AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014229.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014229.01.T01 MTR_3g053220 75.676 74 16 1 6 77 701 774 1.38e-29 112
MsG0380014229.01.T01 MTR_3g053220 100.000 39 0 0 89 127 877 915 7.68e-20 84.7
MsG0380014229.01.T01 MTR_3g115340 48.980 49 25 0 27 75 516 564 1.91e-13 66.2
MsG0380014229.01.T01 MTR_3g115340 48.980 49 25 0 27 75 587 635 1.93e-13 66.2
MsG0380014229.01.T01 MTR_3g115340 48.980 49 25 0 27 75 600 648 1.93e-13 66.2
MsG0380014229.01.T01 MTR_7g104080 47.458 59 20 1 27 74 663 721 3.89e-12 62.8
MsG0380014229.01.T01 MTR_7g104080 47.458 59 20 1 27 74 660 718 3.97e-12 62.8
MsG0380014229.01.T01 MTR_7g104080 47.458 59 20 1 27 74 663 721 3.97e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014229.01.T01 AT3G20440 64.615 65 19 1 27 91 724 784 3.14e-23 94.4
MsG0380014229.01.T01 AT3G20440 64.615 65 19 1 27 91 689 749 4.72e-22 91.3
MsG0380014229.01.T01 AT3G20440 64.615 65 19 1 27 91 719 779 5.27e-22 90.9
MsG0380014229.01.T01 AT5G03650 49.153 59 19 1 27 74 615 673 2.38e-12 63.2

Find 24 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTCATGGGCAATGAATT+TGG 0.133188 3:-51652428 MsG0380014229.01.T01:CDS
GCATCTTATCAGCACTTCTT+TGG 0.279473 3:+51652835 None:intergenic
ACTTCATGGGCAATGAATTT+GGG 0.376403 3:-51652427 MsG0380014229.01.T01:CDS
TGATTTATGTACATTTGATA+AGG 0.407266 3:-51652226 MsG0380014229.01.T01:intron
AAAGGTTGAGTTACCGGTTG+TGG 0.420333 3:+51652795 None:intergenic
AGATTGATCACATTAACAAT+TGG 0.451707 3:-51652467 MsG0380014229.01.T01:CDS
ATTAACCTGAGCAGTTCTGC+TGG 0.459980 3:+51650896 None:intergenic
TCGTGCATATATGAACTTCA+TGG 0.487103 3:-51652441 MsG0380014229.01.T01:CDS
ACTGCCCAGCAGAACTGCTC+AGG 0.502326 3:-51650901 MsG0380014229.01.T01:CDS
TTGATCACATTAACAATTGG+CGG 0.517895 3:-51652464 MsG0380014229.01.T01:CDS
TGTATGCAGAAAACCACAAC+CGG 0.527554 3:-51652808 MsG0380014229.01.T01:intron
GAGAAGTCGTTGCTTGGTGA+TGG 0.547982 3:+51652302 None:intergenic
CGTGCATATATGAACTTCAT+GGG 0.558618 3:-51652440 MsG0380014229.01.T01:CDS
TTCAGGTTTATAAGTTGAAG+CGG 0.560016 3:-51649927 MsG0380014229.01.T01:intron
GAATATGAGAAGTCGTTGCT+TGG 0.563270 3:+51652296 None:intergenic
TTAACCTGAGCAGTTCTGCT+GGG 0.586757 3:+51650897 None:intergenic
TTGACAGAGTCGATGGCCAT+CGG 0.593891 3:-51650941 MsG0380014229.01.T01:intron
TTCGCTTGCAAATCGTCAGT+GGG 0.599934 3:-51652276 MsG0380014229.01.T01:CDS
CAATGAATTTGGGCATCCAA+AGG 0.604519 3:-51652417 MsG0380014229.01.T01:intron
ATTCGCTTGCAAATCGTCAG+TGG 0.612873 3:-51652277 MsG0380014229.01.T01:CDS
