AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014624.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014624.01.T01 MTR_3g461440 81.723 383 35 4 1 367 1 364 0.0 613
MsG0380014624.01.T01 MTR_3g461470 88.393 336 14 2 1 320 1 327 0.0 601
MsG0380014624.01.T01 MTR_3g061390 79.762 336 43 2 1 320 1 327 0.0 549
MsG0380014624.01.T01 MTR_3g461430 76.968 343 47 4 1 320 1 334 0.0 526
MsG0380014624.01.T01 MTR_5g096840 60.434 369 108 6 23 373 29 377 7.74e-144 422
MsG0380014624.01.T01 MTR_3g461440 78.862 246 33 3 122 367 1 227 4.66e-130 382
MsG0380014624.01.T01 MTR_3g088465 53.916 332 127 3 6 320 17 339 3.07e-123 367
MsG0380014624.01.T01 MTR_8g094290 54.630 324 120 3 15 320 23 337 1.01e-121 366
MsG0380014624.01.T01 MTR_3g088475 53.916 332 127 3 6 320 17 339 1.44e-121 365
MsG0380014624.01.T01 MTR_3g088455 53.474 331 129 2 6 320 17 338 3.13e-121 365
MsG0380014624.01.T01 MTR_1g029750 55.015 329 121 3 10 320 22 341 3.44e-121 365
MsG0380014624.01.T01 MTR_3g110660 52.047 342 131 4 4 320 8 341 6.91e-121 360
MsG0380014624.01.T01 MTR_3g110660 52.047 342 131 4 4 320 8 341 2.40e-119 360
MsG0380014624.01.T01 MTR_1g007380 51.543 324 130 3 16 320 16 331 1.99e-116 352
MsG0380014624.01.T01 MTR_4g073520 52.410 332 125 3 13 320 49 371 1.33e-114 349
MsG0380014624.01.T01 MTR_4g073520 52.410 332 125 3 13 320 49 371 2.35e-114 348
MsG0380014624.01.T01 MTR_3g461480 48.329 389 158 8 2 372 9 372 5.50e-114 345
MsG0380014624.01.T01 MTR_1g105980 49.263 339 138 5 7 320 1 330 2.88e-108 331
MsG0380014624.01.T01 MTR_3g096840 50.296 338 139 4 1 320 19 345 3.19e-107 329
MsG0380014624.01.T01 MTR_3g096800 46.175 366 157 4 16 363 26 369 4.46e-107 328
MsG0380014624.01.T01 MTR_1g105995 50.779 321 137 3 16 320 14 329 1.39e-106 327
MsG0380014624.01.T01 MTR_3g096830 51.524 328 130 4 11 320 14 330 1.77e-106 326
MsG0380014624.01.T01 MTR_1g105990 48.837 344 140 6 1 320 1 332 2.21e-105 323
MsG0380014624.01.T01 MTR_5g096850 51.746 315 126 3 23 320 25 330 3.17e-100 310
MsG0380014624.01.T01 MTR_1g106000 46.809 329 135 5 22 320 14 332 1.15e-96 301
MsG0380014624.01.T01 MTR_1g007270 45.938 320 148 3 17 320 27 337 2.26e-94 295
MsG0380014624.01.T01 MTR_3g110420 45.312 320 153 3 17 320 18 331 2.99e-94 290
MsG0380014624.01.T01 MTR_3g110420 43.620 337 167 4 1 320 1 331 2.00e-92 290
MsG0380014624.01.T01 MTR_1g007180 43.034 323 154 4 17 320 6 317 6.96e-88 278
MsG0380014624.01.T01 MTR_2g031750 43.827 324 152 6 16 320 5 317 5.96e-87 276
MsG0380014624.01.T01 MTR_1g007240 42.188 320 161 5 17 320 6 317 1.94e-84 269
MsG0380014624.01.T01 MTR_3g110430 44.410 322 151 4 17 320 55 366 4.50e-82 265
MsG0380014624.01.T01 MTR_5g017200 47.490 259 98 5 17 257 26 264 1.96e-71 229
MsG0380014624.01.T01 MTR_2g031750 41.016 256 121 6 84 320 6 250 2.30e-59 201
MsG0380014624.01.T01 MTR_1g007180 41.714 175 86 4 150 320 71 233 4.15e-40 149
MsG0380014624.01.T01 MTR_1g007190 44.872 156 79 4 34 184 21 174 1.05e-31 121
MsG0380014624.01.T01 MTR_7g038910 28.000 325 201 7 11 320 16 322 1.02e-27 114
MsG0380014624.01.T01 MTR_6g022790 28.205 312 193 6 22 320 41 334 1.49e-27 115
MsG0380014624.01.T01 MTR_7g038910 28.000 325 201 7 11 320 16 322 2.17e-27 114
MsG0380014624.01.T01 MTR_3g085820 27.389 314 193 7 22 320 32 325 2.51e-27 114
MsG0380014624.01.T01 MTR_4g103890 29.073 313 185 8 24 320 11 302 3.63e-27 114
MsG0380014624.01.T01 MTR_7g038910 28.000 325 201 7 11 320 16 322 1.24e-26 112
MsG0380014624.01.T01 MTR_0531s0020 29.139 302 179 7 34 320 60 341 9.25e-26 108
MsG0380014624.01.T01 MTR_6g023075 28.477 302 181 7 34 320 25 306 2.98e-25 108
MsG0380014624.01.T01 MTR_3g005740 27.619 315 195 5 22 320 51 348 3.90e-25 108
MsG0380014624.01.T01 MTR_6g023065 27.815 302 183 7 34 320 61 342 5.23e-25 108
MsG0380014624.01.T01 MTR_5g054730 29.560 318 192 8 16 320 20 318 5.91e-25 107
MsG0380014624.01.T01 MTR_2g101920 26.606 327 206 7 10 320 32 340 1.47e-24 107
MsG0380014624.01.T01 MTR_1g093020 29.052 327 194 8 10 320 12 316 3.26e-24 105
MsG0380014624.01.T01 MTR_6g022780 26.269 335 203 8 1 320 1 306 7.80e-24 104
MsG0380014624.01.T01 MTR_1g093020 29.052 327 194 8 10 320 12 316 1.03e-23 103
MsG0380014624.01.T01 MTR_1g093030 28.302 318 191 7 19 320 20 316 1.65e-22 100
MsG0380014624.01.T01 MTR_2g096830 27.302 315 194 7 21 320 12 306 2.81e-22 98.6
MsG0380014624.01.T01 MTR_8g080120 27.564 312 195 5 22 320 22 315 8.84e-22 98.2
MsG0380014624.01.T01 MTR_1g492640 24.752 303 189 10 34 317 70 352 1.91e-14 75.5
MsG0380014624.01.T01 MTR_1g492640 24.752 303 189 10 34 317 70 352 2.43e-14 75.9
MsG0380014624.01.T01 MTR_1g492640 24.752 303 189 10 34 317 52 334 2.73e-14 74.7
MsG0380014624.01.T01 MTR_1g070470 25.424 354 214 14 14 351 13 332 2.83e-14 75.5
MsG0380014624.01.T01 MTR_4g055610 26.421 299 185 12 34 315 51 331 3.82e-14 75.1
MsG0380014624.01.T01 MTR_4g075750 23.986 296 185 7 24 295 71 350 2.55e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014624.01.T01 AT1G77380 56.231 329 117 3 10 320 16 335 5.00e-126 377
MsG0380014624.01.T01 AT5G09220 56.347 323 114 3 16 320 38 351 7.76e-123 369
MsG0380014624.01.T01 AT5G63850 55.728 323 116 3 16 320 11 324 1.16e-120 363
MsG0380014624.01.T01 AT5G23810 58.951 324 105 4 19 323 21 335 2.16e-119 356
MsG0380014624.01.T01 AT1G44100 53.754 333 121 3 12 320 16 339 4.86e-118 357
MsG0380014624.01.T01 AT5G23810 58.879 321 104 4 19 320 21 332 1.09e-116 353
MsG0380014624.01.T01 AT1G10010 50.294 340 143 4 1 320 2 335 1.13e-115 350
MsG0380014624.01.T01 AT1G10010 50.294 340 143 4 1 320 1 334 1.23e-115 350
