AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014924.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014924.01.T01 MTR_3g031280 94.798 346 6 1 42 387 110 443 0.0 683
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014924.01.T01 AT1G16870 72.093 344 84 1 44 387 149 480 0.0 523

Find 94 sgRNAs with CRISPR-Local

Find 401 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTTTGTCATTATTATTTA+AGG 0.114353 3:+62567357 MsG0380014924.01.T01:CDS
ATGGGATTGGATCAAATATT+TGG 0.190552 3:-62566556 None:intergenic
GGGTATGGAGAAGGAGTTTA+AGG 0.245416 3:+62564003 MsG0380014924.01.T01:CDS
GTACAATGAATCCTACTTAA+AGG 0.259888 3:+62566523 MsG0380014924.01.T01:CDS
ATCATAGGATAGGATAAAAT+TGG 0.260680 3:+62568161 MsG0380014924.01.T01:three_prime_UTR
AAGCATTCACAGAAGATAAT+TGG 0.280842 3:+62567968 MsG0380014924.01.T01:CDS
AAGAAACATCAATATTATTA+TGG 0.295093 3:-62568120 None:intergenic
ACTCCAGCACCCTCACCTAA+TGG 0.332107 3:-62566575 None:intergenic
CTGTTACAATTCGTTCTTGT+CGG 0.347934 3:+62566917 MsG0380014924.01.T01:CDS
CCTGTCTCCAGTATAATAAC+TGG 0.349768 3:+62566869 MsG0380014924.01.T01:intron
GTTTCCTCGATACAGTTTAG+AGG 0.363867 3:+62567325 MsG0380014924.01.T01:CDS
AAGCAAATTAAACAGATTAG+TGG 0.372839 3:-62568201 None:intergenic
GTAAGTTCTTTAGCATGTAT+TGG 0.392858 3:-62566940 None:intergenic
ATAAGTGCTCACCGAACTAT+AGG 0.395011 3:-62561858 None:intergenic
TGAAGGGTTGCCGGTGGGTA+TGG 0.395428 3:+62563988 MsG0380014924.01.T01:CDS
AAAGCTTCGTAAAGACTTAC+CGG 0.396657 3:+62567277 MsG0380014924.01.T01:CDS
ATATTTGATCCAATCCCATT+AGG 0.398910 3:+62566560 MsG0380014924.01.T01:CDS
ACAGTCAGAACACATTTCAT+TGG 0.399509 3:-62568094 None:intergenic
ATGCTCTTCCCACAACTAAC+AGG 0.405346 3:-62565026 None:intergenic
CTCCAGCACCCTCACCTAAT+GGG 0.410782 3:-62566574 None:intergenic
CGACAAGAACGAATTGTAAC+AGG 0.422331 3:-62566916 None:intergenic
AAAATTTGGGAATGTTAAAT+GGG 0.423823 3:+62561776 MsG0380014924.01.T01:CDS
TTGGAGTGGTAGTTCGTTTG+AGG 0.435531 3:+62566693 MsG0380014924.01.T01:CDS
GTTGAAAGATGTTGATTCAA+TGG 0.436711 3:+62566604 MsG0380014924.01.T01:CDS
GGCTAGAGAAGAAGGTTGGT+TGG 0.444143 3:+62565073 MsG0380014924.01.T01:CDS
GTGAGGGTGCTGGAGTTGGT+TGG 0.448655 3:+62566582 MsG0380014924.01.T01:CDS
TATCTTCTGTGAATGCTTCA+CGG 0.451514 3:-62567963 None:intergenic
GTTCAGTGGGCTAGAGAAGA+AGG 0.458017 3:+62565065 MsG0380014924.01.T01:CDS
TAGATGGTCCTGTTAGTTGT+GGG 0.458076 3:+62565018 MsG0380014924.01.T01:CDS
TGATCAATTGCAATAAGAAC+AGG 0.464590 3:-62566743 None:intergenic
TCATATAACATTGTACCTTC+AGG 0.465490 3:-62566632 None:intergenic
CGCTTGCAATGCTTGTTCAG+TGG 0.466093 3:+62565051 MsG0380014924.01.T01:CDS
GTTTACATTCAGTGAGTATG+AGG 0.478979 3:+62566891 MsG0380014924.01.T01:CDS
ATACCCACCGGCAACCCTTC+AGG 0.479077 3:-62563986 None:intergenic
GTCATGAGCTATATTATCAT+AGG 0.480947 3:+62568146 MsG0380014924.01.T01:three_prime_UTR
TGCAGCTCCACACATGGGTA+TGG 0.482755 3:+62561821 MsG0380014924.01.T01:CDS
GCACCCTCACCTAATGGGAT+TGG 0.488190 3:-62566569 None:intergenic
ATGTGGTCGCCTCACGGTAA+AGG 0.489983 3:+62564106 MsG0380014924.01.T01:CDS
AGGACATTCTCAGCCTGGAC+AGG 0.493448 3:-62565176 None:intergenic
CTTTGAGGACATTCTCAGCC+TGG 0.500631 3:-62565181 None:intergenic
ATGTTCCTAGCGCAAAAGAA+TGG 0.502917 3:+62565102 MsG0380014924.01.T01:CDS
AAGAGAGTCATCCTATAGTT+CGG 0.504334 3:+62561847 MsG0380014924.01.T01:CDS
AGCATCCGCAAACAGAGCTA+TGG 0.506948 3:+62565147 MsG0380014924.01.T01:CDS
GCTTGCAATGCTTGTTCAGT+GGG 0.509576 3:+62565052 MsG0380014924.01.T01:CDS
ATCCCATTAGGTGAGGGTGC+TGG 0.514336 3:+62566572 MsG0380014924.01.T01:CDS
GCATGGCAGTTCCTTTAAGT+AGG 0.520686 3:-62566534 None:intergenic
TTAGGTGAGGGTGCTGGAGT+TGG 0.522232 3:+62566578 MsG0380014924.01.T01:CDS
TTAGATGGTCCTGTTAGTTG+TGG 0.530984 3:+62565017 MsG0380014924.01.T01:CDS
GAGCTATATTATCATAGGAT+AGG 0.534573 3:+62568151 MsG0380014924.01.T01:three_prime_UTR
TGCATGATGATATGATGGTA+GGG 0.542729 3:+62567228 MsG0380014924.01.T01:CDS
GATGTCTGTCATCGCATGAA+AGG 0.544467 3:-62568045 None:intergenic
GCATCCGCAAACAGAGCTAT+GGG 0.545282 3:+62565148 MsG0380014924.01.T01:CDS
GTTAAATGGGATGATAATTG+CGG 0.545345 3:+62561789 MsG0380014924.01.T01:CDS
TTCTCTCATTCAACAGCTGT+AGG 0.545667 3:+62567254 MsG0380014924.01.T01:CDS
TTATATGAGCTGGTGAAGAC+TGG 0.546286 3:+62566647 MsG0380014924.01.T01:CDS
GCTATGGGATACACCTGTCC+AGG 0.548901 3:+62565163 MsG0380014924.01.T01:CDS
GTATCCCATAGCTCTGTTTG+CGG 0.550833 3:-62565152 None:intergenic
TCGAGTTGCAGCTCCACACA+TGG 0.553357 3:+62561815 MsG0380014924.01.T01:CDS
CCGTGAGGCGACCACATTGG+CGG 0.553756 3:-62564100 None:intergenic
AGCGCAAAAGAATGGACTCA+TGG 0.561206 3:+62565110 MsG0380014924.01.T01:CDS
AATGATGCATGATGATATGA+TGG 0.562422 3:+62567223 MsG0380014924.01.T01:CDS
CGAGCATCTACCGGTACATC+CGG 0.564569 3:-62567296 None:intergenic
ATGGGAATGGAACAGAAATG+AGG 0.568750 3:+62568013 MsG0380014924.01.T01:CDS
CCGCCAATGTGGTCGCCTCA+CGG 0.569515 3:+62564100 MsG0380014924.01.T01:CDS
GAACAAACACATGCAGCTGT+TGG 0.571799 3:+62566674 MsG0380014924.01.T01:CDS
AACATAGCACGAGCATCTAC+CGG 0.574696 3:-62567305 None:intergenic
TAAAGACTTACCGGATGTAC+CGG 0.575503 3:+62567286 MsG0380014924.01.T01:CDS
ATTGGATCAAATATTTGGCA+TGG 0.576246 3:-62566551 None:intergenic
ATGCATGATGATATGATGGT+AGG 0.579098 3:+62567227 MsG0380014924.01.T01:CDS
GTTGCCGGTGGGTATGGAGA+AGG 0.587804 3:+62563994 MsG0380014924.01.T01:CDS
ATAATAATGACAAACAGTCT+CGG 0.588365 3:-62567351 None:intergenic
AACTCCTTCTCCATACCCAC+CGG 0.589743 3:-62563998 None:intergenic