TATCAAATGTACATAAATCA+CGG 0.614534 3:+51652229 None:intergenic
ACATGTATTGACAGAGTCGA+TGG 0.618189 3:-51650948 MsG0380014229.01.T01:intron
TGGCCATCGGAACTGCATAG+AGG 0.627805 3:-51650928 MsG0380014229.01.T01:CDS
GCACCTCTATGCAGTTCCGA+TGG 0.631608 3:+51650925 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTTTATTAAAAATAGTTT+GGG + Chr3:51652628-51652647 None:intergenic 10.0%
!! TATCTTTATTAAAAATAGTT+TGG + Chr3:51652629-51652648 None:intergenic 10.0%
!! AACTATTTAATAATCATATG+TGG - Chr3:51650755-51650774 MsG0380014229.01.T01:intron 15.0%
!! AAGTTAAAAACAAATACAAA+AGG + Chr3:51651788-51651807 None:intergenic 15.0%
!! TATAAAAATGAGAAGAAAAA+AGG + Chr3:51650261-51650280 None:intergenic 15.0%
!!! TTATAGTTCTTTGAAAATAT+TGG + Chr3:51651695-51651714 None:intergenic 15.0%
!! AAAATTGAAAATGAAGAGAA+GGG + Chr3:51651445-51651464 None:intergenic 20.0%
!! AAAGCAACCAATTATTTAAA+AGG + Chr3:51650979-51650998 None:intergenic 20.0%
!! AAGATTACAACTATAACAAA+AGG + Chr3:51650589-51650608 None:intergenic 20.0%
!! AAGTAATTGGATAATGAAAT+TGG - Chr3:51650640-51650659 MsG0380014229.01.T01:intron 20.0%
!! AATTAAGTGTGAATATGTAT+AGG - Chr3:51651137-51651156 MsG0380014229.01.T01:intron 20.0%
!! AGATTACAACTATAACAAAA+GGG + Chr3:51650588-51650607 None:intergenic 20.0%
!! ATTAACAAATATCACCAATA+AGG - Chr3:51652020-51652039 MsG0380014229.01.T01:intron 20.0%
!! CTAAAAAATGAACATTGAAA+AGG + Chr3:51652342-51652361 None:intergenic 20.0%
!! TATCAAATGTACATAAATCA+CGG + Chr3:51650550-51650569 None:intergenic 20.0%
!! TGATTTATGTACATTTGATA+AGG - Chr3:51650550-51650569 MsG0380014229.01.T01:intron 20.0%
!!! AAATAAATGCATTGATGAAT+TGG + Chr3:51650666-51650685 None:intergenic 20.0%
!!! AAGAATTTGTTTTTCCTTAT+TGG + Chr3:51652037-51652056 None:intergenic 20.0%
!!! ATATTTGTTAATACTGAACA+GGG + Chr3:51652012-51652031 None:intergenic 20.0%
!!! CTTTTCATTTGAAACAAATA+CGG - Chr3:51652258-51652277 MsG0380014229.01.T01:CDS 20.0%
!!! TTAAGAGTATCTTTGAAATT+TGG - Chr3:51652512-51652531 MsG0380014229.01.T01:intron 20.0%
!!! TTCAATGTTCATTTTTTAGA+AGG - Chr3:51652343-51652362 MsG0380014229.01.T01:intron 20.0%
! AAATTGAAAATGAAGAGAAG+GGG + Chr3:51651444-51651463 None:intergenic 25.0%
! AAGATACTCTTAAGTTTCAT+TGG + Chr3:51652505-51652524 None:intergenic 25.0%
! AATGAGAAGAAAAAAGGAAA+TGG + Chr3:51650255-51650274 None:intergenic 25.0%
! ACATAATCTCCATTTGTTTA+CGG + Chr3:51650825-51650844 None:intergenic 25.0%
! AGAATGTATAATTGAAGAAC+AGG + Chr3:51651324-51651343 None:intergenic 25.0%
