGG | - | Chr2:34200194-34200213 | None:intergenic | 35.0% | |
| ACTTAGGAAAAGGAAAGGAT+TGG | - | Chr2:34200502-34200521 | None:intergenic | 35.0% | |
| AGAGTACAGTGGTGTATTTA+TGG | - | Chr2:34200649-34200668 | None:intergenic | 35.0% | |
| ATGAGAAACTTCTTCAACCT+GGG | - | Chr2:34200193-34200212 | None:intergenic | 35.0% | |
| ATTCCTTCTGAATATTGACG+GGG | + | Chr2:34200845-34200864 | MsG0280008574.01.T01:CDS | 35.0% | |
| CAGAATTCTGACTTAGGAAA+AGG | - | Chr2:34200512-34200531 | None:intergenic | 35.0% | |
| CCGTCTAAAAGAAAATAGCA+TGG | - | Chr2:34201423-34201442 | None:intergenic | 35.0% | |
| CTGATAGTTTACATTCTGGT+GGG | + | Chr2:34200770-34200789 | MsG0280008574.01.T01:intron | 35.0% | |
| CTGTTAGGAATTCAGTTAGA+AGG | + | Chr2:34200605-34200624 | MsG0280008574.01.T01:intron | 35.0% | |
| CTTAGGAAAAGGAAAGGATT+GGG | - | Chr2:34200501-34200520 | None:intergenic | 35.0% | |
| CTTTAGCAAGTGATTTCAGA+CGG | + | Chr2:34201494-34201513 | MsG0280008574.01.T01:CDS | 35.0% | |
| GACTAACAGAATTCTGACTT+AGG | - | Chr2:34200518-34200537 | None:intergenic | 35.0% | |
| TCTGATAGTTTACATTCTGG+TGG | + | Chr2:34200769-34200788 | MsG0280008574.01.T01:intron | 35.0% | |
| TGATAGTTTACATTCTGGTG+GGG | + | Chr2:34200771-34200790 | MsG0280008574.01.T01:intron | 35.0% | |
| TGCACAAGAAATATACCTAG+GGG | - | Chr2:34201030-34201049 | None:intergenic | 35.0% | |
| TTACTTCATGAAGCCTTCTT+TGG | + | Chr2:34201004-34201023 | MsG0280008574.01.T01:CDS | 35.0% | |
| TTCTGACTTAGGAAAAGGAA+AGG | - | Chr2:34200507-34200526 | None:intergenic | 35.0% | |
| TTGATGCATCACATAGTTTC+CGG | - | Chr2:34200967-34200986 | None:intergenic | 35.0% | |
| ! | AAGGTATCTTATTGTATGGC+TGG | + | Chr2:34201315-34201334 | MsG0280008574.01.T01:intron | 35.0% |
| ! | AGTATTCTTGGATTAGAACC+TGG | + | Chr2:34200095-34200114 | MsG0280008574.01.T01:CDS | 35.0% |
| ! | CTGAAATCACTTGCTAAAGA+TGG | - | Chr2:34201493-34201512 | None:intergenic | 35.0% |
| !! | AAGTGATTTCAGACGGATTT+TGG | + | Chr2:34201501-34201520 | MsG0280008574.01.T01:CDS | 35.0% |
| ACATGGAAATTCCAGTTCGA+AGG | + | Chr2:34201175-34201194 | MsG0280008574.01.T01:CDS | 40.0% | |
| AGAATTCTGTTAGTCACTGC+TGG | + | Chr2:34200523-34200542 | MsG0280008574.01.T01:intron | 40.0% | |
| AGTCATGGATGTCTTCACAA+AGG | + | Chr2:34201143-34201162 | MsG0280008574.01.T01:CDS | 40.0% | |
| CAAGAACATTAAGCAAGAGC+AGG | + | Chr2:34201260-34201279 | MsG0280008574.01.T01:CDS | 40.0% | |
| GCTCTTGCTTAATGTTCTTG+AGG | - | Chr2:34201260-34201279 | None:intergenic | 40.0% | |
| TAAGATACCTTCACTAGTGC+AGG | - | Chr2:34201306-34201325 | None:intergenic | 40.0% | |