MsG0380014624.01.T01 AT1G58360 50.938 320 135 3 17 320 30 343 4.66e-111 339
MsG0380014624.01.T01 AT5G49630 49.850 333 139 4 8 320 17 341 2.61e-109 334
MsG0380014624.01.T01 AT5G23810 52.245 245 89 4 19 244 21 256 6.61e-76 241
MsG0380014624.01.T01 AT5G23810 52.062 194 74 3 19 193 21 214 1.87e-57 191
MsG0380014624.01.T01 AT5G23810 52.062 194 74 3 19 193 21 214 1.87e-57 191
MsG0380014624.01.T01 AT1G71680 29.487 312 190 6 22 320 33 327 2.57e-25 107
MsG0380014624.01.T01 AT1G71680 29.487 312 190 5 22 320 33 327 4.43e-24 105
MsG0380014624.01.T01 AT5G40780 26.282 312 199 6 22 320 32 325 8.33e-24 104
MsG0380014624.01.T01 AT1G61270 28.213 319 186 10 22 320 32 327 8.46e-23 101
MsG0380014624.01.T01 AT1G24400 26.000 300 191 6 34 320 39 320 9.72e-23 101
MsG0380014624.01.T01 AT5G40780 26.441 295 186 6 39 320 1 277 2.34e-21 96.7
MsG0380014624.01.T01 AT5G40780 26.441 295 186 6 39 320 1 277 2.34e-21 96.7
MsG0380014624.01.T01 AT3G01760 25.397 315 201 7 22 320 30 326 8.93e-21 95.5
MsG0380014624.01.T01 AT1G25530 27.301 326 206 6 8 320 12 319 1.03e-20 95.1
MsG0380014624.01.T01 AT1G67640 25.478 314 199 7 22 320 27 320 3.01e-20 94.0
MsG0380014624.01.T01 AT1G48640 25.321 312 202 6 22 320 39 332 2.10e-19 91.3

Find 131 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTACCCAAATAAAATTTA+AGG 0.135840 3:-57448048 None:intergenic
TGCAGAAAATGGAAGAATTA+TGG 0.189183 3:+57445616 MsG0380014624.01.T01:CDS
GTGTATCTTCTTCCTGTTAC+TGG 0.215238 3:+57447953 MsG0380014624.01.T01:CDS
TTGAATTTGAATCATATTCT+TGG 0.237090 3:+57444245 MsG0380014624.01.T01:five_prime_UTR
AGAAATCCTGATTCTGTAAC+TGG 0.252687 3:+57444609 MsG0380014624.01.T01:CDS
CATATCATCACAGCAGTTAT+TGG 0.260349 3:+57444465 MsG0380014624.01.T01:CDS
TGCTTTGGATATGCAGCTTT+TGG 0.275745 3:+57445944 MsG0380014624.01.T01:CDS
AATCGCTTTCTTGCAGAAAA+TGG 0.285740 3:+57445605 MsG0380014624.01.T01:CDS
CTTGGAACTTTGCGCTTTCA+AGG 0.292915 3:+57447725 MsG0380014624.01.T01:CDS
TTCTATAACAATCAGATAAA+AGG 0.296542 3:-57444590 None:intergenic
GGAAATCTCTTGACAGGGTT+TGG 0.296932 3:+57445980 MsG0380014624.01.T01:CDS
AAATTGGTTCAGGTAATAAA+AGG 0.299928 3:+57444772 MsG0380014624.01.T01:intron
TCATTTGGTTGGAGGATATC+AGG 0.300513 3:+57446054 MsG0380014624.01.T01:CDS
AGAGAATCAAACAATGAAAA+AGG 0.309261 3:+57445871 MsG0380014624.01.T01:CDS
TACCTATGTTGTGGTTGCTT+TGG 0.310192 3:+57445929 MsG0380014624.01.T01:CDS
TCCAGAATTGAAAACCATAT+TGG 0.313766 3:+57448234 MsG0380014624.01.T01:CDS
TCCTTTACATACTCATTCAT+TGG 0.319715 3:+57445439 MsG0380014624.01.T01:CDS
TCAAGAAGGATAATTGAATA+TGG 0.335571 3:-57445725 None:intergenic
GCCCCTTGGTTGGCCACATT+GGG 0.336864 3:+57447995 MsG0380014624.01.T01:CDS
ATCTTGAAACTCATCCAATA+TGG 0.336869 3:-57448248 None:intergenic
AGTTGAGACAGCAGAAAATC+AGG 0.337199 3:-57443743 None:intergenic
CTTCAAATTACAAAAGCTTC+TGG 0.337199 3:+57444292 MsG0380014624.01.T01:CDS
CTAAAGTTGCTGACAAAATC+TGG 0.337495 3:+57445663 MsG0380014624.01.T01:CDS
CAAAATCTGGTTAATCTTCC+AGG 0.338409 3:+57445676 MsG0380014624.01.T01:CDS
AACCCTGTCAAGAGATTTCC+TGG 0.353548 3:-57445977 None:intergenic
GCAGAAAATGGAAGAATTAT+GGG 0.355246 3:+57445617 MsG0380014624.01.T01:CDS
AGAATTATGGGAAGTATAAC+AGG 0.360907 3:+57445629 MsG0380014624.01.T01:CDS
CGCTCTTGGTGCCCCTTGGT+TGG 0.361021 3:+57447985 MsG0380014624.01.T01:CDS
AATTATCCTTCTTGAGATAC+AGG 0.364268 3:+57445733 MsG0380014624.01.T01:CDS
AGCGCAAAGTTCCAAGGCCT+TGG 0.364335 3:-57447718 None:intergenic
CAGTGGACAATGGTAAAATT+TGG 0.369003 3:-57448177 None:intergenic
ATTACCCAAATAAAATTTAA+GGG 0.369921 3:-57448047 None:intergenic
CTCAATATCACCACATTAAG+AGG 0.370962 3:+57448116 MsG0380014624.01.T01:CDS
ATCACAGCAGTTATTGGTTC+TGG 0.378445 3:+57444471 MsG0380014624.01.T01:CDS
GCGAAATCTGCACCAGTAAC+AGG 0.383889 3:-57447965 None:intergenic
TGTTTGTATTATCATTCATT+TGG 0.384293 3:+57446039 MsG0380014624.01.T01:CDS
TCTCAACTCTCAAGGAAATC+TGG 0.386517 3:+57443758 MsG0380014624.01.T01:five_prime_UTR
GCATGGAGTACTGCTCAATT+AGG 0.392253 3:+57444507 MsG0380014624.01.T01:CDS
TGCCCCTTGGTTGGCCACAT+TGG 0.395586 3:+57447994 MsG0380014624.01.T01:CDS
AATATATATATGGTGCTGTT+TGG 0.398778 3:+57445340 MsG0380014624.01.T01:CDS
ACTGGTGCAGATTTCGCTCT+TGG 0.402641 3:+57447971 MsG0380014624.01.T01:CDS
CTCAAGGGTTCCCAAGGCCT+TGG 0.411683 3:+57447707 MsG0380014624.01.T01:intron
GGATCTCCATAACTTGGCTT+GGG 0.421014 3:+57445393 MsG0380014624.01.T01:CDS
TGTATTATCATTCATTTGGT+TGG 0.421033 3:+57446043 MsG0380014624.01.T01:CDS
CTGAAACCCAAGCCAAGTTA+TGG 0.421752 3:-57445399 None:intergenic
CGCTTTCAAGGGTCTGTCCA+AGG 0.436363 3:+57447737 MsG0380014624.01.T01:CDS
CGGATCTCCATAACTTGGCT+TGG 0.438990 3:+57445392 MsG0380014624.01.T01:CDS
ATTGTTTGATTCTCTGGTGG+AGG 0.441973 3:-57445863 None:intergenic
AACTAATGTCACCAAGTGCC+TGG 0.445133 3:-57445694 None:intergenic
AGAATATGATTCAAATTCAA+TGG 0.447370 3:-57444242 None:intergenic
ATTGTCCACTGCACCTGCAC+TGG 0.451126 3:+57448189 MsG0380014624.01.T01:CDS
ATTTCGCTCTTGGTGCCCCT+TGG 0.451734 3:+57447981 MsG0380014624.01.T01:CDS
ATATGAGGCTAATATATATA+TGG 0.460365 3:+57445330 MsG0380014624.01.T01:CDS
CTCGATGGCGGTAACCTGAC+GGG 0.464089 3:-57448282 None:intergenic
GCACAACAAAGCAAGAAAAC+TGG 0.471757 3:-57444543 None:intergenic
GATGCTGTTAGAGTTAATCT+TGG 0.473459 3:+57444654 MsG0380014624.01.T01:CDS
TTCATTGTTTGATTCTCTGG+TGG 0.473763 3:-57445866 None:intergenic
ACACCAGGAAATCTCTTGAC+AGG 0.477743 3:+57445974 MsG0380014624.01.T01:CDS
CAATGCTCCTTGTAGATATG+AGG 0.477969 3:+57445315 MsG0380014624.01.T01:CDS
ATTATCATTCATTTGGTTGG+AGG 0.478152 3:+57446046 MsG0380014624.01.T01:CDS
