AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014976.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014976.01.T01 MTR_3g467080 88.806 134 15 0 28 161 28 161 8.03e-85 246
MsG0380014976.01.T01 MTR_4g063790 79.104 134 28 0 28 161 28 161 2.40e-74 220
MsG0380014976.01.T01 MTR_3g465410 78.195 133 29 0 29 161 1 133 1.57e-72 214
MsG0380014976.01.T01 MTR_3g466980 50.000 136 65 2 21 154 19 153 1.53e-41 138
MsG0380014976.01.T01 MTR_3g031100 45.113 133 73 0 28 160 28 160 2.33e-34 120
MsG0380014976.01.T01 MTR_3g065100 46.774 124 65 1 32 155 32 154 2.49e-34 120
MsG0380014976.01.T01 MTR_3g031240 46.154 130 70 0 28 157 28 157 3.24e-32 113
MsG0380014976.01.T01 MTR_2g016210 41.353 133 78 0 28 160 28 160 4.72e-31 112
MsG0380014976.01.T01 MTR_2g035580 47.656 128 66 1 28 155 28 154 5.79e-31 109
MsG0380014976.01.T01 MTR_4g032290 41.538 130 76 0 32 161 32 161 1.00e-28 106
MsG0380014976.01.T01 MTR_5g075380 37.795 127 78 1 28 154 28 153 3.90e-28 102
MsG0380014976.01.T01 MTR_2g035610 49.451 91 46 0 32 122 32 122 9.55e-28 100
MsG0380014976.01.T01 MTR_4g032620 37.008 127 80 0 28 154 28 154 1.53e-27 103
MsG0380014976.01.T01 MTR_4g032260 38.211 123 76 0 34 156 34 156 3.73e-27 100
MsG0380014976.01.T01 MTR_4g031910 40.800 125 74 0 32 156 32 156 7.41e-27 101
MsG0380014976.01.T01 MTR_8g036130 39.552 134 79 1 26 157 26 159 7.60e-26 99.0
MsG0380014976.01.T01 MTR_3g466830 38.889 126 76 1 28 153 27 151 2.05e-23 90.5
MsG0380014976.01.T01 MTR_3g466900 34.127 126 82 1 32 157 2 126 9.47e-20 80.1
MsG0380014976.01.T01 MTR_1g077320 35.433 127 78 3 32 157 32 155 2.54e-19 79.7
MsG0380014976.01.T01 MTR_5g047580 34.848 132 84 2 26 157 26 155 1.04e-18 78.2
MsG0380014976.01.T01 MTR_3g466890 34.884 129 83 1 26 154 25 152 1.60e-18 77.8
MsG0380014976.01.T01 MTR_3g466930 34.959 123 79 1 32 154 2 123 7.77e-18 75.5
MsG0380014976.01.T01 MTR_1g090783 31.818 132 88 2 26 157 25 154 8.73e-18 75.9
MsG0380014976.01.T01 MTR_1g077300 32.308 130 84 2 32 161 32 157 1.14e-17 75.5
MsG0380014976.01.T01 MTR_4g028720 33.333 126 82 2 32 157 32 155 2.01e-17 75.1
MsG0380014976.01.T01 MTR_7g011950 32.540 126 83 2 32 157 32 155 2.10e-17 74.7
MsG0380014976.01.T01 MTR_1g077390 36.296 135 78 4 26 157 26 155 5.51e-17 73.9
MsG0380014976.01.T01 MTR_7g055800 42.857 84 33 1 31 114 18 86 2.22e-16 70.5
MsG0380014976.01.T01 MTR_1g084950 30.709 127 84 3 32 157 32 155 1.09e-15 70.5
MsG0380014976.01.T01 MTR_7g055940 42.105 76 29 1 31 106 18 78 7.25e-14 63.5
MsG0380014976.01.T01 MTR_1g090697 30.000 130 87 3 26 154 26 152 2.02e-13 64.3
MsG0380014976.01.T01 MTR_4g084780 55.556 54 24 0 74 127 1 54 1.58e-12 62.0
MsG0380014976.01.T01 MTR_1g090710 28.358 134 91 3 26 157 26 156 1.61e-12 62.0
