AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015420.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015420.01.T01 MTR_8g096950 94.581 203 9 2 14 215 81 282 4.24e-140 393
MsG0380015420.01.T01 MTR_5g010620 75.743 202 46 2 14 214 68 267 1.48e-109 315
MsG0380015420.01.T01 MTR_5g010620 75.743 202 46 2 14 214 100 299 1.81e-109 316
MsG0380015420.01.T01 MTR_0411s0050 83.929 56 9 0 20 75 15 70 1.39e-27 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015420.01.T01 AT4G20330 65.347 202 66 3 14 214 81 279 2.70e-87 259
MsG0380015420.01.T01 AT4G21010 59.204 201 77 5 14 212 77 274 5.63e-71 218

Find 73 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTCTTGCAGTGTGAATTTA+AGG 0.122923 3:-69914731 None:intergenic
ACTATTACTGTTAGCTTATC+TGG 0.179782 3:+69914792 MsG0380015420.01.T01:three_prime_UTR
AGTCATCTTCCAAGATATTT+TGG 0.208902 3:+69912914 MsG0380015420.01.T01:CDS
TGCCCGTCGTATTCTACTTT+TGG 0.214350 3:-69913181 None:intergenic
AATAAAACTGATTAAGAAAT+AGG 0.245076 3:-69914769 None:intergenic
TCCACCTTAATGTTTGCTTT+GGG 0.248514 3:-69914177 None:intergenic
ATCCACCTTAATGTTTGCTT+TGG 0.267923 3:-69914178 None:intergenic
CAGGAGTTGTTGTTTACTTT+AGG 0.277978 3:-69914434 None:intergenic
TGAAAGCTGCAGGGCAGATT+TGG 0.288630 3:+69914106 MsG0380015420.01.T01:CDS
GTTTGCTACACAATTTAGTT+TGG 0.303400 3:+69914859 MsG0380015420.01.T01:three_prime_UTR
ATGTTTGCTTTGGGGTCATT+CGG 0.320738 3:-69914168 None:intergenic
CTCTTTGCAGTGTTGGTAGC+AGG 0.337273 3:-69914288 None:intergenic
TCCCTTGCAGTGAGCTAATC+AGG 0.340539 3:-69914453 None:intergenic
CATGCTTCATTTATTTGCTC+TGG 0.343949 3:-69913106 None:intergenic
AACACACTCCTGATAGTTTC+AGG 0.345135 3:-69914696 None:intergenic
CAATGTGATGGAAGACTTGC+AGG 0.356725 3:+69913410 MsG0380015420.01.T01:CDS
ATTGGTCAGCTTGGTTCTCT+TGG 0.364216 3:-69914385 None:intergenic
CATTGGGGTAAGCATCCTTT+AGG 0.372124 3:-69913392 None:intergenic
CTTAGACTTGGACTTGGACT+TGG 0.379977 3:-69914349 None:intergenic
TGTTTGCTTTGGGGTCATTC+GGG 0.391698 3:-69914167 None:intergenic
CATCAAACTCCAAAATATCT+TGG 0.392723 3:-69912923 None:intergenic
TGCAAGTCTTCCATCACATT+GGG 0.401716 3:-69913408 None:intergenic
GCTGACCAATTCCCATCTTC+CGG 0.404549 3:+69914398 MsG0380015420.01.T01:CDS
TGACCCCAAAGCAAACATTA+AGG 0.415737 3:+69914173 MsG0380015420.01.T01:CDS
TTGTAGGCTTTGAAAGCTGC+AGG 0.415846 3:+69914096 MsG0380015420.01.T01:intron
ATGACCTAAAGCAGCTGTTT+CGG 0.418120 3:+69914202 MsG0380015420.01.T01:CDS
GAGAAGGATCTTCAAAAGAA+TGG 0.418846 3:+69914258 MsG0380015420.01.T01:CDS