ACTGCTCAATTAGGATGGAT+TGG 0.481783 3:+57444516 MsG0380014624.01.T01:CDS
TGAGCTTGTTGTGGCATACC+AGG 0.483034 3:-57448097 None:intergenic
CATACCGGATCTCCATAACT+TGG 0.488256 3:+57445387 MsG0380014624.01.T01:CDS
AAGTTCTCTGCAGGTTGGAT+TGG 0.493905 3:-57447839 None:intergenic
CAGGTTGGATTGGTAATTTG+AGG 0.494404 3:-57447829 None:intergenic
TTTAAAGTGTTGGTGGGGAA+TGG 0.494814 3:+57447860 MsG0380014624.01.T01:CDS
TTCTGCTGTCTCAACTCTCA+AGG 0.498417 3:+57443750 MsG0380014624.01.T01:five_prime_UTR
GTCCCAATGTGGCCAACCAA+GGG 0.501397 3:-57447997 None:intergenic
TGGTTAATCTTCCAGGCACT+TGG 0.501530 3:+57445683 MsG0380014624.01.T01:CDS
GCGCAAAGTTCCAAGGCCTT+GGG 0.504430 3:-57447717 None:intergenic
GACAGCAGAAAATCAGGAAA+AGG 0.505196 3:-57443737 None:intergenic
AACACTTTAAAGTTCTCTGC+AGG 0.511480 3:-57447848 None:intergenic
TTGAGGAAGTGTGCGATTCG+AGG 0.513020 3:-57447812 None:intergenic
GATTGTAATGTCGTTCATAC+CGG 0.514727 3:+57445372 MsG0380014624.01.T01:CDS
TTGGAACTTTGCGCTTTCAA+GGG 0.516228 3:+57447726 MsG0380014624.01.T01:CDS
TCCAATGAATGAGTATGTAA+AGG 0.518895 3:-57445440 None:intergenic
TGCAGAGAACTTTAAAGTGT+TGG 0.520018 3:+57447850 MsG0380014624.01.T01:CDS
CTTTAAAGTTCTCTGCAGGT+TGG 0.523227 3:-57447844 None:intergenic
GCAGATAAGAACATTTGCAT+TGG 0.525579 3:+57443700 MsG0380014624.01.T01:five_prime_UTR
AGAGAACTTTAAAGTGTTGG+TGG 0.527242 3:+57447853 MsG0380014624.01.T01:CDS
ATGAATGATAATACAAACAT+TGG 0.532293 3:-57446035 None:intergenic
CAAGCCAAGTTATGGAGATC+CGG 0.534080 3:-57445391 None:intergenic
GCAATGTCAATAAGCCAGTA+AGG 0.536074 3:-57446013 None:intergenic
GAAAAGAAACTACTCTTACA+TGG 0.536174 3:+57444632 MsG0380014624.01.T01:CDS
AAGGATAATTGAATATGGAT+AGG 0.542619 3:-57445720 None:intergenic
TCATTCATTGGACTAGGACT+TGG 0.543159 3:+57445451 MsG0380014624.01.T01:CDS
GAGAACTTTAAAGTGTTGGT+GGG 0.543400 3:+57447854 MsG0380014624.01.T01:CDS
AATAAAAGGACTTATGTGGC+TGG 0.543815 3:+57444786 MsG0380014624.01.T01:CDS
ACTCTCACCGGTGACAAACC+TGG 0.543887 3:+57448079 MsG0380014624.01.T01:CDS
ACATTCTTCTACCTATGTTG+TGG 0.547579 3:+57445920 MsG0380014624.01.T01:CDS
TCTGGTGCTTATGATGATGA+TGG 0.551479 3:+57444310 MsG0380014624.01.T01:CDS
CATTTCATCAATAGCATGAG+TGG 0.554154 3:-57448146 None:intergenic
CTTGTATTAGCGGAACGGAA+TGG 0.564902 3:-57448314 None:intergenic
GGTCCCAATGTGGCCAACCA+AGG 0.566718 3:-57447998 None:intergenic
AATAAGTTCATTACTCTCAC+CGG 0.567652 3:+57448067 MsG0380014624.01.T01:CDS
TCGAGGTTGAAGGAAGTTGT+CGG 0.569746 3:-57447795 None:intergenic
TGGCATACCAGGTTTGTCAC+CGG 0.570492 3:-57448086 None:intergenic
CCTCGATGGCGGTAACCTGA+CGG 0.570897 3:-57448283 None:intergenic
ACATACTCATTCATTGGACT+AGG 0.574709 3:+57445445 MsG0380014624.01.T01:CDS
GAAGATACACAGGTAACTGA+AGG 0.578113 3:-57447940 None:intergenic
GGAGTACTGCTCAATTAGGA+TGG 0.581347 3:+57444511 MsG0380014624.01.T01:CDS
AGGTAATAAAAGGACTTATG+TGG 0.583654 3:+57444782 MsG0380014624.01.T01:intron
AATGCACTCAAGGGTTCCCA+AGG 0.585525 3:+57447701 MsG0380014624.01.T01:intron
CTTGAAAGCGCAAAGTTCCA+AGG 0.586192 3:-57447724 None:intergenic
TCAAATTGTTATCACAAGGA+AGG 0.587729 3:+57445289 MsG0380014624.01.T01:CDS
CACCAGGAAATCTCTTGACA+GGG 0.588202 3:+57445975 MsG0380014624.01.T01:CDS
GAAATCCTGATTCTGTAACT+GGG 0.591659 3:+57444610 MsG0380014624.01.T01:CDS
GCTCAATTAGGATGGATTGG+AGG 0.591982 3:+57444519 MsG0380014624.01.T01:CDS
AAGGTACCTGTATCTCAAGA+AGG 0.593264 3:-57445739 None:intergenic
AGTGTGCGATTCGAGGTTGA+AGG 0.596974 3:-57447805 None:intergenic
AGTGCAGGTGCAGTGGACAA+TGG 0.598082 3:-57448187 None:intergenic
AGAACTTTAAAGTGTTGGTG+GGG 0.598228 3:+57447855 MsG0380014624.01.T01:CDS
AATGGTCATAGTCTCACAGC+AGG 0.602002 3:+57447878 MsG0380014624.01.T01:CDS
TGTAATGAAGATTGCAACCA+TGG 0.609614 3:-57445897 None:intergenic
AGATTTGTAGAGTAACACCT+TGG 0.616299 3:-57447754 None:intergenic
ATCCAAAGCAACCACAACAT+AGG 0.618276 3:-57445931 None:intergenic
TGGTGATATTGAGCTTGTTG+TGG 0.627788 3:-57448106 None:intergenic
GAGATCAAATTGTTATCACA+AGG 0.628087 3:+57445285 MsG0380014624.01.T01:CDS
ACTTCCTTGTATTAGCGGAA+CGG 0.636463 3:-57448319 None:intergenic
ATATTAGCCTCATATCTACA+AGG 0.637550 3:-57445322 None:intergenic
GAATGGTCTTGAAACCTCGA+TGG 0.647239 3:-57448297 None:intergenic
TCGATGGCGGTAACCTGACG+GGG 0.660622 3:-57448281 None:intergenic
CTACAAATCTTGCTTGACAG+TGG 0.661046 3:+57447767 MsG0380014624.01.T01:CDS
GCACTAAAATCTGCAATGTG+CGG 0.661764 3:-57448019 None:intergenic
TGGAATTTAACCTCTTAATG+TGG 0.671125 3:-57448126 None:intergenic
TCCCAATGTGGCCAACCAAG+GGG 0.672007 3:-57447996 None:intergenic
GTAACAGGAAGAAGATACAC+AGG 0.672718 3:-57447950 None:intergenic
TGGTCTTGAAACCTCGATGG+CGG 0.674783 3:-57448294 None:intergenic
AAGATACACAGGTAACTGAA+GGG 0.677059 3:-57447939 None:intergenic
CCGTCAGGTTACCGCCATCG+AGG 0.691884 3:+57448283 MsG0380014624.01.T01:CDS
TGCAATGTGCGGTCCCAATG+TGG 0.693068 3:-57448008 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+AGG - Chr3:57444098-57444079 None:intergenic 0.0%
!! AATAAAGTAAATCATTATTA+AGG - Chr3:57447096-57447115 None:intergenic 10.0%
!! ATAATATTTATCAATATGTT+AGG - Chr3:57443878-57443897 None:intergenic 10.0%
!! CACTAAAATTATTAAATAAA+TGG + Chr3:57446444-57446463 MsG0380014624.01.T01:intron 10.0%
!! TAATAATGATTTACTTTATT+TGG + Chr3:57447096-57447115 MsG0380014624.01.T01:intron 10.0%
!!! AATAATGATTTACTTTATTT+GGG + Chr3:57447097-57447116 MsG0380014624.01.T01:intron 10.0%
!!! ATTATTGTTTTTAATCTATA+TGG + Chr3:57446631-57446650 MsG0380014624.01.T01:intron 10.0%
!! ATTACCCAAATAAAATTTAA+GGG - Chr3:57448050-57448069 None:intergenic 15.0%