| TAGACAACAGCAATGACCAA+TGG | - | Chr2:34200921-34200940 | None:intergenic | 40.0% | |
| TATCTGCATTCTCTTGCCAT+TGG | + | Chr2:34200902-34200921 | MsG0280008574.01.T01:CDS | 40.0% | |
| TGGTGTATTTATGGTACAGC+TGG | - | Chr2:34200640-34200659 | None:intergenic | 40.0% | |
| TTTATTACCTGTCTGCCATC+AGG | - | Chr2:34200393-34200412 | None:intergenic | 40.0% | |
| ! | CTTCTGAAGAGGTTCATCAT+CGG | - | Chr2:34201202-34201221 | None:intergenic | 40.0% |
| ! | GGTCTGGATTTTTATCAGGA+TGG | - | Chr2:34200172-34200191 | None:intergenic | 40.0% |
| ! | TAATTGGCACAAGAGTACAG+TGG | - | Chr2:34200660-34200679 | None:intergenic | 40.0% |
| ! | TCGTAATTTTCACGAGCTAC+TGG | - | Chr2:34200357-34200376 | None:intergenic | 40.0% |
| AAACTTCTTCAACCTGGGTC+TGG | - | Chr2:34200188-34200207 | None:intergenic | 45.0% | |
| AAAGCCCAACTCCGAATACA+AGG | - | Chr2:34200476-34200495 | None:intergenic | 45.0% | |
| ACTGCCTTGTATTCGGAGTT+GGG | + | Chr2:34200469-34200488 | MsG0280008574.01.T01:intron | 45.0% | |
| AGGGAAAGTGAAGGAAAGAG+AGG | - | Chr2:34200728-34200747 | None:intergenic | 45.0% | |
| ATATACCTAGGGGCCAAAGA+AGG | - | Chr2:34201020-34201039 | None:intergenic | 45.0% | |
| ATGCCCCGTCAATATTCAGA+AGG | - | Chr2:34200851-34200870 | None:intergenic | 45.0% | |
| CACAAAGGCTGCTGAATACA+TGG | + | Chr2:34201158-34201177 | MsG0280008574.01.T01:CDS | 45.0% | |
| CCTGATAAAAATCCAGACCC+AGG | + | Chr2:34200173-34200192 | MsG0280008574.01.T01:CDS | 45.0% | |
| CTTTGTCGAGCACATTGCTA+AGG | + | Chr2:34200311-34200330 | MsG0280008574.01.T01:CDS | 45.0% | |
| GAGAAATATGGCCATCCTGA+TGG | + | Chr2:34200375-34200394 | MsG0280008574.01.T01:CDS | 45.0% | |
| GGGAAAGTGAAGGAAAGAGA+GGG | - | Chr2:34200727-34200746 | None:intergenic | 45.0% | |
| TTACATTCTGGTGGGGTATG+TGG | + | Chr2:34200778-34200797 | MsG0280008574.01.T01:intron | 45.0% | |
| TTGTATTCGGAGTTGGGCTT+TGG | + | Chr2:34200475-34200494 | MsG0280008574.01.T01:intron | 45.0% | |
| ! | AGGATGCTGCTTCCAAAACT+TGG | - | Chr2:34201286-34201305 | None:intergenic | 45.0% |
| ! | CCTGGGTCTGGATTTTTATC+AGG | - | Chr2:34200176-34200195 | None:intergenic | 45.0% |
| ! | CTGGTGGGATACTTTTGCTT+TGG | + | Chr2:34200871-34200890 | MsG0280008574.01.T01:CDS | 45.0% |
| !! | GCTCAGTTGACTCGTGAATT+TGG | + | Chr2:34201457-34201476 | MsG0280008574.01.T01:CDS | 45.0% |
| ATTTCAGACTCTGCTGCTCC+AGG | - | Chr2:34200116-34200135 | None:intergenic | 50.0% | |
| CAACTCCGAATACAAGGCAG+TGG | - | Chr2:34200470-34200489 | None:intergenic | 50.0% | |
| CACTGCCTTGTATTCGGAGT+TGG | + | Chr2:34200468-34200487 | MsG0280008574.01.T01:intron | 50.0% | |
| CCTGCTCGAAGAGCTAATGA+AGG | + | Chr2:34201537-34201556 | MsG0280008574.01.T01:CDS | 50.0% | |