ATAGGCAAAGTATGGTCTTA+AGG 0.421161 3:+69913311 MsG0380015420.01.T01:intron
AAGCTCCGGAAGATGGGAAT+TGG 0.433158 3:-69914403 None:intergenic
GAGTTTGATGGATGTTATGT+TGG 0.441742 3:+69912936 MsG0380015420.01.T01:CDS
CTTGGACTTGGACTTGGACT+TGG 0.442430 3:-69914343 None:intergenic
TACTCCGAAACAGCTGCTTT+AGG 0.444378 3:-69914206 None:intergenic
GAAACTATCAGGAGTGTGTT+TGG 0.445326 3:+69914699 MsG0380015420.01.T01:three_prime_UTR
AGTCCTCCTCTTTGCAGTGT+TGG 0.455410 3:-69914295 None:intergenic
GATTTCATTCTTCTTAGACT+TGG 0.459783 3:-69914361 None:intergenic
TTAGCTTAAGCTAGATCAGC+AGG 0.464163 3:+69914501 MsG0380015420.01.T01:three_prime_UTR
CCACCTTAATGTTTGCTTTG+GGG 0.471247 3:-69914176 None:intergenic
CTAAAACAAATATCAAAAGT+AGG 0.482679 3:-69914558 None:intergenic
GCTGTCCAACTTTGATTCAC+AGG 0.488075 3:+69914131 MsG0380015420.01.T01:CDS
AGGACTGCAGCACAAATTGA+TGG 0.492183 3:+69914312 MsG0380015420.01.T01:CDS
ACATCAAGGGTGTAAGCAAA+TGG 0.493627 3:+69914588 MsG0380015420.01.T01:three_prime_UTR
AAGCATGCTATGTTGATATG+AGG 0.505702 3:+69913122 MsG0380015420.01.T01:CDS
GTCGTCCTGTGAATCAAAGT+TGG 0.513690 3:-69914136 None:intergenic
ATTCTTCTTAGACTTGGACT+TGG 0.515148 3:-69914355 None:intergenic
CTGCAAGTCTTCCATCACAT+TGG 0.523283 3:-69913409 None:intergenic
AAGTAGAATACGACGGGCAA+CGG 0.531226 3:+69913185 MsG0380015420.01.T01:CDS
TTCTTAATCGCGGTAAGTTG+TGG 0.537118 3:+69914970 MsG0380015420.01.T01:three_prime_UTR
TAAAACAAATATCAAAAGTA+GGG 0.539247 3:-69914557 None:intergenic
CGGGCAACGGTTCTCTTACA+AGG 0.541030 3:+69913198 MsG0380015420.01.T01:CDS
GCCTGCTTGCAGTGCTAGTG+AGG 0.541198 3:-69914909 None:intergenic
AAGATGGGAATTGGTCAGCT+TGG 0.557060 3:-69914394 None:intergenic
ACCCAAAAGTAGAATACGAC+GGG 0.561755 3:+69913179 MsG0380015420.01.T01:CDS
TCCTCACTAGCACTGCAAGC+AGG 0.564978 3:+69914908 MsG0380015420.01.T01:three_prime_UTR
GGATGCTTACCCCAATGTGA+TGG 0.574607 3:+69913398 MsG0380015420.01.T01:CDS
AGCTTCTTCAACTTATACGT+AGG 0.600973 3:+69913343 MsG0380015420.01.T01:CDS
TCCTGATTAGCTCACTGCAA+GGG 0.613343 3:+69914452 MsG0380015420.01.T01:three_prime_UTR
GGTGTAAGCAAATGGTGGAC+TGG 0.615267 3:+69914596 MsG0380015420.01.T01:three_prime_UTR
TGATATGATTGATATAGAGA+AGG 0.617718 3:+69914242 MsG0380015420.01.T01:CDS
ATTTAGTTTGGATAGATCAG+AGG 0.620679 3:+69914871 MsG0380015420.01.T01:three_prime_UTR
CTCCTGATTAGCTCACTGCA+AGG 0.620794 3:+69914451 MsG0380015420.01.T01:three_prime_UTR
CCCCAAAGCAAACATTAAGG+TGG 0.623815 3:+69914176 MsG0380015420.01.T01:CDS
AGCATGCTATGTTGATATGA+GGG 0.636991 3:+69913123 MsG0380015420.01.T01:CDS