MsG0380014976.01.T01 MTR_4g028800 47.917 48 25 0 26 73 24 71 3.23e-12 58.9
MsG0380014976.01.T01 MTR_5g024430 44.118 68 34 1 1 68 27 90 1.41e-11 58.2
MsG0380014976.01.T01 MTR_4g019670 34.409 93 61 0 26 118 29 121 3.29e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014976.01.T01 AT5G48670 44.355 124 68 1 32 155 32 154 8.39e-30 110
MsG0380014976.01.T01 AT5G27810 53.933 89 41 0 29 117 1 89 3.66e-29 103
MsG0380014976.01.T01 AT1G65300 38.971 136 81 2 26 161 25 158 1.38e-23 94.0
MsG0380014976.01.T01 AT1G65330 38.400 125 76 1 26 150 25 148 3.22e-20 84.7
MsG0380014976.01.T01 AT3G05860 38.583 127 73 2 26 150 26 149 1.25e-19 82.0
MsG0380014976.01.T01 AT3G05860 52.703 74 35 0 26 99 26 99 2.22e-19 82.0
MsG0380014976.01.T01 AT3G05860 52.703 74 35 0 26 99 26 99 3.37e-19 81.6
MsG0380014976.01.T01 AT5G26650 34.615 130 84 1 28 157 26 154 9.68e-19 82.0
MsG0380014976.01.T01 AT1G31640 37.313 134 70 4 28 155 27 152 9.31e-17 76.6
MsG0380014976.01.T01 AT5G27960 32.308 130 87 1 28 157 26 154 1.29e-16 75.5
MsG0380014976.01.T01 AT5G26630 30.328 122 84 1 34 155 34 154 9.52e-16 72.0
MsG0380014976.01.T01 AT1G31630 32.143 140 79 5 28 161 27 156 6.39e-14 68.2
MsG0380014976.01.T01 AT1G22590 30.075 133 76 2 28 157 28 146 7.10e-14 65.9
MsG0380014976.01.T01 AT2G28700 30.081 123 85 1 28 150 28 149 2.92e-13 66.2
MsG0380014976.01.T01 AT5G06500 30.833 120 73 3 28 147 28 137 6.32e-11 59.3

Find 36 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGTCATTTCCTGCTTTC+TGG 0.066665 3:-63493110 None:intergenic
ATTCATACCACAGAATTTAA+TGG 0.196701 3:+63493148 MsG0380014976.01.T01:CDS
CAGGTTTGGCCATCAGATTC+AGG 0.224706 3:+63492953 MsG0380014976.01.T01:CDS
TGAGCTATATTGCTCTTTCT+TGG 0.257519 3:-63490070 None:intergenic
CCTGGGCTTGAGGATTGTTT+TGG 0.292217 3:-63492934 None:intergenic
GATGAAATTAGCACTCTTTG+TGG 0.382102 3:+63492884 MsG0380014976.01.T01:CDS
GTTCAGGAGTTTGCCTGGAC+TGG 0.382826 3:+63492997 MsG0380014976.01.T01:CDS
CTGAATCTGATGGCCAAACC+TGG 0.394792 3:-63492952 None:intergenic
GAAGTGTGATATCCAGGTTC+AGG 0.406864 3:+63492981 MsG0380014976.01.T01:CDS
AATGAAATGATGAATGATAT+TGG 0.442815 3:-63493128 None:intergenic
AGGTTTGGCCATCAGATTCA+GGG 0.444978 3:+63492954 MsG0380014976.01.T01:CDS
TCCAGGTTCAGGAGTTTGCC+TGG 0.447666 3:+63492992 MsG0380014976.01.T01:CDS
ACAATCCTCAAGCCCAGGTT+TGG 0.451431 3:+63492939 MsG0380014976.01.T01:CDS
TATTCTTGAGGCAAAGCATT+GGG 0.452810 3:+63493050 MsG0380014976.01.T01:CDS
GGGTTAGAAGTGTGATATCC+AGG 0.506627 3:+63492975 MsG0380014976.01.T01:CDS
AGCAATATAGCTCAATTACA+AGG 0.516760 3:+63490079 MsG0380014976.01.T01:CDS
TCCAGGCAAACTCCTGAACC+TGG 0.517673 3:-63492993 None:intergenic
TATAGCTCAATTACAAGGGT+GGG 0.518606 3:+63490084 MsG0380014976.01.T01:CDS