! AGATTGATCACATTAACAAT+TGG - Chr3:51650309-51650328 MsG0380014229.01.T01:intron 25.0%
! AGGAAAAACAAATTCTTGAA+TGG - Chr3:51652040-51652059 MsG0380014229.01.T01:intron 25.0%
! ATATTTCCAGAAAAGTAACT+TGG + Chr3:51652681-51652700 None:intergenic 25.0%
! CAAATGCTAAACATTAAATG+TGG + Chr3:51651562-51651581 None:intergenic 25.0%
! CAACCAATTATTTAAAAGGA+AGG + Chr3:51650975-51650994 None:intergenic 25.0%
! CAATTATTTAAAAGGAAGGA+AGG + Chr3:51650971-51650990 None:intergenic 25.0%
! CACATTTAATGTTTAGCATT+TGG - Chr3:51651560-51651579 MsG0380014229.01.T01:intron 25.0%
! CTTCAATTATACATTCTAAG+TGG - Chr3:51651327-51651346 MsG0380014229.01.T01:intron 25.0%
! GAAAATTGAAAATGAAGAGA+AGG + Chr3:51651446-51651465 None:intergenic 25.0%
! GATCTTCACAAAATCAAAAA+AGG + Chr3:51650002-51650021 None:intergenic 25.0%
! GTAAACAAAAAATGTAACAG+TGG + Chr3:51651915-51651934 None:intergenic 25.0%
! TAAAACAATTGATGTGGTAA+AGG + Chr3:51652443-51652462 None:intergenic 25.0%
! TAACTATCATAAGAATCTGT+TGG + Chr3:51651471-51651490 None:intergenic 25.0%
! TAGATGTAAAACAATTGATG+TGG + Chr3:51652449-51652468 None:intergenic 25.0%
! TCAACTTATAAACCTGAAAA+AGG + Chr3:51652847-51652866 None:intergenic 25.0%
! TCTGTATACAGTCTTTATTA+TGG + Chr3:51652573-51652592 None:intergenic 25.0%
!! CTTCCTTCCTTTTAAATAAT+TGG - Chr3:51650969-51650988 MsG0380014229.01.T01:intron 25.0%
!! GAACAGAATTCTTTATCTTT+TGG + Chr3:51652822-51652841 None:intergenic 25.0%
!! GATATTTGTTAATACTGAAC+AGG + Chr3:51652013-51652032 None:intergenic 25.0%
!! GCTTATTTGAGTTTATCTAT+TGG + Chr3:51651278-51651297 None:intergenic 25.0%
!!! AACTTATCATGTTTTGATGT+GGG - Chr3:51651803-51651822 MsG0380014229.01.T01:intron 25.0%
!!! AATGTTTAGCATTTGGTTTT+AGG - Chr3:51651567-51651586 MsG0380014229.01.T01:intron 25.0%
!!! GAAAATATTGGTCTTCTTTA+AGG + Chr3:51651683-51651702 None:intergenic 25.0%
!!! TAACTTATCATGTTTTGATG+TGG - Chr3:51651802-51651821 MsG0380014229.01.T01:intron 25.0%
AACAGAAAAACAGAGGAAAT+TGG + Chr3:51650200-51650219 None:intergenic 30.0%
ACAGATGAAATAAAGTATGC+CGG - Chr3:51651648-51651667 MsG0380014229.01.T01:intron 30.0%
ACATGAAGTCTTAATCTGAA+TGG + Chr3:51650791-51650810 None:intergenic 30.0%
ATCAAAAAAGGTTGAGTTAC+CGG + Chr3:51649990-51650009 None:intergenic 30.0%
ATGAACATTGAAAAGGATGA+AGG + Chr3:51652335-51652354 None:intergenic 30.0%
CATAATCTCCATTTGTTTAC+GGG + Chr3:51650824-51650843 None:intergenic 30.0%
GTACATTAATTGAATGCAGT+TGG + Chr3:51651369-51651388 None:intergenic 30.0%
GTTAATGAAGAGAGAGTAAA+TGG - Chr3:51652470-51652489 MsG0380014229.01.T01:CDS 30.0%