TGTAGGCTTTGAAAGCTGCA+GGG 0.643501 3:+69914097 MsG0380015420.01.T01:intron
CGAAAATAAATTCTTAATCG+CGG 0.649037 3:+69914960 MsG0380015420.01.T01:three_prime_UTR
CTACCAACACTGCAAAGAGG+AGG 0.656479 3:+69914292 MsG0380015420.01.T01:CDS
TCAAGGGTGTAAGCAAATGG+TGG 0.658420 3:+69914591 MsG0380015420.01.T01:three_prime_UTR
CTGCTACCAACACTGCAAAG+AGG 0.665956 3:+69914289 MsG0380015420.01.T01:CDS
ACTTATACGTAGGTATCCAG+AGG 0.677982 3:+69913353 MsG0380015420.01.T01:CDS
CTTATACGTAGGTATCCAGA+GGG 0.688413 3:+69913354 MsG0380015420.01.T01:CDS
AACCCAAAAGTAGAATACGA+CGG 0.689064 3:+69913178 MsG0380015420.01.T01:CDS
GAATGGAATGTTCAAATGCG+TGG 0.692588 3:+69915027 MsG0380015420.01.T01:three_prime_UTR
GCAAGTCTTCCATCACATTG+GGG 0.693489 3:-69913407 None:intergenic
TCTATATCAATCATATCACG+AGG 0.742182 3:-69914237 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAATAAAATATTAAACA+AGG - Chr3:69914674-69914693 None:intergenic 10.0%
!! TTAACCTTAATTTATAATAA+TGG - Chr3:69913720-69913739 None:intergenic 10.0%
!! AATAAAACTGATTAAGAAAT+AGG - Chr3:69914772-69914791 None:intergenic 15.0%
!! TAAAAAACAAACAAATGAAT+AGG - Chr3:69913850-69913869 None:intergenic 15.0%
!! TAAAACAAATATCAAAAGTA+GGG - Chr3:69914560-69914579 None:intergenic 15.0%
!! TTAATTTATAATAATGGCAA+CGG - Chr3:69913714-69913733 None:intergenic 15.0%
!!! TTTTAGTTTTTATACATCAA+GGG + Chr3:69914575-69914594 MsG0380015420.01.T01:three_prime_UTR 15.0%
!! ATAAATTAAGGTTAATACTG+AGG + Chr3:69913725-69913744 MsG0380015420.01.T01:intron 20.0%
!! CTAAAACAAATATCAAAAGT+AGG - Chr3:69914561-69914580 None:intergenic 20.0%
!! GTTGCCATTATTATAAATTA+AGG + Chr3:69913713-69913732 MsG0380015420.01.T01:intron 20.0%
!! TTAATGTTTGTCTTGAAATA+TGG + Chr3:69913943-69913962 MsG0380015420.01.T01:intron 20.0%
!!! AAGAAGATCAAATGTTTTAT+GGG + Chr3:69913613-69913632 MsG0380015420.01.T01:intron 20.0%
!!! GTTATTTGTTTTTTGTCTAT+AGG + Chr3:69913293-69913312 MsG0380015420.01.T01:intron 20.0%
!!! GTTTTAGTTTTTATACATCA+AGG + Chr3:69914574-69914593 MsG0380015420.01.T01:three_prime_UTR 20.0%
!!! TCATAATGATATCTTTTTGT+AGG + Chr3:69914080-69914099 MsG0380015420.01.T01:intron 20.0%
! AACATTTGATCTTCTTCAAA+AGG - Chr3:69913609-69913628 None:intergenic 25.0%
! ACATTTGATCTTCTTCAAAA+GGG - Chr3:69913608-69913627 None:intergenic 25.0%
! ATAATAACATTGCACATTAG+TGG + Chr3:69913640-69913659 MsG0380015420.01.T01:intron 25.0%
! ATGGAAATAGAGATTATAGA+TGG + Chr3:69913962-69913981 MsG0380015420.01.T01:intron 25.0%
! CGAAAATAAATTCTTAATCG+CGG + Chr3:69914960-69914979 MsG0380015420.01.T01:three_prime_UTR 25.0%