AAGGAAGGAAACCAGAAAGC+AGG 0.520416 3:+63493099 MsG0380014976.01.T01:CDS
CAAATTCTCAGCAATAAAAG+AGG 0.520681 3:-63493206 None:intergenic
ACTCTTTGTGGAATAGAAGC+TGG 0.543874 3:+63492896 MsG0380014976.01.T01:CDS
TAAATATCCATTAAATTCTG+TGG 0.554522 3:-63493155 None:intergenic
GTATTCTTGAGGCAAAGCAT+TGG 0.555152 3:+63493049 MsG0380014976.01.T01:CDS
GATGGCCAAACCTGGGCTTG+AGG 0.558655 3:-63492944 None:intergenic
ATAGCTCAATTACAAGGGTG+GGG 0.574747 3:+63490085 MsG0380014976.01.T01:CDS
CCAAAACAATCCTCAAGCCC+AGG 0.591446 3:+63492934 MsG0380014976.01.T01:CDS
TGAATCTGATGGCCAAACCT+GGG 0.592740 3:-63492951 None:intergenic
GAGGTCGATCAAAAGATGAA+AGG 0.605953 3:+63493232 MsG0380014976.01.T01:CDS
CTTCTAACCCCTGAATCTGA+TGG 0.608216 3:-63492962 None:intergenic
ATGAGCAGTTGATGAAACAA+AGG 0.608842 3:+63493080 MsG0380014976.01.T01:CDS
GGTTTGGCCATCAGATTCAG+GGG 0.621539 3:+63492955 MsG0380014976.01.T01:CDS
GCAGTTGATGAAACAAAGGA+AGG 0.627441 3:+63493084 MsG0380014976.01.T01:CDS
ATATAGCTCAATTACAAGGG+TGG 0.637290 3:+63490083 MsG0380014976.01.T01:CDS
TATTGCTGAGAATTTGAGGG+AGG 0.639350 3:+63493213 MsG0380014976.01.T01:CDS
GCAATATAGCTCAATTACAA+GGG 0.656124 3:+63490080 MsG0380014976.01.T01:CDS
TGGATCAAGAGGTATTCTTG+AGG 0.709854 3:+63493038 MsG0380014976.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTTGAAAATAATTAATAA+TGG + Chr3:63491340-63491359 MsG0380014976.01.T01:intron 10.0%
!!! ATGGATATATTTTTTTTAAT+AGG + Chr3:63492845-63492864 MsG0380014976.01.T01:intron 10.0%
!!! TAAATTTAGAATTTTACTAT+AGG + Chr3:63492809-63492828 MsG0380014976.01.T01:intron 10.0%
!!! TTATATTTGCTTTAAATAAA+GGG - Chr3:63491602-63491621 None:intergenic 10.0%
!!! TTTATATTTGCTTTAAATAA+AGG - Chr3:63491603-63491622 None:intergenic 10.0%
!!! TTTATTTAAAGCAAATATAA+AGG + Chr3:63491602-63491621 MsG0380014976.01.T01:intron 10.0%
!! AAAAAATATAAGAAAAGATC+AGG + Chr3:63490602-63490621 MsG0380014976.01.T01:intron 15.0%
!! CTCAAATATTATTAAAAAAG+AGG + Chr3:63492003-63492022 MsG0380014976.01.T01:intron 15.0%
!! TATAGGTTATATATTGTTTA+TGG + Chr3:63492826-63492845 MsG0380014976.01.T01:intron 15.0%
!! TGAAAATAATTAATAATGGT+GGG + Chr3:63491344-63491363 MsG0380014976.01.T01:intron 15.0%
!! TTGAAAATAATTAATAATGG+TGG + Chr3:63491343-63491362 MsG0380014976.01.T01:intron 15.0%
!!! ATCTTGAAATTTTTATTTCA+AGG + Chr3:63490871-63490890 MsG0380014976.01.T01:intron 15.0%
!!! ATTGAATTTTATATTAGTAG+CGG + Chr3:63491729-63491748 MsG0380014976.01.T01:intron 15.0%
!!! TCTTTAATATAAATTTTGTC+TGG - Chr3:63492270-63492289 None:intergenic 15.0%
!!! TTAAAAGACATTTATTGTTT+TGG - Chr3:63490254-63490273 None:intergenic 15.0%
!!! TTAATAATATTTGAGTTTGA+CGG - Chr3:63491998-63492017 None:intergenic 15.0%
!!! TTAATTCCAATTTTTGTTAA+TGG - Chr3:63491067-63491086 None:intergenic 15.0%