AGTGGGCTAGAGAAGAAGGT+TGG 0.589906 3:+62565069 MsG0380014924.01.T01:CDS
TGGGAATGGAACAGAAATGA+GGG 0.590727 3:+62568014 MsG0380014924.01.T01:CDS
TGATCCAATCCCATTAGGTG+AGG 0.592137 3:+62566565 MsG0380014924.01.T01:CDS
GATTCAATGGCAATTCCTGA+AGG 0.594538 3:+62566617 MsG0380014924.01.T01:CDS
AGGTACAATGTTATATGAGC+TGG 0.596373 3:+62566637 MsG0380014924.01.T01:CDS
GATCCAATCCCATTAGGTGA+GGG 0.607998 3:+62566566 MsG0380014924.01.T01:CDS
TTGCCTGAAGGGTTGCCGGT+GGG 0.611176 3:+62563983 MsG0380014924.01.T01:CDS
ATATAAGGTCTCATGAACTC+CGG 0.612278 3:-62561750 None:intergenic
AACACATGCAGCTGTTGGAG+TGG 0.617662 3:+62566679 MsG0380014924.01.T01:CDS
TTTGCCTGAAGGGTTGCCGG+TGG 0.631830 3:+62563982 MsG0380014924.01.T01:CDS
TCTTCATCCATACCCATGTG+TGG 0.637835 3:-62561828 None:intergenic
GTCGCCTCACGGTAAAGGTG+CGG 0.638794 3:+62564111 MsG0380014924.01.T01:CDS
GGGAATGGAACAGAAATGAG+GGG 0.638982 3:+62568015 MsG0380014924.01.T01:CDS
CGAGTTGCAGCTCCACACAT+GGG 0.639819 3:+62561816 MsG0380014924.01.T01:CDS
ACATGCTAAAGAACTTACAA+TGG 0.647929 3:+62566945 MsG0380014924.01.T01:CDS
TTACCGTGAGGCGACCACAT+TGG 0.650529 3:-62564103 None:intergenic
GCATGATGATATGATGGTAG+GGG 0.656006 3:+62567229 MsG0380014924.01.T01:CDS
GGAATGGAACAGAAATGAGG+GGG 0.689590 3:+62568016 MsG0380014924.01.T01:CDS
GCTTCCTCTAAACTGTATCG+AGG 0.702408 3:-62567329 None:intergenic
GCAAAAGAATGGACTCATGG+AGG 0.714182 3:+62565113 MsG0380014924.01.T01:CDS
GTGTTGTTGATCCGCCAATG+TGG 0.743316 3:+62564089 MsG0380014924.01.T01:CDS
AAAACCGCACCTTTACCGTG+AGG 0.757305 3:-62564115 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTATATTATTAATTA+AGG - Chr3:62565897-62565916 None:intergenic 0.0%
!! AATTAAATATACAAATAAGT+AGG - Chr3:62566365-62566384 None:intergenic 10.0%
!! TTTATCAATAAAAAATGTAT+AGG - Chr3:62567008-62567027 None:intergenic 10.0%
!!! AATCTTTTTTAAATTTTGTA+GGG + Chr3:62564970-62564989 MsG0380014924.01.T01:CDS 10.0%
!! AAAATTAATACTTCTACTTA+AGG - Chr3:62567675-62567694 None:intergenic 15.0%
!! AAGAAACATCAATATTATTA+TGG - Chr3:62568123-62568142 None:intergenic 15.0%
!! ATATAACTTTAGTTACATAT+TGG - Chr3:62562516-62562535 None:intergenic 15.0%
!! ATATTCTTTCAAAAGATATT+AGG - Chr3:62567826-62567845 None:intergenic 15.0%
!! GAAAAAGATATAAATATACA+AGG - Chr3:62567648-62567667 None:intergenic 15.0%
!! TAAAACTGTTTATTATTCTT+AGG + Chr3:62562875-62562894 MsG0380014924.01.T01:intron 15.0%
!! TCATAATAAAACAAAATGAA+AGG - Chr3:62562612-62562631 None:intergenic 15.0%
!!! AAAATTTACTTTTTATGCAA+TGG + Chr3:62567994-62568013 MsG0380014924.01.T01:CDS 15.0%
!!! AAATTTACTTTTTATGCAAT+GGG + Chr3:62567995-62568014 MsG0380014924.01.T01:CDS 15.0%
!!! ATAAATATATGACTTTTATG+CGG + Chr3:62562543-62562562 MsG0380014924.01.T01:intron 15.0%
!!! ATCTTTTTTAAATTTTGTAG+GGG + Chr3:62564971-62564990 MsG0380014924.01.T01:CDS 15.0%
!!! GAATCTTTTTTAAATTTTGT+AGG + Chr3:62564969-62564988 MsG0380014924.01.T01:CDS 15.0%
!!! TATTTTTTACTATGATAACT+AGG + Chr3:62567758-62567777 MsG0380014924.01.T01:intron 15.0%
!!! TGATTTTTGATTTTTTTTGT+GGG + Chr3:62563906-62563925 MsG0380014924.01.T01:intron 15.0%
!!! TTGATTTTTGATTTTTTTTG+TGG + Chr3:62563905-62563924 MsG0380014924.01.T01:intron 15.0%
!! AAAAATTTGGGAATGTTAAA+TGG + Chr3:62561775-62561794 MsG0380014924.01.T01:CDS 20.0%
!! AAAATTTGGGAATGTTAAAT+GGG + Chr3:62561776-62561795 MsG0380014924.01.T01:CDS 20.0%
!! AACAATGATACATTACAAAT+AGG - Chr3:62567522-62567541 None:intergenic 20.0%
!! AGACCTTATATTGAAAAATT+TGG + Chr3:62561762-62561781 MsG0380014924.01.T01:CDS 20.0%
!! CTGTTTGTCATTATTATTTA+AGG + Chr3:62567357-62567376 MsG0380014924.01.T01:CDS 20.0%
!! CTTAGAAATGAACTATATTT+AGG + Chr3:62566026-62566045 MsG0380014924.01.T01:intron 20.0%
!! GACCTTATATTGAAAAATTT+GGG + Chr3:62561763-62561782 MsG0380014924.01.T01:CDS 20.0%
!! GTGACTATATACAAATATAT+AGG + Chr3:62561904-62561923 MsG0380014924.01.T01:intron 20.0%
!! TAGTTATGTTATAGTATTGT+GGG + Chr3:62563146-62563165 MsG0380014924.01.T01:intron 20.0%
!! TATAAAAACACAAGAAAATC+AGG - Chr3:62567920-62567939 None:intergenic 20.0%
!! TATACAAATATATAGGTTTG+AGG + Chr3:62561911-62561930 MsG0380014924.01.T01:intron 20.0%
!! TTAGTTATGTTATAGTATTG+TGG + Chr3:62563145-62563164 MsG0380014924.01.T01:intron 20.0%
!! TTATAGAAATATACCATGTT+TGG - Chr3:62564759-62564778 None:intergenic 20.0%
!! TTTCAGTATCAATCAAAAAA+GGG - Chr3:62567857-62567876 None:intergenic 20.0%
!!! AACATTTTTGTTAAACGTTT+TGG - Chr3:62563484-62563503 None:intergenic 20.0%
!!! AAGTTAACTTTTCTCAAAAT+TGG + Chr3:62566811-62566830 MsG0380014924.01.T01:intron 20.0%
!!! AATATGAAACACAATTTTCA+AGG - Chr3:62567897-62567916 None:intergenic 20.0%
!!! AATGAAATTGTTGTTGTATA+TGG - Chr3:62564656-62564675 None:intergenic 20.0%
!!! AATTCTTCATTTTCTTTTGA+AGG - Chr3:62562355-62562374 None:intergenic 20.0%
!!! AGAATTTGAAGTTATTCAAT+AGG + Chr3:62562369-62562388 MsG0380014924.01.T01:intron 20.0%
!!! AGTTAACTTTTCTCAAAATT+GGG + Chr3:62566812-62566831 MsG0380014924.01.T01:intron 20.0%
!!! GTTTCTCTAATAGTTTTTTT+AGG - Chr3:62564441-62564460 None:intergenic 20.0%
!!! TCATAATATGATTTTGAAGA+AGG + Chr3:62566326-62566345 MsG0380014924.01.T01:intron 20.0%
!!! TTCATGTTTATTTTGAAAGA+TGG + Chr3:62562157-62562176 MsG0380014924.01.T01:intron 20.0%
!!! TTCCCAAATTTTTCAATATA+AGG - Chr3:62561768-62561787 None:intergenic 20.0%
! AAAACATTCAAAGTTACTCT+GGG - Chr3:62566475-62566494 None:intergenic 25.0%
