AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015836.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015836.01.T01 MTR_3g078490 97.393 422 11 0 69 490 113 534 0.0 845
MsG0380015836.01.T01 MTR_3g078550 91.686 421 35 0 69 489 53 473 0.0 774
MsG0380015836.01.T01 MTR_3g078550 91.686 421 35 0 69 489 83 503 0.0 773
MsG0380015836.01.T01 MTR_4g106510 81.710 421 77 0 69 489 83 503 0.0 702
MsG0380015836.01.T01 MTR_3g078490 96.911 259 8 0 69 327 83 341 0.0 512
MsG0380015836.01.T01 MTR_6g086300 42.857 413 226 5 71 480 96 501 3.99e-106 325
MsG0380015836.01.T01 MTR_6g086300 42.857 413 226 5 71 480 96 501 3.99e-106 325
MsG0380015836.01.T01 MTR_2g067660 41.584 404 231 2 68 471 116 514 9.25e-106 325
MsG0380015836.01.T01 MTR_6g086340 41.748 412 232 4 71 480 94 499 1.14e-103 319
MsG0380015836.01.T01 MTR_8g064170 40.436 413 236 5 71 480 135 540 3.66e-103 319
MsG0380015836.01.T01 MTR_8g083530 40.436 413 236 5 71 480 97 502 2.75e-101 313
MsG0380015836.01.T01 MTR_4g107040 41.487 417 233 6 68 480 134 543 2.88e-101 314
MsG0380015836.01.T01 MTR_3g078170 40.625 416 236 6 69 480 133 541 5.33e-98 306
MsG0380015836.01.T01 MTR_8g083520 38.592 412 212 5 71 480 8 380 3.06e-92 286
MsG0380015836.01.T01 MTR_8g083520 38.592 412 212 5 71 480 88 460 3.73e-91 285
MsG0380015836.01.T01 MTR_8g064170 38.015 413 214 6 71 480 135 508 1.18e-89 283
MsG0380015836.01.T01 MTR_3g078170 40.244 328 185 6 69 392 133 453 7.41e-72 235
MsG0380015836.01.T01 MTR_3g078170 40.453 309 173 6 69 373 133 434 3.32e-65 218
MsG0380015836.01.T01 MTR_3g078170 40.656 305 170 6 69 369 133 430 4.38e-65 217
MsG0380015836.01.T01 MTR_1690s0010 39.114 271 163 2 71 341 82 350 1.68e-58 197
MsG0380015836.01.T01 MTR_4g131180 38.166 338 195 8 123 456 142 469 5.23e-56 194
MsG0380015836.01.T01 MTR_8g083530 41.016 256 143 4 71 323 97 347 8.84e-55 188
MsG0380015836.01.T01 MTR_2g034160 32.877 365 229 7 130 485 181 538 4.85e-54 191
MsG0380015836.01.T01 MTR_1g014320 35.312 337 206 7 123 456 142 469 7.66e-54 189
MsG0380015836.01.T01 MTR_4g131180 38.170 317 183 7 123 436 142 448 5.59e-53 186
MsG0380015836.01.T01 MTR_2g042330 29.529 403 264 9 74 466 95 487 2.80e-46 168
MsG0380015836.01.T01 MTR_2g009750 30.905 398 260 8 87 477 103 492 2.24e-44 163
MsG0380015836.01.T01 MTR_2g009750 30.905 398 260 8 87 477 102 491 2.51e-44 163
MsG0380015836.01.T01 MTR_1399s0020 30.833 360 195 6 124 480 38 346 2.84e-44 159
MsG0380015836.01.T01 MTR_2g009750 30.827 399 260 8 87 477 103 493 3.44e-44 163
MsG0380015836.01.T01 MTR_4g093170 28.607 402 273 7 87 481 130 524 6.32e-43 160
MsG0380015836.01.T01 MTR_8g076480 30.049 406 270 9 71 471 42 438 1.27e-40 152
MsG0380015836.01.T01 MTR_3g088150 31.579 342 223 7 133 471 114 447 6.12e-40 150
MsG0380015836.01.T01 MTR_1g029840 31.105 344 222 8 133 471 112 445 7.47e-40 150
MsG0380015836.01.T01 MTR_1g029840 31.105 344 222 8 133 471 112 445 1.15e-39 150
MsG0380015836.01.T01 MTR_8g094600 30.994 342 225 7 133 471 165 498 1.25e-36 142
MsG0380015836.01.T01 MTR_2g097950 27.842 431 279 13 71 486 53 466 5.08e-35 137
MsG0380015836.01.T01 MTR_1222s0010 30.959 365 226 8 85 437 52 402 4.52e-33 133
MsG0380015836.01.T01 MTR_2g097950 26.464 427 255 12 71 486 53 431 4.32e-30 122
MsG0380015836.01.T01 MTR_1314s0010 31.214 346 224 6 137 473 1 341 6.12e-30 120
MsG0380015836.01.T01 MTR_4g065040 28.941 425 282 10 71 486 38 451 1.11e-29 122
MsG0380015836.01.T01 MTR_4g107940 25.658 304 194 10 130 415 187 476 4.35e-14 75.1
MsG0380015836.01.T01 MTR_4g107940 25.658 304 194 10 130 415 187 476 5.26e-14 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015836.01.T01 AT1G74920 75.656 419 102 0 69 487 78 496 0.0 690
MsG0380015836.01.T01 AT1G74920 75.656 419 102 0 69 487 83 501 0.0 690
MsG0380015836.01.T01 AT3G48170 74.584 421 107 0 69 489 83 503 0.0 678
MsG0380015836.01.T01 AT3G24503 44.903 412 220 4 71 480 94 500 1.71e-120 362
MsG0380015836.01.T01 AT3G48000 41.727 417 232 6 68 480 128 537 8.84e-105 323
MsG0380015836.01.T01 AT1G23800 40.334 419 239 6 66 480 122 533 1.61e-99 310
MsG0380015836.01.T01 AT1G79440 39.851 404 238 3 68 471 122 520 1.18e-94 296
MsG0380015836.01.T01 AT3G66658 34.540 359 219 8 131 480 182 533 5.52e-57 198
MsG0380015836.01.T01 AT3G66658 32.143 420 268 9 71 480 121 533 1.30e-56 198
MsG0380015836.01.T01 AT1G23800 41.221 262 145 5 66 323 122 378 3.41e-55 190
MsG0380015836.01.T01 AT2G24270 36.202 337 203 7 123 456 142 469 6.24e-55 191
MsG0380015836.01.T01 AT2G24270 36.202 337 203 7 123 456 142 469 6.24e-55 191
MsG0380015836.01.T01 AT2G24270 36.202 337 203 7 123 456 142 469 6.62e-55 192
MsG0380015836.01.T01 AT2G24270 36.202 337 203 7 123 456 182 509 1.25e-54 192
MsG0380015836.01.T01 AT1G54100 30.695 417 271 8 71 478 91 498 1.74e-49 177
MsG0380015836.01.T01 AT1G54100 30.695 417 271 8 71 478 91 498 1.74e-49 177
MsG0380015836.01.T01 AT1G44170 30.194 361 237 7 116 471 28 378 1.70e-41 154
MsG0380015836.01.T01 AT1G44170 30.194 361 237 7 116 471 91 441 5.28e-41 154
MsG0380015836.01.T01 AT1G44170 30.194 361 237 7 116 471 91 441 5.28e-41 154
MsG0380015836.01.T01 AT2G14170 29.017 417 277 8 71 480 77 481 1.11e-40 153
MsG0380015836.01.T01 AT2G14170 29.017 417 277 8 71 480 186 590 6.11e-40 152
MsG0380015836.01.T01 AT2G14170 30.055 366 249 4 71 434 186 546 6.81e-39 149
MsG0380015836.01.T01 AT4G36250 29.177 401 255 11 85 471 55 440 2.02e-36 140
MsG0380015836.01.T01 AT4G34240 28.363 342 234 6 133 471 29 362 3.19e-28 116