!!! TTTATACGACATATTTTTTT+TGG - Chr3:63490643-63490662 None:intergenic 15.0%
!! AAAGATAAAGAAAAAGAAAG+CGG + Chr3:63492065-63492084 MsG0380014976.01.T01:intron 20.0%
!! AATGAAATGATGAATGATAT+TGG - Chr3:63493131-63493150 None:intergenic 20.0%
!! ATGTCGTATAAAAATAGTAA+CGG + Chr3:63490651-63490670 MsG0380014976.01.T01:intron 20.0%
!! ATTAGATATAAGAAAAGACT+AGG + Chr3:63490520-63490539 MsG0380014976.01.T01:intron 20.0%
!! GAGAAGAAAAAAAAATCAAT+GGG + Chr3:63490766-63490785 MsG0380014976.01.T01:intron 20.0%
!! TAAATATCCATTAAATTCTG+TGG - Chr3:63493158-63493177 None:intergenic 20.0%
!! TAAGGAAAATAAGTATAACT+TGG + Chr3:63491655-63491674 MsG0380014976.01.T01:intron 20.0%
!! TAAGTGATGTAACAATTATT+TGG + Chr3:63491491-63491510 MsG0380014976.01.T01:intron 20.0%
!! TTAACCAAAATTGGAATTAA+AGG - Chr3:63490158-63490177 None:intergenic 20.0%
!! TTAGATATAAGAAAAGACTA+GGG + Chr3:63490521-63490540 MsG0380014976.01.T01:intron 20.0%
!! TTTAGCGTAAAAAAAGTAAA+GGG + Chr3:63490744-63490763 MsG0380014976.01.T01:intron 20.0%
!!! ATATATTTTTTCGCTAAACT+AGG + Chr3:63491899-63491918 MsG0380014976.01.T01:intron 20.0%
!!! CTTTTTTGTGTATTGTAATT+GGG - Chr3:63491146-63491165 None:intergenic 20.0%
!!! TCTTTTTTGTGTATTGTAAT+TGG - Chr3:63491147-63491166 None:intergenic 20.0%
!!! TTAATTCCAATTTTGGTTAA+TGG + Chr3:63490158-63490177 MsG0380014976.01.T01:intron 20.0%
!!! TTCTTATGCAATTTTTTTCA+AGG + Chr3:63490834-63490853 MsG0380014976.01.T01:intron 20.0%
!!! TTCTTTTTCTTTATCTTTGA+GGG - Chr3:63492063-63492082 None:intergenic 20.0%
!!! TTGAATTTTATATTAGTAGC+GGG + Chr3:63491730-63491749 MsG0380014976.01.T01:intron 20.0%
!!! TTTATTGTTCTGTTATTTTG+TGG + Chr3:63490982-63491001 MsG0380014976.01.T01:intron 20.0%
!!! TTTATTGTTTTGGTATTTTG+TGG - Chr3:63490244-63490263 None:intergenic 20.0%
!!! TTTCTTTTTCTTTATCTTTG+AGG - Chr3:63492064-63492083 None:intergenic 20.0%
!!! TTTTAGCGTAAAAAAAGTAA+AGG + Chr3:63490743-63490762 MsG0380014976.01.T01:intron 20.0%
!!! TTTTTTGTGTATTGTAATTG+GGG - Chr3:63491145-63491164 None:intergenic 20.0%
! AAGAAATGAAGAGACTAATA+TGG - Chr3:63491293-63491312 None:intergenic 25.0%
! ACAACAAAAACTAATTACGT+TGG + Chr3:63490417-63490436 MsG0380014976.01.T01:intron 25.0%
! ACATTGTCCATTTATTTAAG+GGG + Chr3:63491406-63491425 MsG0380014976.01.T01:intron 25.0%
! AGGAAAAATATATACAAGAG+AGG + Chr3:63492023-63492042 MsG0380014976.01.T01:intron 25.0%
! ATGGCTTAGATTAATTGATA+TGG - Chr3:63490196-63490177 None:intergenic 25.0%
! ATTCATACCACAGAATTTAA+TGG + Chr3:63493148-63493167 MsG0380014976.01.T01:CDS 25.0%
! CAAGACAAAATTTCTATTCA+TGG + Chr3:63491537-63491556 MsG0380014976.01.T01:intron 25.0%
! CGTGAATAAAAAAAAAGCAA+TGG + Chr3:63490930-63490949 MsG0380014976.01.T01:intron 25.0%
