AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580026631.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026631.01.T01 MTR_0143s0050 73.222 478 93 1 1 443 1 478 0.0 716
MsG0580026631.01.T01 MTR_3g026875 72.803 478 95 1 1 443 1 478 0.0 714
MsG0580026631.01.T01 MTR_6g065615 72.803 478 95 1 1 443 1 478 0.0 714
MsG0580026631.01.T01 MTR_0029s0020 73.013 478 94 1 1 443 1 478 0.0 713
MsG0580026631.01.T01 MTR_4g044687 74.477 478 87 1 1 443 1 478 0.0 712
MsG0580026631.01.T01 MTR_8g442840 72.594 478 96 1 1 443 1 478 0.0 712
MsG0580026631.01.T01 MTR_3g457840 72.176 478 96 2 1 443 1 476 0.0 711
MsG0580026631.01.T01 MTR_0089s0130 72.385 478 97 1 1 443 1 478 0.0 709
MsG0580026631.01.T01 MTR_6g014055 72.176 478 96 2 1 443 1 476 0.0 708
MsG0580026631.01.T01 MTR_6g072867 72.385 478 97 1 1 443 1 478 0.0 708
MsG0580026631.01.T01 MTR_5g060015 73.319 476 92 1 3 443 26 501 0.0 707
MsG0580026631.01.T01 MTR_5g470710 71.757 478 98 2 1 443 1 476 0.0 707
MsG0580026631.01.T01 MTR_6g057540 75.771 454 96 2 1 443 24 474 0.0 706
MsG0580026631.01.T01 MTR_0089s0070 72.594 478 96 1 1 443 1 478 0.0 705
MsG0580026631.01.T01 MTR_0089s0050 73.448 467 89 1 1 432 108 574 0.0 705
MsG0580026631.01.T01 MTR_0143s0020 71.757 478 98 2 1 443 1 476 0.0 705
MsG0580026631.01.T01 MTR_3g026088 71.548 478 99 2 1 443 1 476 0.0 703
MsG0580026631.01.T01 MTR_0038s0010 71.757 478 98 2 1 443 1 476 0.0 702
MsG0580026631.01.T01 MTR_0350s0030 71.757 478 98 2 1 443 1 476 0.0 701
MsG0580026631.01.T01 MTR_7g081465 71.548 478 99 2 1 443 1 476 0.0 701
MsG0580026631.01.T01 MTR_2g435990 71.339 478 100 2 1 443 1 476 0.0 701
MsG0580026631.01.T01 MTR_7g046515 73.753 461 86 1 1 426 1 461 0.0 699
MsG0580026631.01.T01 MTR_7g071103 71.757 478 98 2 1 443 1 476 0.0 698
MsG0580026631.01.T01 MTR_6g074695 71.339 478 100 2 1 443 1 476 0.0 698
MsG0580026631.01.T01 MTR_4g016445 71.339 478 100 2 1 443 1 476 0.0 698
MsG0580026631.01.T01 MTR_5g071147 71.130 478 101 2 1 443 1 476 0.0 697
MsG0580026631.01.T01 MTR_2g038655 71.130 478 101 2 1 443 1 476 0.0 697
MsG0580026631.01.T01 MTR_5g423980 71.548 478 99 2 1 443 1 476 0.0 697
MsG0580026631.01.T01 MTR_3g049113 70.711 478 103 2 1 443 1 476 0.0 697
MsG0580026631.01.T01 MTR_4g039657 71.548 478 99 2 1 443 1 476 0.0 696
MsG0580026631.01.T01 MTR_8g047030 70.711 478 103 2 1 443 1 476 0.0 696
MsG0580026631.01.T01 MTR_4g465410 71.339 478 100 2 1 443 1 476 0.0 694
MsG0580026631.01.T01 MTR_3g451310 70.921 478 102 2 1 443 1 476 0.0 691
MsG0580026631.01.T01 MTR_6g046375 70.921 478 102 2 1 443 1 476 0.0 691
MsG0580026631.01.T01 MTR_0237s0060 70.502 478 104 2 1 443 1 476 0.0 691
MsG0580026631.01.T01 MTR_2g090930 71.757 478 98 2 1 443 1 476 0.0 690
MsG0580026631.01.T01 MTR_5g078975 70.502 478 104 2 1 443 1 476 0.0 689
MsG0580026631.01.T01 MTR_8g009322 71.339 478 92 2 1 443 1 468 0.0 686
MsG0580026631.01.T01 MTR_4g043765 73.465 456 86 1 1 421 1 456 0.0 684
MsG0580026631.01.T01 MTR_5g015985 71.548 478 99 2 1 443 1 476 0.0 681
MsG0580026631.01.T01 MTR_5g059485 70.921 478 102 2 1 443 1 476 0.0 677
MsG0580026631.01.T01 MTR_0336s0030 70.921 478 102 2 1 443 1 476 0.0 676
MsG0580026631.01.T01 MTR_5g095335 71.460 452 94 1 1 417 1 452 0.0 669
MsG0580026631.01.T01 MTR_3g026893 71.339 478 91 2 1 443 1 467 0.0 668
MsG0580026631.01.T01 MTR_7g071873 69.038 478 98 3 1 443 1 463 0.0 665
MsG0580026631.01.T01 MTR_4g044730 68.067 476 91 2 3 443 38 487 0.0 643
MsG0580026631.01.T01 MTR_0124s0070 78.663 389 83 0 55 443 34 422 0.0 642
MsG0580026631.01.T01 MTR_1g051570 69.414 461 81 3 1 426 1 436 0.0 634
MsG0580026631.01.T01 MTR_7g010875 66.109 478 99 3 1 443 1 450 0.0 627
MsG0580026631.01.T01 MTR_0109s0050 66.736 478 98 2 1 443 1 452 0.0 627
MsG0580026631.01.T01 MTR_6g072855 67.782 478 101 4 1 443 12 471 0.0 623
MsG0580026631.01.T01 MTR_4g040010 70.022 447 110 4 1 443 25 451 0.0 617
MsG0580026631.01.T01 MTR_6g466430 65.063 478 109 3 1 443 1 455 0.0 615
MsG0580026631.01.T01 MTR_6g463770 67.946 443 113 4 1 443 1 414 0.0 587
MsG0580026631.01.T01 MTR_2g065338 70.677 399 82 1 1 364 1 399 0.0 573
MsG0580026631.01.T01 MTR_7g070985 78.964 309 63 1 135 443 1 307 0.0 520
MsG0580026631.01.T01 MTR_8g051925 67.204 372 67 2 72 443 13 329 3.04e-179 504
MsG0580026631.01.T01 MTR_8g052425 63.265 343 90 2 1 308 1 342 1.50e-149 429
MsG0580026631.01.T01 MTR_5g041255 67.241 290 58 2 1 255 1 288 5.21e-132 390
MsG0580026631.01.T01 MTR_3g047715 43.243 444 214 5 4 410 8 450 3.16e-117 351
MsG0580026631.01.T01 MTR_2g082450 40.611 458 232 4 5 422 9 466 1.32e-115 347