MsG0380015836.01.T01 AT4G34240 28.363 342 234 6 133 471 156 489 8.98e-28 117
MsG0380015836.01.T01 AT4G34240 28.363 342 234 6 133 471 171 504 1.01e-27 116
MsG0380015836.01.T01 AT4G34240 33.000 200 129 4 133 331 171 366 2.98e-16 80.9

Find 132 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATAATGACCTCCTCATTA+AGG 0.219659 3:-75751582 MsG0380015836.01.T01:CDS
TTAAATATTGTCACTGGATT+AGG 0.235962 3:-75750136 MsG0380015836.01.T01:CDS
ATTATCTAGGGCGGTGTTAT+TGG 0.270755 3:-75750593 MsG0380015836.01.T01:intron
CTAAACTCTGGCATGGAATA+TGG 0.271148 3:-75747522 MsG0380015836.01.T01:three_prime_UTR
GGCATTAAACGTAGTGGTTT+TGG 0.273926 3:-75747781 MsG0380015836.01.T01:CDS
TTTCTGCAGGTTCTTCAATC+TGG 0.307088 3:-75747856 MsG0380015836.01.T01:intron
TGACTACCTCGATGCAAATT+TGG 0.321570 3:-75748201 MsG0380015836.01.T01:CDS
ATATTTCACAGCTATGGCTT+GGG 0.322049 3:-75748013 MsG0380015836.01.T01:intron
CCATGAAGCTGGCGCTTCTT+TGG 0.329631 3:-75750113 MsG0380015836.01.T01:CDS
ATTTGATAGATTTCCTTTAC+TGG 0.341689 3:-75749942 MsG0380015836.01.T01:intron
TGTGAGAAAGGAAAAGAAAA+AGG 0.342969 3:+75750779 None:intergenic
CCAAAGAAGCGCCAGCTTCA+TGG 0.354485 3:+75750113 None:intergenic
GCACAACCAGCAGCCAGAGC+TGG 0.367552 3:+75750327 None:intergenic
TTCCAAATTTAGGACTTGTT+TGG 0.368861 3:-75750203 MsG0380015836.01.T01:intron
TTTACTGGTAGCTCTGCAAC+TGG 0.370902 3:-75749927 MsG0380015836.01.T01:CDS
ACCCCTTGGAAGAAGGTTGC+AGG 0.377207 3:-75749073 MsG0380015836.01.T01:CDS
ACCTGTGCTTCACTGACAAT+AGG 0.380793 3:+75749044 None:intergenic
ATCTCATCCTGATGTAGATA+TGG 0.386512 3:-75750089 MsG0380015836.01.T01:intron
AGTTATTATAATCTTATGTT+GGG 0.394667 3:-75747480 MsG0380015836.01.T01:three_prime_UTR
AATATTGAAGCCGTCTGAAT+TGG 0.395523 3:-75750301 MsG0380015836.01.T01:CDS
TTGTGAATAGACTTGTGAAA+TGG 0.395872 3:-75749118 MsG0380015836.01.T01:CDS
AAGATGCGAGCGCCTATCTA+AGG 0.397430 3:-75747963 MsG0380015836.01.T01:intron
TTCTTCAATCTGGAATTGTA+TGG 0.398500 3:-75747846 MsG0380015836.01.T01:CDS
GTTGCTGAATGGACCATCTA+TGG 0.408946 3:-75749431 MsG0380015836.01.T01:CDS
TTAAACTTACATGCACAATA+AGG 0.409766 3:+75749366 None:intergenic
TGAGGATGTTGACCTTGATA+AGG 0.409876 3:-75749683 MsG0380015836.01.T01:CDS
ATTAATGCAACAACACCAAT+AGG 0.410007 3:+75750467 None:intergenic
GGATTAGTCTCACCTTAGAT+AGG 0.410819 3:+75747951 None:intergenic
TTTAGGACTTGTTTGGAGTT+AGG 0.415116 3:-75750196 MsG0380015836.01.T01:intron
TATGGCTGCTTCTATACTAA+TGG 0.415426 3:-75749413 MsG0380015836.01.T01:CDS
ATTCTGTTATAACAGAGATA+TGG 0.423370 3:+75747443 None:intergenic
ATCATTAAACAGTTGCTGAA+TGG 0.424845 3:-75749442 MsG0380015836.01.T01:intron
TTGCATCCCTCATCCTCGTT+TGG 0.425992 3:-75751717 MsG0380015836.01.T01:CDS
TTCTCAGTTATCTGTGAGAA+AGG 0.426630 3:+75750767 None:intergenic
GTCACATCTGTTATGATGGT+TGG 0.427065 3:+75748220 None:intergenic
ATCAACTCACTGGGTGTCAT+TGG 0.429178 3:+75748108 None:intergenic
GTTAACTACGACATCTTTGA+AGG 0.434506 3:+75747572 None:intergenic
TGCTCCTATATCTCTTCCTA+TGG 0.434811 3:-75750519 MsG0380015836.01.T01:CDS
TTGGAAGAAGGTTGCAGGCT+AGG 0.437190 3:-75749068 MsG0380015836.01.T01:CDS
GATATTTCACAGCTATGGCT+TGG 0.445240 3:-75748014 MsG0380015836.01.T01:intron
TGGATCAATTGTGCTCAAAC+AGG 0.445550 3:-75747826 MsG0380015836.01.T01:CDS
AAGTTATTATAATCTTATGT+TGG 0.449400 3:-75747481 MsG0380015836.01.T01:three_prime_UTR
AATAATGACCTCCTCATTAA+GGG 0.452805 3:-75751581 MsG0380015836.01.T01:CDS
GGTGTCTTAAATATTGTCAC+TGG 0.453326 3:-75750142 MsG0380015836.01.T01:CDS
AAGGAAAATTGCTCCAGCTC+TGG 0.456691 3:-75750340 MsG0380015836.01.T01:CDS
ATTTCTGACCCCTTGGAAGA+AGG 0.465007 3:-75749080 MsG0380015836.01.T01:CDS
GTATCCATAGGAAGAGATAT+AGG 0.466773 3:+75750515 None:intergenic
ATTGCTCCAGCTCTGGCTGC+TGG 0.470070 3:-75750333 MsG0380015836.01.T01:CDS
GAGGATGTTGACCTTGATAA+GGG 0.470972 3:-75749682 MsG0380015836.01.T01:intron
AGAGAAGTTGGCCTTCCTTC+CGG 0.471083 3:-75750163 MsG0380015836.01.T01:CDS
AGGCTTCATTCGAGCTCCAT+GGG 0.473123 3:-75747806 MsG0380015836.01.T01:CDS
AGTATAGAAGCAGCCATAGA+TGG 0.473389 3:+75749418 None:intergenic
TAGCCTGCAACCTTCTTCCA+AGG 0.480512 3:+75749070 None:intergenic
CCCTATTGTCAGTGAAGCAC+AGG 0.482906 3:-75749045 MsG0380015836.01.T01:intron
CATCAAAATTTCTGACCCCT+TGG 0.485133 3:-75749087 MsG0380015836.01.T01:CDS
CCTGTGCTTCACTGACAATA+GGG 0.485460 3:+75749045 None:intergenic
TGTGAATAGACTTGTGAAAT+GGG 0.492497 3:-75749117 MsG0380015836.01.T01:CDS
TGCTGGACTTGCTGAAGGGT+TGG 0.492687 3:-75750555 MsG0380015836.01.T01:CDS
AGTTGCAGAGCTACCAGTAA+AGG 0.496448 3:+75749929 None:intergenic
CTCTGGCATGGAATATGGTT+TGG 0.502582 3:-75747517 MsG0380015836.01.T01:three_prime_UTR
TCGATGGCAGAATTTAAAGA+AGG 0.503397 3:-75748257 MsG0380015836.01.T01:intron
AAAACCACTGGATGAAGCAC+TGG 0.505361 3:-75750705 MsG0380015836.01.T01:CDS
CTGCCTATCTGATGCGTAGT+GGG 0.506336 3:-75751748 None:intergenic
CAGACAGTCGATGACTTTCG+TGG 0.508335 3:+75751691 None:intergenic
TTTCGAACCATATCTACATC+AGG 0.510557 3:+75750082 None:intergenic
CAGGCTTCATTCGAGCTCCA+TGG 0.514282 3:-75747807 MsG0380015836.01.T01:CDS
TATGTTCTCAAGGAGCCTAT+TGG 0.514657 3:-75750482 MsG0380015836.01.T01:CDS
TAGGAACTATCCTCTCTCAA+TGG 0.514791 3:-75750367 MsG0380015836.01.T01:CDS
GCATGGAATATGGTTTGGTG+TGG 0.514909 3:-75747512 MsG0380015836.01.T01:three_prime_UTR
GTGGTGTCCAAACGAGGATG+AGG 0.519225 3:+75751710 None:intergenic
AACATAAGATTATAATAACT+TGG 0.519839 3:+75747483 None:intergenic
GTACATATCTGATGAGCAGT+GGG 0.523721 3:-75747609 MsG0380015836.01.T01:CDS
AAGTCTATTCACAAATTCTA+CGG 0.524261 3:+75749127 None:intergenic