! CTTAGATTAATTGATATGGT+AGG - Chr3:63491044-63491063 None:intergenic 25.0%
! GAAAAATATATACAAGAGAG+GGG + Chr3:63492025-63492044 MsG0380014976.01.T01:intron 25.0%
! GACATTGTCCATTTATTTAA+GGG + Chr3:63491405-63491424 MsG0380014976.01.T01:intron 25.0%
! GGAAAAATATATACAAGAGA+GGG + Chr3:63492024-63492043 MsG0380014976.01.T01:intron 25.0%
! GGAGAAGAAAAAAAAATCAA+TGG + Chr3:63490765-63490784 MsG0380014976.01.T01:intron 25.0%
! TAACATTCCCCTTAAATAAA+TGG - Chr3:63491416-63491435 None:intergenic 25.0%
! TAAGATATTACACTTACTCT+TGG + Chr3:63491103-63491122 MsG0380014976.01.T01:intron 25.0%
! TAAGATATTACACTTACTCT+TGG - Chr3:63491122-63491103 None:intergenic 25.0%
! TCTAAGCCATTAACAAAAAT+TGG + Chr3:63491058-63491077 MsG0380014976.01.T01:intron 25.0%
! TGACATTGTCCATTTATTTA+AGG + Chr3:63491404-63491423 MsG0380014976.01.T01:intron 25.0%
! TGGAATTAAATGTCAAGATT+TGG + Chr3:63491078-63491097 MsG0380014976.01.T01:intron 25.0%
! TGTCGTATAAAAATAGTAAC+GGG + Chr3:63490652-63490671 MsG0380014976.01.T01:intron 25.0%
!! ATTTTTGTACTAATCTGTCA+CGG - Chr3:63490572-63490591 None:intergenic 25.0%
!! CACGCTAAAAGAATTTTTAA+GGG - Chr3:63490914-63490933 None:intergenic 25.0%
!! CATGAATAGAAATTTTGTCT+TGG - Chr3:63491539-63491558 None:intergenic 25.0%
!! GTGTCATCTTTTAAATTGTT+TGG - Chr3:63491200-63491219 None:intergenic 25.0%
!! TCACGCTAAAAGAATTTTTA+AGG - Chr3:63490915-63490934 None:intergenic 25.0%
!! TTGACCTTTAATTCCAATTT+TGG + Chr3:63490151-63490170 MsG0380014976.01.T01:intron 25.0%
!! TTTCACGCTAAAAGAATTTT+TGG + Chr3:63490315-63490334 MsG0380014976.01.T01:intron 25.0%
!! TTTTATTGCTGAGAATTTGA+GGG + Chr3:63493210-63493229 MsG0380014976.01.T01:CDS 25.0%
!!! GTAATTAGTTTTTGTTGTCA+TGG - Chr3:63490415-63490434 None:intergenic 25.0%
!!! GTGTTGACTATAATAGAAAA+TGG - Chr3:63490215-63490234 None:intergenic 25.0%
AATGTTAAATAGTGCCCATA+TGG + Chr3:63491429-63491448 MsG0380014976.01.T01:intron 30.0%
ACATTCAGAAAGAGGAAAAA+TGG + Chr3:63492652-63492671 MsG0380014976.01.T01:intron 30.0%
ACTGGAACAAAGTAAAAAGA+TGG + Chr3:63493015-63493034 MsG0380014976.01.T01:CDS 30.0%
AGACTAATATGGTAAAATCG+TGG - Chr3:63491282-63491301 None:intergenic 30.0%
AGCAATATAGCTCAATTACA+AGG + Chr3:63490079-63490098 MsG0380014976.01.T01:CDS 30.0%
CAAATTCTCAGCAATAAAAG+AGG - Chr3:63493209-63493228 None:intergenic 30.0%
CACCTTAAAGATGAATTTGT+AGG + Chr3:63491785-63491804 MsG0380014976.01.T01:intron 30.0%
GCAATATAGCTCAATTACAA+GGG + Chr3:63490080-63490099 MsG0380014976.01.T01:CDS 30.0%
TAAGTATAACTTGGAGTTCA+AGG + Chr3:63491664-63491683 MsG0380014976.01.T01:intron 30.0%
TATGTATGATATGCAAAGAG+AGG - Chr3:63492688-63492707 None:intergenic 30.0%
TCTAAGCCATTAACCAAAAT+TGG - Chr3:63490167-63490186 None:intergenic 30.0%
TGCCTACAAATTCATCTTTA+AGG - Chr3:63491790-63491809 None:intergenic 30.0%