MsG0580026631.01.T01 MTR_2g049380 42.438 443 217 3 3 408 7 448 4.97e-114 343
MsG0580026631.01.T01 MTR_6g074500 40.611 458 232 4 5 422 9 466 1.89e-113 342
MsG0580026631.01.T01 MTR_3g013580 41.704 446 215 5 4 408 6 447 4.77e-113 340
MsG0580026631.01.T01 MTR_0047s0160 40.618 453 218 5 1 408 1 447 2.64e-112 338
MsG0580026631.01.T01 MTR_5g005270 40.397 453 219 5 1 408 1 447 9.28e-112 337
MsG0580026631.01.T01 MTR_8g038320 40.177 453 220 5 1 408 1 447 1.41e-111 337
MsG0580026631.01.T01 MTR_5g011880 40.397 453 219 5 1 408 1 447 1.49e-111 337
MsG0580026631.01.T01 MTR_3g022320 40.177 453 220 5 1 408 1 447 3.25e-111 336
MsG0580026631.01.T01 MTR_0159s0050 66.270 252 50 1 1 217 1 252 3.81e-111 328
MsG0580026631.01.T01 MTR_7g010390 40.177 453 220 5 1 408 1 447 4.80e-111 335
MsG0580026631.01.T01 MTR_3g018710 40.618 453 218 5 1 408 1 447 5.89e-111 335
MsG0580026631.01.T01 MTR_3g060990 39.956 453 221 5 1 408 1 447 8.99e-111 335
MsG0580026631.01.T01 MTR_3g058020 40.177 453 220 5 1 408 1 447 1.20e-110 334
MsG0580026631.01.T01 MTR_4g054440 40.618 453 218 5 1 408 1 447 2.13e-110 333
MsG0580026631.01.T01 MTR_3g034870 39.956 453 221 5 1 408 1 447 2.16e-110 333
MsG0580026631.01.T01 MTR_1g053435 39.956 453 221 5 1 408 1 447 2.28e-110 333
MsG0580026631.01.T01 MTR_5g046540 40.265 452 230 4 5 416 9 460 2.62e-110 333
MsG0580026631.01.T01 MTR_3g015377 39.821 447 230 3 1 408 1 447 1.70e-109 331
MsG0580026631.01.T01 MTR_3g046447 70.485 227 42 1 217 443 16 217 3.82e-109 321
MsG0580026631.01.T01 MTR_4g031710 40.177 453 219 6 1 408 1 446 1.69e-108 329
MsG0580026631.01.T01 MTR_3g051650 40.402 448 224 5 4 410 6 451 2.17e-107 326
MsG0580026631.01.T01 MTR_3g091160 40.402 448 224 5 4 410 6 451 2.81e-107 326
MsG0580026631.01.T01 MTR_7g006680 39.955 448 226 5 4 410 6 451 1.26e-106 324
MsG0580026631.01.T01 MTR_7g046110 40.265 452 220 6 4 414 6 448 3.20e-106 323
MsG0580026631.01.T01 MTR_5g080530 40.044 452 221 6 4 414 6 448 1.06e-105 322
MsG0580026631.01.T01 MTR_0046s0100 39.035 456 238 4 5 421 38 492 1.15e-105 322
MsG0580026631.01.T01 MTR_0014s0420 42.308 442 217 5 4 408 8 448 7.86e-105 319
MsG0580026631.01.T01 MTR_6g445330 78.191 188 41 0 255 442 1 188 3.24e-103 305
MsG0580026631.01.T01 MTR_0866s0010 40.995 422 211 3 24 408 2 422 1.03e-102 319
MsG0580026631.01.T01 MTR_4g009470 39.644 449 228 5 3 410 7 453 2.18e-102 313
MsG0580026631.01.T01 MTR_7g077015 39.149 470 225 8 3 422 7 465 2.26e-102 313
MsG0580026631.01.T01 MTR_5g028560 39.640 444 229 3 4 408 6 449 1.73e-101 311
MsG0580026631.01.T01 MTR_7g079940 39.189 444 231 3 4 408 6 449 1.43e-100 308
MsG0580026631.01.T01 MTR_7g028120 39.640 444 229 3 4 408 6 449 2.18e-100 308
MsG0580026631.01.T01 MTR_3g046487 67.249 229 61 2 1 219 1 225 3.55e-100 299
MsG0580026631.01.T01 MTR_0029s0060 39.238 446 232 3 4 410 6 451 9.05e-100 306
MsG0580026631.01.T01 MTR_1g018990 39.189 444 231 3 4 408 6 449 2.29e-99 305
MsG0580026631.01.T01 MTR_3g082580 39.189 444 231 3 4 408 6 449 2.39e-99 305
MsG0580026631.01.T01 MTR_5g036210 39.414 444 230 4 4 408 6 449 3.52e-99 305
MsG0580026631.01.T01 MTR_6g027000 39.189 444 231 3 4 408 6 449 3.63e-99 305
MsG0580026631.01.T01 MTR_3g100770 39.414 444 230 4 4 408 6 449 4.56e-99 305
MsG0580026631.01.T01 MTR_5g040810 38.964 444 232 3 4 408 6 449 7.89e-99 304
MsG0580026631.01.T01 MTR_5g015640 38.739 444 233 3 4 408 6 449 3.53e-97 300
MsG0580026631.01.T01 MTR_5g074255 38.964 444 232 3 4 408 6 449 3.57e-97 300
MsG0580026631.01.T01 MTR_6g471550 38.841 466 236 6 3 423 7 468 1.30e-96 298
MsG0580026631.01.T01 MTR_5g084310 39.414 444 230 3 4 408 6 449 6.40e-95 294
MsG0580026631.01.T01 MTR_5g085650 39.414 444 230 3 4 408 6 449 6.40e-95 294
MsG0580026631.01.T01 MTR_0632s0030 46.580 307 162 1 112 416 7 313 7.07e-94 286
MsG0580026631.01.T01 MTR_8g054530 37.118 458 222 6 5 422 9 440 7.10e-94 290
MsG0580026631.01.T01 MTR_3g023410 38.753 449 228 5 3 408 7 451 1.25e-92 288
MsG0580026631.01.T01 MTR_6g061790 38.753 449 226 6 4 408 8 451 4.45e-92 286
MsG0580026631.01.T01 MTR_3g067475 42.560 336 162 3 55 386 21 329 9.27e-92 281
MsG0580026631.01.T01 MTR_5g086900 40.476 420 213 5 4 408 8 405 3.18e-91 283
MsG0580026631.01.T01 MTR_3g047220 43.407 364 171 8 3 336 7 365 8.32e-91 282
MsG0580026631.01.T01 MTR_3g452070 39.889 361 180 2 3 326 7 367 5.44e-87 270
MsG0580026631.01.T01 MTR_7g045955 34.475 467 216 5 1 424 1 420 3.18e-85 268
MsG0580026631.01.T01 MTR_1g036610 41.848 368 167 5 3 327 7 370 2.71e-83 263
