AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013491.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013491.01.T01 MTR_3g449620 97.512 201 5 0 4 204 14 214 8.23e-143 407
MsG0380013491.01.T01 MTR_5g090300 82.828 198 34 0 5 202 15 212 2.77e-108 319
MsG0380013491.01.T01 MTR_3g064370 68.912 193 60 0 10 202 20 212 6.93e-96 284
MsG0380013491.01.T01 MTR_3g064370 68.912 193 60 0 10 202 20 212 3.64e-94 283
MsG0380013491.01.T01 MTR_3g064370 67.407 135 44 0 68 202 1 135 7.48e-62 198
MsG0380013491.01.T01 MTR_6g084700 30.653 199 111 5 19 202 221 407 8.99e-15 72.8
MsG0380013491.01.T01 MTR_3g113170 29.858 211 109 6 20 202 883 1082 1.15e-13 69.7
MsG0380013491.01.T01 MTR_3g113170 47.872 94 40 3 20 105 883 975 1.65e-13 68.9
MsG0380013491.01.T01 MTR_3g055090 29.534 193 112 7 19 202 160 337 2.20e-13 68.6
MsG0380013491.01.T01 MTR_1g023510 30.088 226 116 8 15 202 862 1083 2.68e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013491.01.T01 AT3G59050 83.598 189 31 0 14 202 25 213 4.76e-113 331
MsG0380013491.01.T01 AT2G43020 76.382 199 47 0 4 202 14 212 8.56e-102 303
MsG0380013491.01.T01 AT1G65840 64.851 202 67 1 5 202 12 213 1.28e-92 280
MsG0380013491.01.T01 AT3G10390 30.457 197 117 5 13 202 180 363 7.45e-16 75.9
MsG0380013491.01.T01 AT3G10390 29.187 209 122 6 7 202 168 363 7.65e-16 75.9
MsG0380013491.01.T01 AT3G10390 30.457 197 117 5 13 202 232 415 9.81e-16 75.5
MsG0380013491.01.T01 AT3G10390 30.457 197 117 5 13 202 232 415 1.04e-15 75.5
MsG0380013491.01.T01 AT4G16310 31.004 229 101 9 20 202 620 837 1.98e-14 71.6
MsG0380013491.01.T01 AT4G16310 31.004 229 101 9 20 202 620 837 1.98e-14 71.6
MsG0380013491.01.T01 AT4G16310 31.004 229 101 9 20 202 620 837 1.98e-14 71.6
MsG0380013491.01.T01 AT4G16310 31.004 229 101 9 20 202 620 837 1.98e-14 71.6
MsG0380013491.01.T01 AT4G16310 31.004 229 101 9 20 202 620 837 1.98e-14 71.6
MsG0380013491.01.T01 AT1G62830 30.890 191 117 5 18 202 266 447 5.04e-13 67.4

Find 68 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAGTAATAACCTTAATTC+TGG 0.235503 3:+39273172 None:intergenic
ACTTCAAGATGCTTCCTTTC+AGG 0.247076 3:-39276111 MsG0380013491.01.T01:intron
GTCATTGGTGGTGGCATGGC+TGG 0.253200 3:-39276152 MsG0380013491.01.T01:CDS
TGCTTCCGTGATTGGGAGGC+TGG 0.257155 3:-39273871 MsG0380013491.01.T01:CDS
TTGATAGGAATCCAGAATTA+AGG 0.262962 3:-39273183 MsG0380013491.01.T01:intron
AATACCACTGAAGTACCTTA+TGG 0.326701 3:+39273054 None:intergenic
AATCCACTTGCTTCCGTGAT+TGG 0.366361 3:-39273879 MsG0380013491.01.T01:CDS
TGTGCTATACGACCATGATT+TGG 0.368647 3:-39273814 MsG0380013491.01.T01:CDS
ATTCACACTGATTACTCGTT+TGG 0.376822 3:-39274061 MsG0380013491.01.T01:CDS
GTTTGGCTTTCCTGTTGACC+TGG 0.381528 3:-39274044 MsG0380013491.01.T01:CDS
CAGCTATGCACTTTATGATA+AGG 0.384844 3:-39273604 MsG0380013491.01.T01:CDS
CACCCTTGACTGCAGGTTGG+AGG 0.385422 3:-39273084 MsG0380013491.01.T01:intron
ACGAGTAATCAGTGTGAATT+CGG 0.387049 3:+39274065 None:intergenic
CCCTTGACTGCAGGTTGGAG+GGG 0.387852 3:-39273082 MsG0380013491.01.T01:intron
TCACCATCTGTTATTGTCAT+TGG 0.389191 3:-39276167 MsG0380013491.01.T01:CDS
ACCCTTGACTGCAGGTTGGA+GGG 0.394812 3:-39273083 MsG0380013491.01.T01:intron
ATCCACTTGCTTCCGTGATT+GGG 0.395016 3:-39273878 MsG0380013491.01.T01:CDS
CATGATGCTCCCAGGTCAAC+AGG 0.413656 3:+39274034 None:intergenic