!! TATTACCCAAATAAAATTTA+AGG - Chr3:57448051-57448070 None:intergenic 15.0%
!! TGTATATGAAAAAAATGAAT+TGG - Chr3:57444390-57444409 None:intergenic 15.0%
!!! AATTACTAGTGAATTTTAAT+TGG - Chr3:57446099-57446118 None:intergenic 15.0%
!!! ATAATGATTTACTTTATTTG+GGG + Chr3:57447098-57447117 MsG0380014624.01.T01:intron 15.0%
!!! ATAGGTATTTAAGATATTTA+AGG + Chr3:57447171-57447190 MsG0380014624.01.T01:intron 15.0%
!!! ATATTTATTGTACGAATTTT+AGG + Chr3:57445111-57445130 MsG0380014624.01.T01:intron 15.0%
!!! ATTCATTTTTTTCATATACA+TGG + Chr3:57444390-57444409 MsG0380014624.01.T01:intron 15.0%
!!! ATTTCTGAAAAATAAAGTTT+GGG - Chr3:57447352-57447371 None:intergenic 15.0%
!!! TAGGTATTTAAGATATTTAA+GGG + Chr3:57447172-57447191 MsG0380014624.01.T01:intron 15.0%
!!! TATTTCTGAAAAATAAAGTT+TGG - Chr3:57447353-57447372 None:intergenic 15.0%
!!! TTAACCCTTAAATTTTATTT+GGG + Chr3:57448043-57448062 MsG0380014624.01.T01:CDS 15.0%
!!! TTTAACCCTTAAATTTTATT+TGG + Chr3:57448042-57448061 MsG0380014624.01.T01:CDS 15.0%
!!! TTTAATAATTTTAGTGAAGT+CGG - Chr3:57446440-57446459 None:intergenic 15.0%
!! AAAAGATTTATCTCAAAAGA+AGG - Chr3:57446777-57446796 None:intergenic 20.0%
!! AGAATATGATTCAAATTCAA+TGG - Chr3:57444245-57444264 None:intergenic 20.0%
!! ATAAACAACAAAGATAAACT+AGG - Chr3:57444179-57444198 None:intergenic 20.0%
!! ATAAATATGTATCATTAGCT+TGG - Chr3:57445099-57445118 None:intergenic 20.0%
!! ATATCAAACTTCAAATTTGT+TGG - Chr3:57447270-57447289 None:intergenic 20.0%
!! ATATGAGGCTAATATATATA+TGG + Chr3:57445330-57445349 MsG0380014624.01.T01:CDS 20.0%
!! ATATTTATCAATATGTTAGG+TGG - Chr3:57443875-57443894 None:intergenic 20.0%
!! ATCATATTCTTGGATAAAAA+TGG + Chr3:57444255-57444274 MsG0380014624.01.T01:exon 20.0%
!! ATGAATGATAATACAAACAT+TGG - Chr3:57446038-57446057 None:intergenic 20.0%
!! ATTTGAATATGAAAAGTCTA+AGG - Chr3:57445761-57445780 None:intergenic 20.0%
!! TAACAGTTATAACTTCAAAT+TGG + Chr3:57444756-57444775 MsG0380014624.01.T01:intron 20.0%
!! TGTTTGTATTATCATTCATT+TGG + Chr3:57446039-57446058 MsG0380014624.01.T01:CDS 20.0%
!! TTAAGTTATGATGAATCAAA+AGG - Chr3:57446144-57446163 None:intergenic 20.0%
!! TTATTGTACTAATGAATACA+GGG + Chr3:57445255-57445274 MsG0380014624.01.T01:intron 20.0%
!! TTCTATAACAATCAGATAAA+AGG - Chr3:57444593-57444612 None:intergenic 20.0%
!! TTGAATTTGAATCATATTCT+TGG + Chr3:57444245-57444264 MsG0380014624.01.T01:five_prime_UTR 20.0%
!! TTTATTGTACTAATGAATAC+AGG + Chr3:57445254-57445273 MsG0380014624.01.T01:intron 20.0%
!!! AATTTGAAGTTTGATATTGA+TGG + Chr3:57447273-57447292 MsG0380014624.01.T01:intron 20.0%
!!! ATTTGAAGTTATAACTGTTA+TGG - Chr3:57444756-57444775 None:intergenic 20.0%
!!! TAGTGAATTTTAATTGGTAA+GGG - Chr3:57446093-57446112 None:intergenic 20.0%
!!! TATGGACATTTAATAACTTT+TGG - Chr3:57443834-57443853 None:intergenic 20.0%
!!! TATTTAAGATATTTAAGGGA+TGG + Chr3:57447176-57447195 MsG0380014624.01.T01:intron 20.0%
! AAGGATAATTGAATATGGAT+AGG - Chr3:57445723-57445742 None:intergenic 25.0%
! AATTGTTGTGACAATTATTG+TGG - Chr3:57445533-57445552 None:intergenic 25.0%
! AGAGAATCAAACAATGAAAA+AGG + Chr3:57445871-57445890 MsG0380014624.01.T01:CDS 25.0%
! ATCATAAGTGAGAAAATTAG+TGG + Chr3:57447047-57447066 MsG0380014624.01.T01:intron 25.0%
! ATTCTTGGATAAAAATGGAT+GGG + Chr3:57444260-57444279 MsG0380014624.01.T01:exon 25.0%
! ATTGTTGTGACAATTATTGT+GGG - Chr3:57445532-57445551 None:intergenic 25.0%
! CAAATAACAAAACATAGCAT+AGG - Chr3:57446571-57446590 None:intergenic 25.0%
! TATTCTTGGATAAAAATGGA+TGG + Chr3:57444259-57444278 MsG0380014624.01.T01:exon 25.0%
! TATTGAATTATGTTGAGAAC+AGG + Chr3:57445826-57445845 MsG0380014624.01.T01:intron 25.0%
! TCAAGAAGGATAATTGAATA+TGG - Chr3:57445728-57445747 None:intergenic 25.0%
! TGTATTATCATTCATTTGGT+TGG + Chr3:57446043-57446062 MsG0380014624.01.T01:CDS 25.0%
! TTAATAAAAAGAACAGCACA+TGG - Chr3:57443965-57443984 None:intergenic 25.0%
! TTCATGTAATGTAATAGTAG+TGG + Chr3:57447132-57447151 MsG0380014624.01.T01:intron 25.0%
!! AAATTGGTTCAGGTAATAAA+AGG + Chr3:57444772-57444791 MsG0380014624.01.T01:intron 25.0%
!! ACTTCATTGAAACTTTTGAA+AGG + Chr3:57446260-57446279 MsG0380014624.01.T01:intron 25.0%
!! GACTTATTTCCTTTTCTTTT+AGG + Chr3:57444913-57444932 MsG0380014624.01.T01:intron 25.0%
!! TTATAACTTCAAATTGGTTC+AGG + Chr3:57444762-57444781 MsG0380014624.01.T01:intron 25.0%
!! TTCAATTTTTGACCTTGTAT+GGG + Chr3:57444814-57444833 MsG0380014624.01.T01:intron 25.0%
!! TTTTTCATTGTTTGATTCTC+TGG - Chr3:57445872-57445891 None:intergenic 25.0%
!!! AATATATATATGGTGCTGTT+TGG + Chr3:57445340-57445359 MsG0380014624.01.T01:CDS 25.0%
!!! AATTTTAGGTAGTTTGTTTG+GGG + Chr3:57445125-57445144 MsG0380014624.01.T01:intron 25.0%
!!! CTAGTGAATTTTAATTGGTA+AGG - Chr3:57446094-57446113 None:intergenic 25.0%
!!! CTTCATTGAAACTTTTGAAA+GGG + Chr3:57446261-57446280 MsG0380014624.01.T01:intron 25.0%
!!! CTTTTGAGATAAATCTTTTC+AGG + Chr3:57446778-57446797 MsG0380014624.01.T01:intron 25.0%
!!! GAATTTTAGGTAGTTTGTTT+GGG + Chr3:57445124-57445143 MsG0380014624.01.T01:intron 25.0%
!!! GCTATTTCTATATAGAACAA+AGG + Chr3:57444978-57444997 MsG0380014624.01.T01:intron 25.0%
!!! TATTGAATATTTGTTTCTGC+AGG + Chr3:57444420-57444439 MsG0380014624.01.T01:intron 25.0%
AAACTCAACGTCTATATTTC+AGG - Chr3:57445585-57445604 None:intergenic 30.0%
AAATAAAATTGCTAGTCCAG+TGG - Chr3:57446835-57446854 None:intergenic 30.0%
AACTCAACGTCTATATTTCA+GGG - Chr3:57445584-57445603 None:intergenic 30.0%
AACTTATCATTAACCTCAAG+TGG + Chr3:57447547-57447566 MsG0380014624.01.T01:intron 30.0%