! GTCAAAATCTTGTATATAGT+TGG + Chr3:69914038-69914057 MsG0380015420.01.T01:intron 25.0%
! TAATAACATTGCACATTAGT+GGG + Chr3:69913641-69913660 MsG0380015420.01.T01:intron 25.0%
! TGATATGATTGATATAGAGA+AGG + Chr3:69914242-69914261 MsG0380015420.01.T01:CDS 25.0%
! TGTACGACAGAAAAAATATT+GGG + Chr3:69915000-69915019 MsG0380015420.01.T01:three_prime_UTR 25.0%
! TTGTACGACAGAAAAAATAT+TGG + Chr3:69914999-69915018 MsG0380015420.01.T01:three_prime_UTR 25.0%
!! ATGAAGAAGTTATTTGCTAA+AGG - Chr3:69913271-69913290 None:intergenic 25.0%
!! GAAGAAGATCAAATGTTTTA+TGG + Chr3:69913612-69913631 MsG0380015420.01.T01:intron 25.0%
AAAAAATATTGGGCGATGAA+TGG + Chr3:69915010-69915029 MsG0380015420.01.T01:three_prime_UTR 30.0%
AAAAACATCACCTATCACTA+AGG - Chr3:69914005-69914024 None:intergenic 30.0%
AATTCTCATTTCTCACAGAT+TGG + Chr3:69913532-69913551 MsG0380015420.01.T01:intron 30.0%
ACCAAAACACCAAATCAATA+TGG - Chr3:69913058-69913077 None:intergenic 30.0%
ACCAATGAAATTCCACAATT+AGG + Chr3:69913016-69913035 MsG0380015420.01.T01:intron 30.0%
AGATTATAGATGGAACTATC+AGG + Chr3:69913972-69913991 MsG0380015420.01.T01:intron 30.0%
CATCAAACTCCAAAATATCT+TGG - Chr3:69912926-69912945 None:intergenic 30.0%
GATTTCATTCTTCTTAGACT+TGG - Chr3:69914364-69914383 None:intergenic 30.0%
TCCTAATTGTGGAATTTCAT+TGG - Chr3:69913020-69913039 None:intergenic 30.0%
TCTATATCAATCATATCACG+AGG - Chr3:69914240-69914259 None:intergenic 30.0%
TTACAAAATCTTGCTCCTTA+AGG + Chr3:69913774-69913793 MsG0380015420.01.T01:intron 30.0%
! ACTATTACTGTTAGCTTATC+TGG + Chr3:69914792-69914811 MsG0380015420.01.T01:three_prime_UTR 30.0%
! AGTCATCTTCCAAGATATTT+TGG + Chr3:69912914-69912933 MsG0380015420.01.T01:CDS 30.0%
! CTCTTACAAGGTAACTTTTA+CGG + Chr3:69913210-69913229 MsG0380015420.01.T01:intron 30.0%
! GTTTGCTACACAATTTAGTT+TGG + Chr3:69914859-69914878 MsG0380015420.01.T01:three_prime_UTR 30.0%
! TAAGGAGCAAGATTTTGTAA+TGG - Chr3:69913774-69913793 None:intergenic 30.0%
! TCGTCAAAACCATATTGATT+TGG + Chr3:69913046-69913065 MsG0380015420.01.T01:intron 30.0%
! TCTTACAAGGTAACTTTTAC+GGG + Chr3:69913211-69913230 MsG0380015420.01.T01:intron 30.0%
! TTTTGTCTATAGGCAAAGTA+TGG + Chr3:69913303-69913322 MsG0380015420.01.T01:intron 30.0%
!! ATTTAGTTTGGATAGATCAG+AGG + Chr3:69914871-69914890 MsG0380015420.01.T01:three_prime_UTR 30.0%
!!! ACCATATTGATTTGGTGTTT+TGG + Chr3:69913054-69913073 MsG0380015420.01.T01:intron 30.0%
!!! CAAGATATTTTGGAGTTTGA+TGG + Chr3:69912924-69912943 MsG0380015420.01.T01:CDS 30.0%
!!! TAGTTGGCTTTTCAATGAAT+AGG + Chr3:69914054-69914073 MsG0380015420.01.T01:intron 30.0%