GTTGGAGGGGCTTGCCCATA+AGG 0.416665 3:-39273069 MsG0380013491.01.T01:CDS
ATCCCCGCTAGTACGGTAAA+GGG 0.424450 3:+39273842 None:intergenic
TACAATTTCACTGAATGGTT+GGG 0.424536 3:-39272994 MsG0380013491.01.T01:CDS
GAATCAAGTTCCCCAGGAAT+TGG 0.428359 3:-39273577 MsG0380013491.01.T01:CDS
AATTGAAAGACCACGCTGTA+TGG 0.437376 3:+39273210 None:intergenic
GCTTCCGTGATTGGGAGGCT+GGG 0.440070 3:-39273870 MsG0380013491.01.T01:CDS
AGGTTGTTCTCTTAGAGTCT+AGG 0.441740 3:-39274102 MsG0380013491.01.T01:CDS
ATACCACTGAAGTACCTTAT+GGG 0.446467 3:+39273055 None:intergenic
TCTGATACAATTTCACTGAA+TGG 0.465141 3:-39272999 MsG0380013491.01.T01:CDS
ATACAATTTCACTGAATGGT+TGG 0.469296 3:-39272995 MsG0380013491.01.T01:CDS
TCATTGGTGGTGGCATGGCT+GGG 0.470492 3:-39276151 MsG0380013491.01.T01:CDS
CCATCTGTTATTGTCATTGG+TGG 0.476065 3:-39276164 MsG0380013491.01.T01:CDS
CTGTTTGTAGCTCTTTGCTA+TGG 0.477290 3:-39276215 MsG0380013491.01.T01:CDS
CAGGAATTGGTAACAAAAGT+TGG 0.495412 3:-39273564 MsG0380013491.01.T01:CDS
ATACATACCTTTCCAAATCA+TGG 0.498622 3:+39273802 None:intergenic
GGTTGTTCTCTTAGAGTCTA+GGG 0.501117 3:-39274101 MsG0380013491.01.T01:CDS
TACCCCTTTACCGTACTAGC+GGG 0.505173 3:-39273845 MsG0380013491.01.T01:CDS
TTCACTGAATGGTTGGGACC+AGG 0.505370 3:-39272988 MsG0380013491.01.T01:CDS
TTTGGCTTTCCTGTTGACCT+GGG 0.506960 3:-39274043 MsG0380013491.01.T01:CDS
TCAGTGGTATTTATGCAGAA+TGG 0.507222 3:-39273042 MsG0380013491.01.T01:CDS
TATCCCCGCTAGTACGGTAA+AGG 0.508104 3:+39273841 None:intergenic
GTTGATTTCTTTAAATTACC+TGG 0.511888 3:+39272970 None:intergenic
TCTGTTATTGTCATTGGTGG+TGG 0.517892 3:-39276161 MsG0380013491.01.T01:CDS
TATTGTCATTGGTGGTGGCA+TGG 0.522281 3:-39276156 MsG0380013491.01.T01:CDS
TATGCACTTTATGATAAGGA+TGG 0.523913 3:-39273600 MsG0380013491.01.T01:CDS
CAGAGTTATCCCCGCTAGTA+CGG 0.530155 3:+39273835 None:intergenic
CTTCCGTGATTGGGAGGCTG+GGG 0.536451 3:-39273869 MsG0380013491.01.T01:CDS
AAGGTTGCATGGAGTTTGCA+AGG 0.539925 3:-39273904 MsG0380013491.01.T01:CDS
TGGCAATGTTAGCAGTGTGC+AGG 0.541458 3:-39276195 MsG0380013491.01.T01:CDS
ATTTATGCAGAATGGAGGGC+TGG 0.545277 3:-39273034 MsG0380013491.01.T01:CDS
CACTTGCTTCCGTGATTGGG+AGG 0.546419 3:-39273875 MsG0380013491.01.T01:CDS
AGCTTTACCATGATGCTCCC+AGG 0.548394 3:+39274026 None:intergenic
GGATGGGAATCAAGTTCCCC+AGG 0.564440 3:-39273583 MsG0380013491.01.T01:CDS
GAGTCTAGGGAAAGACTTGG+TGG 0.566001 3:-39274088 MsG0380013491.01.T01:CDS
TAACCCCAGCCTCCCAATCA+CGG 0.581134 3:+39273866 None:intergenic
CTGTTGACCTGGGAGCATCA+TGG 0.583662 3:-39274033 MsG0380013491.01.T01:intron
ATGCACTTTATGATAAGGAT+GGG 0.585309 3:-39273599 MsG0380013491.01.T01:CDS
GTGGTATTTATGCAGAATGG+AGG 0.590217 3:-39273039 MsG0380013491.01.T01:CDS
ATGTTAGCAGTGTGCAGGAG+AGG 0.596273 3:-39276190 MsG0380013491.01.T01:CDS
ATTGAGGTCAAATACCTGAA+AGG 0.606411 3:+39276097 None:intergenic
TGGTATTTATGCAGAATGGA+GGG 0.621034 3:-39273038 MsG0380013491.01.T01:CDS
TATACGACCATGATTTGGAA+AGG 0.638994 3:-39273809 MsG0380013491.01.T01:intron
CTCCCAATCACGGAAGCAAG+TGG 0.641232 3:+39273876 None:intergenic
CCACCAATGACAATAACAGA+TGG 0.652194 3:+39276164 None:intergenic
ACCCCTTTACCGTACTAGCG+GGG 0.654223 3:-39273844 MsG0380013491.01.T01:CDS
TCCCCGCTAGTACGGTAAAG+GGG 0.654597 3:+39273843 None:intergenic
TTACCCCTTTACCGTACTAG+CGG 0.655262 3:-39273846 MsG0380013491.01.T01:CDS