AATAAGTTCATTACTCTCAC+CGG + Chr3:57448067-57448086 MsG0380014624.01.T01:CDS 30.0%
AATTATCCTTCTTGAGATAC+AGG + Chr3:57445733-57445752 MsG0380014624.01.T01:CDS 30.0%
AGGTAATAAAAGGACTTATG+TGG + Chr3:57444782-57444801 MsG0380014624.01.T01:intron 30.0%
AGGTTAATGATAAGTTACCA+TGG - Chr3:57447543-57447562 None:intergenic 30.0%
AGTAAGTAGATGACGAAATA+TGG - Chr3:57443852-57443871 None:intergenic 30.0%
AGTGAGAAAATTAGTGGAAA+AGG + Chr3:57447053-57447072 MsG0380014624.01.T01:intron 30.0%
ATCTCAAAAGAAGGTAATAG+AGG - Chr3:57446768-57446787 None:intergenic 30.0%
ATCTTGAAACTCATCCAATA+TGG - Chr3:57448251-57448270 None:intergenic 30.0%
ATGCTAAAAACATGTCTGTT+TGG - Chr3:57443908-57443927 None:intergenic 30.0%
ATTATCATTCATTTGGTTGG+AGG + Chr3:57446046-57446065 MsG0380014624.01.T01:CDS 30.0%
CAAAAGTTTCAATGAAGTGT+CGG - Chr3:57446258-57446277 None:intergenic 30.0%
CAAATAGAGCCTAAAAGAAA+AGG - Chr3:57444925-57444944 None:intergenic 30.0%
CATACAAGGTCAAAAATTGA+AGG - Chr3:57444815-57444834 None:intergenic 30.0%
CTATCAGCTGTACTATATAT+TGG - Chr3:57446684-57446703 None:intergenic 30.0%
CTTCAAATTACAAAAGCTTC+TGG + Chr3:57444292-57444311 MsG0380014624.01.T01:CDS 30.0%
GAAAAGAAACTACTCTTACA+TGG + Chr3:57444632-57444651 MsG0380014624.01.T01:CDS 30.0%
GAGATCAAATTGTTATCACA+AGG + Chr3:57445285-57445304 MsG0380014624.01.T01:CDS 30.0%
GCAGAAAATGGAAGAATTAT+GGG + Chr3:57445617-57445636 MsG0380014624.01.T01:CDS 30.0%
GTACAAAGTACATTTCAACT+GGG - Chr3:57446923-57446942 None:intergenic 30.0%
GTCACAACAATTGCAAAAAA+TGG + Chr3:57445541-57445560 MsG0380014624.01.T01:intron 30.0%
GTTTCATGAATTTGACATGA+GGG - Chr3:57446181-57446200 None:intergenic 30.0%
TAACAAAACATAGCATAGGT+TGG - Chr3:57446567-57446586 None:intergenic 30.0%
TACTTTGTACAGAAGAAAGT+TGG + Chr3:57446933-57446952 MsG0380014624.01.T01:intron 30.0%
TATAAAGGTTACCGATATAC+CGG - Chr3:57445156-57445175 None:intergenic 30.0%
TATAAGGAACTGTATACGTT+TGG - Chr3:57444063-57444082 None:intergenic 30.0%
TATATAGTACAGCTGATAGA+TGG + Chr3:57446685-57446704 MsG0380014624.01.T01:intron 30.0%
TATTGGGAGCTATAAATTTC+TGG + Chr3:57446880-57446899 MsG0380014624.01.T01:intron 30.0%
TCAAATTGTTATCACAAGGA+AGG + Chr3:57445289-57445308 MsG0380014624.01.T01:CDS 30.0%
TCCAATGAATGAGTATGTAA+AGG - Chr3:57445443-57445462 None:intergenic 30.0%
TCCAGAATTGAAAACCATAT+TGG + Chr3:57448234-57448253 MsG0380014624.01.T01:CDS 30.0%
TCCTTTACATACTCATTCAT+TGG + Chr3:57445439-57445458 MsG0380014624.01.T01:CDS 30.0%
TCGCGGAAAAAAAACTATAA+AGG - Chr3:57445171-57445190 None:intergenic 30.0%
TGCAGAAAATGGAAGAATTA+TGG + Chr3:57445616-57445635 MsG0380014624.01.T01:CDS 30.0%
TGGAATTTAACCTCTTAATG+TGG - Chr3:57448129-57448148 None:intergenic 30.0%
TGTACAAAGTACATTTCAAC+TGG - Chr3:57446924-57446943 None:intergenic 30.0%
TGTATACGTTTGGTATGTAT+GGG - Chr3:57444053-57444072 None:intergenic 30.0%
TGTTTCATGAATTTGACATG+AGG - Chr3:57446182-57446201 None:intergenic 30.0%
TTTAATTGGTAAGGGACTAA+GGG - Chr3:57446085-57446104 None:intergenic 30.0%
! AACAGCTTATAACTTGTATG+AGG - Chr3:57445026-57445045 None:intergenic 30.0%
! AGAATTATGGGAAGTATAAC+AGG + Chr3:57445629-57445648 MsG0380014624.01.T01:CDS 30.0%
! ATATTAGCCTCATATCTACA+AGG - Chr3:57445325-57445344 None:intergenic 30.0%
! CTTCAATTTTTGACCTTGTA+TGG + Chr3:57444813-57444832 MsG0380014624.01.T01:intron 30.0%
! CTTTTCTTTTAGGCTCTATT+TGG + Chr3:57444923-57444942 MsG0380014624.01.T01:intron 30.0%
! GTAAGATTGTTTGATAGTTC+AGG - Chr3:57443943-57443962 None:intergenic 30.0%
! TCCAATATGGTTTTCAATTC+TGG - Chr3:57448238-57448257 None:intergenic 30.0%
! TGAAGTTTTCTGCATATGAT+AGG - Chr3:57444215-57444234 None:intergenic 30.0%
! TTTCTTTTCCTTTATCACGA+AGG - Chr3:57447509-57447528 None:intergenic 30.0%
!! CTAGAAAATGGATTGTTCTA+AGG + Chr3:57446964-57446983 MsG0380014624.01.T01:intron 30.0%
!! TTTTAATTGGTAAGGGACTA+AGG - Chr3:57446086-57446105 None:intergenic 30.0%
!!! CGAATTTTAGGTAGTTTGTT+TGG + Chr3:57445123-57445142 MsG0380014624.01.T01:intron 30.0%
AACAATGAAAAAGGCTTCCA+TGG + Chr3:57445880-57445899 MsG0380014624.01.T01:CDS 35.0%
AACTTCAGAAGAGACATAGT+TGG + Chr3:57446490-57446509 MsG0380014624.01.T01:intron 35.0%
AAGATACACAGGTAACTGAA+GGG - Chr3:57447942-57447961 None:intergenic 35.0%
AAGTCGTCCATATTCAAGAA+GGG - Chr3:57444898-57444917 None:intergenic 35.0%
AATAAAAGGACTTATGTGGC+TGG + Chr3:57444786-57444805 MsG0380014624.01.T01:CDS 35.0%
AATCGCTTTCTTGCAGAAAA+TGG + Chr3:57445605-57445624 MsG0380014624.01.T01:CDS 35.0%
ACATACTCATTCATTGGACT+AGG + Chr3:57445445-57445464 MsG0380014624.01.T01:CDS 35.0%
ACATTCTTCTACCTATGTTG+TGG + Chr3:57445920-57445939 MsG0380014624.01.T01:CDS 35.0%
ACTGGGAAATATATAGCCAA+TGG - Chr3:57446906-57446925 None:intergenic 35.0%
AGAAATCCTGATTCTGTAAC+TGG + Chr3:57444609-57444628 MsG0380014624.01.T01:CDS 35.0%
AGATTTGTAGAGTAACACCT+TGG - Chr3:57447757-57447776 None:intergenic 35.0%
AGCAATGTCATTCAAAGTAG+AGG + Chr3:57447424-57447443 MsG0380014624.01.T01:intron 35.0%
ATAGAGGAAGTTTCACTTTG+TGG - Chr3:57446752-57446771 None:intergenic 35.0%
ATATCAACCAAAATGCTGTG+AGG + Chr3:57447598-57447617 MsG0380014624.01.T01:intron 35.0%
ATATTCAAGAAGGGTTGAAC+AGG - Chr3:57444889-57444908 None:intergenic 35.0%
CAAAATCTGGTTAATCTTCC+AGG + Chr3:57445676-57445695 MsG0380014624.01.T01:CDS 35.0%
CAGTGGACAATGGTAAAATT+TGG - Chr3:57448180-57448199 None:intergenic 35.0%
CATATCATCACAGCAGTTAT+TGG + Chr3:57444465-57444484 MsG0380014624.01.T01:CDS 35.0%
CATTTCATCAATAGCATGAG+TGG - Chr3:57448149-57448168 None:intergenic 35.0%
CTAAAGTTGCTGACAAAATC+TGG + Chr3:57445663-57445682 MsG0380014624.01.T01:CDS 35.0%