TAAAGATACCAGTTTCTATC+AGG - Chr3:51652641-51652660 MsG0380014229.01.T01:intron 30.0%
TAAGATATGACCTGCAAATA+AGG + Chr3:51651412-51651431 None:intergenic 30.0%
TCTGGAAATATGAATTACAG+TGG - Chr3:51652690-51652709 MsG0380014229.01.T01:intron 30.0%
TCTTATGATAGTTATGCAGT+AGG - Chr3:51651477-51651496 MsG0380014229.01.T01:intron 30.0%
TGAACATTGAAAAGGATGAA+GGG + Chr3:51652334-51652353 None:intergenic 30.0%
TTCAAAGAACTATAAGCAGA+AGG - Chr3:51651700-51651719 MsG0380014229.01.T01:intron 30.0%
TTGATCACATTAACAATTGG+CGG - Chr3:51650312-51650331 MsG0380014229.01.T01:intron 30.0%
! AAACAAATACAAAAGGCACA+AGG + Chr3:51651781-51651800 None:intergenic 30.0%
! AATTCTGTTCTACCTTTTTC+AGG - Chr3:51652832-51652851 MsG0380014229.01.T01:CDS 30.0%
! ACTTTGTCAAGACATTTTGA+TGG - Chr3:51651608-51651627 MsG0380014229.01.T01:intron 30.0%
! TTAACACTTTCCTTATTTGC+AGG - Chr3:51651399-51651418 MsG0380014229.01.T01:intron 30.0%
! TTCAGGTTTATAAGTTGAAG+CGG - Chr3:51652849-51652868 MsG0380014229.01.T01:CDS 30.0%
! TTTAGCACAGAACTTTTTGA+AGG - Chr3:51652753-51652772 MsG0380014229.01.T01:intron 30.0%
!! AGTTCTAAACAGAAAAACAG+AGG + Chr3:51650207-51650226 None:intergenic 30.0%
!! TCTGTTTTTCTGTTTAGAAC+TGG - Chr3:51650206-51650225 MsG0380014229.01.T01:intron 30.0%
AAAGTTAGTTACCGTACAAC+AGG + Chr3:51651593-51651612 None:intergenic 35.0%
AAATCAAAGAGGCGAAAAGA+TGG + Chr3:51651755-51651774 None:intergenic 35.0%
AACTTCATGGGCAATGAATT+TGG - Chr3:51650348-51650367 MsG0380014229.01.T01:intron 35.0%
AAGGGTTTCACACTTTACAT+AGG - Chr3:51652108-51652127 MsG0380014229.01.T01:intron 35.0%
ACTATAAGGAGTCTTTATCG+AGG - Chr3:51650144-51650163 MsG0380014229.01.T01:intron 35.0%
ACTGTCATTAACATGGTGAA+AGG + Chr3:51650924-51650943 None:intergenic 35.0%
ACTTCATGGGCAATGAATTT+GGG - Chr3:51650349-51650368 MsG0380014229.01.T01:intron 35.0%
AGGGTTTCACACTTTACATA+GGG - Chr3:51652109-51652128 MsG0380014229.01.T01:intron 35.0%
AGTAATCAATTCCTCACCTT+TGG + Chr3:51650378-51650397 None:intergenic 35.0%
ATGTGATCAATCTGATCATC+TGG + Chr3:51650302-51650321 None:intergenic 35.0%
CAATATGCTAAAAACTGACG+AGG + Chr3:51651007-51651026 None:intergenic 35.0%
CATCATGTCCTGAAAAGAAT+GGG + Chr3:51650858-51650877 None:intergenic 35.0%
CCATGTTAATGACAGTTCAA+TGG - Chr3:51650928-51650947 MsG0380014229.01.T01:CDS 35.0%
CCATTGAACTGTCATTAACA+TGG + Chr3:51650931-51650950 None:intergenic 35.0%
CGAGCATTCAGAAAACTATA+AGG - Chr3:51650130-51650149 MsG0380014229.01.T01:intron 35.0%
CGTGCATATATGAACTTCAT+GGG - Chr3:51650336-51650355 MsG0380014229.01.T01:intron 35.0%