TTAGAGTCTAGGGAAAGACT+TGG 0.664498 3:-39274091 MsG0380013491.01.T01:CDS
TTGCCCATAAGGTACTTCAG+TGG 0.691649 3:-39273058 MsG0380013491.01.T01:CDS
GAAGATATGTCCATACAGCG+TGG 0.743255 3:-39273220 MsG0380013491.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAATAAGAAATAAAAA+AGG + Chr3:39274524-39274543 None:intergenic 10.0%
!! GAAAAATAAGAAATAAAAAA+GGG + Chr3:39274523-39274542 None:intergenic 10.0%
!!! AAAAAAATTGAAATTTTAGT+TGG + Chr3:39275495-39275514 None:intergenic 10.0%
!! GATTCATAAAAATAAATACA+AGG + Chr3:39274553-39274572 None:intergenic 15.0%
!! TGATAATAAAAAAGGTTATT+TGG - Chr3:39275805-39275824 MsG0380013491.01.T01:intron 15.0%
!! TTGCATTGAAATTTATAATT+CGG - Chr3:39274371-39274390 MsG0380013491.01.T01:intron 15.0%
!!! CCATTTATTTTCTTATTAAA+AGG - Chr3:39275250-39275269 MsG0380013491.01.T01:intron 15.0%
!!! CCTTTTAATAAGAAAATAAA+TGG + Chr3:39275253-39275272 None:intergenic 15.0%
!!! TCTAATTAAATGATTTTCAT+TGG - Chr3:39274178-39274197 MsG0380013491.01.T01:intron 15.0%
!!! TCTAATTAAATGATTTTCAT+TGG + Chr3:39274197-39274178 None:intergenic 15.0%
!! AATAATAAAGATGTAGGATA+TGG + Chr3:39273453-39273472 None:intergenic 20.0%
!! AATACCTAAATTAAGAAATG+TGG - Chr3:39274091-39274110 MsG0380013491.01.T01:CDS 20.0%
!! ATACCTAAATTAAGAAATGT+GGG - Chr3:39274092-39274111 MsG0380013491.01.T01:CDS 20.0%
!! TAAAACAAATAACTACTTTC+AGG + Chr3:39274892-39274911 None:intergenic 20.0%
!! TAAAACTATAGCTCTTATAA+GGG - Chr3:39274455-39274474 MsG0380013491.01.T01:intron 20.0%
!! TCAGTCTATTCTAATTAAAA+TGG - Chr3:39274228-39274247 MsG0380013491.01.T01:intron 20.0%
!! TCATCTTAAGTGTTAAAAAA+AGG - Chr3:39273397-39273416 MsG0380013491.01.T01:intron 20.0%
!! TGCATTGAAATTTATAATTC+GGG - Chr3:39274372-39274391 MsG0380013491.01.T01:intron 20.0%
!!! AGTATTTGAAACTATTTTAC+TGG - Chr3:39275657-39275676 MsG0380013491.01.T01:intron 20.0%
!!! ATAGACAATTCTTTTTCAAT+GGG - Chr3:39273967-39273986 MsG0380013491.01.T01:intron 20.0%
!!! CTTTATTATTAGCCTAAAAA+GGG - Chr3:39273463-39273482 MsG0380013491.01.T01:intron 20.0%
!!! GGAAAAAAATATTTTTACTG+TGG + Chr3:39275849-39275868 None:intergenic 20.0%
!!! TATAGACAATTCTTTTTCAA+TGG - Chr3:39273966-39273985 MsG0380013491.01.T01:intron 20.0%
!!! TCTTATTTAGTCTTGATATT+TGG - Chr3:39275693-39275712 MsG0380013491.01.T01:intron 20.0%
!!! TCTTTATTATTAGCCTAAAA+AGG - Chr3:39273462-39273481 MsG0380013491.01.T01:intron 20.0%
!!! TTCTGGTTTGATAATAAAAA+AGG - Chr3:39275797-39275816 MsG0380013491.01.T01:intron 20.0%
!!! TTTTTTTTAATTGTTTGGTC+AGG - Chr3:39275073-39275092 MsG0380013491.01.T01:intron 20.0%
! AAAGGGCAAAAAAATCAAAA+TGG + Chr3:39273836-39273855 None:intergenic 25.0%
! AAATTAAGAAATGTGGGATA+TGG - Chr3:39274098-39274117 MsG0380013491.01.T01:CDS 25.0%
! AACCAAGTACAAAATTTCAA+AGG + Chr3:39275920-39275939 None:intergenic 25.0%
! AATGCATATTAATTGACTAC+AGG + Chr3:39275023-39275042 None:intergenic 25.0%
! AGACTATTAATCTTACTTGT+TGG - Chr3:39273626-39273645 MsG0380013491.01.T01:intron 25.0%
! ATACAAATTGCATAGTTTCA+TGG + Chr3:39273934-39273953 None:intergenic 25.0%
! GCAAAAAAATCAAAATGGTA+TGG + Chr3:39273831-39273850 None:intergenic 25.0%
! GCTCATAAATCAAAATATTG+AGG + Chr3:39273117-39273136 None:intergenic 25.0%
! GTAAAACTATAGCTCTTATA+AGG - Chr3:39274454-39274473 MsG0380013491.01.T01:intron 25.0%
! GTCTATTCTAATTAAAATGG+TGG - Chr3:39274231-39274250 MsG0380013491.01.T01:intron 25.0%