AACCCAAAAGTAGAATACGA+CGG + Chr3:69913178-69913197 MsG0380015420.01.T01:CDS 35.0%
AAGCATGCTATGTTGATATG+AGG + Chr3:69913122-69913141 MsG0380015420.01.T01:CDS 35.0%
ACATGATACCGAGACATTAA+GGG + Chr3:69913907-69913926 MsG0380015420.01.T01:intron 35.0%
ACATTTCTTACAGCACCTTA+AGG - Chr3:69913792-69913811 None:intergenic 35.0%
AGCATGCTATGTTGATATGA+GGG + Chr3:69913123-69913142 MsG0380015420.01.T01:CDS 35.0%
AGCTTCTTCAACTTATACGT+AGG + Chr3:69913343-69913362 MsG0380015420.01.T01:CDS 35.0%
AGGTAGAATGACTTCTGTTA+GGG + Chr3:69913430-69913449 MsG0380015420.01.T01:intron 35.0%
ATCCACCTTAATGTTTGCTT+TGG - Chr3:69914181-69914200 None:intergenic 35.0%
ATGAGAATGGAAGCAAAAGA+AGG - Chr3:69913879-69913898 None:intergenic 35.0%
ATTCTTCTTAGACTTGGACT+TGG - Chr3:69914358-69914377 None:intergenic 35.0%
CATGCTTCATTTATTTGCTC+TGG - Chr3:69913109-69913128 None:intergenic 35.0%
CATGTAAACGTCAATGAGAA+TGG - Chr3:69913892-69913911 None:intergenic 35.0%
GAATAGGAAGTGAATGAACA+AGG - Chr3:69913834-69913853 None:intergenic 35.0%
GACGAATCAATTCCTAATTG+TGG - Chr3:69913031-69913050 None:intergenic 35.0%
GAGAAGGATCTTCAAAAGAA+TGG + Chr3:69914258-69914277 MsG0380015420.01.T01:CDS 35.0%
GTAAGCTATCTTAAGTAGCA+TGG - Chr3:69912998-69913017 None:intergenic 35.0%
TACATGATACCGAGACATTA+AGG + Chr3:69913906-69913925 MsG0380015420.01.T01:intron 35.0%
TCCACCTTAATGTTTGCTTT+GGG - Chr3:69914180-69914199 None:intergenic 35.0%
TGTCTTGCAGTGTGAATTTA+AGG - Chr3:69914734-69914753 None:intergenic 35.0%
! ATAGGCAAAGTATGGTCTTA+AGG + Chr3:69913311-69913330 MsG0380015420.01.T01:intron 35.0%
! CAGCAGGTTGAAAAATATTC+AGG + Chr3:69914517-69914536 MsG0380015420.01.T01:three_prime_UTR 35.0%
! CAGGTTGAAAAATATTCAGG+AGG + Chr3:69914520-69914539 MsG0380015420.01.T01:three_prime_UTR 35.0%
! GAGTTTGATGGATGTTATGT+TGG + Chr3:69912936-69912955 MsG0380015420.01.T01:CDS 35.0%
!! AAGATGTTTTTGAGAGTCTG+AGG + Chr3:69913152-69913171 MsG0380015420.01.T01:CDS 35.0%
!! CAGGAGTTGTTGTTTACTTT+AGG - Chr3:69914437-69914456 None:intergenic 35.0%
!! TTAAGGTGCTGTAAGAAATG+TGG + Chr3:69913791-69913810 MsG0380015420.01.T01:intron 35.0%
!! TTTAGGTTCTGAAAAAGCTC+CGG - Chr3:69914420-69914439 None:intergenic 35.0%
AACACACTCCTGATAGTTTC+AGG - Chr3:69914699-69914718 None:intergenic 40.0%
AAGTGAATGAACAAGGTAGC+AGG - Chr3:69913827-69913846 None:intergenic 40.0%
AATGAACAAGGTAGCAGGAA+AGG - Chr3:69913822-69913841 None:intergenic 40.0%
ACCCAAAAGTAGAATACGAC+GGG + Chr3:69913179-69913198 MsG0380015420.01.T01:CDS 40.0%