TGGAATTAAAGGTCAAGATT+TGG - Chr3:63490147-63490166 None:intergenic 30.0%
! AGTGCTACTACAATAGAAAA+TGG + Chr3:63491010-63491029 MsG0380014976.01.T01:intron 30.0%
! CGATACAAAAAGTATGTAGT+GGG - Chr3:63491371-63491390 None:intergenic 30.0%
! CTTTTAAATTGTTTGGACGT+TGG - Chr3:63491193-63491212 None:intergenic 30.0%
! CTTTTATTGCTGAGAATTTG+AGG + Chr3:63493209-63493228 MsG0380014976.01.T01:CDS 30.0%
! TCGATACAAAAAGTATGTAG+TGG - Chr3:63491372-63491391 None:intergenic 30.0%
!! AAATAAAGGGTCTTGTTAAC+CGG - Chr3:63491589-63491608 None:intergenic 30.0%
!! ATCTTTAAGGTGAATAAGTG+GGG - Chr3:63491777-63491796 None:intergenic 30.0%
!! CATCTTTAAGGTGAATAAGT+GGG - Chr3:63491778-63491797 None:intergenic 30.0%
!! TCATCTTTAAGGTGAATAAG+TGG - Chr3:63491779-63491798 None:intergenic 30.0%
!! TTCTTTATCTTTGAGGGTTT+TGG - Chr3:63492057-63492076 None:intergenic 30.0%
!!! ACTCATTTTGCTATTGTCTT+CGG + Chr3:63491631-63491650 MsG0380014976.01.T01:intron 30.0%
ACGGATAAAAAAGACGATAG+AGG - Chr3:63490553-63490572 None:intergenic 35.0%
ATATAGCTCAATTACAAGGG+TGG + Chr3:63490083-63490102 MsG0380014976.01.T01:CDS 35.0%
ATGCTTAACCAATGACCATA+TGG - Chr3:63491447-63491466 None:intergenic 35.0%
ATTCCTTAACCAATGCACTA+GGG + Chr3:63491560-63491579 MsG0380014976.01.T01:intron 35.0%
GATGAAATTAGCACTCTTTG+TGG + Chr3:63492884-63492903 MsG0380014976.01.T01:CDS 35.0%
GGAACAAAGTAAAAAGATGG+TGG + Chr3:63493018-63493037 MsG0380014976.01.T01:CDS 35.0%
TAAATTGTTTGGACGTTGGT+TGG - Chr3:63491189-63491208 None:intergenic 35.0%
TATAGCTCAATTACAAGGGT+GGG + Chr3:63490084-63490103 MsG0380014976.01.T01:CDS 35.0%
TGAGCTATATTGCTCTTTCT+TGG - Chr3:63490073-63490092 None:intergenic 35.0%
TGCTTAACCAATGACCATAT+GGG - Chr3:63491446-63491465 None:intergenic 35.0%
TTGTGTATTGTAATTGGGGT+GGG - Chr3:63491141-63491160 None:intergenic 35.0%
TTTGTGTATTGTAATTGGGG+TGG - Chr3:63491142-63491161 None:intergenic 35.0%
! TATTCTTGAGGCAAAGCATT+GGG + Chr3:63493050-63493069 MsG0380014976.01.T01:CDS 35.0%
! TTATATTAGTAGCGGGATAG+AGG + Chr3:63491737-63491756 MsG0380014976.01.T01:intron 35.0%
! TTTTCTGATCCTCACTATCA+TGG + Chr3:63492576-63492595 MsG0380014976.01.T01:intron 35.0%
! TTTTTACTTTGTTCCAGTCC+AGG - Chr3:63493013-63493032 None:intergenic 35.0%
!! ATGAGCAGTTGATGAAACAA+AGG + Chr3:63493080-63493099 MsG0380014976.01.T01:CDS 35.0%
!! TAAAAAGATGGTGGATCAAG+AGG + Chr3:63493027-63493046 MsG0380014976.01.T01:CDS 35.0%
!! TTTGCTATTGTCTTCGGATA+AGG + Chr3:63491637-63491656 MsG0380014976.01.T01:intron 35.0%
AATAGTGCCCATATGGTCAT+TGG + Chr3:63491436-63491455 MsG0380014976.01.T01:intron 40.0%
ACATAACATGTGACTCGAAG+AGG + Chr3:63492623-63492642 MsG0380014976.01.T01:intron 40.0%
ACTCTTTGTGGAATAGAAGC+TGG + Chr3:63492896-63492915 MsG0380014976.01.T01:CDS 40.0%