MsG0580026631.01.T01 MTR_3g067340 34.910 444 199 5 4 408 48 440 1.31e-82 262
MsG0580026631.01.T01 MTR_3g020590 36.486 444 221 5 4 408 6 427 1.48e-82 261
MsG0580026631.01.T01 MTR_3g451910 42.857 343 156 4 3 307 24 364 3.37e-82 260
MsG0580026631.01.T01 MTR_8g470910 44.300 307 140 2 112 416 7 284 5.18e-80 249
MsG0580026631.01.T01 MTR_7g035370 32.272 471 235 6 4 436 49 473 2.70e-74 241
MsG0580026631.01.T01 MTR_4g049270 34.228 447 201 11 4 410 8 401 2.42e-67 223
MsG0580026631.01.T01 MTR_3g448820 62.209 172 30 1 1 137 1 172 8.06e-61 196
MsG0580026631.01.T01 MTR_0418s0010 58.960 173 36 1 1 138 1 173 1.41e-57 187
MsG0580026631.01.T01 MTR_6g464470 49.130 230 66 4 1 183 1 226 1.04e-51 180
MsG0580026631.01.T01 MTR_0260s0010 57.542 179 41 1 1 144 1 179 3.48e-51 185
MsG0580026631.01.T01 MTR_0782s0010 33.942 274 139 3 135 408 1 232 4.24e-48 166
MsG0580026631.01.T01 MTR_8g466900 37.975 237 91 4 47 277 43 229 1.16e-43 154
MsG0580026631.01.T01 MTR_0094s0100 33.971 209 119 1 202 410 1 190 1.94e-36 133
MsG0580026631.01.T01 MTR_3g053450 42.208 154 77 2 111 259 3 149 1.64e-32 121
MsG0580026631.01.T01 MTR_0048s0010 26.353 425 176 9 24 408 2 329 3.22e-29 117
MsG0580026631.01.T01 MTR_6g072130 26.301 365 186 11 30 323 41 393 4.52e-29 119
MsG0580026631.01.T01 MTR_5g081070 30.000 260 151 6 75 323 102 341 4.53e-27 111
MsG0580026631.01.T01 MTR_6g084020 30.303 264 133 9 64 301 91 329 2.02e-22 98.2
MsG0580026631.01.T01 MTR_6g034655 79.245 53 11 0 1 53 1 53 2.64e-19 84.7
MsG0580026631.01.T01 MTR_6g073790 77.358 53 12 0 1 53 9 61 5.00e-19 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 147 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTAACGTACCTCTTCT+TGG 0.283709 5:+41062151 MsG0580026631.01.T01:CDS
AGCCTTAGTGACAAGATTCT+TGG 0.309806 5:-41061711 None:intergenic
ATTCTTGCACTACTCATCTA+TGG 0.311397 5:+41061812 MsG0580026631.01.T01:CDS
CACCTCTTTCTTCCGAAGCT+TGG 0.317158 5:-41062329 None:intergenic
CAAGTTCAAGGAAGTGGATT+TGG 0.318676 5:+41061386 MsG0580026631.01.T01:CDS
TTTGGCTAGTTTGAGAGATT+TGG 0.322814 5:+41061404 MsG0580026631.01.T01:CDS
GTGAGCCAAACTACTTCATT+AGG 0.340020 5:-41062085 None:intergenic
CAAAGTAGGAACCGGATTCT+TGG 0.344993 5:-41061897 None:intergenic
GTTGTGTACCTCTCCTCTAT+AGG 0.346783 5:+41061981 MsG0580026631.01.T01:CDS
TCCATGATAATCCAGAGAAT+TGG 0.351206 5:+41062032 MsG0580026631.01.T01:CDS
TTGGTTTCCGACACCGTTAT+GGG 0.351388 5:+41061448 MsG0580026631.01.T01:CDS
TCCACGAAGTCATCAAGATT+TGG 0.368220 5:-41061848 None:intergenic
TTTGACATTAAAGAAAGAAT+TGG 0.368590 5:+41062630 MsG0580026631.01.T01:CDS
ATTGGTTTCCGACACCGTTA+TGG 0.372640 5:+41061447 MsG0580026631.01.T01:CDS
CTACTTGTCAGGACACTCTT+GGG 0.392289 5:+41061786 MsG0580026631.01.T01:CDS
TGAGAATCCTCCTAATCCTT+TGG 0.392936 5:+41061649 MsG0580026631.01.T01:CDS
ATCCACTTCCTTGAACTTGT+AGG 0.408991 5:-41061382 None:intergenic
AATTGTCGCAAGGCGAGCTC+CGG 0.415248 5:-41062199 None:intergenic
GTTTATCACCCACTGAGTAT+AGG 0.418704 5:-41062389 None:intergenic
TGAGCCAAACTACTTCATTA+GGG 0.424113 5:-41062084 None:intergenic
GGGATTTACTTACCATTCTC+CGG 0.424174 5:+41061469 MsG0580026631.01.T01:CDS
TCACCCCTAATGAAGTAGTT+TGG 0.424887 5:+41062080 MsG0580026631.01.T01:CDS
GCGAAATAAACCACCTATAG+AGG 0.425326 5:-41061994 None:intergenic
TGTGAAATAGTCCAATTCTC+TGG 0.433730 5:-41062043 None:intergenic
GACTATTTCACAAAGGATCA+TGG 0.434662 5:+41062054 MsG0580026631.01.T01:CDS
GTCCTACAAGTTCAAGGAAG+TGG 0.434770 5:+41061380 MsG0580026631.01.T01:CDS
ACCTACTCAGGAGATGTATC+AGG 0.438160 5:+41062495 MsG0580026631.01.T01:CDS
TTAGAGTAATGGAAGAAGTA+AGG 0.438852 5:-41062265 None:intergenic
TAGAGGCTTGGTCCAAGCTT+CGG 0.438929 5:+41062317 MsG0580026631.01.T01:CDS
TCCAAATCTTGATGACTTCG+TGG 0.439528 5:+41061847 MsG0580026631.01.T01:CDS
CGGGCAATAACCAAAGGATT+AGG 0.443691 5:-41061659 None:intergenic
GAAGAAAGAGGTGAAGCATA+TGG 0.444408 5:+41062339 MsG0580026631.01.T01:CDS
ACATATCTCATGGCGGTGTA+AGG 0.452779 5:-41062433 None:intergenic
ACGTACCTCTTCTTGGTACC+CGG 0.454187 5:+41062158 MsG0580026631.01.T01:CDS
TGAGAGATTCCAAGAGGGCT+AGG 0.458062 5:+41062695 MsG0580026631.01.T01:CDS
ACTACTTGTCAGGACACTCT+TGG 0.458910 5:+41061785 MsG0580026631.01.T01:CDS
GGATGGGCTTCTCTTTCATC+GGG 0.460474 5:-41062228 None:intergenic
CAGACTCATAACTGCAGTAT+CGG 0.461148 5:-41062738 None:intergenic
GCATCTAGCTATGGAGAGTC+GGG 0.465425 5:+41062519 MsG0580026631.01.T01:CDS
TTCTTGCACTACTCATCTAT+GGG 0.467340 5:+41061813 MsG0580026631.01.T01:CDS
CCTTCCACTTCCTATGCTTG+AGG 0.471706 5:+41062781 MsG0580026631.01.T01:CDS