! AAACATGAAGAAAATGATCA+GGG - Chr3:62562146-62562165 None:intergenic 25.0%
! AAACTCATAATCTTACTTTG+AGG - Chr3:62565199-62565218 None:intergenic 25.0%
! AACGTTTAACAAAAATGTTG+CGG + Chr3:62563485-62563504 MsG0380014924.01.T01:intron 25.0%
! AAGATGAAGTTTCAATAGAT+AGG + Chr3:62562395-62562414 MsG0380014924.01.T01:intron 25.0%
! AAGCAAATTAAACAGATTAG+TGG - Chr3:62568204-62568223 None:intergenic 25.0%
! ATAAGTTGTTTATCCAAACA+TGG + Chr3:62564743-62564762 MsG0380014924.01.T01:intron 25.0%
! ATAATAATGACAAACAGTCT+CGG - Chr3:62567354-62567373 None:intergenic 25.0%
! ATAGATTTACAAGTGCATAT+CGG - Chr3:62567553-62567572 None:intergenic 25.0%
! ATATATTGTCATGATTATGC+AGG + Chr3:62566183-62566202 MsG0380014924.01.T01:intron 25.0%
! ATCATAGGATAGGATAAAAT+TGG + Chr3:62568161-62568180 MsG0380014924.01.T01:three_prime_UTR 25.0%
! ATGACTATCTTAATATACAC+AGG + Chr3:62567129-62567148 MsG0380014924.01.T01:intron 25.0%
! ATGTAAACCAGTTATTATAC+TGG - Chr3:62566879-62566898 None:intergenic 25.0%
! CAATGTTGATGTATACATAT+TGG + Chr3:62564913-62564932 MsG0380014924.01.T01:intron 25.0%
! CGTCTTAACTATTTAATGAA+TGG + Chr3:62561936-62561955 MsG0380014924.01.T01:intron 25.0%
! GTTTCAGTATCAATCAAAAA+AGG - Chr3:62567858-62567877 None:intergenic 25.0%
! TAAACATGAAGAAAATGATC+AGG - Chr3:62562147-62562166 None:intergenic 25.0%
! TACTCTAAACTTACTTCTTT+GGG + Chr3:62567076-62567095 MsG0380014924.01.T01:intron 25.0%
! TATAGTTCATTTCTAAGCAT+TGG - Chr3:62566023-62566042 None:intergenic 25.0%
! TATTAGAGAAACTATCAAGA+AGG + Chr3:62564449-62564468 MsG0380014924.01.T01:intron 25.0%
! TCAAATATGCCAATTTAAAC+AGG + Chr3:62564873-62564892 MsG0380014924.01.T01:intron 25.0%
! TCTTTCAAAAGATATTAGGT+AGG - Chr3:62567822-62567841 None:intergenic 25.0%
! TGCTTATGTATAGACTATAT+GGG + Chr3:62564216-62564235 MsG0380014924.01.T01:intron 25.0%
! TTACTCTAAACTTACTTCTT+TGG + Chr3:62567075-62567094 MsG0380014924.01.T01:intron 25.0%
!! AACAATTTTACATGACATGT+GGG - Chr3:62566224-62566243 None:intergenic 25.0%
!! TAACAATTTTACATGACATG+TGG - Chr3:62566225-62566244 None:intergenic 25.0%
!! TTTTCAACAAATAAAACACG+TGG + Chr3:62563329-62563348 MsG0380014924.01.T01:intron 25.0%
!! TTTTTATATTTGACAGGCAA+AGG + Chr3:62567932-62567951 MsG0380014924.01.T01:intron 25.0%
!! TTTTTGTACAAATACTTGAG+AGG - Chr3:62562814-62562833 None:intergenic 25.0%
!!! AATGTAACACCATTTTTTTG+TGG + Chr3:62562490-62562509 MsG0380014924.01.T01:intron 25.0%
!!! ATACATCGACATATTTTTTG+TGG + Chr3:62562462-62562481 MsG0380014924.01.T01:intron 25.0%
!!! CTTGTGTTTTTATATTTGAC+AGG + Chr3:62567926-62567945 MsG0380014924.01.T01:intron 25.0%
!!! TATGATTTTGAAGAAGGAAA+AGG + Chr3:62566332-62566351 MsG0380014924.01.T01:intron 25.0%
!!! TGAACATCATTTTAACATCA+AGG - Chr3:62566784-62566803 None:intergenic 25.0%
!!! TGATTTGATTCTTTTTTCGA+CGG - Chr3:62562307-62562326 None:intergenic 25.0%
!!! TTAAGCTTTGTTTTTCATTG+TGG + Chr3:62563846-62563865 MsG0380014924.01.T01:intron 25.0%
!!! TTCAAATCTAACTTGTTAGT+GGG - Chr3:62562745-62562764 None:intergenic 25.0%
!!! TTTTTTCCTCCTAAAAATAG+TGG + Chr3:62561962-62561981 MsG0380014924.01.T01:intron 25.0%
AAACTAGATTTAGGTGGTTT+GGG + Chr3:62564332-62564351 MsG0380014924.01.T01:intron 30.0%
AAATACTTTAATACCTCCTG+CGG - Chr3:62563289-62563308 None:intergenic 30.0%
AACATGAAGAAAATGATCAG+GGG - Chr3:62562145-62562164 None:intergenic 30.0%
AACTAGGATCTATCATACAT+TGG + Chr3:62567774-62567793 MsG0380014924.01.T01:intron 30.0%
AAGCATTCACAGAAGATAAT+TGG + Chr3:62567968-62567987 MsG0380014924.01.T01:CDS 30.0%
AATGATGCATGATGATATGA+TGG + Chr3:62567223-62567242 MsG0380014924.01.T01:CDS 30.0%
ACAGGCAATGTATTTCTTAT+AGG - Chr3:62565474-62565493 None:intergenic 30.0%
ACATATTGGCCACAAAAAAA+TGG - Chr3:62562502-62562521 None:intergenic 30.0%
ACATGCTAAAGAACTTACAA+TGG + Chr3:62566945-62566964 MsG0380014924.01.T01:CDS 30.0%
ACATTGAAAGTAATCGAGTA+AGG - Chr3:62564899-62564918 None:intergenic 30.0%
ACTGTACTAATATAGTAACC+TGG - Chr3:62566251-62566270 None:intergenic 30.0%
AGAAGAGTAGATTAGATAGA+GGG + Chr3:62564388-62564407 MsG0380014924.01.T01:intron 30.0%
ATAAAACAGCATACGATGTT+TGG + Chr3:62564306-62564325 MsG0380014924.01.T01:intron 30.0%
ATAGACTATATGGGTATGTT+TGG + Chr3:62564225-62564244 MsG0380014924.01.T01:intron 30.0%
ATATTTGATCCAATCCCATT+AGG + Chr3:62566560-62566579 MsG0380014924.01.T01:CDS 30.0%
ATGAAAAGTGGTGACATTAT+CGG + Chr3:62561999-62562018 MsG0380014924.01.T01:intron 30.0%
ATGGGATTGGATCAAATATT+TGG - Chr3:62566559-62566578 None:intergenic 30.0%
ATTCAAATCACTTGAAGTAG+GGG + Chr3:62564411-62564430 MsG0380014924.01.T01:intron 30.0%
ATTGGATCAAATATTTGGCA+TGG - Chr3:62566554-62566573 None:intergenic 30.0%
CAAAACATTCAAAGTTACTC+TGG - Chr3:62566476-62566495 None:intergenic 30.0%
CAATTTATAGAGAGTTGCAT+AGG + Chr3:62565362-62565381 MsG0380014924.01.T01:intron 30.0%
CAGTACTTTACTTGATTCTT+GGG - Chr3:62563355-62563374 None:intergenic 30.0%
CATGTAAAATTGTTAGTACC+AGG + Chr3:62566230-62566249 MsG0380014924.01.T01:intron 30.0%
CTTATCTCATTAAATGCAGT+CGG - Chr3:62564550-62564569 None:intergenic 30.0%
CTTCTAACTACAACATTCAA+AGG - Chr3:62564373-62564392 None:intergenic 30.0%
GACATTACATTAACGATACA+CGG - Chr3:62563080-62563099 None:intergenic 30.0%
GACTGCATTTAATGAGATAA+GGG + Chr3:62564549-62564568 MsG0380014924.01.T01:intron 30.0%
GAGCTATATTATCATAGGAT+AGG + Chr3:62568151-62568170 MsG0380014924.01.T01:three_prime_UTR 30.0%
GATTCAAATCACTTGAAGTA+GGG + Chr3:62564410-62564429 MsG0380014924.01.T01:intron 30.0%