! GTTTACTACAAATGATTGTT+AGG - Chr3:39275715-39275734 MsG0380013491.01.T01:intron 25.0%
! TACATGCAACAATTGAATTT+AGG - Chr3:39274487-39274506 MsG0380013491.01.T01:intron 25.0%
! TAGGCTAATAATAAAGATGT+AGG + Chr3:39273459-39273478 None:intergenic 25.0%
! TATCCCACATTTCTTAATTT+AGG + Chr3:39274098-39274117 None:intergenic 25.0%
!! ACAAATGATTGTTAGGTTTT+GGG - Chr3:39275722-39275741 MsG0380013491.01.T01:intron 25.0%
!! ACATATAATACCTTTTACGT+TGG + Chr3:39275536-39275555 None:intergenic 25.0%
!! AGGCTTTTGTAAAGTAAAAA+GGG + Chr3:39273853-39273872 None:intergenic 25.0%
!! CAATTTTGTAATCCCTTTTT+AGG + Chr3:39273478-39273497 None:intergenic 25.0%
!! TAATTAAAATGGTGGAAATC+TGG - Chr3:39274239-39274258 MsG0380013491.01.T01:intron 25.0%
!! TACAAATGATTGTTAGGTTT+TGG - Chr3:39275721-39275740 MsG0380013491.01.T01:intron 25.0%
!! TTTCCTTTTATATTTGCTTG+AGG - Chr3:39274864-39274883 MsG0380013491.01.T01:intron 25.0%
!!! AACCTTTGAAATTTTGTACT+TGG - Chr3:39275915-39275934 MsG0380013491.01.T01:intron 25.0%
!!! ACTTGTATGAAAACTAGTTT+TGG - Chr3:39274028-39274047 MsG0380013491.01.T01:intron 25.0%
!!! ATTTGAAACTATTTTACTGG+AGG - Chr3:39275660-39275679 MsG0380013491.01.T01:intron 25.0%
!!! GTCTTTCAATTGTTTTTGAT+AGG - Chr3:39275997-39276016 MsG0380013491.01.T01:intron 25.0%
!!! TAGACAATTCTTTTTCAATG+GGG - Chr3:39273968-39273987 MsG0380013491.01.T01:intron 25.0%
!!! TATGAAAACTAGTTTTGGAA+TGG - Chr3:39274033-39274052 MsG0380013491.01.T01:intron 25.0%
AAACATCAGAAGAGATGATT+TGG + Chr3:39275870-39275889 None:intergenic 30.0%
ACCTTGCAATTAAATCCAAA+AGG + Chr3:39273590-39273609 None:intergenic 30.0%
AGCTCCAAGTTTCAAATATT+AGG + Chr3:39274988-39275007 None:intergenic 30.0%
ATACAATTTCACTGAATGGT+TGG - Chr3:39276200-39276219 MsG0380013491.01.T01:CDS 30.0%
ATACATACCTTTCCAAATCA+TGG + Chr3:39275396-39275415 None:intergenic 30.0%
ATCAGCAAGTTATCTAATCT+TGG + Chr3:39273690-39273709 None:intergenic 30.0%
ATGCACTTTATGATAAGGAT+GGG - Chr3:39275596-39275615 MsG0380013491.01.T01:intron 30.0%
CGTTGGATAAAACTAGAAAA+AGG + Chr3:39275519-39275538 None:intergenic 30.0%
GATTGCAATTATCCGTTAAT+GGG - Chr3:39273222-39273241 MsG0380013491.01.T01:CDS 30.0%
GCTCCAAGTTTCAAATATTA+GGG + Chr3:39274987-39275006 None:intergenic 30.0%
GGAGTTCTTGACAAAAAAAA+TGG + Chr3:39273569-39273588 None:intergenic 30.0%
GTTCCTCAAGCAAATATAAA+AGG + Chr3:39274870-39274889 None:intergenic 30.0%
TACAATTTCACTGAATGGTT+GGG - Chr3:39276201-39276220 MsG0380013491.01.T01:CDS 30.0%
TACTAAGAATTTGATGTGAG+TGG - Chr3:39274270-39274289 MsG0380013491.01.T01:intron 30.0%
TATGCACTTTATGATAAGGA+TGG - Chr3:39275595-39275614 MsG0380013491.01.T01:intron 30.0%
TCCAGAATTAAGGTTATTAC+TGG - Chr3:39276022-39276041 MsG0380013491.01.T01:intron 30.0%
TCTGATACAATTTCACTGAA+TGG - Chr3:39276196-39276215 MsG0380013491.01.T01:CDS 30.0%
TGATTGCAATTATCCGTTAA+TGG - Chr3:39273221-39273240 MsG0380013491.01.T01:CDS 30.0%
TGGATTTAATTGCAAGGTAA+TGG - Chr3:39273592-39273611 MsG0380013491.01.T01:CDS 30.0%
TTACTTTACAAAAGCCTCTA+GGG - Chr3:39273856-39273875 MsG0380013491.01.T01:CDS 30.0%
TTGATAGGAATCCAGAATTA+AGG - Chr3:39276012-39276031 MsG0380013491.01.T01:intron 30.0%
TTTACTTTACAAAAGCCTCT+AGG - Chr3:39273855-39273874 MsG0380013491.01.T01:CDS 30.0%
! AACTTTTGTTACCAATTCCT+GGG + Chr3:39275632-39275651 None:intergenic 30.0%