ACGGGCACCCCTAGCCCTCT+TGG 0.474104 5:-41062704 None:intergenic
AAGCATATGGGTGTGAGGTC+CGG 0.476327 5:+41062352 MsG0580026631.01.T01:CDS
GATCTTCCACTCCAAGAATC+CGG 0.478570 5:+41061886 MsG0580026631.01.T01:CDS
TGAGAACTTGATCATGACTT+TGG 0.483224 5:+41062576 MsG0580026631.01.T01:CDS
GGATTATCATGGAAAGTCTT+CGG 0.484748 5:-41062022 None:intergenic
CTCCAAGAATCTTGTCACTA+AGG 0.485436 5:+41061709 MsG0580026631.01.T01:CDS
GCATGCCAATCTTCTCAGCT+TGG 0.488412 5:-41062411 None:intergenic
AGCATCTAGCTATGGAGAGT+CGG 0.488579 5:+41062518 MsG0580026631.01.T01:CDS
CAACCTCAAAACTACTTGTC+AGG 0.489315 5:+41061775 MsG0580026631.01.T01:CDS
AGTATCGGGCATAGAAGTTA+CGG 0.490755 5:-41062723 None:intergenic
ATCCACATTAGTCCGGAGAA+TGG 0.491968 5:-41061481 None:intergenic
TGGATGGGCTTCTCTTTCAT+CGG 0.492309 5:-41062229 None:intergenic
AATCGATCTGGCAAGGGTCG+TGG 0.492551 5:+41061947 MsG0580026631.01.T01:CDS
TAACGGTGTCGGAAACCAAT+CGG 0.497496 5:-41061444 None:intergenic
GACTAAGTCCTACAAGTTCA+AGG 0.498146 5:+41061374 MsG0580026631.01.T01:CDS
TCAGCTAGCAAAGTAGGAAC+CGG 0.498881 5:-41061905 None:intergenic
GAAATCTTCTCTTATTCCCG+TGG 0.502333 5:-41062293 None:intergenic
ATAAACCAAGCTGAGAAGAT+TGG 0.502507 5:+41062406 MsG0580026631.01.T01:CDS
GAGCTCGCCTTGCGACAATT+CGG 0.503682 5:+41062202 MsG0580026631.01.T01:CDS
TCCAATTCTCTGGATTATCA+TGG 0.504669 5:-41062033 None:intergenic
CATGCTATTCACAATCGATC+TGG 0.506622 5:+41061935 MsG0580026631.01.T01:CDS
GTTATAGTTGATTCCACCCC+GGG 0.510038 5:-41062176 None:intergenic
ATAGGCCTCATGAGCAATAC+CGG 0.515709 5:-41062371 None:intergenic
CCGTGGGTGCATTAGAGTAA+TGG 0.520035 5:-41062276 None:intergenic
CGTACCTCTTCTTGGTACCC+GGG 0.521305 5:+41062159 MsG0580026631.01.T01:CDS
GAGAGATTCCAAGAGGGCTA+GGG 0.522300 5:+41062696 MsG0580026631.01.T01:CDS
AGACTCATAACTGCAGTATC+GGG 0.526839 5:-41062737 None:intergenic
AACTTGATCATGACTTTGGA+TGG 0.529065 5:+41062580 MsG0580026631.01.T01:CDS
GAGAAGATTTCATAGAGGCT+TGG 0.529930 5:+41062305 MsG0580026631.01.T01:CDS
AGTAAGGAGATGTAGCAAGA+TGG 0.531249 5:-41062249 None:intergenic
ATTGTCGCAAGGCGAGCTCC+GGG 0.532138 5:-41062198 None:intergenic
AGAAAGAATTGGCTAAAGCT+AGG 0.533890 5:+41062641 MsG0580026631.01.T01:CDS
AAATCCTCAAGCATAGGAAG+TGG 0.534701 5:-41062785 None:intergenic
AAGAAAGAGGTGAAGCATAT+GGG 0.537876 5:+41062340 MsG0580026631.01.T01:CDS
GTAGGTGGTAGTAGAGGCAT+AGG 0.539310 5:-41062478 None:intergenic
CCATTACTCTAATGCACCCA+CGG 0.542274 5:+41062276 MsG0580026631.01.T01:CDS
AGAGTCAAAGAAATCATCTT+CGG 0.542960 5:+41062118 MsG0580026631.01.T01:CDS
AGATTTGGCACTCAAGATCA+AGG 0.544610 5:+41061419 MsG0580026631.01.T01:CDS
TATGTGTCAGCTAGCAAAGT+AGG 0.548247 5:-41061911 None:intergenic
GTATCGGGCATAGAAGTTAC+GGG 0.555847 5:-41062722 None:intergenic
AGTAGAGGCATAGGCATGGT+TGG 0.558446 5:-41062469 None:intergenic
AAAGAAATCATCTTCGGTGG+CGG 0.558678 5:+41062124 MsG0580026631.01.T01:CDS
AGGAGATGTAGCAAGATGGA+TGG 0.559355 5:-41062245 None:intergenic
AGAGTCGGGAGAAGCATCAG+TGG 0.564445 5:+41062533 MsG0580026631.01.T01:CDS
GTATCAGGAGCATCTAGCTA+TGG 0.564905 5:+41062510 MsG0580026631.01.T01:CDS
GTGTACCTCTCCTCTATAGG+TGG 0.566253 5:+41061984 MsG0580026631.01.T01:CDS
GGAGATGTAGCAAGATGGAT+GGG 0.569697 5:-41062244 None:intergenic
CTCAAGATCAAGGATCCGAT+TGG 0.570203 5:+41061429 MsG0580026631.01.T01:CDS
GTCACTAAGGCTCACATCCG+AGG 0.572690 5:+41061722 MsG0580026631.01.T01:CDS
AAATCTTCTCTTATTCCCGT+GGG 0.573701 5:-41062292 None:intergenic
ATTTCTTTGACTCTAGCAGC+GGG 0.575600 5:-41062109 None:intergenic
GTCCAAGCTTCGGAAGAAAG+AGG 0.577189 5:+41062327 MsG0580026631.01.T01:CDS
AAACAGAAATCCTCAAGCAT+AGG 0.577396 5:-41062791 None:intergenic
TGGTTTCCGACACCGTTATG+GGG 0.582921 5:+41061449 MsG0580026631.01.T01:CDS
GTGGAGGACTAGATACTATG+AGG 0.585441 5:+41062552 MsG0580026631.01.T01:CDS
CCTCTTCTTGGTACCCGGGG+TGG 0.586370 5:+41062163 MsG0580026631.01.T01:CDS
TGAGTCTGAGTCGGAGTCTG+AGG 0.586385 5:+41062753 MsG0580026631.01.T01:CDS
TATTCACAATCGATCTGGCA+AGG 0.587344 5:+41061940 MsG0580026631.01.T01:CDS
TCACATCCGAGGGTTCACTT+TGG 0.596158 5:+41061733 MsG0580026631.01.T01:CDS
TGGTAAGTAAATCCCCATAA+CGG 0.597170 5:-41061461 None:intergenic
GTCGGGAGAAGCATCAGTGG+AGG 0.598108 5:+41062536 MsG0580026631.01.T01:CDS
GCCTCTACTACCACCTACTC+AGG 0.600265 5:+41062483 MsG0580026631.01.T01:CDS
AGATGCAGACACATATCTCA+TGG 0.600831 5:-41062443 None:intergenic
TGATACATCTCCTGAGTAGG+TGG 0.602402 5:-41062493 None:intergenic
GATACTCCAAAGTGAACCCT+CGG 0.602882 5:-41061739 None:intergenic
CCTCAAGCATAGGAAGTGGA+AGG 0.603245 5:-41062781 None:intergenic