GTAAGTTCTTTAGCATGTAT+TGG - Chr3:62566943-62566962 None:intergenic 30.0%
GTACAATGAATCCTACTTAA+AGG + Chr3:62566523-62566542 MsG0380014924.01.T01:CDS 30.0%
GTCATGAGCTATATTATCAT+AGG + Chr3:62568146-62568165 MsG0380014924.01.T01:three_prime_UTR 30.0%
GTGCTTATGTATAGACTATA+TGG + Chr3:62564215-62564234 MsG0380014924.01.T01:intron 30.0%
GTTAAATGGGATGATAATTG+CGG + Chr3:62561789-62561808 MsG0380014924.01.T01:CDS 30.0%
GTTTGGTAGAAACTAGATTT+AGG + Chr3:62564323-62564342 MsG0380014924.01.T01:intron 30.0%
TAAACTACCAGGTCAATTAT+AGG - Chr3:62565451-62565470 None:intergenic 30.0%
TAGAAGAGTAGATTAGATAG+AGG + Chr3:62564387-62564406 MsG0380014924.01.T01:intron 30.0%
TATAAGTAATGCTATCAACC+TGG - Chr3:62567406-62567425 None:intergenic 30.0%
TATACAAGGTCATTAATCCA+TGG - Chr3:62567634-62567653 None:intergenic 30.0%
TCAGTACTTTACTTGATTCT+TGG - Chr3:62563356-62563375 None:intergenic 30.0%
TCATATAACATTGTACCTTC+AGG - Chr3:62566635-62566654 None:intergenic 30.0%
TGATAAACCTATACGCATAT+AGG + Chr3:62566270-62566289 MsG0380014924.01.T01:intron 30.0%
TGATCAATTGCAATAAGAAC+AGG - Chr3:62566746-62566765 None:intergenic 30.0%
TGTATACAAAACCATAGCAT+TGG - Chr3:62566158-62566177 None:intergenic 30.0%
TTAGTGATCAAATAAACTCC+CGG - Chr3:62562580-62562599 None:intergenic 30.0%
TTTCACCTGCTCTTAATATT+TGG + Chr3:62567709-62567728 MsG0380014924.01.T01:intron 30.0%
TTTCTTATAGGTAAACTACC+AGG - Chr3:62565462-62565481 None:intergenic 30.0%
TTTCTTCAACAAATGATCCA+TGG + Chr3:62567614-62567633 MsG0380014924.01.T01:intron 30.0%
! AATATATGACTTTTATGCGG+TGG + Chr3:62562546-62562565 MsG0380014924.01.T01:intron 30.0%
! AGTAAGCAGAAAGCATATAA+TGG - Chr3:62567179-62567198 None:intergenic 30.0%
! CAGAGTAACTTTGAATGTTT+TGG + Chr3:62566474-62566493 MsG0380014924.01.T01:intron 30.0%
! GTGTTTTCTTTATGATGCTT+TGG + Chr3:62565328-62565347 MsG0380014924.01.T01:intron 30.0%
! TGCTAAATACACTTTTCAGT+TGG + Chr3:62565261-62565280 MsG0380014924.01.T01:intron 30.0%
! TGTTTGCTAAATTCATGTTG+AGG + Chr3:62564938-62564957 MsG0380014924.01.T01:intron 30.0%
!! AGAGGTAGTTTGATTTTGAA+AGG - Chr3:62562796-62562815 None:intergenic 30.0%
!! ATAGGCTTTGGATATTGTTT+GGG + Chr3:62564276-62564295 MsG0380014924.01.T01:intron 30.0%
!! CTTCAAATCTAACTTGTTAG+TGG - Chr3:62562746-62562765 None:intergenic 30.0%
!! GAGGTATTAAAGTATTTTCG+TGG + Chr3:62563292-62563311 MsG0380014924.01.T01:intron 30.0%
!! GTAGTTTGATTTTGAAAGGA+TGG - Chr3:62562792-62562811 None:intergenic 30.0%
!! GTTGAAAGATGTTGATTCAA+TGG + Chr3:62566604-62566623 MsG0380014924.01.T01:CDS 30.0%
!! GTTTTGGATAATTTTCTTCC+AGG + Chr3:62566490-62566509 MsG0380014924.01.T01:intron 30.0%
!! TACTTTTTATGCAATGGGAA+TGG + Chr3:62568000-62568019 MsG0380014924.01.T01:CDS 30.0%
!! TCAAATCTAACTTGTTAGTG+GGG - Chr3:62562744-62562763 None:intergenic 30.0%
!!! AGAGATTTGGTGTCATTTTA+TGG + Chr3:62562972-62562991 MsG0380014924.01.T01:intron 30.0%
!!! AGGATATGACACTTTTTTGT+TGG + Chr3:62562415-62562434 MsG0380014924.01.T01:intron 30.0%
!!! GAGACTTTTTTCTCAATTAG+AGG + Chr3:62562096-62562115 MsG0380014924.01.T01:intron 30.0%
!!! TGAATGATTGTTTTTTGCTG+CGG - Chr3:62563524-62563543 None:intergenic 30.0%
AAAAACCCATCTCTCAATGT+AGG + Chr3:62563718-62563737 MsG0380014924.01.T01:intron 35.0%
AAAGCTTCGTAAAGACTTAC+CGG + Chr3:62567277-62567296 MsG0380014924.01.T01:CDS 35.0%
AAGAGAGTCATCCTATAGTT+CGG + Chr3:62561847-62561866 MsG0380014924.01.T01:CDS 35.0%
AATCAACATTCTCTCCAAGT+AGG - Chr3:62566131-62566150 None:intergenic 35.0%
ACAGTCAGAACACATTTCAT+TGG - Chr3:62568097-62568116 None:intergenic 35.0%
AGAGACCAAATATTAAGAGC+AGG - Chr3:62567717-62567736 None:intergenic 35.0%
AGGTACAATGTTATATGAGC+TGG + Chr3:62566637-62566656 MsG0380014924.01.T01:CDS 35.0%
ATATAAGGTCTCATGAACTC+CGG - Chr3:62561753-62561772 None:intergenic 35.0%
ATGCATGATGATATGATGGT+AGG + Chr3:62567227-62567246 MsG0380014924.01.T01:CDS 35.0%
CATTGTACTTCATGAAATCC+TGG - Chr3:62566511-62566530 None:intergenic 35.0%
CCAAATCTCTGCTGAAAATT+TGG - Chr3:62562962-62562981 None:intergenic 35.0%
CGACTGCATTTAATGAGATA+AGG + Chr3:62564548-62564567 MsG0380014924.01.T01:intron 35.0%
CTGTTACAATTCGTTCTTGT+CGG + Chr3:62566917-62566936 MsG0380014924.01.T01:CDS 35.0%
GAAACTAGATTTAGGTGGTT+TGG + Chr3:62564331-62564350 MsG0380014924.01.T01:intron 35.0%
GAGTTTACCTATAATTGACC+TGG + Chr3:62565441-62565460 MsG0380014924.01.T01:intron 35.0%
GATTAGAGATCTAGAGATCT+AGG + Chr3:62565775-62565794 MsG0380014924.01.T01:intron 35.0%
GCTTATGAAAAATGCACAAC+AGG - Chr3:62564578-62564597 None:intergenic 35.0%
GGATTCAAATCACTTGAAGT+AGG + Chr3:62564409-62564428 MsG0380014924.01.T01:intron 35.0%
GTAAGTGCAGATATCGTTAT+TGG - Chr3:62563794-62563813 None:intergenic 35.0%
GTTATTGGTGAGCTTAGATA+AGG - Chr3:62563779-62563798 None:intergenic 35.0%
GTTTACATTCAGTGAGTATG+AGG + Chr3:62566891-62566910 MsG0380014924.01.T01:CDS 35.0%
TAAGTTCTCCAAGATAGCTT+AGG + Chr3:62564617-62564636 MsG0380014924.01.T01:intron 35.0%
TATCTTCTGTGAATGCTTCA+CGG - Chr3:62567966-62567985 None:intergenic 35.0%
TGCATGATGATATGATGGTA+GGG + Chr3:62567228-62567247 MsG0380014924.01.T01:CDS 35.0%
TGGTAGAAACTAGATTTAGG+TGG + Chr3:62564326-62564345 MsG0380014924.01.T01:intron 35.0%
TTATAGAGAGTTGCATAGGA+TGG + Chr3:62565366-62565385 MsG0380014924.01.T01:intron 35.0%
TTATCTACTGACATAGGCTT+TGG + Chr3:62564264-62564283 MsG0380014924.01.T01:intron 35.0%
TTGAGCTTATCTACTGACAT+AGG + Chr3:62564258-62564277 MsG0380014924.01.T01:intron 35.0%