ACTTATACGTAGGTATCCAG+AGG + Chr3:69913353-69913372 MsG0380015420.01.T01:CDS 40.0%
AGATGACTGCAAGTAAAGCA+TGG - Chr3:69912902-69912921 None:intergenic 40.0%
AGGTCATATGCCTTAGTGAT+AGG + Chr3:69913992-69914011 MsG0380015420.01.T01:intron 40.0%
ATGACCTAAAGCAGCTGTTT+CGG + Chr3:69914202-69914221 MsG0380015420.01.T01:CDS 40.0%
CAGGTAGAATGACTTCTGTT+AGG + Chr3:69913429-69913448 MsG0380015420.01.T01:intron 40.0%
CCACCTTAATGTTTGCTTTG+GGG - Chr3:69914179-69914198 None:intergenic 40.0%
CCTTTAGGTCAAAAACAGCA+AGG - Chr3:69913380-69913399 None:intergenic 40.0%
CTTATACGTAGGTATCCAGA+GGG + Chr3:69913354-69913373 MsG0380015420.01.T01:CDS 40.0%
GAAAAAACGTCGTCAGGAAA+TGG - Chr3:69913477-69913496 None:intergenic 40.0%
GAATGGAATGTTCAAATGCG+TGG + Chr3:69915027-69915046 MsG0380015420.01.T01:three_prime_UTR 40.0%
TCACTCTTCCCTTAATGTCT+CGG - Chr3:69913918-69913937 None:intergenic 40.0%
TGACCCCAAAGCAAACATTA+AGG + Chr3:69914173-69914192 MsG0380015420.01.T01:CDS 40.0%
TGCAAGTCTTCCATCACATT+GGG - Chr3:69913411-69913430 None:intergenic 40.0%
TTAGCTTAAGCTAGATCAGC+AGG + Chr3:69914501-69914520 MsG0380015420.01.T01:three_prime_UTR 40.0%
TTCTTAATCGCGGTAAGTTG+TGG + Chr3:69914970-69914989 MsG0380015420.01.T01:three_prime_UTR 40.0%
! ACATCAAGGGTGTAAGCAAA+TGG + Chr3:69914588-69914607 MsG0380015420.01.T01:three_prime_UTR 40.0%
! GAAACTATCAGGAGTGTGTT+TGG + Chr3:69914699-69914718 MsG0380015420.01.T01:three_prime_UTR 40.0%
!! ATGTTTGCTTTGGGGTCATT+CGG - Chr3:69914171-69914190 None:intergenic 40.0%
!! TTTTTCGGCCTGAAACTATC+AGG + Chr3:69914688-69914707 MsG0380015420.01.T01:three_prime_UTR 40.0%
!!! CCTTGCTGTTTTTGACCTAA+AGG + Chr3:69913377-69913396 MsG0380015420.01.T01:CDS 40.0%
AAGATGGGAATTGGTCAGCT+TGG - Chr3:69914397-69914416 None:intergenic 45.0%
AAGTAGAATACGACGGGCAA+CGG + Chr3:69913185-69913204 MsG0380015420.01.T01:CDS 45.0%
AGGACTGCAGCACAAATTGA+TGG + Chr3:69914312-69914331 MsG0380015420.01.T01:CDS 45.0%
CATTGGGGTAAGCATCCTTT+AGG - Chr3:69913395-69913414 None:intergenic 45.0%
CCCCAAAGCAAACATTAAGG+TGG + Chr3:69914176-69914195 MsG0380015420.01.T01:CDS 45.0%
CTGAAAAAGCTCCGGAAGAT+GGG - Chr3:69914412-69914431 None:intergenic 45.0%
CTGCAAGTCTTCCATCACAT+TGG - Chr3:69913412-69913431 None:intergenic 45.0%
CTTAGACTTGGACTTGGACT+TGG - Chr3:69914352-69914371 None:intergenic 45.0%
GCAAGTCTTCCATCACATTG+GGG - Chr3:69913410-69913429 None:intergenic 45.0%
GCTACTGAAAAAACGTCGTC+AGG - Chr3:69913483-69913502 None:intergenic 45.0%
GCTGTCCAACTTTGATTCAC+AGG + Chr3:69914131-69914150 MsG0380015420.01.T01:CDS 45.0%