CTATAAGGAGTCTTTATCGA+GGG - Chr3:51650145-51650164 MsG0380014229.01.T01:intron 35.0%
GAAAAGTAACTTGGACAAGA+AGG + Chr3:51652672-51652691 None:intergenic 35.0%
GCACAAGGATAAAATCAAAG+AGG + Chr3:51651766-51651785 None:intergenic 35.0%
GCTGTGGTGTATATAAGTAA+GGG - Chr3:51652171-51652190 MsG0380014229.01.T01:intron 35.0%
TAAACTCTTGTGAGTCTGTT+CGG + Chr3:51651253-51651272 None:intergenic 35.0%
TAACATGTTCAGTCACAAAC+AGG + Chr3:51650425-51650444 None:intergenic 35.0%
TATAAGGAGTCTTTATCGAG+GGG - Chr3:51650146-51650165 MsG0380014229.01.T01:intron 35.0%
TCATCATGTCCTGAAAAGAA+TGG + Chr3:51650859-51650878 None:intergenic 35.0%
TCATTAACATGGTGAAAGGT+TGG + Chr3:51650920-51650939 None:intergenic 35.0%
TCGTGCATATATGAACTTCA+TGG - Chr3:51650335-51650354 MsG0380014229.01.T01:intron 35.0%
TGTAAAGTGTGAAACCCTTA+AGG + Chr3:51652107-51652126 None:intergenic 35.0%
TTAATTGAATGCAGTTGGCA+TGG + Chr3:51651364-51651383 None:intergenic 35.0%
TTAGATCACAATGATACCTG+AGG + Chr3:51650040-51650059 None:intergenic 35.0%
TTGAAACAAATACGGCCTTT+GGG - Chr3:51652266-51652285 MsG0380014229.01.T01:CDS 35.0%
! ACTTTACATAGGGCTTTGAT+GGG - Chr3:51652119-51652138 MsG0380014229.01.T01:intron 35.0%
! GATGTTTTCATAAGCTCTCT+AGG - Chr3:51651180-51651199 MsG0380014229.01.T01:intron 35.0%
! TTACTTGTCCCATTCTTTTC+AGG - Chr3:51650847-51650866 MsG0380014229.01.T01:CDS 35.0%
! TTCTGTTTAGAACTGGAGAT+AGG - Chr3:51650213-51650232 MsG0380014229.01.T01:intron 35.0%
! TTTGAAACAAATACGGCCTT+TGG - Chr3:51652265-51652284 MsG0380014229.01.T01:CDS 35.0%
!! CTGTTTGTTTGTTTTTCCTC+AGG - Chr3:51650021-51650040 MsG0380014229.01.T01:intron 35.0%
!! GTGGGATCTTTTGAAAAAGA+TGG - Chr3:51650518-51650537 MsG0380014229.01.T01:intron 35.0%
!! TCATTTGCAGAAGCATTGTT+CGG - Chr3:51650098-51650117 MsG0380014229.01.T01:intron 35.0%
!! TCGTTCGTCTAAGTTTTAAC+TGG - Chr3:51651986-51652005 MsG0380014229.01.T01:intron 35.0%
!!! TCTTGTCCAAGTTACTTTTC+TGG - Chr3:51652672-51652691 MsG0380014229.01.T01:intron 35.0%
AAACTCTTGTGAGTCTGTTC+GGG + Chr3:51651252-51651271 None:intergenic 40.0%
AAATAAAGTATGCCGGTCAG+GGG - Chr3:51651655-51651674 MsG0380014229.01.T01:intron 40.0%
AAGTGTGAAACCCTTAAGGA+CGG + Chr3:51652103-51652122 None:intergenic 40.0%
ACCTCCTTAGTTGGTTAGTA+TGG - Chr3:51652144-51652163 MsG0380014229.01.T01:intron 40.0%
ACTAGTTATGACTCGTGTCT+TGG - Chr3:51650613-51650632 MsG0380014229.01.T01:intron 40.0%
AGAGAGAGTAAATGGATGAG+TGG - Chr3:51652478-51652497 MsG0380014229.01.T01:intron 40.0%
AGGAAAAGCCTGATAGAAAC+TGG + Chr3:51652652-51652671 None:intergenic 40.0%