TTTCCTCCTAAAAATAGTGG+TGG + Chr3:62561965-62561984 MsG0380014924.01.T01:intron 35.0%
! ACACTTTTCAGTTGGAAGTT+CGG + Chr3:62565269-62565288 MsG0380014924.01.T01:intron 35.0%
! AGAACAGAGATGAGATTTTG+TGG - Chr3:62565695-62565714 None:intergenic 35.0%
! ATTTTGTAGGGGTCAAAGTT+AGG + Chr3:62564982-62565001 MsG0380014924.01.T01:CDS 35.0%
! CCAAATTTTCAGCAGAGATT+TGG + Chr3:62562959-62562978 MsG0380014924.01.T01:intron 35.0%
! GCTTTTAATCTTGTTCGCAA+AGG + Chr3:62568220-62568239 MsG0380014924.01.T01:three_prime_UTR 35.0%
! TAAGTGTCACTCACAATCAA+TGG + Chr3:62563215-62563234 MsG0380014924.01.T01:intron 35.0%
! TCTATACACGATGATGGTAT+TGG - Chr3:62562187-62562206 None:intergenic 35.0%
! TCTTTCTTTTTGTGCCTACT+TGG + Chr3:62566114-62566133 MsG0380014924.01.T01:intron 35.0%
! TTGCTGGTGTGAGATTTTTA+AGG - Chr3:62563549-62563568 None:intergenic 35.0%
!! AAATCTAACTTGTTAGTGGG+GGG - Chr3:62562742-62562761 None:intergenic 35.0%
!! CAAATCTAACTTGTTAGTGG+GGG - Chr3:62562743-62562762 None:intergenic 35.0%
!! CATAGGCTTTGGATATTGTT+TGG + Chr3:62564275-62564294 MsG0380014924.01.T01:intron 35.0%
!! GAAGGAGTATTGCACAAAAT+TGG - Chr3:62562337-62562356 None:intergenic 35.0%
!! GTCAAGGGAATTTGAGTTTT+TGG + Chr3:62562237-62562256 MsG0380014924.01.T01:intron 35.0%
!! GTTGATTTTCACCAATGCTA+TGG + Chr3:62566144-62566163 MsG0380014924.01.T01:intron 35.0%
!! GTTGTTTTCCTAAGCTATCT+TGG - Chr3:62564628-62564647 None:intergenic 35.0%
!! TAGGCTTTGGATATTGTTTG+GGG + Chr3:62564277-62564296 MsG0380014924.01.T01:intron 35.0%
!! TTTGTGGGTTTTGTGTTTCT+GGG + Chr3:62563921-62563940 MsG0380014924.01.T01:intron 35.0%
!! TTTTGTGGGTTTTGTGTTTC+TGG + Chr3:62563920-62563939 MsG0380014924.01.T01:intron 35.0%
!!! AGGAAGCAAGTTGTTTTAGA+TGG + Chr3:62565002-62565021 MsG0380014924.01.T01:CDS 35.0%
!!! GAGAGATGGGTTTTTTTCAT+CGG - Chr3:62563713-62563732 None:intergenic 35.0%
!!! GTTGGTTTTGTTTTACAGGA+AGG + Chr3:62563943-62563962 MsG0380014924.01.T01:intron 35.0%
!!! GTTTTGTTTTACAGGAAGGA+GGG + Chr3:62563947-62563966 MsG0380014924.01.T01:intron 35.0%
AAAATTTGGACAGTCGCAGT+TGG - Chr3:62562948-62562967 None:intergenic 40.0%
AAAGAGATAGCATGTACGTG+AGG - Chr3:62563822-62563841 None:intergenic 40.0%
AAGCAGACACAGAATTAGAC+TGG - Chr3:62567488-62567507 None:intergenic 40.0%
ACATTGCCTGTTGTCAATAG+CGG + Chr3:62565483-62565502 MsG0380014924.01.T01:intron 40.0%
AGGCAAAAGCAGAACAAAAG+CGG + Chr3:62565581-62565600 MsG0380014924.01.T01:intron 40.0%
AGTCTCACATATACCGAGTT+TGG - Chr3:62562082-62562101 None:intergenic 40.0%
ATAAGTGCTCACCGAACTAT+AGG - Chr3:62561861-62561880 None:intergenic 40.0%
ATGCTATCAACCTGGTAAAC+AGG - Chr3:62567398-62567417 None:intergenic 40.0%
ATGGGAATGGAACAGAAATG+AGG + Chr3:62568013-62568032 MsG0380014924.01.T01:CDS 40.0%
ATGTTCCTAGCGCAAAAGAA+TGG + Chr3:62565102-62565121 MsG0380014924.01.T01:CDS 40.0%
CAGTTGACAAATCCCAAACT+CGG + Chr3:62562066-62562085 MsG0380014924.01.T01:intron 40.0%
CCAGTTATTATACTGGAGAC+AGG - Chr3:62566872-62566891 None:intergenic 40.0%
CCTGTCTCCAGTATAATAAC+TGG + Chr3:62566869-62566888 MsG0380014924.01.T01:intron 40.0%
CGACAAGAACGAATTGTAAC+AGG - Chr3:62566919-62566938 None:intergenic 40.0%
CGAGTAAGGCCTGTTTAAAT+TGG - Chr3:62564885-62564904 None:intergenic 40.0%
GAACTGCATGCAATGAAAAG+TGG + Chr3:62561987-62562006 MsG0380014924.01.T01:intron 40.0%
GATTCAATGGCAATTCCTGA+AGG + Chr3:62566617-62566636 MsG0380014924.01.T01:CDS 40.0%
GCAATGCATAGTTGTCAAAG+CGG - Chr3:62566001-62566020 None:intergenic 40.0%
GCATGATGATATGATGGTAG+GGG + Chr3:62567229-62567248 MsG0380014924.01.T01:CDS 40.0%
GGATCTAGAGATCAATGAGT+TGG + Chr3:62564470-62564489 MsG0380014924.01.T01:intron 40.0%
GTCTCACATATACCGAGTTT+GGG - Chr3:62562081-62562100 None:intergenic 40.0%
GTTTCCTCGATACAGTTTAG+AGG + Chr3:62567325-62567344 MsG0380014924.01.T01:CDS 40.0%
TAAAGACTTACCGGATGTAC+CGG + Chr3:62567286-62567305 MsG0380014924.01.T01:CDS 40.0%
TACCATCATCGTGTATAGAG+TGG + Chr3:62562188-62562207 MsG0380014924.01.T01:intron 40.0%
TAGATGGTCCTGTTAGTTGT+GGG + Chr3:62565018-62565037 MsG0380014924.01.T01:CDS 40.0%
TAGGTAAACTCCAATGACAC+TGG - Chr3:62565432-62565451 None:intergenic 40.0%
TAGTTGAGAGATGAGATTGC+TGG - Chr3:62563565-62563584 None:intergenic 40.0%
TGCTATCAACCTGGTAAACA+GGG - Chr3:62567397-62567416 None:intergenic 40.0%
TGCTTTCTGCTTACTATTGC+AGG + Chr3:62567184-62567203 MsG0380014924.01.T01:intron 40.0%
TGGGAATGGAACAGAAATGA+GGG + Chr3:62568014-62568033 MsG0380014924.01.T01:CDS 40.0%
TTAGATGGTCCTGTTAGTTG+TGG + Chr3:62565017-62565036 MsG0380014924.01.T01:CDS 40.0%
TTATATGAGCTGGTGAAGAC+TGG + Chr3:62566647-62566666 MsG0380014924.01.T01:CDS 40.0%
TTATGCGGTGGATAAATCAC+CGG + Chr3:62562558-62562577 MsG0380014924.01.T01:intron 40.0%
TTCCACTCTATACACGATGA+TGG - Chr3:62562193-62562212 None:intergenic 40.0%
TTCTCTCATTCAACAGCTGT+AGG + Chr3:62567254-62567273 MsG0380014924.01.T01:CDS 40.0%
TTGTTCGTCGAAGAAGATGT+CGG - Chr3:62563668-62563687 None:intergenic 40.0%
! ACAGGTCAACTGTTTGACTT+TGG + Chr3:62567147-62567166 MsG0380014924.01.T01:intron 40.0%
! AGATGAATCAGAGAGAGTGT+GGG - Chr3:62563455-62563474 None:intergenic 40.0%
! ATTGTGGCATTTTCTCGAAC+AGG + Chr3:62563862-62563881 MsG0380014924.01.T01:intron 40.0%
! CAATGAGTTGGAGAAAGACA+TGG + Chr3:62564482-62564501 MsG0380014924.01.T01:intron 40.0%
! TATTGCAGGTGAAGGCTTTT+AGG + Chr3:62567198-62567217 MsG0380014924.01.T01:intron 40.0%
!! AGGCTTTGGATATTGTTTGG+GGG + Chr3:62564278-62564297 MsG0380014924.01.T01:intron 40.0%