GTCGTCCTGTGAATCAAAGT+TGG - Chr3:69914139-69914158 None:intergenic 45.0%
TCTGAAAAAGCTCCGGAAGA+TGG - Chr3:69914413-69914432 None:intergenic 45.0%
! ATTGGTCAGCTTGGTTCTCT+TGG - Chr3:69914388-69914407 None:intergenic 45.0%
! CAATGTGATGGAAGACTTGC+AGG + Chr3:69913410-69913429 MsG0380015420.01.T01:CDS 45.0%
! TACTCCGAAACAGCTGCTTT+AGG - Chr3:69914209-69914228 None:intergenic 45.0%
! TCAAGGGTGTAAGCAAATGG+TGG + Chr3:69914591-69914610 MsG0380015420.01.T01:three_prime_UTR 45.0%
! TCCTGATTAGCTCACTGCAA+GGG + Chr3:69914452-69914471 MsG0380015420.01.T01:three_prime_UTR 45.0%
! TGCCCGTCGTATTCTACTTT+TGG - Chr3:69913184-69913203 None:intergenic 45.0%
!! ACGGTTTTAATGCCAAGGGT+TGG - Chr3:69913695-69913714 None:intergenic 45.0%
!! CGGTTTTAATGCCAAGGGTT+GGG - Chr3:69913694-69913713 None:intergenic 45.0%
!! GCCCGTCGTATTCTACTTTT+GGG - Chr3:69913183-69913202 None:intergenic 45.0%
!! GGCAACGGTTTTAATGCCAA+GGG - Chr3:69913699-69913718 None:intergenic 45.0%
!! TGGCAACGGTTTTAATGCCA+AGG - Chr3:69913700-69913719 None:intergenic 45.0%
!! TGTAGGCTTTGAAAGCTGCA+GGG + Chr3:69914097-69914116 MsG0380015420.01.T01:intron 45.0%
!! TGTTTGCTTTGGGGTCATTC+GGG - Chr3:69914170-69914189 None:intergenic 45.0%
!! TTGTAGGCTTTGAAAGCTGC+AGG + Chr3:69914096-69914115 MsG0380015420.01.T01:intron 45.0%
!!! CGACGTTTTTTCAGTAGCAG+TGG + Chr3:69913485-69913504 MsG0380015420.01.T01:intron 45.0%
!!! TTCCACTTTTTCCCAACCCT+TGG + Chr3:69913680-69913699 MsG0380015420.01.T01:intron 45.0%
!!! TTGTTTAATATTTTATTTTT+CGG + Chr3:69914673-69914692 MsG0380015420.01.T01:three_prime_UTR 5.0%
AAGCTCCGGAAGATGGGAAT+TGG - Chr3:69914406-69914425 None:intergenic 50.0%
AGTCCTCCTCTTTGCAGTGT+TGG - Chr3:69914298-69914317 None:intergenic 50.0%
CTACCAACACTGCAAAGAGG+AGG + Chr3:69914292-69914311 MsG0380015420.01.T01:CDS 50.0%
CTGCTACCAACACTGCAAAG+AGG + Chr3:69914289-69914308 MsG0380015420.01.T01:CDS 50.0%
CTTGGACTTGGACTTGGACT+TGG - Chr3:69914346-69914365 None:intergenic 50.0%
GCTGACCAATTCCCATCTTC+CGG + Chr3:69914398-69914417 MsG0380015420.01.T01:CDS 50.0%
GGATGCTTACCCCAATGTGA+TGG + Chr3:69913398-69913417 MsG0380015420.01.T01:CDS 50.0%
TCAAAAACAGCAAGGCCCTC+TGG - Chr3:69913372-69913391 None:intergenic 50.0%
TCCCTTGCAGTGAGCTAATC+AGG - Chr3:69914456-69914475 None:intergenic 50.0%
TGAAAGCTGCAGGGCAGATT+TGG + Chr3:69914106-69914125 MsG0380015420.01.T01:CDS 50.0%
TGCCAAGGGTTGGGAAAAAG+TGG - Chr3:69913685-69913704 None:intergenic 50.0%
! CTCCTGATTAGCTCACTGCA+AGG + Chr3:69914451-69914470 MsG0380015420.01.T01:three_prime_UTR 50.0%