TGAGTGTGAAGCAAGTTACT+AGG 0.525857 3:-75747631 MsG0380015836.01.T01:CDS
TTGGTCGCGAATTAGGAGAA+TGG 0.527821 3:-75747762 MsG0380015836.01.T01:intron
AGCCTGCAACCTTCTTCCAA+GGG 0.527999 3:+75749071 None:intergenic
GGCGAAATATGCAGAGAAGT+TGG 0.528758 3:-75750175 MsG0380015836.01.T01:CDS
CTTCAAAAGCTATGTTCTCA+AGG 0.533468 3:-75750492 MsG0380015836.01.T01:CDS
GGTAGTCACATCTGTTATGA+TGG 0.533599 3:+75748216 None:intergenic
TATTTCACAGCTATGGCTTG+GGG 0.535756 3:-75748012 MsG0380015836.01.T01:intron
AGGCAAACCAACCCTTATCA+AGG 0.536726 3:+75749671 None:intergenic
AGCTGCAGCACAACTAATCA+AGG 0.537292 3:-75749889 MsG0380015836.01.T01:intron
CTGTCTCAACATGGAGAATG+AGG 0.537872 3:+75751654 None:intergenic
TATCTGATGAGCAGTGGGGC+TGG 0.538103 3:-75747604 MsG0380015836.01.T01:CDS
CGATGGCAGAATTTAAAGAA+GGG 0.538375 3:-75748256 MsG0380015836.01.T01:intron
TTGACATCTAAACTCTGGCA+TGG 0.540317 3:-75747529 MsG0380015836.01.T01:three_prime_UTR
TTGTTGCATTAATTACTCCA+TGG 0.543900 3:-75750457 MsG0380015836.01.T01:intron
TACTATGCTGGACTTGCTGA+AGG 0.544071 3:-75750560 MsG0380015836.01.T01:CDS
AAACTTGAATCAATTGATTG+TGG 0.547623 3:-75750728 MsG0380015836.01.T01:CDS
ATGACCTCCTCATTAAGGGC+TGG 0.553150 3:-75751577 MsG0380015836.01.T01:intron
AATTGATTGTGGAAAACCAC+TGG 0.554464 3:-75750717 MsG0380015836.01.T01:CDS
CACCGCACCAGCCCTTAATG+AGG 0.559828 3:+75751570 None:intergenic
ACTGGATTAGGCCATGAAGC+TGG 0.561019 3:-75750124 MsG0380015836.01.T01:CDS
ATCTCAACGGCTAAGAGTGA+AGG 0.561409 3:-75748387 MsG0380015836.01.T01:CDS
ATCCTCTCTCAATGGCGGCA+AGG 0.570320 3:-75750359 MsG0380015836.01.T01:CDS
CATGGAATATGGTTTGGTGT+GGG 0.570781 3:-75747511 MsG0380015836.01.T01:three_prime_UTR
TATTTAAGACACCGGAAGGA+AGG 0.571761 3:+75750152 None:intergenic
CTATCTGATGCGTAGTGGGT+GGG 0.572401 3:-75751744 None:intergenic
TTCCTTGCCGCCATTGAGAG+AGG 0.573066 3:+75750357 None:intergenic
TAAATTTGACATCTAAACTC+TGG 0.574840 3:-75747534 MsG0380015836.01.T01:three_prime_UTR
TGATACTCAGTGTGGAGGGA+TGG 0.575925 3:-75751624 MsG0380015836.01.T01:CDS
AAACCACTGGATGAAGCACT+GGG 0.579432 3:-75750704 MsG0380015836.01.T01:CDS
CCTATCTGATGCGTAGTGGG+TGG 0.583187 3:-75751745 None:intergenic
GATGCAAATTTGGAGAGAAG+AGG 0.583417 3:-75748191 MsG0380015836.01.T01:CDS
CATACGAGACTGTCTCAACA+TGG 0.594457 3:+75751645 None:intergenic
TAACTACGACATCTTTGAAG+GGG 0.595231 3:+75747574 None:intergenic
TTAACTACGACATCTTTGAA+GGG 0.596180 3:+75747573 None:intergenic
CGTATGATACTCAGTGTGGA+GGG 0.601728 3:-75751628 MsG0380015836.01.T01:CDS
TTCATTCGAGCTCCATGGGG+AGG 0.606577 3:-75747802 MsG0380015836.01.T01:CDS
TCTGCCTATCTGATGCGTAG+TGG 0.609643 3:-75751749 None:intergenic
ACAATATTTAAGACACCGGA+AGG 0.610299 3:+75750148 None:intergenic
TTACTGGTAGCTCTGCAACT+GGG 0.611165 3:-75749926 MsG0380015836.01.T01:CDS
TCGTATGATACTCAGTGTGG+AGG 0.612836 3:-75751629 MsG0380015836.01.T01:CDS
TACACAGATGCCAATTCAGA+CGG 0.614415 3:+75750291 None:intergenic
TGGTGTCCAAACGAGGATGA+GGG 0.618016 3:+75751711 None:intergenic
CTACGTTTAATGCCTCCCCA+TGG 0.624319 3:+75747790 None:intergenic
GGTACATATCTGATGAGCAG+TGG 0.625206 3:-75747610 MsG0380015836.01.T01:CDS
AACTGGTGGATGTCGACCAG+AGG 0.630389 3:-75748352 MsG0380015836.01.T01:intron
CGCACCAGCCCTTAATGAGG+AGG 0.633819 3:+75751573 None:intergenic
ACCACTGGATGAAGCACTGG+GGG 0.636518 3:-75750702 MsG0380015836.01.T01:CDS
TGGGGAGGCATTAAACGTAG+TGG 0.638861 3:-75747787 MsG0380015836.01.T01:CDS
AGTGACAATATTTAAGACAC+CGG 0.649982 3:+75750144 None:intergenic
GCCTGCAACCTTCTTCCAAG+GGG 0.657132 3:+75749072 None:intergenic
TTCTCTCCAAATTTGCATCG+AGG 0.657536 3:+75748195 None:intergenic
ACTATGCTGGACTTGCTGAA+GGG 0.667267 3:-75750559 MsG0380015836.01.T01:CDS
GAACTATCCTCTCTCAATGG+CGG 0.667430 3:-75750364 MsG0380015836.01.T01:CDS
ACTTTCGTGGTGTCCAAACG+AGG 0.667693 3:+75751704 None:intergenic
GGCTTCATTCGAGCTCCATG+GGG 0.715379 3:-75747805 MsG0380015836.01.T01:CDS
GTCTCGTATGATACTCAGTG+TGG 0.729429 3:-75751632 MsG0380015836.01.T01:CDS
TGTGAAAACATTTAGCACTG+AGG 0.731236 3:-75748149 MsG0380015836.01.T01:CDS
AACCACTGGATGAAGCACTG+GGG 0.731676 3:-75750703 MsG0380015836.01.T01:CDS
TACATATCTGATGAGCAGTG+GGG 0.756462 3:-75747608 MsG0380015836.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTAATTGTTTTTATATTTT+AGG - Chr3:75748746-75748765 MsG0380015836.01.T01:intron 10.0%
!!! GTTTTTATATGAAAATATAT+TGG + Chr3:75751205-75751224 None:intergenic 10.0%
!! AACATAAGATTATAATAACT+TGG + Chr3:75751652-75751671 None:intergenic 15.0%
!! AAGTTATTATAATCTTATGT+TGG - Chr3:75751651-75751670 MsG0380015836.01.T01:CDS 15.0%
!! AGTTATTATAATCTTATGTT+GGG - Chr3:75751652-75751671 MsG0380015836.01.T01:CDS 15.0%
!! TATAAAAACAATTACTGAAA+AGG + Chr3:75748742-75748761 None:intergenic 15.0%
!!! ATTATAGTTGAGTAAATTTT+TGG - Chr3:75749597-75749616 MsG0380015836.01.T01:intron 15.0%
!!! CAAATTATTTTTATCATTAG+TGG - Chr3:75749076-75749095 MsG0380015836.01.T01:CDS 15.0%
!!! TAAATTTCTGAAATCATATT+AGG - Chr3:75748192-75748211 MsG0380015836.01.T01:CDS 15.0%
!! AAATTTAAGTAGTCATGTTA+AGG + Chr3:75748284-75748303 None:intergenic 20.0%
!! ATTTGATATTGTTGTGAATT+CGG + Chr3:75749365-75749384 None:intergenic 20.0%
!! CAATGCATGAAATTAAAATA+TGG + Chr3:75749554-75749573 None:intergenic 20.0%
!! TATTTATGTGACCAAATTAT+GGG - Chr3:75748223-75748242 MsG0380015836.01.T01:CDS 20.0%
!! TTATTTATGTGACCAAATTA+TGG - Chr3:75748222-75748241 MsG0380015836.01.T01:CDS 20.0%
!!! AGTATTGAATTTTATCTCAA+CGG - Chr3:75750732-75750751 MsG0380015836.01.T01:CDS 20.0%
!!! CTAATTTTTTCAGCATAAAT+GGG - Chr3:75749864-75749883 MsG0380015836.01.T01:intron 20.0%