AGAGATTCCAAGAGGGCTAG+GGG 0.603561 5:+41062697 MsG0580026631.01.T01:CDS
GTAAATCCCCATAACGGTGT+CGG 0.604581 5:-41061455 None:intergenic
TGGTCTTGAGATGAAGATCA+CGG 0.605004 5:-41061679 None:intergenic
GGTCTTGAGATGAAGATCAC+GGG 0.606361 5:-41061678 None:intergenic
ATTCACAATCGATCTGGCAA+GGG 0.608229 5:+41061941 MsG0580026631.01.T01:CDS
TAGGAACCGGATTCTTGGAG+TGG 0.612664 5:-41061892 None:intergenic
TCCTGAGTAGGTGGTAGTAG+AGG 0.612779 5:-41062484 None:intergenic
TACCATTCTCCGGACTAATG+TGG 0.613862 5:+41061479 MsG0580026631.01.T01:CDS
CCACCCCGGGTACCAAGAAG+AGG 0.614269 5:-41062163 None:intergenic
GCAATAACCAAAGGATTAGG+AGG 0.614636 5:-41061656 None:intergenic
GAGGTCCGGTATTGCTCATG+AGG 0.617360 5:+41062366 MsG0580026631.01.T01:CDS
AATAAGAGAAGATTTCATAG+AGG 0.618613 5:+41062300 MsG0580026631.01.T01:CDS
TACTTGTCAGGACACTCTTG+GGG 0.629137 5:+41061787 MsG0580026631.01.T01:CDS
GGATTCTCAAGTCCCGCGAA+AGG 0.634160 5:-41061635 None:intergenic
TCATGAGGCCTATACTCAGT+GGG 0.635280 5:+41062381 MsG0580026631.01.T01:CDS
TCACTAAGGCTCACATCCGA+GGG 0.640943 5:+41061723 MsG0580026631.01.T01:CDS
TCCTGATACATCTCCTGAGT+AGG 0.641029 5:-41062496 None:intergenic
GTCAAAGAAATCATCTTCGG+TGG 0.641743 5:+41062121 MsG0580026631.01.T01:CDS
CATTACTCTAATGCACCCAC+GGG 0.643507 5:+41062277 MsG0580026631.01.T01:CDS
TATCATGGAAAGTCTTCGGA+AGG 0.643935 5:-41062018 None:intergenic
GGTTATAGTTGATTCCACCC+CGG 0.646112 5:-41062177 None:intergenic
CGGGAAACCGAATTGTCGCA+AGG 0.646419 5:-41062209 None:intergenic
GACAAGATTCTTGGAGACAT+CGG 0.649605 5:-41061702 None:intergenic
CTCATGAGGCCTATACTCAG+TGG 0.650912 5:+41062380 MsG0580026631.01.T01:CDS
CTGCAGTTATGAGTCTGAGT+CGG 0.651433 5:+41062744 MsG0580026631.01.T01:CDS
AGGTGAAGCATATGGGTGTG+AGG 0.651839 5:+41062347 MsG0580026631.01.T01:CDS
GGGTGGAATCAACTATAACC+CGG 0.652181 5:+41062180 MsG0580026631.01.T01:CDS
AGAATTGGACTATTTCACAA+AGG 0.657073 5:+41062047 MsG0580026631.01.T01:CDS
GATTTCTTTGACTCTAGCAG+CGG 0.659460 5:-41062110 None:intergenic
AAGATTCTTGGAGACATCGG+TGG 0.663637 5:-41061699 None:intergenic
AGATCACGGGCAATAACCAA+AGG 0.664972 5:-41061665 None:intergenic
CAGATCGATTGTGAATAGCA+TGG 0.667522 5:-41061934 None:intergenic
GAGCCAAACTACTTCATTAG+GGG 0.672574 5:-41062083 None:intergenic
AGATGAACAGAAGACTCATG+AGG 0.672759 5:+41062606 MsG0580026631.01.T01:CDS
TGCTTATGAGAGATTCCAAG+AGG 0.673224 5:+41062689 MsG0580026631.01.T01:CDS
GTACCTCTTCTTGGTACCCG+GGG 0.673824 5:+41062160 MsG0580026631.01.T01:CDS
TGGTAGTAGAGGCATAGGCA+TGG 0.682577 5:-41062473 None:intergenic
ATAAACCACCTATAGAGGAG+AGG 0.691057 5:-41061989 None:intergenic
GCTTATGAGAGATTCCAAGA+GGG 0.711666 5:+41062690 MsG0580026631.01.T01:CDS
TGCAGACACATATCTCATGG+CGG 0.749908 5:-41062440 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGACATTAAAGAAAGAAT+TGG + Chr5:41062630-41062649 MsG0580026631.01.T01:CDS 20.0%
! AATAAGAGAAGATTTCATAG+AGG + Chr5:41062300-41062319 MsG0580026631.01.T01:CDS 25.0%
AGAATTGGACTATTTCACAA+AGG + Chr5:41062047-41062066 MsG0580026631.01.T01:CDS 30.0%
AGAGTCAAAGAAATCATCTT+CGG + Chr5:41062118-41062137 MsG0580026631.01.T01:CDS 30.0%
! TTAGAGTAATGGAAGAAGTA+AGG - Chr5:41062268-41062287 None:intergenic 30.0%
AAATCTTCTCTTATTCCCGT+GGG - Chr5:41062295-41062314 None:intergenic 35.0%
AACTTGATCATGACTTTGGA+TGG + Chr5:41062580-41062599 MsG0580026631.01.T01:CDS 35.0%
AAGAAAGAGGTGAAGCATAT+GGG + Chr5:41062340-41062359 MsG0580026631.01.T01:CDS 35.0%
AGAAAGAATTGGCTAAAGCT+AGG + Chr5:41062641-41062660 MsG0580026631.01.T01:CDS 35.0%
ATAAACCAAGCTGAGAAGAT+TGG + Chr5:41062406-41062425 MsG0580026631.01.T01:CDS 35.0%
ATGGATCTATCTATTGCTAG+GGG + Chr5:41061609-41061628 MsG0580026631.01.T01:intron 35.0%
ATTCTTGCACTACTCATCTA+TGG + Chr5:41061812-41061831 MsG0580026631.01.T01:CDS 35.0%
GACTATTTCACAAAGGATCA+TGG + Chr5:41062054-41062073 MsG0580026631.01.T01:CDS 35.0%
GATGGATCTATCTATTGCTA+GGG + Chr5:41061608-41061627 MsG0580026631.01.T01:intron 35.0%
GGATTATCATGGAAAGTCTT+CGG - Chr5:41062025-41062044 None:intergenic 35.0%
TCCAATTCTCTGGATTATCA+TGG - Chr5:41062036-41062055 None:intergenic 35.0%
TCCATGATAATCCAGAGAAT+TGG + Chr5:41062032-41062051 MsG0580026631.01.T01:CDS 35.0%
TGAGAACTTGATCATGACTT+TGG + Chr5:41062576-41062595 MsG0580026631.01.T01:CDS 35.0%
TGAGCCAAACTACTTCATTA+GGG - Chr5:41062087-41062106 None:intergenic 35.0%
TGGTAAGTAAATCCCCATAA+CGG - Chr5:41061464-41061483 None:intergenic 35.0%
TGTGAAATAGTCCAATTCTC+TGG - Chr5:41062046-41062065 None:intergenic 35.0%
TTCTTGCACTACTCATCTAT+GGG + Chr5:41061813-41061832 MsG0580026631.01.T01:CDS 35.0%