! AATATGCATTTTCAGAGTCA+AGG - Chr3:39275033-39275052 MsG0380013491.01.T01:intron 30.0%
! ATATGCATTTTCAGAGTCAA+GGG - Chr3:39275034-39275053 MsG0380013491.01.T01:intron 30.0%
! CAAATGATTGTTAGGTTTTG+GGG - Chr3:39275723-39275742 MsG0380013491.01.T01:intron 30.0%
! GAGGCTTTTGTAAAGTAAAA+AGG + Chr3:39273854-39273873 None:intergenic 30.0%
! GATACTTGCTAGTTTAGATT+TGG - Chr3:39274409-39274428 MsG0380013491.01.T01:intron 30.0%
! GTCGTTTCTTATTTAGTAAC+TGG - Chr3:39274796-39274815 MsG0380013491.01.T01:intron 30.0%
! GTTCCCTAATATTTGAAACT+TGG - Chr3:39274981-39275000 MsG0380013491.01.T01:intron 30.0%
! TCCTTTTGGATTTAATTGCA+AGG - Chr3:39273586-39273605 MsG0380013491.01.T01:CDS 30.0%
! TTTTTGTCAAGAACTCCTTT+TGG - Chr3:39273572-39273591 MsG0380013491.01.T01:CDS 30.0%
!! ATACATATTTTTGTAGCCTG+TGG - Chr3:39274821-39274840 MsG0380013491.01.T01:intron 30.0%
!! CTAGTTTTCATACAAGTTGA+AGG + Chr3:39274025-39274044 None:intergenic 30.0%
!!! CTAGTTTTATCCAACGTAAA+AGG - Chr3:39275523-39275542 MsG0380013491.01.T01:intron 30.0%
!!! GAACACTTTTTTCCTGTTTA+AGG - Chr3:39275272-39275291 MsG0380013491.01.T01:intron 30.0%
!!! TGTGATTTTTTTTCCTGCTT+TGG - Chr3:39274332-39274351 MsG0380013491.01.T01:intron 30.0%
AAACCAGAAATGTAGTGCAA+AGG + Chr3:39275786-39275805 None:intergenic 35.0%
ACGAGTAATCAGTGTGAATT+CGG + Chr3:39275133-39275152 None:intergenic 35.0%
ATGTAGGATATGGCAGTTAT+TGG + Chr3:39273443-39273462 None:intergenic 35.0%
ATTGAGGTCAAATACCTGAA+AGG + Chr3:39273101-39273120 None:intergenic 35.0%
ATTTCATCATTGAGGCAATC+AGG + Chr3:39274915-39274934 None:intergenic 35.0%
CAATTATCCGTTAATGGGAT+TGG - Chr3:39273227-39273246 MsG0380013491.01.T01:CDS 35.0%
CAGCTATGCACTTTATGATA+AGG - Chr3:39275591-39275610 MsG0380013491.01.T01:intron 35.0%
CCGCTTAAAGAAAACAATCA+CGG + Chr3:39276071-39276090 None:intergenic 35.0%
CTTATCATAAAGTGCATAGC+TGG + Chr3:39275593-39275612 None:intergenic 35.0%
GCAAACACATGAATTACTGT+CGG + Chr3:39274575-39274594 None:intergenic 35.0%
GCCAGTAATAACCTTAATTC+TGG + Chr3:39276026-39276045 None:intergenic 35.0%
GTAGAGAACATATAAACCAC+AGG + Chr3:39274840-39274859 None:intergenic 35.0%
GTTATCTAATCTTGGAGCAT+TGG + Chr3:39273682-39273701 None:intergenic 35.0%
TAAAGTGCATAGCTGGAATA+AGG + Chr3:39275586-39275605 None:intergenic 35.0%
TCACCATCTGTTATTGTCAT+TGG - Chr3:39273028-39273047 MsG0380013491.01.T01:CDS 35.0%
TCAGTGGTATTTATGCAGAA+TGG - Chr3:39276153-39276172 MsG0380013491.01.T01:CDS 35.0%
TCCACTTCATTTCATCATTG+AGG + Chr3:39274923-39274942 None:intergenic 35.0%
TGCATGATTCCTAAAAAGGA+GGG + Chr3:39274759-39274778 None:intergenic 35.0%
TGGTATTTATGCAGAATGGA+GGG - Chr3:39276157-39276176 MsG0380013491.01.T01:CDS 35.0%
TGTTATCTACTATGCAAGTG+TGG + Chr3:39275452-39275471 None:intergenic 35.0%
! AATACCACTGAAGTACCTTA+TGG + Chr3:39276144-39276163 None:intergenic 35.0%
! ACTTTTGTTACCAATTCCTG+GGG + Chr3:39275631-39275650 None:intergenic 35.0%
! ATACCACTGAAGTACCTTAT+GGG + Chr3:39276143-39276162 None:intergenic 35.0%
! ATTCACACTGATTACTCGTT+TGG - Chr3:39275134-39275153 MsG0380013491.01.T01:intron 35.0%
! CAACTTTTGTTACCAATTCC+TGG + Chr3:39275633-39275652 None:intergenic 35.0%
! CAGGAATTGGTAACAAAAGT+TGG - Chr3:39275631-39275650 MsG0380013491.01.T01:intron 35.0%
! CCGTGATTGTTTTCTTTAAG+CGG - Chr3:39276068-39276087 MsG0380013491.01.T01:intron 35.0%
! TATACGACCATGATTTGGAA+AGG - Chr3:39275386-39275405 MsG0380013491.01.T01:intron 35.0%