!!! TATTTTAATTTCATGCATTG+TGG - Chr3:75749554-75749573 MsG0380015836.01.T01:intron 20.0%
!!! TCTAATTTTTTCAGCATAAA+TGG - Chr3:75749863-75749882 MsG0380015836.01.T01:intron 20.0%
!!! TTCAATTTCATGGATTATTT+TGG + Chr3:75748091-75748110 None:intergenic 20.0%
!!! TTCTTTTTGTTTCCAAATTT+AGG - Chr3:75748919-75748938 MsG0380015836.01.T01:intron 20.0%
!!! TTGTAGATTTTAGAAAACAA+GGG + Chr3:75751401-75751420 None:intergenic 20.0%
!!! TTTGTAGATTTTAGAAAACA+AGG + Chr3:75751402-75751421 None:intergenic 20.0%
! AAAAAACAGATATCATACCA+TGG + Chr3:75748695-75748714 None:intergenic 25.0%
! AAACTTGAATCAATTGATTG+TGG - Chr3:75748404-75748423 MsG0380015836.01.T01:CDS 25.0%
! AAATACAACAAATGTAGTCA+GGG - Chr3:75747707-75747726 MsG0380015836.01.T01:intron 25.0%
! AAATTGTAGCTTAGACAATT+TGG - Chr3:75748046-75748065 MsG0380015836.01.T01:intron 25.0%
! AACATGTATTATTGATGGAA+TGG + Chr3:75749810-75749829 None:intergenic 25.0%
! AAGTCTATTCACAAATTCTA+CGG + Chr3:75750008-75750027 None:intergenic 25.0%
! AATAAAACATCAACCGTATA+TGG + Chr3:75749658-75749677 None:intergenic 25.0%
! ACTCAACTATAATGTATGAT+GGG + Chr3:75749590-75749609 None:intergenic 25.0%
! AGCTACAATTTCAAAAACTA+AGG + Chr3:75748037-75748056 None:intergenic 25.0%
! ATAAAACATCAACCGTATAT+GGG + Chr3:75749657-75749676 None:intergenic 25.0%
! ATTCTGTTATAACAGAGATA+TGG + Chr3:75751692-75751711 None:intergenic 25.0%
! ATTTGATAGATTTCCTTTAC+TGG - Chr3:75749190-75749209 MsG0380015836.01.T01:intron 25.0%
! GCATAAACATGTATTATTGA+TGG + Chr3:75749815-75749834 None:intergenic 25.0%
! TAAATTTGACATCTAAACTC+TGG - Chr3:75751598-75751617 MsG0380015836.01.T01:CDS 25.0%
! TAATATGTCTTCAAATTCGA+TGG - Chr3:75750859-75750878 MsG0380015836.01.T01:intron 25.0%
! TACTCAACTATAATGTATGA+TGG + Chr3:75749591-75749610 None:intergenic 25.0%
! TTAAACTTACATGCACAATA+AGG + Chr3:75749769-75749788 None:intergenic 25.0%
! TTAAATATTGTCACTGGATT+AGG - Chr3:75748996-75749015 MsG0380015836.01.T01:intron 25.0%
! TTAGTGGAATCAAAACTATA+AGG - Chr3:75749092-75749111 MsG0380015836.01.T01:CDS 25.0%
! TTCGATTATTACTAACTGAA+TGG - Chr3:75751235-75751254 MsG0380015836.01.T01:intron 25.0%
! TTGTCCAAAATGTAAACATA+CGG - Chr3:75750378-75750397 MsG0380015836.01.T01:intron 25.0%
!! AATATTTTCGTTCATGCAAT+AGG + Chr3:75749632-75749651 None:intergenic 25.0%
!! AATTTGTAGCTTAATTTGAG+AGG + Chr3:75747989-75748008 None:intergenic 25.0%
!! CGAAAATATTTTCCCATATA+CGG - Chr3:75749642-75749661 MsG0380015836.01.T01:intron 25.0%
!! GATCAAGTAAAACACTTTTA+TGG - Chr3:75749966-75749985 MsG0380015836.01.T01:intron 25.0%
!! TAAAACACTTTTATGGTTTC+AGG - Chr3:75749973-75749992 MsG0380015836.01.T01:intron 25.0%
!! TATGTTTACATTTTGGACAA+TGG + Chr3:75750378-75750397 None:intergenic 25.0%
!!! AATTTTTTATCCAAAGCCAA+CGG + Chr3:75749946-75749965 None:intergenic 25.0%
!!! ACTTTATATTTGTTTTCTGC+AGG - Chr3:75751263-75751282 MsG0380015836.01.T01:intron 25.0%
!!! ATTTTAGCAAACTCAAAAGA+TGG + Chr3:75749150-75749169 None:intergenic 25.0%
!!! GTAGCTTTAGACATAATTTT+AGG - Chr3:75750140-75750159 MsG0380015836.01.T01:CDS 25.0%
!!! GTCAGAAATTTTGATGTTTT+TGG + Chr3:75750041-75750060 None:intergenic 25.0%
!!! TATTGTTGTTTTTCCATTCA+GGG - Chr3:75751463-75751482 MsG0380015836.01.T01:intron 25.0%
!!! TTATTGTTGTTTTTCCATTC+AGG - Chr3:75751462-75751481 MsG0380015836.01.T01:intron 25.0%
AAATTCAGACTCTAATTCTC+AGG + Chr3:75751442-75751461 None:intergenic 30.0%
AACAAACACAAGACAAATAC+AGG + Chr3:75750345-75750364 None:intergenic 30.0%
AACTTGATATTTCACAGCTA+TGG - Chr3:75751113-75751132 MsG0380015836.01.T01:intron 30.0%
AATAATGACCTCCTCATTAA+GGG - Chr3:75747551-75747570 MsG0380015836.01.T01:three_prime_UTR 30.0%
ACATCCTCAAAAACAACTAT+TGG + Chr3:75749438-75749457 None:intergenic 30.0%
ACATGCGAAACAAATAACAA+TGG + Chr3:75749317-75749336 None:intergenic 30.0%
ACATTTCTACTTGCAAAAAG+AGG - Chr3:75750240-75750259 MsG0380015836.01.T01:intron 30.0%
ACTGAGAAAAAGAATGAACT+AGG - Chr3:75748380-75748399 MsG0380015836.01.T01:CDS 30.0%
AGGAAAAGAAAAAGGATAAC+TGG + Chr3:75748348-75748367 None:intergenic 30.0%
ATCATTAAACAGTTGCTGAA+TGG - Chr3:75749690-75749709 MsG0380015836.01.T01:CDS 30.0%
ATTAATGCAACAACACCAAT+AGG + Chr3:75748668-75748687 None:intergenic 30.0%
ATTCAGCAACTGTTTAATGA+TGG + Chr3:75749691-75749710 None:intergenic 30.0%
CAAACTAGACATATTTGAGA+AGG + Chr3:75749484-75749503 None:intergenic 30.0%
CAAATACAACAAATGTAGTC+AGG - Chr3:75747706-75747725 MsG0380015836.01.T01:intron 30.0%
CATCCTCAAAAACAACTATT+GGG + Chr3:75749437-75749456 None:intergenic 30.0%
CATTTCTACTTGCAAAAAGA+GGG - Chr3:75750241-75750260 MsG0380015836.01.T01:intron 30.0%
CCAATTTAGTCCTAAATTGT+AGG + Chr3:75748252-75748271 None:intergenic 30.0%
TCTCTCATGTCAATTTAAGT+GGG - Chr3:75750563-75750582 MsG0380015836.01.T01:CDS 30.0%
TGTGAATAGACTTGTGAAAT+GGG - Chr3:75750015-75750034 MsG0380015836.01.T01:intron 30.0%
TGTGAGAAAGGAAAAGAAAA+AGG + Chr3:75748356-75748375 None:intergenic 30.0%
TGTTAGATTTCCTTACATTG+TGG - Chr3:75749889-75749908 MsG0380015836.01.T01:intron 30.0%
TTAACTACGACATCTTTGAA+GGG + Chr3:75751562-75751581 None:intergenic 30.0%
TTGTGAATAGACTTGTGAAA+TGG - Chr3:75750014-75750033 MsG0380015836.01.T01:intron 30.0%
TTGTTGCATTAATTACTCCA+TGG - Chr3:75748675-75748694 MsG0380015836.01.T01:intron 30.0%
! AAATAAAGCAGTTGATTTCC+CGG + Chr3:75750197-75750216 None:intergenic 30.0%
! ACTACCGTATGTTTACATTT+TGG + Chr3:75750385-75750404 None:intergenic 30.0%
! AGTGACAATATTTAAGACAC+CGG + Chr3:75748991-75749010 None:intergenic 30.0%