TTTCTTAACGTACCTCTTCT+TGG + Chr5:41062151-41062170 MsG0580026631.01.T01:CDS 35.0%
! TGATGGATCTATCTATTGCT+AGG + Chr5:41061607-41061626 MsG0580026631.01.T01:intron 35.0%
!! AGTTTTATGATCGGGAGTAT+CGG + Chr5:41061529-41061548 MsG0580026631.01.T01:intron 35.0%
!! CTCTAGTGCAGTTTTATGAT+CGG + Chr5:41061520-41061539 MsG0580026631.01.T01:intron 35.0%
!! TCTAGTGCAGTTTTATGATC+GGG + Chr5:41061521-41061540 MsG0580026631.01.T01:intron 35.0%
!! TTTGGCTAGTTTGAGAGATT+TGG + Chr5:41061404-41061423 MsG0580026631.01.T01:CDS 35.0%
AAAGAAATCATCTTCGGTGG+CGG + Chr5:41062124-41062143 MsG0580026631.01.T01:CDS 40.0%
AGACTCATAACTGCAGTATC+GGG - Chr5:41062740-41062759 None:intergenic 40.0%
AGATGAACAGAAGACTCATG+AGG + Chr5:41062606-41062625 MsG0580026631.01.T01:CDS 40.0%
AGATGCAGACACATATCTCA+TGG - Chr5:41062446-41062465 None:intergenic 40.0%
AGATTTGGCACTCAAGATCA+AGG + Chr5:41061419-41061438 MsG0580026631.01.T01:CDS 40.0%
AGCCTTAGTGACAAGATTCT+TGG - Chr5:41061714-41061733 None:intergenic 40.0%
AGTAAGGAGATGTAGCAAGA+TGG - Chr5:41062252-41062271 None:intergenic 40.0%
ATAAACCACCTATAGAGGAG+AGG - Chr5:41061992-41062011 None:intergenic 40.0%
ATCCACTTCCTTGAACTTGT+AGG - Chr5:41061385-41061404 None:intergenic 40.0%
ATTCACAATCGATCTGGCAA+GGG + Chr5:41061941-41061960 MsG0580026631.01.T01:CDS 40.0%
ATTTCTTTGACTCTAGCAGC+GGG - Chr5:41062112-41062131 None:intergenic 40.0%
CAACCTCAAAACTACTTGTC+AGG + Chr5:41061775-41061794 MsG0580026631.01.T01:CDS 40.0%
CAGACTCATAACTGCAGTAT+CGG - Chr5:41062741-41062760 None:intergenic 40.0%
CAGATCGATTGTGAATAGCA+TGG - Chr5:41061937-41061956 None:intergenic 40.0%
CATGCTATTCACAATCGATC+TGG + Chr5:41061935-41061954 MsG0580026631.01.T01:CDS 40.0%
CTCCAAGAATCTTGTCACTA+AGG + Chr5:41061709-41061728 MsG0580026631.01.T01:CDS 40.0%
GAAATCTTCTCTTATTCCCG+TGG - Chr5:41062296-41062315 None:intergenic 40.0%
GAAGAAAGAGGTGAAGCATA+TGG + Chr5:41062339-41062358 MsG0580026631.01.T01:CDS 40.0%
GACAAGATTCTTGGAGACAT+CGG - Chr5:41061705-41061724 None:intergenic 40.0%
GACTAAGTCCTACAAGTTCA+AGG + Chr5:41061374-41061393 MsG0580026631.01.T01:CDS 40.0%
GAGAAGATTTCATAGAGGCT+TGG + Chr5:41062305-41062324 MsG0580026631.01.T01:CDS 40.0%
GAGCCAAACTACTTCATTAG+GGG - Chr5:41062086-41062105 None:intergenic 40.0%
GATTTCTTTGACTCTAGCAG+CGG - Chr5:41062113-41062132 None:intergenic 40.0%
GCAATAACCAAAGGATTAGG+AGG - Chr5:41061659-41061678 None:intergenic 40.0%
GCGAAATAAACCACCTATAG+AGG - Chr5:41061997-41062016 None:intergenic 40.0%
GCTTATGAGAGATTCCAAGA+GGG + Chr5:41062690-41062709 MsG0580026631.01.T01:CDS 40.0%
GGGATTTACTTACCATTCTC+CGG + Chr5:41061469-41061488 MsG0580026631.01.T01:CDS 40.0%
GTCAAAGAAATCATCTTCGG+TGG + Chr5:41062121-41062140 MsG0580026631.01.T01:CDS 40.0%
GTGAGCCAAACTACTTCATT+AGG - Chr5:41062088-41062107 None:intergenic 40.0%
GTTTATCACCCACTGAGTAT+AGG - Chr5:41062392-41062411 None:intergenic 40.0%
TATCATGGAAAGTCTTCGGA+AGG - Chr5:41062021-41062040 None:intergenic 40.0%
TATGTGTCAGCTAGCAAAGT+AGG - Chr5:41061914-41061933 None:intergenic 40.0%
TATTCACAATCGATCTGGCA+AGG + Chr5:41061940-41061959 MsG0580026631.01.T01:CDS 40.0%
TCACCCCTAATGAAGTAGTT+TGG + Chr5:41062080-41062099 MsG0580026631.01.T01:CDS 40.0%
TCCACGAAGTCATCAAGATT+TGG - Chr5:41061851-41061870 None:intergenic 40.0%
TGAGAATCCTCCTAATCCTT+TGG + Chr5:41061649-41061668 MsG0580026631.01.T01:CDS 40.0%
TGCTTATGAGAGATTCCAAG+AGG + Chr5:41062689-41062708 MsG0580026631.01.T01:CDS 40.0%
TGGATCTATCTATTGCTAGG+GGG + Chr5:41061610-41061629 MsG0580026631.01.T01:intron 40.0%
! AGTATCGGGCATAGAAGTTA+CGG - Chr5:41062726-41062745 None:intergenic 40.0%
! CAAGTTCAAGGAAGTGGATT+TGG + Chr5:41061386-41061405 MsG0580026631.01.T01:CDS 40.0%
! CACTTTTCCTGACTTTCAGT+TGG + Chr5:41061557-41061576 MsG0580026631.01.T01:intron 40.0%
! GCTTTTCATCCACATTAGTC+CGG - Chr5:41061491-41061510 None:intergenic 40.0%
! TCCAAATCTTGATGACTTCG+TGG + Chr5:41061847-41061866 MsG0580026631.01.T01:CDS 40.0%
! TGGTCTTGAGATGAAGATCA+CGG - Chr5:41061682-41061701 None:intergenic 40.0%
!! TGTCCTGACAAGTAGTTTTG+AGG - Chr5:41061781-41061800 None:intergenic 40.0%
!!! CTGACAAGTAGTTTTGAGGT+TGG - Chr5:41061777-41061796 None:intergenic 40.0%
AAGATTCTTGGAGACATCGG+TGG - Chr5:41061702-41061721 None:intergenic 45.0%
ACATATCTCATGGCGGTGTA+AGG - Chr5:41062436-41062455 None:intergenic 45.0%
ACCTACTCAGGAGATGTATC+AGG + Chr5:41062495-41062514 MsG0580026631.01.T01:CDS 45.0%
ACTACTTGTCAGGACACTCT+TGG + Chr5:41061785-41061804 MsG0580026631.01.T01:CDS 45.0%
AGATCACGGGCAATAACCAA+AGG - Chr5:41061668-41061687 None:intergenic 45.0%