!! ACTTCATGACTTGCATTTTG+GGG + Chr3:39274597-39274616 None:intergenic 35.0%
!! CACTTCATGACTTGCATTTT+GGG + Chr3:39274598-39274617 None:intergenic 35.0%
!! TACATAAGAGCACTTTCTCT+TGG + Chr3:39273893-39273912 None:intergenic 35.0%
!! TTTTCCTGTTTAAGGTTGCA+TGG - Chr3:39275280-39275299 MsG0380013491.01.T01:intron 35.0%
AAACTAGCAAGTATCACCCA+GGG + Chr3:39274404-39274423 None:intergenic 40.0%
AACTCCATGCAACCTTAAAC+AGG + Chr3:39275287-39275306 None:intergenic 40.0%
AATTGAAAGACCACGCTGTA+TGG + Chr3:39275988-39276007 None:intergenic 40.0%
ACTTCAAGATGCTTCCTTTC+AGG - Chr3:39273084-39273103 MsG0380013491.01.T01:intron 40.0%
AGATCTCGATTAGAAGATCG+AGG + Chr3:39273269-39273288 None:intergenic 40.0%
AGGTTGTTCTCTTAGAGTCT+AGG - Chr3:39275093-39275112 MsG0380013491.01.T01:intron 40.0%
ATGCCTTTGCACTACATTTC+TGG - Chr3:39275780-39275799 MsG0380013491.01.T01:intron 40.0%
ATGTGGGATATGGCAGTTAT+TGG - Chr3:39274108-39274127 MsG0380013491.01.T01:intron 40.0%
CATTCAGCCAATCCCATTAA+CGG + Chr3:39273237-39273256 None:intergenic 40.0%
CCAAAATGCAAGTCATGAAG+TGG - Chr3:39274596-39274615 MsG0380013491.01.T01:intron 40.0%
CCACCAATGACAATAACAGA+TGG + Chr3:39273034-39273053 None:intergenic 40.0%
CCATCTGTTATTGTCATTGG+TGG - Chr3:39273031-39273050 MsG0380013491.01.T01:CDS 40.0%
CTCAGACATTCAAAACAAGG+AGG + Chr3:39273544-39273563 None:intergenic 40.0%
CTGTTTGTAGCTCTTTGCTA+TGG - Chr3:39272980-39272999 MsG0380013491.01.T01:CDS 40.0%
GACATTCAAAACAAGGAGGT+CGG + Chr3:39273540-39273559 None:intergenic 40.0%
GAGCTCAGACATTCAAAACA+AGG + Chr3:39273547-39273566 None:intergenic 40.0%
GATCTCGATTAGAAGATCGA+GGG + Chr3:39273268-39273287 None:intergenic 40.0%
GCCTCAATGATGAAATGAAG+TGG - Chr3:39274919-39274938 MsG0380013491.01.T01:intron 40.0%
GCTGTGCATGATTCCTAAAA+AGG + Chr3:39274763-39274782 None:intergenic 40.0%
GGTTGTTCTCTTAGAGTCTA+GGG - Chr3:39275094-39275113 MsG0380013491.01.T01:intron 40.0%
GTGCATGATTCCTAAAAAGG+AGG + Chr3:39274760-39274779 None:intergenic 40.0%
GTGGTATTTATGCAGAATGG+AGG - Chr3:39276156-39276175 MsG0380013491.01.T01:CDS 40.0%
TAAACTAGCAAGTATCACCC+AGG + Chr3:39274405-39274424 None:intergenic 40.0%
TCCTAAAAAGGAGGGAGATA+GGG + Chr3:39274751-39274770 None:intergenic 40.0%
TCTGTTATTGTCATTGGTGG+TGG - Chr3:39273034-39273053 MsG0380013491.01.T01:CDS 40.0%
TGTGCTATACGACCATGATT+TGG - Chr3:39275381-39275400 MsG0380013491.01.T01:intron 40.0%
TTACTGTGGAAATGCATAGC+AGG + Chr3:39275835-39275854 None:intergenic 40.0%
TTAGAGTCTAGGGAAAGACT+TGG - Chr3:39275104-39275123 MsG0380013491.01.T01:intron 40.0%
TTCCTAAAAAGGAGGGAGAT+AGG + Chr3:39274752-39274771 None:intergenic 40.0%
! AAGGCATCACTATAAGGTAG+AGG + Chr3:39275767-39275786 None:intergenic 40.0%
!! AAGAGCACTTTCTCTTGGTT+TGG + Chr3:39273888-39273907 None:intergenic 40.0%
!! AGTGCAAAGGCATCACTATA+AGG + Chr3:39275773-39275792 None:intergenic 40.0%
!! CCACTTCATGACTTGCATTT+TGG + Chr3:39274599-39274618 None:intergenic 40.0%
AAGGTTGCATGGAGTTTGCA+AGG - Chr3:39275291-39275310 MsG0380013491.01.T01:intron 45.0%
AATCCACTTGCTTCCGTGAT+TGG - Chr3:39275316-39275335 MsG0380013491.01.T01:intron 45.0%
ACAGTAGATTGAGCCAAAGC+AGG + Chr3:39274348-39274367 None:intergenic 45.0%
ATAATTCGGGAAGAGTCCCT+GGG - Chr3:39274385-39274404 MsG0380013491.01.T01:intron 45.0%