! ATCACTTATCGTTTGCATTT+TGG - Chr3:75749508-75749527 MsG0380015836.01.T01:intron 30.0%
! CCTACAATTTAGGACTAAAT+TGG - Chr3:75748249-75748268 MsG0380015836.01.T01:CDS 30.0%
! GTTCAGGATTTTCAATTTCA+TGG + Chr3:75748101-75748120 None:intergenic 30.0%
! TCTCAAATATGTCTAGTTTG+TGG - Chr3:75749484-75749503 MsG0380015836.01.T01:intron 30.0%
! TGTGGTTTGATGATTATCTA+GGG - Chr3:75748527-75748546 MsG0380015836.01.T01:intron 30.0%
! TTCCAAATTTAGGACTTGTT+TGG - Chr3:75748929-75748948 MsG0380015836.01.T01:intron 30.0%
! TTCTTCAATCTGGAATTGTA+TGG - Chr3:75751286-75751305 MsG0380015836.01.T01:intron 30.0%
! TTGTGGTTTGATGATTATCT+AGG - Chr3:75748526-75748545 MsG0380015836.01.T01:intron 30.0%
! TTTTCTCCAAAGAACTAATG+TGG + Chr3:75748123-75748142 None:intergenic 30.0%
!! ACATGATTTAGCTTTCTATC+TGG - Chr3:75750609-75750628 MsG0380015836.01.T01:intron 30.0%
!! ACTACATTTGTTGTATTTGG+TGG + Chr3:75747705-75747724 None:intergenic 30.0%
!! ATTTAGCTTTCAACCCATTT+GGG - Chr3:75750475-75750494 MsG0380015836.01.T01:CDS 30.0%
!! CATGATTTAGCTTTCTATCT+GGG - Chr3:75750610-75750629 MsG0380015836.01.T01:intron 30.0%
!! CTGACTACATTTGTTGTATT+TGG + Chr3:75747708-75747727 None:intergenic 30.0%
!!! ATGACAGTGTTGTTTTGATA+GGG + Chr3:75747924-75747943 None:intergenic 30.0%
!!! ATTGTTGTTTTTCCATTCAG+GGG - Chr3:75751464-75751483 MsG0380015836.01.T01:intron 30.0%
!!! GTTCCTTTTTTTGCTTACTT+GGG - Chr3:75748498-75748517 MsG0380015836.01.T01:intron 30.0%
!!! TGTTCCTTTTTTTGCTTACT+TGG - Chr3:75748497-75748516 MsG0380015836.01.T01:intron 30.0%
AAAACAGATACACATGCTCA+AGG + Chr3:75750819-75750838 None:intergenic 35.0%
AAACAGATACACATGCTCAA+GGG + Chr3:75750818-75750837 None:intergenic 35.0%
AAGAAAAAGGATAACTGGTC+AGG + Chr3:75748343-75748362 None:intergenic 35.0%
AATATTGAAGCCGTCTGAAT+TGG - Chr3:75748831-75748850 MsG0380015836.01.T01:intron 35.0%
AATTGATTGTGGAAAACCAC+TGG - Chr3:75748415-75748434 MsG0380015836.01.T01:intron 35.0%
ATATTTCACAGCTATGGCTT+GGG - Chr3:75751119-75751138 MsG0380015836.01.T01:intron 35.0%
ATCTCATCCTGATGTAGATA+TGG - Chr3:75749043-75749062 MsG0380015836.01.T01:intron 35.0%
ATTATCTTGATCTTGCATCG+GGG + Chr3:75747652-75747671 None:intergenic 35.0%
ATTGTAGGCATCCCATAATT+TGG + Chr3:75748237-75748256 None:intergenic 35.0%
CAATAATGACCTCCTCATTA+AGG - Chr3:75747550-75747569 MsG0380015836.01.T01:three_prime_UTR 35.0%
CATTATCTTGATCTTGCATC+GGG + Chr3:75747653-75747672 None:intergenic 35.0%
CCATTATCTTGATCTTGCAT+CGG + Chr3:75747654-75747673 None:intergenic 35.0%
CGATGCAAGATCAAGATAAT+GGG - Chr3:75747652-75747671 MsG0380015836.01.T01:intron 35.0%
CGATGGCAGAATTTAAAGAA+GGG - Chr3:75750876-75750895 MsG0380015836.01.T01:intron 35.0%
CTCCAAACAAGTCCTAAATT+TGG + Chr3:75748934-75748953 None:intergenic 35.0%
CTCTCTCATGTCAATTTAAG+TGG - Chr3:75750562-75750581 MsG0380015836.01.T01:CDS 35.0%
CTTCAAAAGCTATGTTCTCA+AGG - Chr3:75748640-75748659 MsG0380015836.01.T01:intron 35.0%
CTTGTAAGTAAAGAGCTTGA+TGG - Chr3:75747679-75747698 MsG0380015836.01.T01:intron 35.0%
GATAATCATCAAACCACAAC+AGG + Chr3:75748525-75748544 None:intergenic 35.0%
GGTGTCTTAAATATTGTCAC+TGG - Chr3:75748990-75749009 MsG0380015836.01.T01:intron 35.0%
GTATCCATAGGAAGAGATAT+AGG + Chr3:75748620-75748639 None:intergenic 35.0%
GTTAACTACGACATCTTTGA+AGG + Chr3:75751563-75751582 None:intergenic 35.0%
TAATTATCAAGTCCCCTGAA+TGG + Chr3:75751479-75751498 None:intergenic 35.0%
TATGGCTGCTTCTATACTAA+TGG - Chr3:75749719-75749738 MsG0380015836.01.T01:CDS 35.0%
TCATCTTCCTAATCGAAAGA+TGG - Chr3:75747940-75747959 MsG0380015836.01.T01:intron 35.0%
TCCACAAGTCAAGAAAAAAC+TGG + Chr3:75751076-75751095 None:intergenic 35.0%
TCGATGGCAGAATTTAAAGA+AGG - Chr3:75750875-75750894 MsG0380015836.01.T01:intron 35.0%
TGAGTTTCCATCTTTCGATT+AGG + Chr3:75747950-75747969 None:intergenic 35.0%
TGTGAAAACATTTAGCACTG+AGG - Chr3:75750983-75751002 MsG0380015836.01.T01:intron 35.0%
TTATGGGATGCCTACAATTT+AGG - Chr3:75748239-75748258 MsG0380015836.01.T01:CDS 35.0%
TTCTCAGTTATCTGTGAGAA+AGG + Chr3:75748368-75748387 None:intergenic 35.0%
TTTCCCGGATTATGTATCAA+CGG + Chr3:75750182-75750201 None:intergenic 35.0%
TTTCGAACCATATCTACATC+AGG + Chr3:75749053-75749072 None:intergenic 35.0%
TTTGCCGTTGATACATAATC+CGG - Chr3:75750175-75750194 MsG0380015836.01.T01:CDS 35.0%
! ACAATATTTAAGACACCGGA+AGG + Chr3:75748987-75749006 None:intergenic 35.0%
! ATTTGGAGAGAAGAGGTTTT+TGG - Chr3:75750948-75750967 MsG0380015836.01.T01:intron 35.0%
! CTTGAGAACATAGCTTTTGA+AGG + Chr3:75748642-75748661 None:intergenic 35.0%
! TAACTACGACATCTTTGAAG+GGG + Chr3:75751561-75751580 None:intergenic 35.0%
! TTCGTTCATGCAATAGGTTT+TGG + Chr3:75749626-75749645 None:intergenic 35.0%
! TTGTAGCTTAATTTGAGAGG+TGG + Chr3:75747986-75748005 None:intergenic 35.0%
! TTTAGGACTTGTTTGGAGTT+AGG - Chr3:75748936-75748955 MsG0380015836.01.T01:intron 35.0%
!! AATGTTTTCACAGAGAGTAC+AGG + Chr3:75750975-75750994 None:intergenic 35.0%
!! CATGTTAGCAGTTGATTTTC+CGG + Chr3:75750317-75750336 None:intergenic 35.0%
!! GAAGGTGCAACAATTTTAAC+TGG - Chr3:75750763-75750782 MsG0380015836.01.T01:CDS 35.0%
!! GATTTAGCTTTCAACCCATT+TGG - Chr3:75750474-75750493 MsG0380015836.01.T01:CDS 35.0%
!! GTACATTGTCTGGTTCTATA+CGG + Chr3:75747630-75747649 None:intergenic 35.0%
!!! ACCAGTTTTTTCTTGACTTG+TGG - Chr3:75751072-75751091 MsG0380015836.01.T01:intron 35.0%
!!! GATGACAGTGTTGTTTTGAT+AGG + Chr3:75747925-75747944 None:intergenic 35.0%
!!! TAGCTTTTGAAGGTATCCAT+AGG + Chr3:75748632-75748651 None:intergenic 35.0%
AGGGTATATACTCATACCTC+TGG + Chr3:75750799-75750818 None:intergenic 40.0%