AGTTTGACGGAGTATGATAG+GGG - Chr3:63491985-63492004 None:intergenic 40.0%
ATAGCTCAATTACAAGGGTG+GGG + Chr3:63490085-63490104 MsG0380014976.01.T01:CDS 40.0%
ATTGGTCATTTCCTGCTTTC+TGG - Chr3:63493113-63493132 None:intergenic 40.0%
GAGGTCGATCAAAAGATGAA+AGG + Chr3:63493232-63493251 MsG0380014976.01.T01:CDS 40.0%
GAGTTTGACGGAGTATGATA+GGG - Chr3:63491986-63492005 None:intergenic 40.0%
GATTCCTTAACCAATGCACT+AGG + Chr3:63491559-63491578 MsG0380014976.01.T01:intron 40.0%
GCTAAACTAGGAGAAATGAC+AGG + Chr3:63491911-63491930 MsG0380014976.01.T01:intron 40.0%
GTATTCTTGAGGCAAAGCAT+TGG + Chr3:63493049-63493068 MsG0380014976.01.T01:CDS 40.0%
GTCTATATAAGCAGCACAAC+AGG + Chr3:63492505-63492524 MsG0380014976.01.T01:intron 40.0%
GTCTCTTCATTTCTTCCACT+TGG + Chr3:63491298-63491317 MsG0380014976.01.T01:intron 40.0%
TATTGCTGAGAATTTGAGGG+AGG + Chr3:63493213-63493232 MsG0380014976.01.T01:CDS 40.0%
TGAGTTTGACGGAGTATGAT+AGG - Chr3:63491987-63492006 None:intergenic 40.0%
TGTGTATTGTAATTGGGGTG+GGG - Chr3:63491140-63491159 None:intergenic 40.0%
!! GCAGTTGATGAAACAAAGGA+AGG + Chr3:63493084-63493103 MsG0380014976.01.T01:CDS 40.0%
!! TGGATCAAGAGGTATTCTTG+AGG + Chr3:63493038-63493057 MsG0380014976.01.T01:CDS 40.0%
AAGGAAGGAAACCAGAAAGC+AGG + Chr3:63493099-63493118 MsG0380014976.01.T01:CDS 45.0%
AGGAGAAATGACAGGCATCA+AGG + Chr3:63491919-63491938 MsG0380014976.01.T01:intron 45.0%
AGGTTTGGCCATCAGATTCA+GGG + Chr3:63492954-63492973 MsG0380014976.01.T01:CDS 45.0%
AGTATGATAGGGGTTCATCG+GGG - Chr3:63491975-63491994 None:intergenic 45.0%
ATCCTCACTATCATGGCTAG+AGG + Chr3:63492583-63492602 MsG0380014976.01.T01:intron 45.0%
CTTCTAACCCCTGAATCTGA+TGG - Chr3:63492965-63492984 None:intergenic 45.0%
GAAACAACGACATCCCAACT+AGG + Chr3:63491943-63491962 MsG0380014976.01.T01:intron 45.0%
GAAGTGTGATATCCAGGTTC+AGG + Chr3:63492981-63493000 MsG0380014976.01.T01:CDS 45.0%
GAGAAATGACAGGCATCAAG+GGG + Chr3:63491921-63491940 MsG0380014976.01.T01:intron 45.0%
GAGTATGATAGGGGTTCATC+GGG - Chr3:63491976-63491995 None:intergenic 45.0%
GGAGAAATGACAGGCATCAA+GGG + Chr3:63491920-63491939 MsG0380014976.01.T01:intron 45.0%
GGAGGATGACATTCAGAAAG+AGG + Chr3:63492644-63492663 MsG0380014976.01.T01:intron 45.0%
GGAGTATGATAGGGGTTCAT+CGG - Chr3:63491977-63491996 None:intergenic 45.0%
TAACATGTGACTCGAAGAGG+AGG + Chr3:63492626-63492645 MsG0380014976.01.T01:intron 45.0%
TCCTCACTATCATGGCTAGA+GGG + Chr3:63492584-63492603 MsG0380014976.01.T01:intron 45.0%
TGAATCTGATGGCCAAACCT+GGG - Chr3:63492954-63492973 None:intergenic 45.0%
TGTGTCTCTATCTCTCCAAG+TGG - Chr3:63491316-63491335 None:intergenic 45.0%
! GGGTTAGAAGTGTGATATCC+AGG + Chr3:63492975-63492994 MsG0380014976.01.T01:CDS 45.0%