!! CTCTTTGCAGTGTTGGTAGC+AGG - Chr3:69914291-69914310 None:intergenic 50.0%
!! GGTGTAAGCAAATGGTGGAC+TGG + Chr3:69914596-69914615 MsG0380015420.01.T01:three_prime_UTR 50.0%
CGGGCAACGGTTCTCTTACA+AGG + Chr3:69913198-69913217 MsG0380015420.01.T01:CDS 55.0%
TCCTCACTAGCACTGCAAGC+AGG + Chr3:69914908-69914927 MsG0380015420.01.T01:three_prime_UTR 55.0%
GCCTGCTTGCAGTGCTAGTG+AGG - Chr3:69914912-69914931 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 69912901 69915075 69912901 ID=MsG0380015420.01;Name=MsG0380015420.01
Chr3 mRNA 69912901 69915075 69912901 ID=MsG0380015420.01.T01;Parent=MsG0380015420.01;Name=MsG0380015420.01.T01;_AED=0.42;_eAED=0.44;_QI=0|0.66|0.75|1|0.66|0.75|4|632|215
Chr3 exon 69912901 69912957 69912901 ID=MsG0380015420.01.T01:exon:370;Parent=MsG0380015420.01.T01
Chr3 exon 69913088 69913219 69913088 ID=MsG0380015420.01.T01:exon:371;Parent=MsG0380015420.01.T01
Chr3 exon 69913315 69913431 69913315 ID=MsG0380015420.01.T01:exon:372;Parent=MsG0380015420.01.T01
Chr3 exon 69914102 69915075 69914102 ID=MsG0380015420.01.T01:exon:373;Parent=MsG0380015420.01.T01
Chr3 CDS 69912901 69912957 69912901 ID=MsG0380015420.01.T01:cds;Parent=MsG0380015420.01.T01
Chr3 CDS 69913088 69913219 69913088 ID=MsG0380015420.01.T01:cds;Parent=MsG0380015420.01.T01
Chr3 CDS 69913315 69913431 69913315 ID=MsG0380015420.01.T01:cds;Parent=MsG0380015420.01.T01
Chr3 CDS 69914102 69914443 69914102 ID=MsG0380015420.01.T01:cds;Parent=MsG0380015420.01.T01
Chr3 three_prime_UTR 69914444 69915075 69914444 ID=MsG0380015420.01.T01:three_prime_utr;Parent=MsG0380015420.01.T01
Gene Sequence

>MsG0380015420.01.T01

ATGCTTTACTTGCAGTCATCTTCCAAGATATTTTGGAGTTTGATGGATGTTATGTTGACACGACAAGCTTTTACACCAGAGCAAATAAATGAAGCATGCTATGTTGATATGAGGGCTAACAAAGATGTTTTTGAGAGTCTGAGGAAAAACCCAAAAGTAGAATACGACGGGCAACGGTTCTCTTACAAGGCAAAGTATGGTCTTAAGGAGAAAAGCGAGCTTCTTCAACTTATACGTAGGTATCCAGAGGGCCTTGCTGTTTTTGACCTAAAGGATGCTTACCCCAATGTGATGGAAGACTTGCAGGCTTTGAAAGCTGCAGGGCAGATTTGGCTGCTGTCCAACTTTGATTCACAGGACGACATTGCATACCCGAATGACCCCAAAGCAAACATTAAGGTGGATGATGACCTAAAGCAGCTGTTTCGGAGTATTGAGTTACCTCGTGATATGATTGATATAGAGAAGGATCTTCAAAAGAATGGAATGAAGCCTGCTACCAACACTGCAAAGAGGAGGACTGCAGCACAAATTGATGGCGTTTCTTCCAAGTCCAAGTCCAAGTCCAAGTCTAAGAAGAATGAAATCACCAAGAGAACCAAGCTGACCAATTCCCATCTTCCGGAGCTTTTTCAGAACCTAAAGTAA
Protein sequence

>MsG0380015420.01.T01

MLYLQSSSKIFWSLMDVMLTRQAFTPEQINEACYVDMRANKDVFESLRKNPKVEYDGQRFSYKAKYGLKEKSELLQLIRRYPEGLAVFDLKDAYPNVMEDLQALKAAGQIWLLSNFDSQDDIAYPNDPKANIKVDDDLKQLFRSIELPRDMIDIEKDLQKNGMKPATNTAKRRTAAQIDGVSSKSKSKSKSKKNEITKRTKLTNSHLPELFQNLK*