AGTATAGAAGCAGCCATAGA+TGG + Chr3:75749717-75749736 None:intergenic 40.0%
ATGTTGACCTTGATAAGGGT+TGG - Chr3:75749454-75749473 MsG0380015836.01.T01:intron 40.0%
CAAAACTCTGCCACAATGTA+AGG + Chr3:75749902-75749921 None:intergenic 40.0%
CATCAAAATTTCTGACCCCT+TGG - Chr3:75750045-75750064 MsG0380015836.01.T01:intron 40.0%
CCAAAGAACTAATGTGGTTC+AGG + Chr3:75748117-75748136 None:intergenic 40.0%
CCGATGCAAGATCAAGATAA+TGG - Chr3:75747651-75747670 MsG0380015836.01.T01:CDS 40.0%
CGGAAAATCAACTGCTAACA+TGG - Chr3:75750315-75750334 MsG0380015836.01.T01:CDS 40.0%
CTAAACTCTGGCATGGAATA+TGG - Chr3:75751610-75751629 MsG0380015836.01.T01:CDS 40.0%
GAGCTGATGGTTGAATTGAT+AGG + Chr3:75747899-75747918 None:intergenic 40.0%
GAGGATGTTGACCTTGATAA+GGG - Chr3:75749450-75749469 MsG0380015836.01.T01:intron 40.0%
GATATTTCACAGCTATGGCT+TGG - Chr3:75751118-75751137 MsG0380015836.01.T01:intron 40.0%
GATCAGTTCATCAACTCACT+GGG + Chr3:75751036-75751055 None:intergenic 40.0%
GATGCAAATTTGGAGAGAAG+AGG - Chr3:75750941-75750960 MsG0380015836.01.T01:intron 40.0%
GGTAGTCACATCTGTTATGA+TGG + Chr3:75750919-75750938 None:intergenic 40.0%
GGTCCCAAGTAAGCAAAAAA+AGG + Chr3:75748504-75748523 None:intergenic 40.0%
GTACATATCTGATGAGCAGT+GGG - Chr3:75751523-75751542 MsG0380015836.01.T01:intron 40.0%
GTCACATCTGTTATGATGGT+TGG + Chr3:75750915-75750934 None:intergenic 40.0%
TACACAGATGCCAATTCAGA+CGG + Chr3:75748844-75748863 None:intergenic 40.0%
TACATATCTGATGAGCAGTG+GGG - Chr3:75751524-75751543 MsG0380015836.01.T01:intron 40.0%
TAGGAACTATCCTCTCTCAA+TGG - Chr3:75748765-75748784 MsG0380015836.01.T01:intron 40.0%
TATAAGGTGGACCTCACAAA+CGG + Chr3:75747854-75747873 None:intergenic 40.0%
TATGTTCTCAAGGAGCCTAT+TGG - Chr3:75748650-75748669 MsG0380015836.01.T01:intron 40.0%
TATTTCACAGCTATGGCTTG+GGG - Chr3:75751120-75751139 MsG0380015836.01.T01:intron 40.0%
TCAAAGTCGAATGCATTCTG+CGG - Chr3:75750424-75750443 MsG0380015836.01.T01:intron 40.0%
TGACTACCTCGATGCAAATT+TGG - Chr3:75750931-75750950 MsG0380015836.01.T01:intron 40.0%
TGAGGATGTTGACCTTGATA+AGG - Chr3:75749449-75749468 MsG0380015836.01.T01:intron 40.0%
TGAGTGTGAAGCAAGTTACT+AGG - Chr3:75751501-75751520 MsG0380015836.01.T01:intron 40.0%
TGATCAGTTCATCAACTCAC+TGG + Chr3:75751037-75751056 None:intergenic 40.0%
TGCTCCTATATCTCTTCCTA+TGG - Chr3:75748613-75748632 MsG0380015836.01.T01:intron 40.0%
TGGATCAATTGTGCTCAAAC+AGG - Chr3:75751306-75751325 MsG0380015836.01.T01:intron 40.0%
TTCTCTCCAAATTTGCATCG+AGG + Chr3:75750940-75750959 None:intergenic 40.0%
TTGACATCTAAACTCTGGCA+TGG - Chr3:75751603-75751622 MsG0380015836.01.T01:CDS 40.0%
TTGCCGTTGATACATAATCC+GGG - Chr3:75750176-75750195 MsG0380015836.01.T01:CDS 40.0%
TTTCTGCAGGTTCTTCAATC+TGG - Chr3:75751276-75751295 MsG0380015836.01.T01:intron 40.0%
! CATCGATCACATGAGTCTTT+TGG + Chr3:75748168-75748187 None:intergenic 40.0%
! CCTGAACCACATTAGTTCTT+TGG - Chr3:75748114-75748133 MsG0380015836.01.T01:intron 40.0%
! GGCATTAAACGTAGTGGTTT+TGG - Chr3:75751351-75751370 MsG0380015836.01.T01:intron 40.0%
! GGTTTGATGATTATCTAGGG+CGG - Chr3:75748530-75748549 MsG0380015836.01.T01:intron 40.0%
! TATTTAAGACACCGGAAGGA+AGG + Chr3:75748983-75749002 None:intergenic 40.0%
! TTAATTTGAGAGGTGGCATG+AGG + Chr3:75747979-75747998 None:intergenic 40.0%
! TTTTGATAGGGTAGAGCTGA+TGG + Chr3:75747912-75747931 None:intergenic 40.0%
!! ATTATCTAGGGCGGTGTTAT+TGG - Chr3:75748539-75748558 MsG0380015836.01.T01:intron 40.0%
!! ATTGATAGGTACTGATCCGA+AGG + Chr3:75747885-75747904 None:intergenic 40.0%
!! CATGGAATATGGTTTGGTGT+GGG - Chr3:75751621-75751640 MsG0380015836.01.T01:CDS 40.0%
!! GGATTAGTCTCACCTTAGAT+AGG + Chr3:75751184-75751203 None:intergenic 40.0%
!!! GAGCCCAATAGTTGTTTTTG+AGG - Chr3:75749431-75749450 MsG0380015836.01.T01:CDS 40.0%
!!! GGTGCAACAATTTTAACTGG+TGG - Chr3:75750766-75750785 MsG0380015836.01.T01:CDS 40.0%
!!! GGTTGTTTTGAGTACTATGC+TGG - Chr3:75748560-75748579 MsG0380015836.01.T01:intron 40.0%
AAAACCACTGGATGAAGCAC+TGG - Chr3:75748427-75748446 MsG0380015836.01.T01:intron 45.0%
AAGGAAAATTGCTCCAGCTC+TGG - Chr3:75748792-75748811 MsG0380015836.01.T01:intron 45.0%
ACCTGTGCTTCACTGACAAT+AGG + Chr3:75750091-75750110 None:intergenic 45.0%
ACCTTATAGTCAGCCTCCTT+CGG - Chr3:75747866-75747885 MsG0380015836.01.T01:intron 45.0%
AGCTGCAGCACAACTAATCA+AGG - Chr3:75749243-75749262 MsG0380015836.01.T01:intron 45.0%
AGCTTTCAACCCATTTGGGT+TGG - Chr3:75750479-75750498 MsG0380015836.01.T01:CDS 45.0%
AGGCAAACCAACCCTTATCA+AGG + Chr3:75749464-75749483 None:intergenic 45.0%
AGTTGCAGAGCTACCAGTAA+AGG + Chr3:75749206-75749225 None:intergenic 45.0%
ATCTCAACGGCTAAGAGTGA+AGG - Chr3:75750745-75750764 MsG0380015836.01.T01:CDS 45.0%
ATTTCTGACCCCTTGGAAGA+AGG - Chr3:75750052-75750071 MsG0380015836.01.T01:intron 45.0%
CATACGAGACTGTCTCAACA+TGG + Chr3:75747490-75747509 None:intergenic 45.0%
CATGCAGTTGTTACGTAGTC+CGG - Chr3:75750295-75750314 MsG0380015836.01.T01:CDS 45.0%
CCTGTGCTTCACTGACAATA+GGG + Chr3:75750090-75750109 None:intergenic 45.0%
CGTATGATACTCAGTGTGGA+GGG - Chr3:75747504-75747523 MsG0380015836.01.T01:three_prime_UTR 45.0%
CTCTGGCATGGAATATGGTT+TGG - Chr3:75751615-75751634 MsG0380015836.01.T01:CDS 45.0%
CTGTCTCAACATGGAGAATG+AGG + Chr3:75747481-75747500 None:intergenic 45.0%
GAACTATCCTCTCTCAATGG+CGG - Chr3:75748768-75748787 MsG0380015836.01.T01:intron 45.0%
GGCGAAATATGCAGAGAAGT+TGG - Chr3:75748957-75748976 MsG0380015836.01.T01:intron 45.0%
GGTACATATCTGATGAGCAG+TGG - Chr3:75751522-75751541 MsG0380015836.01.T01:intron 45.0%