!! GCAGTTCCACCACTATTTTT+AGG - Chr3:62561974-62561993 None:intergenic 40.0%
!! GGAAAGAGAGCTTTATTACG+TGG + Chr3:62567097-62567116 MsG0380014924.01.T01:intron 40.0%
!! GTTTCTCTACTTTTGCGATG+AGG - Chr3:62562285-62562304 None:intergenic 40.0%
!!! AGATGGGTTTTTTTCATCGG+CGG - Chr3:62563710-62563729 None:intergenic 40.0%
!!! CTGGGTTGGTTTTGTTTTAC+AGG + Chr3:62563939-62563958 MsG0380014924.01.T01:intron 40.0%
!!! GGTTTTGTTTTACAGGAAGG+AGG + Chr3:62563946-62563965 MsG0380014924.01.T01:intron 40.0%
!!! GTTCCACCACTATTTTTAGG+AGG - Chr3:62561971-62561990 None:intergenic 40.0%
!!! GTTTTGGAAGTGGGTTTTGT+GGG - Chr3:62563619-62563638 None:intergenic 40.0%
!!! TTGGAAGTTCGGTTTTGAGA+AGG + Chr3:62565280-62565299 MsG0380014924.01.T01:intron 40.0%
AAACGACTCTTAACTACCGC+AGG + Chr3:62563270-62563289 MsG0380014924.01.T01:intron 45.0%
AACATAGCACGAGCATCTAC+CGG - Chr3:62567308-62567327 None:intergenic 45.0%
AACCTTAGTCGTCCTCTTGA+AGG - Chr3:62562713-62562732 None:intergenic 45.0%
AAGAAGTCTCACAAGCGCTT+AGG + Chr3:62564845-62564864 MsG0380014924.01.T01:intron 45.0%
ATGCTCTTCCCACAACTAAC+AGG - Chr3:62565029-62565048 None:intergenic 45.0%
CAGATGAATCAGAGAGAGTG+TGG - Chr3:62563456-62563475 None:intergenic 45.0%
CTAGCTGCCTATATGCGTAT+AGG - Chr3:62566280-62566299 None:intergenic 45.0%
CTGCTTACTATTGCAGGTGA+AGG + Chr3:62567190-62567209 MsG0380014924.01.T01:intron 45.0%
CTGTTAAGTGATCCTGTCTC+AGG + Chr3:62562654-62562673 MsG0380014924.01.T01:intron 45.0%
GAACAAACACATGCAGCTGT+TGG + Chr3:62566674-62566693 MsG0380014924.01.T01:CDS 45.0%
GAAGCAATACAAGACTGGTG+AGG + Chr3:62562210-62562229 MsG0380014924.01.T01:intron 45.0%
GAGTGGAAGCAATACAAGAC+TGG + Chr3:62562205-62562224 MsG0380014924.01.T01:intron 45.0%
GATCCAATCCCATTAGGTGA+GGG + Chr3:62566566-62566585 MsG0380014924.01.T01:CDS 45.0%
GATGTCTGTCATCGCATGAA+AGG - Chr3:62568048-62568067 None:intergenic 45.0%
GCATGGCAGTTCCTTTAAGT+AGG - Chr3:62566537-62566556 None:intergenic 45.0%
GCTTCCTCTAAACTGTATCG+AGG - Chr3:62567332-62567351 None:intergenic 45.0%
GCTTGCAATGCTTGTTCAGT+GGG + Chr3:62565052-62565071 MsG0380014924.01.T01:CDS 45.0%
GGAATGGAACAGAAATGAGG+GGG + Chr3:62568016-62568035 MsG0380014924.01.T01:CDS 45.0%
GGCAAAAGCAGAACAAAAGC+GGG + Chr3:62565582-62565601 MsG0380014924.01.T01:intron 45.0%
GGGAATGGAACAGAAATGAG+GGG + Chr3:62568015-62568034 MsG0380014924.01.T01:CDS 45.0%
GGGTATGGAGAAGGAGTTTA+AGG + Chr3:62564003-62564022 MsG0380014924.01.T01:CDS 45.0%
GGTGAGCTTAGATAAGGAAG+TGG - Chr3:62563773-62563792 None:intergenic 45.0%
GTCATGATTATGCAGGCTAG+AGG + Chr3:62566190-62566209 MsG0380014924.01.T01:intron 45.0%
GTTAGACCGCTATTGACAAC+AGG - Chr3:62565492-62565511 None:intergenic 45.0%
TAAGTGATCCTGTCTCAGGA+TGG + Chr3:62562658-62562677 MsG0380014924.01.T01:intron 45.0%
TAGTTGTCAAAGCGGAAACG+CGG - Chr3:62565993-62566012 None:intergenic 45.0%
TATGCGGTGGATAAATCACC+GGG + Chr3:62562559-62562578 MsG0380014924.01.T01:intron 45.0%
TCTTCATCCATACCCATGTG+TGG - Chr3:62561831-62561850 None:intergenic 45.0%
TGATCCAATCCCATTAGGTG+AGG + Chr3:62566565-62566584 MsG0380014924.01.T01:CDS 45.0%
TTACACAGTCCCTGTTTACC+AGG + Chr3:62567385-62567404 MsG0380014924.01.T01:intron 45.0%
TTACTCTGGGTAATTAGCCG+AGG - Chr3:62566462-62566481 None:intergenic 45.0%
TTATTATCGCTGCTCGTAGC+TGG + Chr3:62565401-62565420 MsG0380014924.01.T01:intron 45.0%
TTGGAGTGGTAGTTCGTTTG+AGG + Chr3:62566693-62566712 MsG0380014924.01.T01:CDS 45.0%
TTGTCAATAGCGGTCTAACG+CGG + Chr3:62565493-62565512 MsG0380014924.01.T01:intron 45.0%
! AGAAAATGATCAGGGGCATG+TGG - Chr3:62562138-62562157 None:intergenic 45.0%
! AGCGCAAAAGAATGGACTCA+TGG + Chr3:62565110-62565129 MsG0380014924.01.T01:CDS 45.0%
! GAAAATGATCAGGGGCATGT+GGG - Chr3:62562137-62562156 None:intergenic 45.0%
! GAGTGTGGGAGATTTTGCTA+TGG - Chr3:62563441-62563460 None:intergenic 45.0%
! GCAAAAGAATGGACTCATGG+AGG + Chr3:62565113-62565132 MsG0380014924.01.T01:CDS 45.0%
! GCTTGTTCGTCAGAGCTTTT+TGG + Chr3:62564045-62564064 MsG0380014924.01.T01:CDS 45.0%
! GGTCAACTGTTTGACTTTGG+TGG + Chr3:62567150-62567169 MsG0380014924.01.T01:intron 45.0%
! GTATCCCATAGCTCTGTTTG+CGG - Chr3:62565155-62565174 None:intergenic 45.0%
! GTTTTACAGGAAGGAGGGAT+TGG + Chr3:62563952-62563971 MsG0380014924.01.T01:intron 45.0%
! TGAGTCCATTCTTTTGCGCT+AGG - Chr3:62565110-62565129 None:intergenic 45.0%
!! AGTGGGTTTTGTGGGTTTTG+AGG - Chr3:62563611-62563630 None:intergenic 45.0%
!! CTACTTTTGCGATGAGGTCT+TGG - Chr3:62562279-62562298 None:intergenic 45.0%
!! GTGGGTTTTGTGGGTTTTGA+GGG - Chr3:62563610-62563629 None:intergenic 45.0%
!!! GGTTTTGGAAGTGGGTTTTG+TGG - Chr3:62563620-62563639 None:intergenic 45.0%
!!! TGGATGCTGTTTTGCCTGAA+GGG + Chr3:62563972-62563991 MsG0380014924.01.T01:CDS 45.0%
!!! TGGGTTTTGTGTTTCTGGGT+TGG + Chr3:62563925-62563944 MsG0380014924.01.T01:intron 45.0%
!!! TTGGATGCTGTTTTGCCTGA+AGG + Chr3:62563971-62563990 MsG0380014924.01.T01:CDS 45.0%
!!! TTATTTGTATATTTAATTTT+TGG + Chr3:62566367-62566386 MsG0380014924.01.T01:intron 5.0%
AAAACCGCACCTTTACCGTG+AGG - Chr3:62564118-62564137 None:intergenic 50.0%
AACACATGCAGCTGTTGGAG+TGG + Chr3:62566679-62566698 MsG0380014924.01.T01:CDS 50.0%
AACTCCTTCTCCATACCCAC+CGG - Chr3:62564001-62564020 None:intergenic 50.0%
AGAACAAAAGCGGGTCAACG+CGG + Chr3:62565591-62565610 MsG0380014924.01.T01:intron 50.0%
AGCATCCGCAAACAGAGCTA+TGG + Chr3:62565147-62565166 MsG0380014924.01.T01:CDS 50.0%
CGCTTGCAATGCTTGTTCAG+TGG + Chr3:62565051-62565070 MsG0380014924.01.T01:CDS 50.0%