CTCAATATCACCACATTAAG+AGG + Chr3:57448116-57448135 MsG0380014624.01.T01:CDS 35.0%
CTGTATACGTTTGGTATGTA+TGG - Chr3:57444054-57444073 None:intergenic 35.0%
GAAATCCTGATTCTGTAACT+GGG + Chr3:57444610-57444629 MsG0380014624.01.T01:CDS 35.0%
GAGTTATTCCTTCGTGATAA+AGG + Chr3:57447498-57447517 MsG0380014624.01.T01:intron 35.0%
GATGCTGTTAGAGTTAATCT+TGG + Chr3:57444654-57444673 MsG0380014624.01.T01:CDS 35.0%
GATTGTAATGTCGTTCATAC+CGG + Chr3:57445372-57445391 MsG0380014624.01.T01:CDS 35.0%
GCAGATAAGAACATTTGCAT+TGG + Chr3:57443700-57443719 MsG0380014624.01.T01:five_prime_UTR 35.0%
GTTAGCATTAGTGTAGTGTA+TGG + Chr3:57446371-57446390 MsG0380014624.01.T01:intron 35.0%
TAAGTCGTCCATATTCAAGA+AGG - Chr3:57444899-57444918 None:intergenic 35.0%
TATGCATATGGCTATGTGAT+TGG - Chr3:57444013-57444032 None:intergenic 35.0%
TCAAAAAAATACCCCAACAG+TGG + Chr3:57446711-57446730 MsG0380014624.01.T01:intron 35.0%
TGTAATGAAGATTGCAACCA+TGG - Chr3:57445900-57445919 None:intergenic 35.0%
TGTTCAACCCTTCTTGAATA+TGG + Chr3:57444888-57444907 MsG0380014624.01.T01:intron 35.0%
TTATCATTAACCTCAAGTGG+TGG + Chr3:57447550-57447569 MsG0380014624.01.T01:intron 35.0%
TTCATTGTTTGATTCTCTGG+TGG - Chr3:57445869-57445888 None:intergenic 35.0%
TTGGAACTCACTTCTTTGAA+GGG - Chr3:57447251-57447270 None:intergenic 35.0%
TTGTGACAATTATTGTGGGA+CGG - Chr3:57445528-57445547 None:intergenic 35.0%
! AGGTTACATTAGCGATTTTC+AGG + Chr3:57447898-57447917 MsG0380014624.01.T01:CDS 35.0%
! CTTTATTTGGGGTTGTACAT+TGG + Chr3:57447109-57447128 MsG0380014624.01.T01:intron 35.0%
! GGTTTTCAGAGTTGTTAGAT+AGG + Chr3:57447153-57447172 MsG0380014624.01.T01:intron 35.0%
! TGGTTTTCAATTCTGGACAA+TGG - Chr3:57448231-57448250 None:intergenic 35.0%
! TTGGATTTTATGAGCCTTAC+TGG + Chr3:57445999-57446018 MsG0380014624.01.T01:CDS 35.0%
!! AACACTTTAAAGTTCTCTGC+AGG - Chr3:57447851-57447870 None:intergenic 35.0%
!! AACCAAGTTCTAGGAGTATT+GGG + Chr3:57446864-57446883 MsG0380014624.01.T01:intron 35.0%
!! AGAACTTTAAAGTGTTGGTG+GGG + Chr3:57447855-57447874 MsG0380014624.01.T01:CDS 35.0%
!! AGAGAACTTTAAAGTGTTGG+TGG + Chr3:57447853-57447872 MsG0380014624.01.T01:CDS 35.0%
!! AGCTATAAATTTCTGGCCAT+TGG + Chr3:57446887-57446906 MsG0380014624.01.T01:intron 35.0%
!! AGGAAATGTAAAAAGTGCTG+TGG + Chr3:57444440-57444459 MsG0380014624.01.T01:intron 35.0%
!! GAGAACTTTAAAGTGTTGGT+GGG + Chr3:57447854-57447873 MsG0380014624.01.T01:CDS 35.0%
!! GGATTTGTTGGATCATTTGA+AGG + Chr3:57447023-57447042 MsG0380014624.01.T01:intron 35.0%
!! TGCAGAGAACTTTAAAGTGT+TGG + Chr3:57447850-57447869 MsG0380014624.01.T01:CDS 35.0%
!!! TAGTTTGTTTGGGGTTTTTC+CGG + Chr3:57445134-57445153 MsG0380014624.01.T01:intron 35.0%
ACTGCTCAATTAGGATGGAT+TGG + Chr3:57444516-57444535 MsG0380014624.01.T01:CDS 40.0%
AGCATTAGTGTAGTGTATGG+AGG + Chr3:57446374-57446393 MsG0380014624.01.T01:intron 40.0%
AGCTATGTGATTTCAACCAC+TGG + Chr3:57446816-57446835 MsG0380014624.01.T01:intron 40.0%
AGTTGAGACAGCAGAAAATC+AGG - Chr3:57443746-57443765 None:intergenic 40.0%
ATCCAAAGCAACCACAACAT+AGG - Chr3:57445934-57445953 None:intergenic 40.0%
ATTGTTTGATTCTCTGGTGG+AGG - Chr3:57445866-57445885 None:intergenic 40.0%
CAATGCTCCTTGTAGATATG+AGG + Chr3:57445315-57445334 MsG0380014624.01.T01:CDS 40.0%
CCTAGAACTTGGTTGAAGTA+AGG - Chr3:57446858-57446877 None:intergenic 40.0%
CCTTACTTCAACCAAGTTCT+AGG + Chr3:57446855-57446874 MsG0380014624.01.T01:intron 40.0%
CTACAAATCTTGCTTGACAG+TGG + Chr3:57447767-57447786 MsG0380014624.01.T01:CDS 40.0%
CTGACACAAGTCTATGCATA+TGG - Chr3:57444025-57444044 None:intergenic 40.0%
GAAGATACACAGGTAACTGA+AGG - Chr3:57447943-57447962 None:intergenic 40.0%
GACAGCAGAAAATCAGGAAA+AGG - Chr3:57443740-57443759 None:intergenic 40.0%
GATGGACATGCAAAAAGAAC+TGG + Chr3:57444328-57444347 MsG0380014624.01.T01:CDS 40.0%
GCAATGTCAATAAGCCAGTA+AGG - Chr3:57446016-57446035 None:intergenic 40.0%
GCACAACAAAGCAAGAAAAC+TGG - Chr3:57444546-57444565 None:intergenic 40.0%
GCACTAAAATCTGCAATGTG+CGG - Chr3:57448022-57448041 None:intergenic 40.0%
GTAACAGGAAGAAGATACAC+AGG - Chr3:57447953-57447972 None:intergenic 40.0%
GTGTATCTTCTTCCTGTTAC+TGG + Chr3:57447953-57447972 MsG0380014624.01.T01:CDS 40.0%
GTTGGAACTCACTTCTTTGA+AGG - Chr3:57447252-57447271 None:intergenic 40.0%
TAAACTAGGCTGCATCTACT+AGG - Chr3:57444165-57444184 None:intergenic 40.0%
TACAGAAGAAAGTTGGAGCT+TGG + Chr3:57446940-57446959 MsG0380014624.01.T01:intron 40.0%
TACCTATGTTGTGGTTGCTT+TGG + Chr3:57445929-57445948 MsG0380014624.01.T01:CDS 40.0%
TCATTTGGTTGGAGGATATC+AGG + Chr3:57446054-57446073 MsG0380014624.01.T01:CDS 40.0%
TCTCAACTCTCAAGGAAATC+TGG + Chr3:57443758-57443777 MsG0380014624.01.T01:five_prime_UTR 40.0%
TGATAAGTTACCATGGCGTT+TGG - Chr3:57447536-57447555 None:intergenic 40.0%
TTGGAACTTTGCGCTTTCAA+GGG + Chr3:57447726-57447745 MsG0380014624.01.T01:CDS 40.0%
! AAGGTACCTGTATCTCAAGA+AGG - Chr3:57445742-57445761 None:intergenic 40.0%
! CTTTTCCCAGTTACAGAATC+AGG - Chr3:57444618-57444637 None:intergenic 40.0%
! TCATTCATTGGACTAGGACT+TGG + Chr3:57445451-57445470 MsG0380014624.01.T01:CDS 40.0%
! TCTGGTGCTTATGATGATGA+TGG + Chr3:57444310-57444329 MsG0380014624.01.T01:CDS 40.0%
! TGATGTTGTCACTTCAGTGT+CGG - Chr3:57446297-57446316 None:intergenic 40.0%
! TTGGAGCTTGGACTAGAAAA+TGG + Chr3:57446952-57446971 MsG0380014624.01.T01:intron 40.0%
! TTGGGGTTTTTCCGGTATAT+CGG + Chr3:57445142-57445161 MsG0380014624.01.T01:intron 40.0%
!! ACAGGAGAAGTACTTCAAAC+TGG - Chr3:57444871-57444890 None:intergenic 40.0%
!! ATCACAGCAGTTATTGGTTC+TGG + Chr3:57444471-57444490 MsG0380014624.01.T01:CDS 40.0%