AGCATCTAGCTATGGAGAGT+CGG + Chr5:41062518-41062537 MsG0580026631.01.T01:CDS 45.0%
AGGAGATGTAGCAAGATGGA+TGG - Chr5:41062248-41062267 None:intergenic 45.0%
ATAGGCCTCATGAGCAATAC+CGG - Chr5:41062374-41062393 None:intergenic 45.0%
ATCCACATTAGTCCGGAGAA+TGG - Chr5:41061484-41061503 None:intergenic 45.0%
CAAAGTAGGAACCGGATTCT+TGG - Chr5:41061900-41061919 None:intergenic 45.0%
CAAGAAAAAGCCACGAGTGT+GGG - Chr5:41061585-41061604 None:intergenic 45.0%
CATTACTCTAATGCACCCAC+GGG + Chr5:41062277-41062296 MsG0580026631.01.T01:CDS 45.0%
CCATTACTCTAATGCACCCA+CGG + Chr5:41062276-41062295 MsG0580026631.01.T01:CDS 45.0%
CGGGCAATAACCAAAGGATT+AGG - Chr5:41061662-41061681 None:intergenic 45.0%
CTACTTGTCAGGACACTCTT+GGG + Chr5:41061786-41061805 MsG0580026631.01.T01:CDS 45.0%
CTCAAGATCAAGGATCCGAT+TGG + Chr5:41061429-41061448 MsG0580026631.01.T01:CDS 45.0%
CTGCAGTTATGAGTCTGAGT+CGG + Chr5:41062744-41062763 MsG0580026631.01.T01:CDS 45.0%
GATACTCCAAAGTGAACCCT+CGG - Chr5:41061742-41061761 None:intergenic 45.0%
GATCTTCCACTCCAAGAATC+CGG + Chr5:41061886-41061905 MsG0580026631.01.T01:CDS 45.0%
GGAGATGTAGCAAGATGGAT+GGG - Chr5:41062247-41062266 None:intergenic 45.0%
GGGTGGAATCAACTATAACC+CGG + Chr5:41062180-41062199 MsG0580026631.01.T01:CDS 45.0%
GGTCTTGAGATGAAGATCAC+GGG - Chr5:41061681-41061700 None:intergenic 45.0%
GTAAATCCCCATAACGGTGT+CGG - Chr5:41061458-41061477 None:intergenic 45.0%
GTATCGGGCATAGAAGTTAC+GGG - Chr5:41062725-41062744 None:intergenic 45.0%
GTCCTACAAGTTCAAGGAAG+TGG + Chr5:41061380-41061399 MsG0580026631.01.T01:CDS 45.0%
GTGGAGGACTAGATACTATG+AGG + Chr5:41062552-41062571 MsG0580026631.01.T01:CDS 45.0%
GTTGTGTACCTCTCCTCTAT+AGG + Chr5:41061981-41062000 MsG0580026631.01.T01:CDS 45.0%
TACCATTCTCCGGACTAATG+TGG + Chr5:41061479-41061498 MsG0580026631.01.T01:CDS 45.0%
TACTTGTCAGGACACTCTTG+GGG + Chr5:41061787-41061806 MsG0580026631.01.T01:CDS 45.0%
TCAGCTAGCAAAGTAGGAAC+CGG - Chr5:41061908-41061927 None:intergenic 45.0%
TCATGAGGCCTATACTCAGT+GGG + Chr5:41062381-41062400 MsG0580026631.01.T01:CDS 45.0%
TCCTGATACATCTCCTGAGT+AGG - Chr5:41062499-41062518 None:intergenic 45.0%
TGATACATCTCCTGAGTAGG+TGG - Chr5:41062496-41062515 None:intergenic 45.0%
TGCAGACACATATCTCATGG+CGG - Chr5:41062443-41062462 None:intergenic 45.0%
TTGGTTTCCGACACCGTTAT+GGG + Chr5:41061448-41061467 MsG0580026631.01.T01:CDS 45.0%
! ATTGGTTTCCGACACCGTTA+TGG + Chr5:41061447-41061466 MsG0580026631.01.T01:CDS 45.0%
! GGTTATAGTTGATTCCACCC+CGG - Chr5:41062180-41062199 None:intergenic 45.0%
! GTTATAGTTGATTCCACCCC+GGG - Chr5:41062179-41062198 None:intergenic 45.0%
! TAACGGTGTCGGAAACCAAT+CGG - Chr5:41061447-41061466 None:intergenic 45.0%
! TGGATGGGCTTCTCTTTCAT+CGG - Chr5:41062232-41062251 None:intergenic 45.0%
!! CGTGGCTTTTTCTTGCTTGA+TGG + Chr5:41061590-41061609 MsG0580026631.01.T01:intron 45.0%
!! GTATCAGGAGCATCTAGCTA+TGG + Chr5:41062510-41062529 MsG0580026631.01.T01:CDS 45.0%
AAGCATATGGGTGTGAGGTC+CGG + Chr5:41062352-41062371 MsG0580026631.01.T01:CDS 50.0%
ACGTACCTCTTCTTGGTACC+CGG + Chr5:41062158-41062177 MsG0580026631.01.T01:CDS 50.0%
AGAGATTCCAAGAGGGCTAG+GGG + Chr5:41062697-41062716 MsG0580026631.01.T01:CDS 50.0%
AGGTGAAGCATATGGGTGTG+AGG + Chr5:41062347-41062366 MsG0580026631.01.T01:CDS 50.0%
CACCTCTTTCTTCCGAAGCT+TGG - Chr5:41062332-41062351 None:intergenic 50.0%
CCGTGGGTGCATTAGAGTAA+TGG - Chr5:41062279-41062298 None:intergenic 50.0%
CTCATGAGGCCTATACTCAG+TGG + Chr5:41062380-41062399 MsG0580026631.01.T01:CDS 50.0%
GAGAGATTCCAAGAGGGCTA+GGG + Chr5:41062696-41062715 MsG0580026631.01.T01:CDS 50.0%
GCAAGAAAAAGCCACGAGTG+TGG - Chr5:41061586-41061605 None:intergenic 50.0%
GCATCTAGCTATGGAGAGTC+GGG + Chr5:41062519-41062538 MsG0580026631.01.T01:CDS 50.0%
GCATGCCAATCTTCTCAGCT+TGG - Chr5:41062414-41062433 None:intergenic 50.0%
GTCCAAGCTTCGGAAGAAAG+AGG + Chr5:41062327-41062346 MsG0580026631.01.T01:CDS 50.0%
GTGTACCTCTCCTCTATAGG+TGG + Chr5:41061984-41062003 MsG0580026631.01.T01:CDS 50.0%
TAGGAACCGGATTCTTGGAG+TGG - Chr5:41061895-41061914 None:intergenic 50.0%
TCACATCCGAGGGTTCACTT+TGG + Chr5:41061733-41061752 MsG0580026631.01.T01:CDS 50.0%
TCACTAAGGCTCACATCCGA+GGG + Chr5:41061723-41061742 MsG0580026631.01.T01:CDS 50.0%
TCCTGAGTAGGTGGTAGTAG+AGG - Chr5:41062487-41062506 None:intergenic 50.0%
TGAGAGATTCCAAGAGGGCT+AGG + Chr5:41062695-41062714 MsG0580026631.01.T01:CDS 50.0%
TGGTTTCCGACACCGTTATG+GGG + Chr5:41061449-41061468 MsG0580026631.01.T01:CDS 50.0%
! AGTAGAGGCATAGGCATGGT+TGG - Chr5:41062472-41062491 None:intergenic 50.0%
! GGATGGGCTTCTCTTTCATC+GGG - Chr5:41062231-41062250 None:intergenic 50.0%