CGTTCTGTTACCAGCATCCT+CGG + Chr3:62566442-62566461 MsG0380014924.01.T01:intron 50.0%
CTTAGTCGTCCTCTTGAAGG+CGG - Chr3:62562710-62562729 None:intergenic 50.0%
GCATCCGCAAACAGAGCTAT+GGG + Chr3:62565148-62565167 MsG0380014924.01.T01:CDS 50.0%
GCTGGTAACTCCAGTGTCAT+TGG + Chr3:62565419-62565438 MsG0380014924.01.T01:intron 50.0%
TCTCTCAATGTAGGCCCCAA+TGG + Chr3:62563727-62563746 MsG0380014924.01.T01:intron 50.0%
TCTGATACTCCGCCTTCAAG+AGG + Chr3:62562698-62562717 MsG0380014924.01.T01:intron 50.0%
TGGGGCCTACATTGAGAGAT+GGG - Chr3:62563726-62563745 None:intergenic 50.0%
TTCGTCGAAGAAGATGTCGG+CGG - Chr3:62563665-62563684 None:intergenic 50.0%
TTGGGGCCTACATTGAGAGA+TGG - Chr3:62563727-62563746 None:intergenic 50.0%
! CAGCTTTTCCATCCTGAGAC+AGG - Chr3:62562669-62562688 None:intergenic 50.0%
! CTTTGAGGACATTCTCAGCC+TGG - Chr3:62565184-62565203 None:intergenic 50.0%
! GGCTAGAGAAGAAGGTTGGT+TGG + Chr3:62565073-62565092 MsG0380014924.01.T01:CDS 50.0%
! GTGTTGTTGATCCGCCAATG+TGG + Chr3:62564089-62564108 MsG0380014924.01.T01:CDS 50.0%
! TGTTTTGCCTGAAGGGTTGC+CGG + Chr3:62563979-62563998 MsG0380014924.01.T01:CDS 50.0%
!! AGTGGGCTAGAGAAGAAGGT+TGG + Chr3:62565069-62565088 MsG0380014924.01.T01:CDS 50.0%
!! GTTCAGTGGGCTAGAGAAGA+AGG + Chr3:62565065-62565084 MsG0380014924.01.T01:CDS 50.0%
!!! GGTTTTTTTCATCGGCGGTG+AGG - Chr3:62563705-62563724 None:intergenic 50.0%
!!! GTGGGTTTTGAGGGCTTTGT+TGG - Chr3:62563601-62563620 None:intergenic 50.0%
ACTCCAGCACCCTCACCTAA+TGG - Chr3:62566578-62566597 None:intergenic 55.0%
AGACTGGTGAGGCTGAGTCA+AGG + Chr3:62562221-62562240 MsG0380014924.01.T01:intron 55.0%
AGGAAGTGGCCGAAGTGAAG+AGG - Chr3:62563759-62563778 None:intergenic 55.0%
AGGACATTCTCAGCCTGGAC+AGG - Chr3:62565179-62565198 None:intergenic 55.0%
ATGTGGTCGCCTCACGGTAA+AGG + Chr3:62564106-62564125 MsG0380014924.01.T01:CDS 55.0%
CGACTCTTAACTACCGCAGG+AGG + Chr3:62563273-62563292 MsG0380014924.01.T01:intron 55.0%
CGAGCATCTACCGGTACATC+CGG - Chr3:62567299-62567318 None:intergenic 55.0%
CGAGTTGCAGCTCCACACAT+GGG + Chr3:62561816-62561835 MsG0380014924.01.T01:CDS 55.0%
CGCCTTCAAGAGGACGACTA+AGG + Chr3:62562708-62562727 MsG0380014924.01.T01:intron 55.0%
CTCCAGCACCCTCACCTAAT+GGG - Chr3:62566577-62566596 None:intergenic 55.0%
GAACAAAAGCGGGTCAACGC+GGG + Chr3:62565592-62565611 MsG0380014924.01.T01:intron 55.0%
GACTGGTGAGGCTGAGTCAA+GGG + Chr3:62562222-62562241 MsG0380014924.01.T01:intron 55.0%
GCACCCTCACCTAATGGGAT+TGG - Chr3:62566572-62566591 None:intergenic 55.0%
GCTATGGGATACACCTGTCC+AGG + Chr3:62565163-62565182 MsG0380014924.01.T01:CDS 55.0%
GGCAAAAAGCGGGTCAATGC+GGG + Chr3:62565613-62565632 MsG0380014924.01.T01:intron 55.0%
GGCAAAAAGCGGTTCAACGC+GGG + Chr3:62565634-62565653 MsG0380014924.01.T01:intron 55.0%
GGCCACCCCAAAAATTGACG+CGG - Chr3:62565962-62565981 None:intergenic 55.0%
GGGCAAAAAGCGGGTCAATG+CGG + Chr3:62565612-62565631 MsG0380014924.01.T01:intron 55.0%
GGGCAAAAAGCGGTTCAACG+CGG + Chr3:62565633-62565652 MsG0380014924.01.T01:intron 55.0%
GGGTAATTAGCCGAGGATGC+TGG - Chr3:62566455-62566474 None:intergenic 55.0%
GGGTCAATGCGGGCAAAAAG+CGG + Chr3:62565623-62565642 MsG0380014924.01.T01:intron 55.0%
GGTTCAACGCGGGCAAAAAG+CGG + Chr3:62565644-62565663 MsG0380014924.01.T01:intron 55.0%
GTTCAACGCGGGCAAAAAGC+GGG + Chr3:62565645-62565664 MsG0380014924.01.T01:intron 55.0%
TGCAGCTCCACACATGGGTA+TGG + Chr3:62561821-62561840 MsG0380014924.01.T01:CDS 55.0%
TTACCGTGAGGCGACCACAT+TGG - Chr3:62564106-62564125 None:intergenic 55.0%
TTTCATCGGCGGTGAGGTTG+CGG - Chr3:62563699-62563718 None:intergenic 55.0%
! ACCGCGCCGCGTCAATTTTT+GGG + Chr3:62565953-62565972 MsG0380014924.01.T01:intron 55.0%
! ATCCCATTAGGTGAGGGTGC+TGG + Chr3:62566572-62566591 MsG0380014924.01.T01:CDS 55.0%
! CTTTTGCCTAACGCGCGACT+CGG - Chr3:62565570-62565589 None:intergenic 55.0%
! GGGGCATGTGGGTTAAGTAG+TGG - Chr3:62562126-62562145 None:intergenic 55.0%
! TACCGCGCCGCGTCAATTTT+TGG + Chr3:62565952-62565971 MsG0380014924.01.T01:intron 55.0%
! TCGAGTTGCAGCTCCACACA+TGG + Chr3:62561815-62561834 MsG0380014924.01.T01:CDS 55.0%
!! TTAGGTGAGGGTGCTGGAGT+TGG + Chr3:62566578-62566597 MsG0380014924.01.T01:CDS 55.0%
!!! GTGGCAGGGGTTTTGGAAGT+GGG - Chr3:62563628-62563647 None:intergenic 55.0%
AATTGACGCGGCGCGGTAAG+CGG - Chr3:62565950-62565969 None:intergenic 60.0%
ATACCCACCGGCAACCCTTC+AGG - Chr3:62563989-62564008 None:intergenic 60.0%
CCCCAAAAATTGACGCGGCG+CGG - Chr3:62565957-62565976 None:intergenic 60.0%
GGGTCAACGCGGGCAAAAAG+CGG + Chr3:62565602-62565621 MsG0380014924.01.T01:intron 60.0%
GGTCAACGCGGGCAAAAAGC+GGG + Chr3:62565603-62565622 MsG0380014924.01.T01:intron 60.0%
GTCGAAGAAGATGTCGGCGG+TGG - Chr3:62563662-62563681 None:intergenic 60.0%
GTCGCCTCACGGTAAAGGTG+CGG + Chr3:62564111-62564130 MsG0380014924.01.T01:CDS 60.0%
GTTGCCGGTGGGTATGGAGA+AGG + Chr3:62563994-62564013 MsG0380014924.01.T01:CDS 60.0%
TGAAGGGTTGCCGGTGGGTA+TGG + Chr3:62563988-62564007 MsG0380014924.01.T01:CDS 60.0%
TGGCCGACGCCTCTTCACTT+CGG + Chr3:62563747-62563766 MsG0380014924.01.T01:intron 60.0%
TTGCCTGAAGGGTTGCCGGT+GGG + Chr3:62563983-62564002 MsG0380014924.01.T01:CDS 60.0%
TTTGCCTGAAGGGTTGCCGG+TGG + Chr3:62563982-62564001 MsG0380014924.01.T01:CDS 60.0%
! CCGCGCCGCGTCAATTTTTG+GGG + Chr3:62565954-62565973 MsG0380014924.01.T01:intron 60.0%
! GCGGGCGCTTTTACATGACG+CGG - Chr3:62565931-62565950 None:intergenic 60.0%