ATTGAAGAACAGGACACTTG+AGG + Chr3:51651314-51651333 None:intergenic 40.0%
CAATGAATTTGGGCATCCAA+AGG - Chr3:51650359-51650378 MsG0380014229.01.T01:intron 40.0%
CATGATGAAGCTGGATGAAA+AGG - Chr3:51650871-51650890 MsG0380014229.01.T01:CDS 40.0%
CCTCCTTAGTTGGTTAGTAT+GGG - Chr3:51652145-51652164 MsG0380014229.01.T01:intron 40.0%
CTACCCATACTAACCAACTA+AGG + Chr3:51652151-51652170 None:intergenic 40.0%
CTTAGTTGGTTAGTATGGGT+AGG - Chr3:51652149-51652168 MsG0380014229.01.T01:intron 40.0%
GAAATAAAGTATGCCGGTCA+GGG - Chr3:51651654-51651673 MsG0380014229.01.T01:intron 40.0%
GAATATGAGAAGTCGTTGCT+TGG + Chr3:51650483-51650502 None:intergenic 40.0%
GACAGTTCGTCTGTATTCTA+AGG - Chr3:51651030-51651049 MsG0380014229.01.T01:intron 40.0%
GAGACAGGATGCAATAAAGA+AGG + Chr3:51652066-51652085 None:intergenic 40.0%
GCATCTTATCAGCACTTCTT+TGG + Chr3:51649944-51649963 None:intergenic 40.0%
GGCTGTGGTGTATATAAGTA+AGG - Chr3:51652170-51652189 MsG0380014229.01.T01:intron 40.0%
GTAAGTGACCCGTAAACAAA+TGG - Chr3:51650813-51650832 MsG0380014229.01.T01:intron 40.0%
GTGTCTTGGTGGAAAGTAAT+TGG - Chr3:51650627-51650646 MsG0380014229.01.T01:intron 40.0%
TGAAATAAAGTATGCCGGTC+AGG - Chr3:51651653-51651672 MsG0380014229.01.T01:intron 40.0%
TGATCATCTGGCACAAAAGT+CGG + Chr3:51650290-51650309 None:intergenic 40.0%
TGTATGCAGAAAACCACAAC+CGG - Chr3:51649968-51649987 MsG0380014229.01.T01:intron 40.0%
TTATGCAGTAGGTGTAGAAG+AGG - Chr3:51651488-51651507 MsG0380014229.01.T01:intron 40.0%
! AAGAGGCGAAAAGATGGATT+TGG + Chr3:51651749-51651768 None:intergenic 40.0%
! ACATGTATTGACAGAGTCGA+TGG - Chr3:51651828-51651847 MsG0380014229.01.T01:intron 40.0%
! CACTTTACATAGGGCTTTGA+TGG - Chr3:51652118-51652137 MsG0380014229.01.T01:intron 40.0%
! GTTGTGGTTTTCTGCATACA+AGG + Chr3:51649968-51649987 None:intergenic 40.0%
!! CTGTATTCTAAGGCTCTACT+TGG - Chr3:51651040-51651059 MsG0380014229.01.T01:intron 40.0%
!! TTCATAAGCTCTCTAGGACT+AGG - Chr3:51651186-51651205 MsG0380014229.01.T01:intron 40.0%
!! TTTTCAGGACATGATGAAGC+TGG - Chr3:51650862-51650881 MsG0380014229.01.T01:CDS 40.0%
!!! TTGGTTTTAGGCCTGTTGTA+CGG - Chr3:51651579-51651598 MsG0380014229.01.T01:intron 40.0%
AAGAGATTGCAGGACTTCGA+CGG + Chr3:51652308-51652327 None:intergenic 45.0%
AATCATAAGCAGTGCACTGC+TGG - Chr3:51650711-51650730 MsG0380014229.01.T01:intron 45.0%
AATTTGGGCATCCAAAGGTG+AGG - Chr3:51650364-51650383 MsG0380014229.01.T01:intron 45.0%
AGTTATGACTCGTGTCTTGG+TGG - Chr3:51650616-51650635 MsG0380014229.01.T01:intron 45.0%
AGTTTGCAAGTCCGTCCTTA+AGG - Chr3:51652089-51652108 MsG0380014229.01.T01:intron 45.0%