! GTAGGTGGTAGTAGAGGCAT+AGG - Chr5:41062481-41062500 None:intergenic 50.0%
! TAGAGGCTTGGTCCAAGCTT+CGG + Chr5:41062317-41062336 MsG0580026631.01.T01:CDS 50.0%
! TGGTAGTAGAGGCATAGGCA+TGG - Chr5:41062476-41062495 None:intergenic 50.0%
AATCGATCTGGCAAGGGTCG+TGG + Chr5:41061947-41061966 MsG0580026631.01.T01:CDS 55.0%
AATTGTCGCAAGGCGAGCTC+CGG - Chr5:41062202-41062221 None:intergenic 55.0%
CGGGAAACCGAATTGTCGCA+AGG - Chr5:41062212-41062231 None:intergenic 55.0%
CGTACCTCTTCTTGGTACCC+GGG + Chr5:41062159-41062178 MsG0580026631.01.T01:CDS 55.0%
GAGCTCGCCTTGCGACAATT+CGG + Chr5:41062202-41062221 MsG0580026631.01.T01:CDS 55.0%
GAGGTCCGGTATTGCTCATG+AGG + Chr5:41062366-41062385 MsG0580026631.01.T01:CDS 55.0%
GCCTCTACTACCACCTACTC+AGG + Chr5:41062483-41062502 MsG0580026631.01.T01:CDS 55.0%
GGATTCTCAAGTCCCGCGAA+AGG - Chr5:41061638-41061657 None:intergenic 55.0%
GTACCTCTTCTTGGTACCCG+GGG + Chr5:41062160-41062179 MsG0580026631.01.T01:CDS 55.0%
GTCACTAAGGCTCACATCCG+AGG + Chr5:41061722-41061741 MsG0580026631.01.T01:CDS 55.0%
GTGGGCACCAACTGAAAGTC+AGG - Chr5:41061567-41061586 None:intergenic 55.0%
TGAGTCTGAGTCGGAGTCTG+AGG + Chr5:41062753-41062772 MsG0580026631.01.T01:CDS 55.0%
!! AGAGTCGGGAGAAGCATCAG+TGG + Chr5:41062533-41062552 MsG0580026631.01.T01:CDS 55.0%
!! TTGCTAGGGGGTACCTTTCG+CGG + Chr5:41061622-41061641 MsG0580026631.01.T01:intron 55.0%
ATTGTCGCAAGGCGAGCTCC+GGG - Chr5:41062201-41062220 None:intergenic 60.0%
! TCAGTTGGTGCCCACACTCG+TGG + Chr5:41061572-41061591 MsG0580026631.01.T01:intron 60.0%
!! GTCGGGAGAAGCATCAGTGG+AGG + Chr5:41062536-41062555 MsG0580026631.01.T01:CDS 60.0%
!! TGCTAGGGGGTACCTTTCGC+GGG + Chr5:41061623-41061642 MsG0580026631.01.T01:intron 60.0%
CCACCCCGGGTACCAAGAAG+AGG - Chr5:41062166-41062185 None:intergenic 65.0%
CCTCTTCTTGGTACCCGGGG+TGG + Chr5:41062163-41062182 MsG0580026631.01.T01:CDS 65.0%
ACGGGCACCCCTAGCCCTCT+TGG - Chr5:41062707-41062726 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 41061366 41062801 41061366 ID=MsG0580026631.01;Name=MsG0580026631.01
Chr5 mRNA 41061366 41062801 41061366 ID=MsG0580026631.01.T01;Parent=MsG0580026631.01;Name=MsG0580026631.01.T01;_AED=0.47;_eAED=0.48;_QI=0|0|0|1|1|1|2|0|443
Chr5 exon 41061366 41061524 41061366 ID=MsG0580026631.01.T01:exon:9828;Parent=MsG0580026631.01.T01
Chr5 exon 41061629 41062801 41061629 ID=MsG0580026631.01.T01:exon:9829;Parent=MsG0580026631.01.T01
Chr5 CDS 41061366 41061524 41061366 ID=MsG0580026631.01.T01:cds;Parent=MsG0580026631.01.T01
Chr5 CDS 41061629 41062801 41061629 ID=MsG0580026631.01.T01:cds;Parent=MsG0580026631.01.T01
Gene Sequence

>MsG0580026631.01.T01

ATGGGGAAGACTAAGTCCTACAAGTTCAAGGAAGTGGATTTGGCTAGTTTGAGAGATTTGGCACTCAAGATCAAGGATCCGATTGGTTTCCGACACCGTTATGGGGATTTACTTACCATTCTCCGGACTAATGTGGATGAAAAGCTTGTGCACACTCTAGGGGTACCTTTCGCGGGACTTGAGAATCCTCCTAATCCTTTGGTTATTGCCCGTGATCTTCATCTCAAGACCACCGATGTCTCCAAGAATCTTGTCACTAAGGCTCACATCCGAGGGTTCACTTTGGAGTATCTACTTGAGAAAGCCAACCTCAAAACTACTTGTCAGGACACTCTTGGGGCTATTCTTGCACTACTCATCTATGGGCTTATTCTCTTTCCAAATCTTGATGACTTCGTGGACATGAATGCTATTATGATCTTCCACTCCAAGAATCCGGTTCCTACTTTGCTAGCTGACACATACCATGCTATTCACAATCGATCTGGCAAGGGTCGTGGATACATTCTTTGTTGTGTACCTCTCCTCTATAGGTGGTTTATTTCGCACCTTCCGAAGACTTTCCATGATAATCCAGAGAATTGGACTATTTCACAAAGGATCATGGCTCTCACCCCTAATGAAGTAGTTTGGCTCACTCCCGCTGCTAGAGTCAAAGAAATCATCTTCGGTGGCGGAAAGTTTCTTAACGTACCTCTTCTTGGTACCCGGGGTGGAATCAACTATAACCCGGAGCTCGCCTTGCGACAATTCGGTTTCCCGATGAAAGAGAAGCCCATCCATCTTGCTACATCTCCTTACTTCTTCCATTACTCTAATGCACCCACGGGAATAAGAGAAGATTTCATAGAGGCTTGGTCCAAGCTTCGGAAGAAAGAGGTGAAGCATATGGGTGTGAGGTCCGGTATTGCTCATGAGGCCTATACTCAGTGGGTGATAAACCAAGCTGAGAAGATTGGCATGCCTTACACCGCCATGAGATATGTGTCTGCATCTATTCCAACCATGCCTATGCCTCTACTACCACCTACTCAGGAGATGTATCAGGAGCATCTAGCTATGGAGAGTCGGGAGAAGCATCAGTGGAGGACTAGATACTATGAGGCTGAGAACTTGATCATGACTTTGGATGGAAAAGATGAACAGAAGACTCATGAGGTTTTGACATTAAAGAAAGAATTGGCTAAAGCTAGGAAAGAAATTGAAGAAAAAGATAAGTTGCTTATGAGAGATTCCAAGAGGGCTAGGGGTGCCCGTAACTTCTATGCCCGATACTGCAGTTATGAGTCTGAGTCGGAGTCTGAGGATGATCCTTCCACTTCCTATGCTTGA

Protein sequence

>MsG0580026631.01.T01

MGKTKSYKFKEVDLASLRDLALKIKDPIGFRHRYGDLLTILRTNVDEKLVHTLGVPFAGLENPPNPLVIARDLHLKTTDVSKNLVTKAHIRGFTLEYLLEKANLKTTCQDTLGAILALLIYGLILFPNLDDFVDMNAIMIFHSKNPVPTLLADTYHAIHNRSGKGRGYILCCVPLLYRWFISHLPKTFHDNPENWTISQRIMALTPNEVVWLTPAARVKEIIFGGGKFLNVPLLGTRGGINYNPELALRQFGFPMKEKPIHLATSPYFFHYSNAPTGIREDFIEAWSKLRKKEVKHMGVRSGIAHEAYTQWVINQAEKIGMPYTAMRYVSASIPTMPMPLLPPTQEMYQEHLAMESREKHQWRTRYYEAENLIMTLDGKDEQKTHEVLTLKKELAKARKEIEEKDKLLMRDSKRARGARNFYARYCSYESESESEDDPSTSYA*