!! CAACCAAGTTCTAGGAGTAT+TGG + Chr3:57446863-57446882 MsG0380014624.01.T01:intron 40.0%
!! CACAACTTGAGAGTGCTAAA+AGG - Chr3:57447627-57447646 None:intergenic 40.0%
!! CAGGTTGGATTGGTAATTTG+AGG - Chr3:57447832-57447851 None:intergenic 40.0%
!! CTTTAAAGTTCTCTGCAGGT+TGG - Chr3:57447847-57447866 None:intergenic 40.0%
!! CTTTTAGCACTCTCAAGTTG+TGG + Chr3:57447625-57447644 MsG0380014624.01.T01:intron 40.0%
!! TGCTTTGGATATGCAGCTTT+TGG + Chr3:57445944-57445963 MsG0380014624.01.T01:CDS 40.0%
!! TGGTGATATTGAGCTTGTTG+TGG - Chr3:57448109-57448128 None:intergenic 40.0%
!! TTTAAAGTGTTGGTGGGGAA+TGG + Chr3:57447860-57447879 MsG0380014624.01.T01:CDS 40.0%
!!! TGGTTCTGGTGTTTTGTCAT+TGG + Chr3:57444485-57444504 MsG0380014624.01.T01:CDS 40.0%
AACCCTGTCAAGAGATTTCC+TGG - Chr3:57445980-57445999 None:intergenic 45.0%
AACTAATGTCACCAAGTGCC+TGG - Chr3:57445697-57445716 None:intergenic 45.0%
AAGAAAACGACCAAACGCCA+TGG + Chr3:57447523-57447542 MsG0380014624.01.T01:intron 45.0%
AATGGTCATAGTCTCACAGC+AGG + Chr3:57447878-57447897 MsG0380014624.01.T01:CDS 45.0%
ACACCAGGAAATCTCTTGAC+AGG + Chr3:57445974-57445993 MsG0380014624.01.T01:CDS 45.0%
AGAGGTCGTGTTGGAGAATT+TGG + Chr3:57447661-57447680 MsG0380014624.01.T01:intron 45.0%
ATCGTTCACAAAGCCACTGT+TGG - Chr3:57446727-57446746 None:intergenic 45.0%
CAAATCCAACCACAGTGACA+AGG - Chr3:57447010-57447029 None:intergenic 45.0%
CAAGCCAAGTTATGGAGATC+CGG - Chr3:57445394-57445413 None:intergenic 45.0%
CACCAGGAAATCTCTTGACA+GGG + Chr3:57445975-57445994 MsG0380014624.01.T01:CDS 45.0%
CATACCGGATCTCCATAACT+TGG + Chr3:57445387-57445406 MsG0380014624.01.T01:CDS 45.0%
CTCCCAATACTCCTAGAACT+TGG - Chr3:57446869-57446888 None:intergenic 45.0%
CTGAAACCCAAGCCAAGTTA+TGG - Chr3:57445402-57445421 None:intergenic 45.0%
CTTGGAACTTTGCGCTTTCA+AGG + Chr3:57447725-57447744 MsG0380014624.01.T01:CDS 45.0%
GACAATTATTGTGGGACGGA+TGG - Chr3:57445524-57445543 None:intergenic 45.0%
GGAAATCTCTTGACAGGGTT+TGG + Chr3:57445980-57445999 MsG0380014624.01.T01:CDS 45.0%
GGATCTCCATAACTTGGCTT+GGG + Chr3:57445393-57445412 MsG0380014624.01.T01:CDS 45.0%
GTCACTGTGGTTGGATTTGT+TGG + Chr3:57447011-57447030 MsG0380014624.01.T01:intron 45.0%
TACATACGAAGAGGTCGTGT+TGG + Chr3:57447652-57447671 MsG0380014624.01.T01:intron 45.0%
TCAACCAAAATGCTGTGAGG+CGG + Chr3:57447601-57447620 MsG0380014624.01.T01:intron 45.0%
TCGAGGTTGAAGGAAGTTGT+CGG - Chr3:57447798-57447817 None:intergenic 45.0%
TCGTTCACAAAGCCACTGTT+GGG - Chr3:57446726-57446745 None:intergenic 45.0%
TGGTTAATCTTCCAGGCACT+TGG + Chr3:57445683-57445702 MsG0380014624.01.T01:CDS 45.0%
TGTGGCTGATACATACGAAG+AGG + Chr3:57447643-57447662 MsG0380014624.01.T01:intron 45.0%
TTCTGCTGTCTCAACTCTCA+AGG + Chr3:57443750-57443769 MsG0380014624.01.T01:five_prime_UTR 45.0%
! AAGTTCTCTGCAGGTTGGAT+TGG - Chr3:57447842-57447861 None:intergenic 45.0%
! CAAGAAGCACAACAAACTCG+CGG - Chr3:57445188-57445207 None:intergenic 45.0%
! CTGGTGTTTTGTCATTGGCA+TGG + Chr3:57444490-57444509 MsG0380014624.01.T01:CDS 45.0%
! CTTGAAAGCGCAAAGTTCCA+AGG - Chr3:57447727-57447746 None:intergenic 45.0%
! GAATGGTCTTGAAACCTCGA+TGG - Chr3:57448300-57448319 None:intergenic 45.0%
!! GCATGGAGTACTGCTCAATT+AGG + Chr3:57444507-57444526 MsG0380014624.01.T01:CDS 45.0%
!! GCTCAATTAGGATGGATTGG+AGG + Chr3:57444519-57444538 MsG0380014624.01.T01:CDS 45.0%
!! GGAGAAGTACTTCAAACTGG+TGG - Chr3:57444868-57444887 None:intergenic 45.0%
!! GGAGTACTGCTCAATTAGGA+TGG + Chr3:57444511-57444530 MsG0380014624.01.T01:CDS 45.0%
!! ACTAAAATTATTAAATAAAT+GGG + Chr3:57446445-57446464 MsG0380014624.01.T01:intron 5.0%
AATGCACTCAAGGGTTCCCA+AGG + Chr3:57447701-57447720 MsG0380014624.01.T01:intron 50.0%
ACTGGTGCAGATTTCGCTCT+TGG + Chr3:57447971-57447990 MsG0380014624.01.T01:CDS 50.0%
AGTGTGCGATTCGAGGTTGA+AGG - Chr3:57447808-57447827 None:intergenic 50.0%
CGGATCTCCATAACTTGGCT+TGG + Chr3:57445392-57445411 MsG0380014624.01.T01:CDS 50.0%
CGTTCACAAAGCCACTGTTG+GGG - Chr3:57446725-57446744 None:intergenic 50.0%
GCGAAATCTGCACCAGTAAC+AGG - Chr3:57447968-57447987 None:intergenic 50.0%
GGCAACACTAGTCCCATACA+AGG - Chr3:57444829-57444848 None:intergenic 50.0%
GTACTTCAAACTGGTGGCTG+TGG - Chr3:57444862-57444881 None:intergenic 50.0%
TCTCATCTCACCACCACTTG+AGG - Chr3:57447563-57447582 None:intergenic 50.0%
TGCTTCCTTGTCACTGTGGT+TGG + Chr3:57447002-57447021 MsG0380014624.01.T01:intron 50.0%
TGCTTGCTTCCTTGTCACTG+TGG + Chr3:57446998-57447017 MsG0380014624.01.T01:intron 50.0%
TGGCATACCAGGTTTGTCAC+CGG - Chr3:57448089-57448108 None:intergenic 50.0%
! AAGTGGTGGTGAGATGAGAG+TGG + Chr3:57447564-57447583 MsG0380014624.01.T01:intron 50.0%
! GTAGCTGAGTTTTCCAGTGC+AGG - Chr3:57448205-57448224 None:intergenic 50.0%
! TGGTCTTGAAACCTCGATGG+CGG - Chr3:57448297-57448316 None:intergenic 50.0%
! TTGAGGAAGTGTGCGATTCG+AGG - Chr3:57447815-57447834 None:intergenic 50.0%
!! GCTTTTGGAGATGCTACACC+AGG + Chr3:57445959-57445978 MsG0380014624.01.T01:CDS 50.0%
!! TGAGCTTGTTGTGGCATACC+AGG - Chr3:57448100-57448119 None:intergenic 50.0%
ACTCTCACCGGTGACAAACC+TGG + Chr3:57448079-57448098 MsG0380014624.01.T01:CDS 55.0%
AGCGCAAAGTTCCAAGGCCT+TGG - Chr3:57447721-57447740 None:intergenic 55.0%
AGTGCAGGTGCAGTGGACAA+TGG - Chr3:57448190-57448209 None:intergenic 55.0%
ATTGTCCACTGCACCTGCAC+TGG + Chr3:57448189-57448208 MsG0380014624.01.T01:CDS 55.0%
CGCTTTCAAGGGTCTGTCCA+AGG + Chr3:57447737-57447756 MsG0380014624.01.T01:CDS 55.0%
GCGCAAAGTTCCAAGGCCTT+GGG - Chr3:57447720-57447739 None:intergenic 55.0%
GGTGGCTGTGGTGAGTACAT+AGG - Chr3:57444850-57444869 None:intergenic 55.0%