ATCCACTTGCTTCCGTGATT+GGG - Chr3:39275317-39275336 MsG0380013491.01.T01:intron 45.0%
ATTTATGCAGAATGGAGGGC+TGG - Chr3:39276161-39276180 MsG0380013491.01.T01:CDS 45.0%
CCTAAAAAGGAGGGAGATAG+GGG + Chr3:39274750-39274769 None:intergenic 45.0%
CTAAAAAGGAGGGAGATAGG+GGG + Chr3:39274749-39274768 None:intergenic 45.0%
GAAGATATGTCCATACAGCG+TGG - Chr3:39275975-39275994 MsG0380013491.01.T01:intron 45.0%
GAATCAAGTTCCCCAGGAAT+TGG - Chr3:39275618-39275637 MsG0380013491.01.T01:intron 45.0%
GGGAAAGAGAGAGAGACATT+AGG + Chr3:39273508-39273527 None:intergenic 45.0%
GTAGAGGAATCCAACTACGT+TGG + Chr3:39275751-39275770 None:intergenic 45.0%
TAAAAAGGAGGGAGATAGGG+GGG + Chr3:39274748-39274767 None:intergenic 45.0%
TATAATTCGGGAAGAGTCCC+TGG - Chr3:39274384-39274403 MsG0380013491.01.T01:intron 45.0%
TTACCCCTTTACCGTACTAG+CGG - Chr3:39275349-39275368 MsG0380013491.01.T01:intron 45.0%
! TTGCCCATAAGGTACTTCAG+TGG - Chr3:39276137-39276156 MsG0380013491.01.T01:CDS 45.0%
!! TATTGTCATTGGTGGTGGCA+TGG - Chr3:39273039-39273058 MsG0380013491.01.T01:CDS 45.0%
!! TGGTTTGGTTTAGACCCTAG+AGG + Chr3:39273873-39273892 None:intergenic 45.0%
!! TTTGGCTTTCCTGTTGACCT+GGG - Chr3:39275152-39275171 MsG0380013491.01.T01:intron 45.0%
!!! TTTTATTTTTTTTAATTGTT+TGG - Chr3:39275068-39275087 MsG0380013491.01.T01:intron 5.0%
AAGGAGGTCGGAGAAGGTTA+GGG + Chr3:39273528-39273547 None:intergenic 50.0%
AGCTTTACCATGATGCTCCC+AGG + Chr3:39275172-39275191 None:intergenic 50.0%
ATCCCCGCTAGTACGGTAAA+GGG + Chr3:39275356-39275375 None:intergenic 50.0%
ATGTTAGCAGTGTGCAGGAG+AGG - Chr3:39273005-39273024 MsG0380013491.01.T01:CDS 50.0%
CAAAACAAGGAGGTCGGAGA+AGG + Chr3:39273534-39273553 None:intergenic 50.0%
CAGAGTTATCCCCGCTAGTA+CGG + Chr3:39275363-39275382 None:intergenic 50.0%
GAGTCTAGGGAAAGACTTGG+TGG - Chr3:39275107-39275126 MsG0380013491.01.T01:intron 50.0%
TACCCCTTTACCGTACTAGC+GGG - Chr3:39275350-39275369 MsG0380013491.01.T01:intron 50.0%
TATCCCCGCTAGTACGGTAA+AGG + Chr3:39275357-39275376 None:intergenic 50.0%
TGATTTCCACCCTTGACTGC+AGG - Chr3:39276104-39276123 MsG0380013491.01.T01:intron 50.0%
TGGCAATGTTAGCAGTGTGC+AGG - Chr3:39273000-39273019 MsG0380013491.01.T01:CDS 50.0%
TTCACTGAATGGTTGGGACC+AGG - Chr3:39276207-39276226 MsG0380013491.01.T01:CDS 50.0%
! CCCCTATCTCCCTCCTTTTT+AGG - Chr3:39274747-39274766 MsG0380013491.01.T01:intron 50.0%
!! GTTTGGCTTTCCTGTTGACC+TGG - Chr3:39275151-39275170 MsG0380013491.01.T01:intron 50.0%
!!! TTTTGGGGTGCCAACGTAGT+TGG - Chr3:39275738-39275757 MsG0380013491.01.T01:intron 50.0%
ACCCCTTTACCGTACTAGCG+GGG - Chr3:39275351-39275370 MsG0380013491.01.T01:intron 55.0%
CAAGGAGGTCGGAGAAGGTT+AGG + Chr3:39273529-39273548 None:intergenic 55.0%
CACTTGCTTCCGTGATTGGG+AGG - Chr3:39275320-39275339 MsG0380013491.01.T01:intron 55.0%
CATGATGCTCCCAGGTCAAC+AGG + Chr3:39275164-39275183 None:intergenic 55.0%
CTCCCAATCACGGAAGCAAG+TGG + Chr3:39275322-39275341 None:intergenic 55.0%
GGATGGGAATCAAGTTCCCC+AGG - Chr3:39275612-39275631 MsG0380013491.01.T01:intron 55.0%
TAACCCCAGCCTCCCAATCA+CGG + Chr3:39275332-39275351 None:intergenic 55.0%
TCCCCGCTAGTACGGTAAAG+GGG + Chr3:39275355-39275374 None:intergenic 55.0%
TTCCACCCTTGACTGCAGGT+TGG - Chr3:39276108-39276127 MsG0380013491.01.T01:intron 55.0%
! ACCCTTGACTGCAGGTTGGA+GGG - Chr3:39276112-39276131 MsG0380013491.01.T01:CDS 55.0%