! TGGCCGAAGTGAAGAGGCGT+CGG - Chr3:62563753-62563772 None:intergenic 60.0%
!! AGTGAAGAGGCGTCGGCCAT+TGG - Chr3:62563746-62563765 None:intergenic 60.0%
!! CGCCGCGTCAATTTTTGGGG+TGG + Chr3:62565957-62565976 MsG0380014924.01.T01:intron 60.0%
!! GTGAAGAGGCGTCGGCCATT+GGG - Chr3:62563745-62563764 None:intergenic 60.0%
!! GTGAGGGTGCTGGAGTTGGT+TGG + Chr3:62566582-62566601 MsG0380014924.01.T01:CDS 60.0%
!! TGAAGAGGCGTCGGCCATTG+GGG - Chr3:62563744-62563763 None:intergenic 60.0%
!!! GGTGGCAGGGGTTTTGGAAG+TGG - Chr3:62563629-62563648 None:intergenic 60.0%
ATTGACGCGGCGCGGTAAGC+GGG - Chr3:62565949-62565968 None:intergenic 65.0%
CCGCCAATGTGGTCGCCTCA+CGG + Chr3:62564100-62564119 MsG0380014924.01.T01:CDS 65.0%
CCGTGAGGCGACCACATTGG+CGG - Chr3:62564103-62564122 None:intergenic 65.0%
GAAGATGTCGGCGGTGGCGT+TGG - Chr3:62563656-62563675 None:intergenic 65.0%
GTCAAAGCGGAAACGCGGCG+CGG - Chr3:62565988-62566007 None:intergenic 65.0%
ACGCGACCGAGTCGCGCGTT+AGG + Chr3:62565561-62565580 MsG0380014924.01.T01:intron 70.0%
CGGTCGCGTTCTGACGCGCT+AGG - Chr3:62565550-62565569 None:intergenic 70.0%
GGTCTAACGCGGCGCGATCG+CGG + Chr3:62565504-62565523 MsG0380014924.01.T01:intron 70.0%
! GATGTCGGCGGTGGCGTTGG+CGG - Chr3:62563653-62563672 None:intergenic 70.0%
!! GGCGGTGGTGGCAGGGGTTT+TGG - Chr3:62563635-62563654 None:intergenic 70.0%
!! TGGCGTTGGCGGTGGTGGCA+GGG - Chr3:62563642-62563661 None:intergenic 70.0%
!! GGCGTTGGCGGTGGTGGCAG+GGG - Chr3:62563641-62563660 None:intergenic 75.0%
!! GTGGCGTTGGCGGTGGTGGC+AGG - Chr3:62563643-62563662 None:intergenic 75.0%
! AACGCGGCGCGATCGCGGCG+CGG + Chr3:62565509-62565528 MsG0380014924.01.T01:intron 80.0%
! AGCGGAAACGCGGCGCGGCG+CGG - Chr3:62565983-62566002 None:intergenic 80.0%
!!! GGCGGTGGCGTTGGCGGTGG+TGG - Chr3:62563647-62563666 None:intergenic 80.0%
!!! GTCGGCGGTGGCGTTGGCGG+TGG - Chr3:62563650-62563669 None:intergenic 80.0%
! GGCGCGATCGCGGCGCGGAG+CGG + Chr3:62565514-62565533 MsG0380014924.01.T01:intron 85.0%
Chromosome Type Strat End Strand Name
Chr3 gene 62561747 62568275 62561747 ID=MsG0380014924.01;Name=MsG0380014924.01
Chr3 mRNA 62561747 62568275 62561747 ID=MsG0380014924.01.T01;Parent=MsG0380014924.01;Name=MsG0380014924.01.T01;_AED=0.38;_eAED=0.39;_QI=0|0.66|0.57|1|0.83|0.71|7|216|387
Chr3 exon 62561747 62561868 62561747 ID=MsG0380014924.01.T01:exon:8455;Parent=MsG0380014924.01.T01
Chr3 exon 62563961 62564132 62563961 ID=MsG0380014924.01.T01:exon:8456;Parent=MsG0380014924.01.T01
Chr3 exon 62564960 62565202 62564960 ID=MsG0380014924.01.T01:exon:8457;Parent=MsG0380014924.01.T01
Chr3 exon 62566512 62566766 62566512 ID=MsG0380014924.01.T01:exon:8458;Parent=MsG0380014924.01.T01
Chr3 exon 62566880 62566966 62566880 ID=MsG0380014924.01.T01:exon:8459;Parent=MsG0380014924.01.T01
Chr3 exon 62567206 62567378 62567206 ID=MsG0380014924.01.T01:exon:8460;Parent=MsG0380014924.01.T01
Chr3 exon 62567948 62568275 62567948 ID=MsG0380014924.01.T01:exon:8461;Parent=MsG0380014924.01.T01
Chr3 CDS 62561747 62561868 62561747 ID=MsG0380014924.01.T01:cds;Parent=MsG0380014924.01.T01
Chr3 CDS 62563961 62564132 62563961 ID=MsG0380014924.01.T01:cds;Parent=MsG0380014924.01.T01
Chr3 CDS 62564960 62565202 62564960 ID=MsG0380014924.01.T01:cds;Parent=MsG0380014924.01.T01
Chr3 CDS 62566512 62566766 62566512 ID=MsG0380014924.01.T01:cds;Parent=MsG0380014924.01.T01
Chr3 CDS 62566880 62566966 62566880 ID=MsG0380014924.01.T01:cds;Parent=MsG0380014924.01.T01
Chr3 CDS 62567206 62567378 62567206 ID=MsG0380014924.01.T01:cds;Parent=MsG0380014924.01.T01
Chr3 CDS 62567948 62568059 62567948 ID=MsG0380014924.01.T01:cds;Parent=MsG0380014924.01.T01
Chr3 three_prime_UTR 62568060 62568275 62568060 ID=MsG0380014924.01.T01:three_prime_utr;Parent=MsG0380014924.01.T01
Gene Sequence

>MsG0380014924.01.T01

ATGCCGGAGTTCATGAGACCTTATATTGAAAAATTTGGGAATGTTAAATGGGATGATAATTGCGGATTTCGAGTTGCAGCTCCACACATGGGTATGGATGAAGAGAGTCATCCTATAGTTCGGAAGGAGGGATTGGATGCTGTTTTGCCTGAAGGGTTGCCGGTGGGTATGGAGAAGGAGTTTAAGGATTCTATGAGAACTGCATTGCTTGTTCGTCAGAGCTTTTTGGATCTTCGTGATAATTTTAGACGTGTTGTTGATCCGCCAATGTGGTCGCCTCACGGTAAAGGTGCGGCTCGACTTGAATCTTTTTTAAATTTTGTAGGGGTCAAAGTTAGGAAGCAAGTTGTTTTAGATGGTCCTGTTAGTTGTGGGAAGAGCATTGCGCTTGCAATGCTTGTTCAGTGGGCTAGAGAAGAAGGTTGGTTGGTTTTGTATGTTCCTAGCGCAAAAGAATGGACTCATGGAGGATTTTTCTATAAGCATCCGCAAACAGAGCTATGGGATACACCTGTCCAGGCTGAGAATGTCCTCAAAGATTTCATGAAGTACAATGAATCCTACTTAAAGGAACTGCCATGCCAAATATTTGATCCAATCCCATTAGGTGAGGGTGCTGGAGTTGGTTGGTTGAAAGATGTTGATTCAATGGCAATTCCTGAAGGTACAATGTTATATGAGCTGGTGAAGACTGGCATTGAACAAACACATGCAGCTGTTGGAGTGGTAGTTCGTTTGAGGAAAGAGTTATCACTTGTTAAAAACATGCCTGTTCTTATTGCAATTGATCAATATAATAACTGGTTTACATTCAGTGAGTATGAGGAGCCTGTTACAATTCGTTCTTGTCGGCCAATACATGCTAAAGAACTTACAATGGTGAAGGCTTTTAGGTCAATGATGCATGATGATATGATGGTAGGGGCTTTCTCTCATTCAACAGCTGTAGGAAAGCTTCGTAAAGACTTACCGGATGTACCGGTAGATGCTCGTGCTATGTTTCCTCGATACAGTTTAGAGGAAGCCGAGACTGTTTGTCATTATTATTTAAGGCAAAGGCTTATTCGCCGTGAAGCATTCACAGAAGATAATTGGAAGAAAATTTACTTTTTATGCAATGGGAATGGAACAGAAATGAGGGGGTTAGTTCCTTTCATGCGATGA
Protein sequence

>MsG0380014924.01.T01

MPEFMRPYIEKFGNVKWDDNCGFRVAAPHMGMDEESHPIVRKEGLDAVLPEGLPVGMEKEFKDSMRTALLVRQSFLDLRDNFRRVVDPPMWSPHGKGAARLESFLNFVGVKVRKQVVLDGPVSCGKSIALAMLVQWAREEGWLVLYVPSAKEWTHGGFFYKHPQTELWDTPVQAENVLKDFMKYNESYLKELPCQIFDPIPLGEGAGVGWLKDVDSMAIPEGTMLYELVKTGIEQTHAAVGVVVRLRKELSLVKNMPVLIAIDQYNNWFTFSEYEEPVTIRSCRPIHAKELTMVKAFRSMMHDDMMVGAFSHSTAVGKLRKDLPDVPVDARAMFPRYSLEEAETVCHYYLRQRLIRREAFTEDNWKKIYFLCNGNGTEMRGLVPFMR*