GTCCCAATGTGGCCAACCAA+GGG - Chr3:57448000-57448019 None:intergenic 55.0%
TCCCAATGTGGCCAACCAAG+GGG - Chr3:57447999-57448018 None:intergenic 55.0%
TGCAATGTGCGGTCCCAATG+TGG - Chr3:57448011-57448030 None:intergenic 55.0%
! AAGGCCGCCTCACAGCATTT+TGG - Chr3:57447608-57447627 None:intergenic 55.0%
! GATGTTTTCGCTACCCCGTC+AGG + Chr3:57448268-57448287 MsG0380014624.01.T01:CDS 55.0%
! GTTTTCCAGTGCAGGTGCAG+TGG - Chr3:57448197-57448216 None:intergenic 55.0%
!! ATTTCGCTCTTGGTGCCCCT+TGG + Chr3:57447981-57448000 MsG0380014624.01.T01:CDS 55.0%
CTCAAGGGTTCCCAAGGCCT+TGG + Chr3:57447707-57447726 MsG0380014624.01.T01:intron 60.0%
GGTCCCAATGTGGCCAACCA+AGG - Chr3:57448001-57448020 None:intergenic 60.0%
! CCTCGATGGCGGTAACCTGA+CGG - Chr3:57448286-57448305 None:intergenic 60.0%
! CTCGATGGCGGTAACCTGAC+GGG - Chr3:57448285-57448304 None:intergenic 60.0%
! GCCCCTTGGTTGGCCACATT+GGG + Chr3:57447995-57448014 MsG0380014624.01.T01:CDS 60.0%
! TCGATGGCGGTAACCTGACG+GGG - Chr3:57448284-57448303 None:intergenic 60.0%
! TGCCCCTTGGTTGGCCACAT+TGG + Chr3:57447994-57448013 MsG0380014624.01.T01:CDS 60.0%
CCGTCAGGTTACCGCCATCG+AGG + Chr3:57448283-57448302 MsG0380014624.01.T01:CDS 65.0%
!! CGCTCTTGGTGCCCCTTGGT+TGG + Chr3:57447985-57448004 MsG0380014624.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 57443700 57448330 57443700 ID=MsG0380014624.01;Name=MsG0380014624.01
Chr3 mRNA 57443700 57448330 57443700 ID=MsG0380014624.01.T01;Parent=MsG0380014624.01;Name=MsG0380014624.01.T01;_AED=0.32;_eAED=0.35;_QI=128|0.57|0.62|1|0.85|0.75|8|0|525
Chr3 exon 57443700 57443779 57443700 ID=MsG0380014624.01.T01:exon:1636;Parent=MsG0380014624.01.T01
Chr3 exon 57444226 57444349 57444226 ID=MsG0380014624.01.T01:exon:1637;Parent=MsG0380014624.01.T01
Chr3 exon 57444442 57444675 57444442 ID=MsG0380014624.01.T01:exon:1638;Parent=MsG0380014624.01.T01
Chr3 exon 57444784 57444829 57444784 ID=MsG0380014624.01.T01:exon:1639;Parent=MsG0380014624.01.T01
Chr3 exon 57445276 57445490 57445276 ID=MsG0380014624.01.T01:exon:1640;Parent=MsG0380014624.01.T01
Chr3 exon 57445594 57445754 57445594 ID=MsG0380014624.01.T01:exon:1641;Parent=MsG0380014624.01.T01
Chr3 exon 57445848 57446075 57445848 ID=MsG0380014624.01.T01:exon:1642;Parent=MsG0380014624.01.T01
Chr3 exon 57447713 57448330 57447713 ID=MsG0380014624.01.T01:exon:1643;Parent=MsG0380014624.01.T01
Chr3 five_prime_UTR 57443700 57443779 57443700 ID=MsG0380014624.01.T01:five_prime_utr;Parent=MsG0380014624.01.T01
Chr3 five_prime_UTR 57444226 57444273 57444226 ID=MsG0380014624.01.T01:five_prime_utr;Parent=MsG0380014624.01.T01
Chr3 CDS 57444274 57444349 57444274 ID=MsG0380014624.01.T01:cds;Parent=MsG0380014624.01.T01
Chr3 CDS 57444442 57444675 57444442 ID=MsG0380014624.01.T01:cds;Parent=MsG0380014624.01.T01
Chr3 CDS 57444784 57444829 57444784 ID=MsG0380014624.01.T01:cds;Parent=MsG0380014624.01.T01
Chr3 CDS 57445276 57445490 57445276 ID=MsG0380014624.01.T01:cds;Parent=MsG0380014624.01.T01
Chr3 CDS 57445594 57445754 57445594 ID=MsG0380014624.01.T01:cds;Parent=MsG0380014624.01.T01
Chr3 CDS 57445848 57446075 57445848 ID=MsG0380014624.01.T01:cds;Parent=MsG0380014624.01.T01
Chr3 CDS 57447713 57448330 57447713 ID=MsG0380014624.01.T01:cds;Parent=MsG0380014624.01.T01
Gene Sequence

>MsG0380014624.01.T01

ATGGATGGGAAAAACTCTCTTCAAATTACAAAAGCTTCTGGTGCTTATGATGATGATGGACATGCAAAAAGAACTGGAAATGTAAAAAGTGCTGTGGCTCATATCATCACAGCAGTTATTGGTTCTGGTGTTTTGTCATTGGCATGGAGTACTGCTCAATTAGGATGGATTGGAGGACCAGTTTTCTTGCTTTGTTGTGCAATAGTTACTTATATTTCTTCGTTCCTTTTATCTGATTGTTATAGAAATCCTGATTCTGTAACTGGGAAAAGAAACTACTCTTACATGGATGCTGTTAGAGTTAATCTTGGTAATAAAAGGACTTATGTGGCTGGTTTCCTTCAATTTTTGACCTTGGCTATTATGAGATCAAATTGTTATCACAAGGAAGGACACAATGCTCCTTGTAGATATGAGGCTAATATATATATGGTGCTGTTTGGAGTTGTTCAGATTGTAATGTCGTTCATACCGGATCTCCATAACTTGGCTTGGGTTTCAGTTGTTGCTGCACTAATGTCCTTTACATACTCATTCATTGGACTAGGACTTGGCATATCAACAGTCATAAACGTTGAGTTTAATCGCTTTCTTGCAGAAAATGGAAGAATTATGGGAAGTATAACAGGAGTACAAACTGCTAAAGTTGCTGACAAAATCTGGTTAATCTTCCAGGCACTTGGTGACATTAGTTTTTCCTATCCATATTCAATTATCCTTCTTGAGATACAGGACACACTAGAGTCTCCTCCACCAGAGAATCAAACAATGAAAAAGGCTTCCATGGTTGCAATCTTCATTACAACATTCTTCTACCTATGTTGTGGTTGCTTTGGATATGCAGCTTTTGGAGATGCTACACCAGGAAATCTCTTGACAGGGTTTGGATTTTATGAGCCTTACTGGCTTATTGACATTGCCAATGTTTGTATTATCATTCATTTGGTTGGAGGATATCAGGGTTCCCAAGGCCTTGGAACTTTGCGCTTTCAAGGGTCTGTCCAAGGTGTTACTCTACAAATCTTGCTTGACAGTGGCAGCTCCGACAACTTCCTTCAACCTCGAATCGCACACTTCCTCAAATTACCAATCCAACCTGCAGAGAACTTTAAAGTGTTGGTGGGGAATGGTCATAGTCTCACAGCAGGTTACATTAGCGATTTTCAGGTACAAATACAAGATCACACCCTTCAGTTACCTGTGTATCTTCTTCCTGTTACTGGTGCAGATTTCGCTCTTGGTGCCCCTTGGTTGGCCACATTGGGACCGCACATTGCAGATTTTAGTGCTTTAACCCTTAAATTTTATTTGGGTAATAAGTTCATTACTCTCACCGGTGACAAACCTGGTATGCCACAACAAGCTCAATATCACCACATTAAGAGGTTAAATTCCACTCATGCTATTGATGAAATGTTTTCACTCCAAATTTTACCATTGTCCACTGCACCTGCACTGGAAAACTCAGCTACTTTCCATTGTCCAGAATTGAAAACCATATTGGATGAGTTTCAAGATGTTTTCGCTACCCCGTCAGGTTACCGCCATCGAGGTTTCAAGACCATTCCGTTCCGCTAA

Protein sequence

>MsG0380014624.01.T01

MDGKNSLQITKASGAYDDDGHAKRTGNVKSAVAHIITAVIGSGVLSLAWSTAQLGWIGGPVFLLCCAIVTYISSFLLSDCYRNPDSVTGKRNYSYMDAVRVNLGNKRTYVAGFLQFLTLAIMRSNCYHKEGHNAPCRYEANIYMVLFGVVQIVMSFIPDLHNLAWVSVVAALMSFTYSFIGLGLGISTVINVEFNRFLAENGRIMGSITGVQTAKVADKIWLIFQALGDISFSYPYSIILLEIQDTLESPPPENQTMKKASMVAIFITTFFYLCCGCFGYAAFGDATPGNLLTGFGFYEPYWLIDIANVCIIIHLVGGYQGSQGLGTLRFQGSVQGVTLQILLDSGSSDNFLQPRIAHFLKLPIQPAENFKVLVGNGHSLTAGYISDFQVQIQDHTLQLPVYLLPVTGADFALGAPWLATLGPHIADFSALTLKFYLGNKFITLTGDKPGMPQQAQYHHIKRLNSTHAIDEMFSLQILPLSTAPALENSATFHCPELKTILDEFQDVFATPSGYRHRGFKTIPFR*