!! CTGTTGACCTGGGAGCATCA+TGG - Chr3:39275162-39275181 MsG0380013491.01.T01:intron 55.0%
!! TCATTGGTGGTGGCATGGCT+GGG - Chr3:39273044-39273063 MsG0380013491.01.T01:CDS 55.0%
CCCCTCCAACCTGCAGTCAA+GGG + Chr3:39276116-39276135 None:intergenic 60.0%
CTCCAACCTGCAGTCAAGGG+TGG + Chr3:39276113-39276132 None:intergenic 60.0%
CTTCCGTGATTGGGAGGCTG+GGG - Chr3:39275326-39275345 MsG0380013491.01.T01:intron 60.0%
GCTTCCGTGATTGGGAGGCT+GGG - Chr3:39275325-39275344 MsG0380013491.01.T01:intron 60.0%
GTTGGAGGGGCTTGCCCATA+AGG - Chr3:39276126-39276145 MsG0380013491.01.T01:CDS 60.0%
TGCTTCCGTGATTGGGAGGC+TGG - Chr3:39275324-39275343 MsG0380013491.01.T01:intron 60.0%
! CACCCTTGACTGCAGGTTGG+AGG - Chr3:39276111-39276130 MsG0380013491.01.T01:intron 60.0%
! CCCTTGACTGCAGGTTGGAG+GGG - Chr3:39276113-39276132 MsG0380013491.01.T01:CDS 60.0%
!! GTCATTGGTGGTGGCATGGC+TGG - Chr3:39273043-39273062 MsG0380013491.01.T01:CDS 60.0%
GCCCCTCCAACCTGCAGTCA+AGG + Chr3:39276117-39276136 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 39272980 39276237 39272980 ID=MsG0380013491.01;Name=MsG0380013491.01
Chr3 mRNA 39272980 39276237 39272980 ID=MsG0380013491.01.T01;Parent=MsG0380013491.01;Name=MsG0380013491.01.T01;_AED=0.45;_eAED=0.47;_QI=0|1|0.66|1|1|1|6|0|204
Chr3 exon 39276112 39276237 39276112 ID=MsG0380013491.01.T01:exon:14427;Parent=MsG0380013491.01.T01
Chr3 exon 39274034 39274122 39274034 ID=MsG0380013491.01.T01:exon:14426;Parent=MsG0380013491.01.T01
Chr3 exon 39273810 39273923 39273810 ID=MsG0380013491.01.T01:exon:14425;Parent=MsG0380013491.01.T01
Chr3 exon 39273536 39273623 39273536 ID=MsG0380013491.01.T01:exon:14424;Parent=MsG0380013491.01.T01
Chr3 exon 39273184 39273269 39273184 ID=MsG0380013491.01.T01:exon:14423;Parent=MsG0380013491.01.T01
Chr3 exon 39272980 39273091 39272980 ID=MsG0380013491.01.T01:exon:14422;Parent=MsG0380013491.01.T01
Chr3 CDS 39276112 39276237 39276112 ID=MsG0380013491.01.T01:cds;Parent=MsG0380013491.01.T01
Chr3 CDS 39274034 39274122 39274034 ID=MsG0380013491.01.T01:cds;Parent=MsG0380013491.01.T01
Chr3 CDS 39273810 39273923 39273810 ID=MsG0380013491.01.T01:cds;Parent=MsG0380013491.01.T01
Chr3 CDS 39273536 39273623 39273536 ID=MsG0380013491.01.T01:cds;Parent=MsG0380013491.01.T01
Chr3 CDS 39273184 39273269 39273184 ID=MsG0380013491.01.T01:cds;Parent=MsG0380013491.01.T01
Chr3 CDS 39272980 39273091 39272980 ID=MsG0380013491.01.T01:cds;Parent=MsG0380013491.01.T01
Gene Sequence

>MsG0380013491.01.T01

CTGTTTGTAGCTCTTTGCTATGGCAATGTTAGCAGTGTGCAGGAGAGGTCACCATCTGTTATTGTCATTGGTGGTGGCATGGCTGGGATTGCTGCTGCACGTGCACTTCAAGATGCTTCCTTTCAGGTTGTTCTCTTAGAGTCTAGGGAAAGACTTGGTGGCCGAATTCACACTGATTACTCGTTTGGCTTTCCTGTTGACCTGGGAGCATCATGGTTGCATGGAGTTTGCAAGGAGAATCCACTTGCTTCCGTGATTGGGAGGCTGGGGTTACCCCTTTACCGTACTAGCGGGGATAACTCTGTGCTATACGACCATGATTTGGAAAGCTATGCACTTTATGATAAGGATGGGAATCAAGTTCCCCAGGAATTGGTAACAAAAGTTGGTGAAGTATTTGAAACTATTTTACTGGAGACGAATAAAGTAAGAAGTGAATTCAATGAAGATATGTCCATACAGCGTGGTCTTTCAATTGTTTTTGATAGGAATCCAGAATTAAGGTTGGAGGGGCTTGCCCATAAGGTACTTCAGTGGTATTTATGCAGAATGGAGGGCTGGTTTGCTGCTGATTCTGATACAATTTCACTGAATGGTTGGGACCAGGTAATTTAA
Protein sequence

>MsG0380013491.01.T01

LFVALCYGNVSSVQERSPSVIVIGGGMAGIAAARALQDASFQVVLLESRERLGGRIHTDYSFGFPVDLGASWLHGVCKENPLASVIGRLGLPLYRTSGDNSVLYDHDLESYALYDKDGNQVPQELVTKVGEVFETILLETNKVRSEFNEDMSIQRGLSIVFDRNPELRLEGLAHKVLQWYLCRMEGWFAADSDTISLNGWDQVI*