!! TGTCCCTAGTGCATTGGTTA+AGG - Chr3:63491566-63491585 None:intergenic 45.0%
AACCAATGCACTAGGGACAC+CGG + Chr3:63491567-63491586 MsG0380014976.01.T01:intron 50.0%
ACAATCCTCAAGCCCAGGTT+TGG + Chr3:63492939-63492958 MsG0380014976.01.T01:CDS 50.0%
CACTATCATGGCTAGAGGGA+AGG + Chr3:63492588-63492607 MsG0380014976.01.T01:intron 50.0%
CAGGTTTGGCCATCAGATTC+AGG + Chr3:63492953-63492972 MsG0380014976.01.T01:CDS 50.0%
CCAAAACAATCCTCAAGCCC+AGG + Chr3:63492934-63492953 MsG0380014976.01.T01:CDS 50.0%
CTGAATCTGATGGCCAAACC+TGG - Chr3:63492955-63492974 None:intergenic 50.0%
GGTTTGGCCATCAGATTCAG+GGG + Chr3:63492955-63492974 MsG0380014976.01.T01:CDS 50.0%
! CCTGGGCTTGAGGATTGTTT+TGG - Chr3:63492937-63492956 None:intergenic 50.0%
! TCCCTCTAGCCATGATAGTG+AGG - Chr3:63492588-63492607 None:intergenic 50.0%
AACCGGTGTCCCTAGTGCAT+TGG - Chr3:63491572-63491591 None:intergenic 55.0%
GTTCAGGAGTTTGCCTGGAC+TGG + Chr3:63492997-63493016 MsG0380014976.01.T01:CDS 55.0%
TCCAGGCAAACTCCTGAACC+TGG - Chr3:63492996-63493015 None:intergenic 55.0%
TCCAGGTTCAGGAGTTTGCC+TGG + Chr3:63492992-63493011 MsG0380014976.01.T01:CDS 55.0%
! ATCGGGGTGTCAGCCTAGTT+GGG - Chr3:63491959-63491978 None:intergenic 55.0%
GATGGCCAAACCTGGGCTTG+AGG - Chr3:63492947-63492966 None:intergenic 60.0%
! CATCGGGGTGTCAGCCTAGT+TGG - Chr3:63491960-63491979 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 63490046 63493273 63490046 ID=MsG0380014976.01;Name=MsG0380014976.01
Chr3 mRNA 63490046 63493273 63490046 ID=MsG0380014976.01.T01;Parent=MsG0380014976.01;Name=MsG0380014976.01.T01;_AED=0.22;_eAED=0.22;_QI=0|0|0|0.5|1|1|2|0|161
Chr3 exon 63490046 63490124 63490046 ID=MsG0380014976.01.T01:exon:6663;Parent=MsG0380014976.01.T01
Chr3 exon 63492867 63493273 63492867 ID=MsG0380014976.01.T01:exon:6664;Parent=MsG0380014976.01.T01
Chr3 CDS 63490046 63490124 63490046 ID=MsG0380014976.01.T01:cds;Parent=MsG0380014976.01.T01
Chr3 CDS 63492867 63493273 63492867 ID=MsG0380014976.01.T01:cds;Parent=MsG0380014976.01.T01
Gene Sequence

>MsG0380014976.01.T01

ATGCTCATCTCAGCACAAGATGTGCCAAGAAAGAGCAATATAGCTCAATTACAAGGGTGGGGATATTTTGACTCCAAGAGAATTATGAAGAAGATTGATGAAATTAGCACTCTTTGTGGAATAGAAGCTGGTGCAATAATTTACGACCAAAACAATCCTCAAGCCCAGGTTTGGCCATCAGATTCAGGGGTTAGAAGTGTGATATCCAGGTTCAGGAGTTTGCCTGGACTGGAACAAAGTAAAAAGATGGTGGATCAAGAGGTATTCTTGAGGCAAAGCATTGGGAAAGTCTATGAGCAGTTGATGAAACAAAGGAAGGAAACCAGAAAGCAGGAAATGACCAATATCATTCATCATTTCATTCATACCACAGAATTTAATGGATATTTAATGAGCAAACATGATCTTAATGATTTGTCCTCTTTTATTGCTGAGAATTTGAGGGAGGTCGATCAAAAGATGAAAGGAATGCTAATCGAAGATTGA
Protein sequence

>MsG0380014976.01.T01

MLISAQDVPRKSNIAQLQGWGYFDSKRIMKKIDEISTLCGIEAGAIIYDQNNPQAQVWPSDSGVRSVISRFRSLPGLEQSKKMVDQEVFLRQSIGKVYEQLMKQRKETRKQEMTNIIHHFIHTTEFNGYLMSKHDLNDLSSFIAENLREVDQKMKGMLIED*