GTCTCGTATGATACTCAGTG+TGG - Chr3:75747500-75747519 MsG0380015836.01.T01:three_prime_UTR 45.0%
GTTGCTGAATGGACCATCTA+TGG - Chr3:75749701-75749720 MsG0380015836.01.T01:CDS 45.0%
TCATGCACGGTTAAGCTACT+TGG + Chr3:75747828-75747847 None:intergenic 45.0%
TCGTATGATACTCAGTGTGG+AGG - Chr3:75747503-75747522 MsG0380015836.01.T01:three_prime_UTR 45.0%
TTGGTCGCGAATTAGGAGAA+TGG - Chr3:75751370-75751389 MsG0380015836.01.T01:intron 45.0%
! AAACCACTGGATGAAGCACT+GGG - Chr3:75748428-75748447 MsG0380015836.01.T01:intron 45.0%
! ATCAACTCACTGGGTGTCAT+TGG + Chr3:75751027-75751046 None:intergenic 45.0%
! TTACTGGTAGCTCTGCAACT+GGG - Chr3:75749206-75749225 MsG0380015836.01.T01:intron 45.0%
! TTTACTGGTAGCTCTGCAAC+TGG - Chr3:75749205-75749224 MsG0380015836.01.T01:intron 45.0%
!! ACTATGCTGGACTTGCTGAA+GGG - Chr3:75748573-75748592 MsG0380015836.01.T01:intron 45.0%
!! CCACCAAGCTCTAGAAAAAC+AGG + Chr3:75749408-75749427 None:intergenic 45.0%
!! GCATGGAATATGGTTTGGTG+TGG - Chr3:75751620-75751639 MsG0380015836.01.T01:CDS 45.0%
!! TACTATGCTGGACTTGCTGA+AGG - Chr3:75748572-75748591 MsG0380015836.01.T01:intron 45.0%
!!! AGTGGTTTTGGTCGCGAATT+AGG - Chr3:75751363-75751382 MsG0380015836.01.T01:intron 45.0%
!!! CAGCCTGTTTTTCTAGAGCT+TGG - Chr3:75749402-75749421 MsG0380015836.01.T01:CDS 45.0%
!!! CCTGTTTTTCTAGAGCTTGG+TGG - Chr3:75749405-75749424 MsG0380015836.01.T01:CDS 45.0%
AAACCTCCTAGCGATTCCGT+TGG - Chr3:75749927-75749946 MsG0380015836.01.T01:CDS 50.0%
AAGATGCGAGCGCCTATCTA+AGG - Chr3:75751169-75751188 MsG0380015836.01.T01:intron 50.0%
ACCACTAGGCCAACCCAAAT+GGG + Chr3:75750491-75750510 None:intergenic 50.0%
ACTTTCGTGGTGTCCAAACG+AGG + Chr3:75747431-75747450 None:intergenic 50.0%
AGCCTGCAACCTTCTTCCAA+GGG + Chr3:75750064-75750083 None:intergenic 50.0%
AGGCTTCATTCGAGCTCCAT+GGG - Chr3:75751326-75751345 MsG0380015836.01.T01:intron 50.0%
AGTTACTCCCACCTATCGAG+GGG + Chr3:75747595-75747614 None:intergenic 50.0%
ATGACCTCCTCATTAAGGGC+TGG - Chr3:75747555-75747574 MsG0380015836.01.T01:three_prime_UTR 50.0%
CAGACAGTCGATGACTTTCG+TGG + Chr3:75747444-75747463 None:intergenic 50.0%
CAGTTACTCCCACCTATCGA+GGG + Chr3:75747596-75747615 None:intergenic 50.0%
CCCTATTGTCAGTGAAGCAC+AGG - Chr3:75750087-75750106 MsG0380015836.01.T01:intron 50.0%
CTACGTTTAATGCCTCCCCA+TGG + Chr3:75751345-75751364 None:intergenic 50.0%
GAAGGAGGCTGACTATAAGG+TGG + Chr3:75747867-75747886 None:intergenic 50.0%
GAATCGAACCTGAGACCTCA+AGG + Chr3:75750543-75750562 None:intergenic 50.0%
TACCACTAGGCCAACCCAAA+TGG + Chr3:75750492-75750511 None:intergenic 50.0%
TAGCCTGCAACCTTCTTCCA+AGG + Chr3:75750065-75750084 None:intergenic 50.0%
TCACAAACGGTGCTCATGCA+CGG + Chr3:75747841-75747860 None:intergenic 50.0%
TCCGAAGGAGGCTGACTATA+AGG + Chr3:75747870-75747889 None:intergenic 50.0%
TCGATAGGTGGGAGTAACTG+CGG - Chr3:75747596-75747615 MsG0380015836.01.T01:CDS 50.0%
TGAGCAGGCTGGTGATATAG+AGG + Chr3:75747759-75747778 None:intergenic 50.0%
TGATACTCAGTGTGGAGGGA+TGG - Chr3:75747508-75747527 MsG0380015836.01.T01:three_prime_UTR 50.0%
TGCTTACTTGGGACCTGTTG+TGG - Chr3:75748509-75748528 MsG0380015836.01.T01:intron 50.0%
TGGTGTCCAAACGAGGATGA+GGG + Chr3:75747424-75747443 None:intergenic 50.0%
TTGCATCCCTCATCCTCGTT+TGG - Chr3:75747415-75747434 MsG0380015836.01.T01:three_prime_UTR 50.0%
TTGCATCGGGGTACATTGTC+TGG + Chr3:75747640-75747659 None:intergenic 50.0%
TTGGAAGAAGGTTGCAGGCT+AGG - Chr3:75750064-75750083 MsG0380015836.01.T01:intron 50.0%
! ACTGGATTAGGCCATGAAGC+TGG - Chr3:75749008-75749027 MsG0380015836.01.T01:intron 50.0%
! GTAGTCAGGGAGCGTAATCT+CGG - Chr3:75747720-75747739 MsG0380015836.01.T01:intron 50.0%
!! AACCACTGGATGAAGCACTG+GGG - Chr3:75748429-75748448 MsG0380015836.01.T01:intron 50.0%
!! AGAGAAGTTGGCCTTCCTTC+CGG - Chr3:75748969-75748988 MsG0380015836.01.T01:intron 50.0%
!! GATAGGTACTGATCCGAAGG+AGG + Chr3:75747882-75747901 None:intergenic 50.0%
!! TGGCCTAGTGGTATTGGCTT+GGG - Chr3:75750499-75750518 MsG0380015836.01.T01:CDS 50.0%
!! TGGGGAGGCATTAAACGTAG+TGG - Chr3:75751345-75751364 MsG0380015836.01.T01:intron 50.0%
!! TTGGCCTAGTGGTATTGGCT+TGG - Chr3:75750498-75750517 MsG0380015836.01.T01:CDS 50.0%
!! TTGGGTTGGCCTAGTGGTAT+TGG - Chr3:75750493-75750512 MsG0380015836.01.T01:CDS 50.0%
AAGCCAACGGAATCGCTAGG+AGG + Chr3:75749933-75749952 None:intergenic 55.0%
ACCCCTTGGAAGAAGGTTGC+AGG - Chr3:75750059-75750078 MsG0380015836.01.T01:intron 55.0%
ATCCTCTCTCAATGGCGGCA+AGG - Chr3:75748773-75748792 MsG0380015836.01.T01:intron 55.0%
CAGGCTTCATTCGAGCTCCA+TGG - Chr3:75751325-75751344 MsG0380015836.01.T01:intron 55.0%
CCAAAGCCAACGGAATCGCT+AGG + Chr3:75749936-75749955 None:intergenic 55.0%
CCATGAAGCTGGCGCTTCTT+TGG - Chr3:75749019-75749038 MsG0380015836.01.T01:intron 55.0%
CGATAGGTGGGAGTAACTGC+GGG - Chr3:75747597-75747616 MsG0380015836.01.T01:CDS 55.0%
CTAGACCTGCAACCTGCACA+CGG - Chr3:75747788-75747807 MsG0380015836.01.T01:CDS 55.0%
GCAGTTACTCCCACCTATCG+AGG + Chr3:75747597-75747616 None:intergenic 55.0%
GCCTGCAACCTTCTTCCAAG+GGG + Chr3:75750063-75750082 None:intergenic 55.0%
GGCTTCATTCGAGCTCCATG+GGG - Chr3:75751327-75751346 MsG0380015836.01.T01:intron 55.0%
GGTCCCAAGCCAATACCACT+AGG + Chr3:75750505-75750524 None:intergenic 55.0%
GTCTAGCACTCTAGCTGAGC+AGG + Chr3:75747774-75747793 None:intergenic 55.0%
GTGGTGTCCAAACGAGGATG+AGG + Chr3:75747425-75747444 None:intergenic 55.0%
GTTACTCCCACCTATCGAGG+GGG + Chr3:75747594-75747613 None:intergenic 55.0%
TATCTGATGAGCAGTGGGGC+TGG - Chr3:75751528-75751547 MsG0380015836.01.T01:intron 55.0%