| TCATCATCGGTCCTTCGAAC+TGG | - | Chr2:34201189-34201208 | None:intergenic | 50.0% | |
| TTACCTGTCTGCCATCAGGA+TGG | - | Chr2:34200389-34200408 | None:intergenic | 50.0% | |
| ! | AATATTGACGGGGCATCTGG+TGG | + | Chr2:34200855-34200874 | MsG0280008574.01.T01:CDS | 50.0% |
| ! | AGCAAGAGCAGGCCAAGTTT+TGG | + | Chr2:34201271-34201290 | MsG0280008574.01.T01:CDS | 50.0% |
| ! | ATATTGACGGGGCATCTGGT+GGG | + | Chr2:34200856-34200875 | MsG0280008574.01.T01:CDS | 50.0% |
| ! | CCTTCATTAGCTCTTCGAGC+AGG | - | Chr2:34201540-34201559 | None:intergenic | 50.0% |
| ! | CTGAATATTGACGGGGCATC+TGG | + | Chr2:34200852-34200871 | MsG0280008574.01.T01:CDS | 50.0% |
| GCAGCATCCTGCACTAGTGA+AGG | + | Chr2:34201296-34201315 | MsG0280008574.01.T01:CDS | 55.0% | |
| GTGGGCCACTGCCTTGTATT+CGG | + | Chr2:34200462-34200481 | MsG0280008574.01.T01:intron | 55.0% | |
| TGAAGCCTTCTTTGGCCCCT+AGG | + | Chr2:34201012-34201031 | MsG0280008574.01.T01:CDS | 55.0% | |
| ! | ATTAGCTCTTCGAGCAGGCG+AGG | - | Chr2:34201535-34201554 | None:intergenic | 55.0% |
| TGGCCATCCTGATGGCAGAC+AGG | + | Chr2:34200383-34200402 | MsG0280008574.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 34200068 | 34201570 | 34200068 | ID=MsG0280008574.01;Name=MsG0280008574.01 |
| Chr2 | mRNA | 34200068 | 34201570 | 34200068 | ID=MsG0280008574.01.T01;Parent=MsG0280008574.01;Name=MsG0280008574.01.T01;_AED=0.46;_eAED=0.47;_QI=0|1|0.6|1|1|1|5|0|253 |
| Chr2 | exon | 34200068 | 34200194 | 34200068 | ID=MsG0280008574.01.T01:exon:42293;Parent=MsG0280008574.01.T01 |
| Chr2 | exon | 34200298 | 34200404 | 34200298 | ID=MsG0280008574.01.T01:exon:42294;Parent=MsG0280008574.01.T01 |
| Chr2 | exon | 34200816 | 34201033 | 34200816 | ID=MsG0280008574.01.T01:exon:42295;Parent=MsG0280008574.01.T01 |
| Chr2 | exon | 34201140 | 34201317 | 34201140 | ID=MsG0280008574.01.T01:exon:42296;Parent=MsG0280008574.01.T01 |
| Chr2 | exon | 34201439 | 34201570 | 34201439 | ID=MsG0280008574.01.T01:exon:42297;Parent=MsG0280008574.01.T01 |
| Chr2 | CDS | 34200068 | 34200194 | 34200068 | ID=MsG0280008574.01.T01:cds;Parent=MsG0280008574.01.T01 |
| Chr2 | CDS | 34200298 | 34200404 | 34200298 | ID=MsG0280008574.01.T01:cds;Parent=MsG0280008574.01.T01 |
| Chr2 | CDS | 34200816 | 34201033 | 34200816 | ID=MsG0280008574.01.T01:cds;Parent=MsG0280008574.01.T01 |
| Chr2 | CDS | 34201140 | 34201317 | 34201140 | ID=MsG0280008574.01.T01:cds;Parent=MsG0280008574.01.T01 |
| Chr2 | CDS | 34201439 | 34201570 | 34201439 | ID=MsG0280008574.01.T01:cds;Parent=MsG0280008574.01.T01 |
| Gene Sequence |
| Protein sequence |