ATTAACCTGAGCAGTTCTGC+TGG + Chr3:51651883-51651902 None:intergenic 45.0%
ATTCGCTTGCAAATCGTCAG+TGG - Chr3:51650499-51650518 MsG0380014229.01.T01:intron 45.0%
CAGGTCATATCTTACGTCAG+AGG - Chr3:51651418-51651437 MsG0380014229.01.T01:intron 45.0%
CATGTTCAGTCACAAACAGG+TGG + Chr3:51650422-51650441 None:intergenic 45.0%
CCCATACTAACCAACTAAGG+AGG + Chr3:51652148-51652167 None:intergenic 45.0%
GACTTGCAAACTATCGAGAC+AGG + Chr3:51652081-51652100 None:intergenic 45.0%
GATCATCTGGCACAAAAGTC+GGG + Chr3:51650289-51650308 None:intergenic 45.0%
GTGTGTGTGTGTGTACAACA+CGG + Chr3:51652201-51652220 None:intergenic 45.0%
GTTTGCAAGTCCGTCCTTAA+GGG - Chr3:51652090-51652109 MsG0380014229.01.T01:intron 45.0%
TGAAGGGAGAAAGAGATTGC+AGG + Chr3:51652318-51652337 None:intergenic 45.0%
TTAACCTGAGCAGTTCTGCT+GGG + Chr3:51651882-51651901 None:intergenic 45.0%
TTCGCTTGCAAATCGTCAGT+GGG - Chr3:51650500-51650519 MsG0380014229.01.T01:intron 45.0%
! AAAGGTTGAGTTACCGGTTG+TGG + Chr3:51649984-51650003 None:intergenic 45.0%
! GCGTCGATGAAGGAATTAGT+TGG - Chr3:51652229-51652248 MsG0380014229.01.T01:CDS 45.0%
! GTGATGGAAACTCAACACTC+TGG + Chr3:51650461-51650480 None:intergenic 45.0%
! TCTAGGACTAGGAGAGCTTA+TGG - Chr3:51651197-51651216 MsG0380014229.01.T01:intron 45.0%
! TGATGGGTAACCTCCTTAGT+TGG - Chr3:51652135-51652154 MsG0380014229.01.T01:intron 45.0%
! TTCTTTAAGGATCCCCTGAC+CGG + Chr3:51651670-51651689 None:intergenic 45.0%
ACACACACACACACCACACA+TGG - Chr3:51652207-51652226 MsG0380014229.01.T01:intron 50.0%
AGTAGGTGTAGAAGAGGCTG+GGG - Chr3:51651494-51651513 MsG0380014229.01.T01:intron 50.0%
CAGTAGGTGTAGAAGAGGCT+GGG - Chr3:51651493-51651512 MsG0380014229.01.T01:intron 50.0%
CTACACCTAGCAATGCCCAA+AGG + Chr3:51652284-51652303 None:intergenic 50.0%
GAAACTCAACACTCTGGCAC+GGG + Chr3:51650455-51650474 None:intergenic 50.0%
GGAAACTCAACACTCTGGCA+CGG + Chr3:51650456-51650475 None:intergenic 50.0%
TATCTTGCTGCCAGTCCATC+TGG - Chr3:51650068-51650087 MsG0380014229.01.T01:intron 50.0%
TGGTTAGTATGGGTAGGCTG+TGG - Chr3:51652155-51652174 MsG0380014229.01.T01:intron 50.0%
TTGACAGAGTCGATGGCCAT+CGG - Chr3:51651835-51651854 MsG0380014229.01.T01:intron 50.0%
! GAGAAGTCGTTGCTTGGTGA+TGG + Chr3:51650477-51650496 None:intergenic 50.0%
GCAAATGACCGCCTACCAGA+TGG + Chr3:51650086-51650105 None:intergenic 55.0%
GCACCTCTATGCAGTTCCGA+TGG + Chr3:51651854-51651873 None:intergenic 55.0%
GCAGTAGGTGTAGAAGAGGC+TGG - Chr3:51651492-51651511 MsG0380014229.01.T01:intron 55.0%
TCCTTCATCGACGCCATGTG+TGG + Chr3:51652223-51652242 None:intergenic 55.0%
TGGCCATCGGAACTGCATAG+AGG - Chr3:51651848-51651867 MsG0380014229.01.T01:intron 55.0%
TTGCTGCCAGTCCATCTGGT+AGG - Chr3:51650072-51650091 MsG0380014229.01.T01:intron 55.0%
! TACGGCCTTTGGGCATTGCT+AGG - Chr3:51652276-51652295 MsG0380014229.01.T01:CDS 55.0%
!! ACCACACATGGCGTCGATGA+AGG - Chr3:51652219-51652238 MsG0380014229.01.T01:intron 55.0%
ACTGCCCAGCAGAACTGCTC+AGG - Chr3:51651875-51651894 MsG0380014229.01.T01:intron 60.0%
CTGCCAGTCCATCTGGTAGG+CGG - Chr3:51650075-51650094 MsG0380014229.01.T01:intron 60.0%
TGACCGCCTACCAGATGGAC+TGG + Chr3:51650081-51650100 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 51649912 51652886 51649912 ID=MsG0380014229.01;Name=MsG0380014229.01
Chr3 mRNA 51649912 51652886 51649912 ID=MsG0380014229.01.T01;Parent=MsG0380014229.01;Name=MsG0380014229.01.T01;_AED=0.49;_eAED=0.66;_QI=0|0|0|1|0.25|0.2|5|0|137
Chr3 exon 51652809 51652886 51652809 ID=MsG0380014229.01.T01:exon:10069;Parent=MsG0380014229.01.T01
Chr3 exon 51652418 51652495 51652418 ID=MsG0380014229.01.T01:exon:10068;Parent=MsG0380014229.01.T01
Chr3 exon 51652227 51652336 51652227 ID=MsG0380014229.01.T01:exon:10067;Parent=MsG0380014229.01.T01
Chr3 exon 51650842 51650956 51650842 ID=MsG0380014229.01.T01:exon:10066;Parent=MsG0380014229.01.T01
Chr3 exon 51649912 51649944 51649912 ID=MsG0380014229.01.T01:exon:10065;Parent=MsG0380014229.01.T01
Chr3 CDS 51652809 51652886 51652809 ID=MsG0380014229.01.T01:cds;Parent=MsG0380014229.01.T01
Chr3 CDS 51652418 51652495 51652418 ID=MsG0380014229.01.T01:cds;Parent=MsG0380014229.01.T01
Chr3 CDS 51652227 51652336 51652227 ID=MsG0380014229.01.T01:cds;Parent=MsG0380014229.01.T01
Chr3 CDS 51650842 51650956 51650842 ID=MsG0380014229.01.T01:cds;Parent=MsG0380014229.01.T01
Chr3 CDS 51649912 51649944 51649912 ID=MsG0380014229.01.T01:cds;Parent=MsG0380014229.01.T01
Gene Sequence

>MsG0380014229.01.T01

ATGCTGGCAGATTGTTTCACATTAATTTTCCAAAGAAGTGCTGATAAGATGCTCCTTGTATGCAGAAAACCACAACCGATGATCAGATTGATCACATTAACAATTGGCGGTCGTGCATATATGAACTTCATGGGCAATGAATTTGGGCATCCAAAGAGTGTTGAGTTTCCATCACCAAGCAACGACTTCTCATATTCGCTTGCAAATCGTCAGTGGGATCTTTTGAAAAAGATGGAATTCACCGTGATTTATGTACATTTGATAAGAGTCGATGGCCATCGGAACTGCATAGAGGTGCAACTGCCCAGCAGAACTGCTCAGGTTAATAGTTTGTTGCCACTGTTACATTTTTTGTTTACTTTCTATGTTTCGCTGATCAACGTTTATAAGTTGAAGCGGATTTTGAGAATATGA
Protein sequence

>MsG0380014229.01.T01

MLADCFTLIFQRSADKMLLVCRKPQPMIRLITLTIGGRAYMNFMGNEFGHPKSVEFPSPSNDFSYSLANRQWDLLKKMEFTVIYVHLIRVDGHRNCIEVQLPSRTAQVNSLLPLLHFLFTFYVSLINVYKLKRILRI*