TCGAACCTGAGACCTCAAGG+AGG + Chr3:75750540-75750559 None:intergenic 55.0%
TTCATTCGAGCTCCATGGGG+AGG - Chr3:75751330-75751349 MsG0380015836.01.T01:intron 55.0%
TTCCTTGCCGCCATTGAGAG+AGG + Chr3:75748778-75748797 None:intergenic 55.0%
! AACTGGTGGATGTCGACCAG+AGG - Chr3:75750780-75750799 MsG0380015836.01.T01:CDS 55.0%
! CTCCTCATTAAGGGCTGGTG+CGG - Chr3:75747560-75747579 MsG0380015836.01.T01:exon 55.0%
! GTGCATGAGCACCGTTTGTG+AGG - Chr3:75747840-75747859 MsG0380015836.01.T01:CDS 55.0%
!! ACCACTGGATGAAGCACTGG+GGG - Chr3:75748430-75748449 MsG0380015836.01.T01:intron 55.0%
!! ACCCATTTGGGTTGGCCTAG+TGG - Chr3:75750487-75750506 MsG0380015836.01.T01:CDS 55.0%
!! AGTGGTATTGGCTTGGGACC+TGG - Chr3:75750505-75750524 MsG0380015836.01.T01:CDS 55.0%
!! CCAAAGAAGCGCCAGCTTCA+TGG + Chr3:75749022-75749041 None:intergenic 55.0%
!! CCTAGCGATTCCGTTGGCTT+TGG - Chr3:75749933-75749952 MsG0380015836.01.T01:CDS 55.0%
!! GTGGTATTGGCTTGGGACCT+GGG - Chr3:75750506-75750525 MsG0380015836.01.T01:CDS 55.0%
!! TGCTGGACTTGCTGAAGGGT+TGG - Chr3:75748577-75748596 MsG0380015836.01.T01:intron 55.0%
AGAGTTCGTACGCCGTGTGC+AGG + Chr3:75747803-75747822 None:intergenic 60.0%
AGCACTCTAGCTGAGCAGGC+TGG + Chr3:75747770-75747789 None:intergenic 60.0%
CACCGCACCAGCCCTTAATG+AGG + Chr3:75747565-75747584 None:intergenic 60.0%
CCTGAACCCCCTCGATAGGT+GGG - Chr3:75747585-75747604 MsG0380015836.01.T01:CDS 60.0%
CGCACCAGCCCTTAATGAGG+AGG + Chr3:75747562-75747581 None:intergenic 60.0%
GTGCTCCTCCTTGAGGTCTC+AGG - Chr3:75750532-75750551 MsG0380015836.01.T01:CDS 60.0%
TCCCCCAGTGCTTCATCCAG+TGG + Chr3:75748434-75748453 None:intergenic 60.0%
! ATTGCTCCAGCTCTGGCTGC+TGG - Chr3:75748799-75748818 MsG0380015836.01.T01:intron 60.0%
! TCAAGGAGGAGCACACTCCC+AGG + Chr3:75750526-75750545 None:intergenic 60.0%
! TGGGAGTGTGCTCCTCCTTG+AGG - Chr3:75750525-75750544 MsG0380015836.01.T01:CDS 60.0%
!! GGATGAAGCACTGGGGGACA+TGG - Chr3:75748436-75748455 MsG0380015836.01.T01:intron 60.0%
CCCACCTATCGAGGGGGTTC+AGG + Chr3:75747588-75747607 None:intergenic 65.0%
GCACAACCAGCAGCCAGAGC+TGG + Chr3:75748808-75748827 None:intergenic 65.0%
GCCTGAACCCCCTCGATAGG+TGG - Chr3:75747584-75747603 MsG0380015836.01.T01:CDS 65.0%
GGTGCCTGAACCCCCTCGAT+AGG - Chr3:75747581-75747600 MsG0380015836.01.T01:CDS 65.0%
GTACGCCGTGTGCAGGTTGC+AGG + Chr3:75747796-75747815 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 75747395 75751759 75747395 ID=MsG0380015836.01;Name=MsG0380015836.01
Chr3 mRNA 75747395 75751759 75747395 ID=MsG0380015836.01.T01;Parent=MsG0380015836.01;Name=MsG0380015836.01.T01;_AED=0.18;_eAED=0.18;_QI=0|0.92|0.85|0.92|1|1|14|182|490
Chr3 exon 75747395 75747670 75747395 ID=MsG0380015836.01.T01:exon:1128;Parent=MsG0380015836.01.T01
Chr3 exon 75747763 75747869 75747763 ID=MsG0380015836.01.T01:exon:1127;Parent=MsG0380015836.01.T01
Chr3 exon 75747964 75748024 75747964 ID=MsG0380015836.01.T01:exon:1126;Parent=MsG0380015836.01.T01
Chr3 exon 75748118 75748269 75748118 ID=MsG0380015836.01.T01:exon:1125;Parent=MsG0380015836.01.T01
Chr3 exon 75748353 75748430 75748353 ID=MsG0380015836.01.T01:exon:1124;Parent=MsG0380015836.01.T01
Chr3 exon 75749046 75749159 75749046 ID=MsG0380015836.01.T01:exon:1123;Parent=MsG0380015836.01.T01
Chr3 exon 75749376 75749452 75749376 ID=MsG0380015836.01.T01:exon:1122;Parent=MsG0380015836.01.T01
Chr3 exon 75749683 75749749 75749683 ID=MsG0380015836.01.T01:exon:1121;Parent=MsG0380015836.01.T01
Chr3 exon 75749890 75749955 75749890 ID=MsG0380015836.01.T01:exon:1120;Parent=MsG0380015836.01.T01
Chr3 exon 75750090 75750213 75750090 ID=MsG0380015836.01.T01:exon:1119;Parent=MsG0380015836.01.T01
Chr3 exon 75750294 75750386 75750294 ID=MsG0380015836.01.T01:exon:1118;Parent=MsG0380015836.01.T01
Chr3 exon 75750458 75750606 75750458 ID=MsG0380015836.01.T01:exon:1117;Parent=MsG0380015836.01.T01
Chr3 exon 75750697 75750805 75750697 ID=MsG0380015836.01.T01:exon:1116;Parent=MsG0380015836.01.T01
Chr3 exon 75751578 75751759 75751578 ID=MsG0380015836.01.T01:exon:1115;Parent=MsG0380015836.01.T01
Chr3 CDS 75751578 75751759 75751578 ID=MsG0380015836.01.T01:cds;Parent=MsG0380015836.01.T01
Chr3 CDS 75750697 75750805 75750697 ID=MsG0380015836.01.T01:cds;Parent=MsG0380015836.01.T01
Chr3 CDS 75750458 75750606 75750458 ID=MsG0380015836.01.T01:cds;Parent=MsG0380015836.01.T01
Chr3 CDS 75750294 75750386 75750294 ID=MsG0380015836.01.T01:cds;Parent=MsG0380015836.01.T01
Chr3 CDS 75750090 75750213 75750090 ID=MsG0380015836.01.T01:cds;Parent=MsG0380015836.01.T01
Chr3 CDS 75749890 75749955 75749890 ID=MsG0380015836.01.T01:cds;Parent=MsG0380015836.01.T01
Chr3 CDS 75749683 75749749 75749683 ID=MsG0380015836.01.T01:cds;Parent=MsG0380015836.01.T01
Chr3 CDS 75749376 75749452 75749376 ID=MsG0380015836.01.T01:cds;Parent=MsG0380015836.01.T01
Chr3 CDS 75749046 75749159 75749046 ID=MsG0380015836.01.T01:cds;Parent=MsG0380015836.01.T01
Chr3 CDS 75748353 75748430 75748353 ID=MsG0380015836.01.T01:cds;Parent=MsG0380015836.01.T01
Chr3 CDS 75748118 75748269 75748118 ID=MsG0380015836.01.T01:cds;Parent=MsG0380015836.01.T01
Chr3 CDS 75747964 75748024 75747964 ID=MsG0380015836.01.T01:cds;Parent=MsG0380015836.01.T01
Chr3 CDS 75747763 75747869 75747763 ID=MsG0380015836.01.T01:cds;Parent=MsG0380015836.01.T01
Chr3 CDS 75747577 75747670 75747577 ID=MsG0380015836.01.T01:cds;Parent=MsG0380015836.01.T01
Chr3 three_prime_UTR 75747395 75747576 75747395 ID=MsG0380015836.01.T01:three_prime_utr;Parent=MsG0380015836.01.T01
Gene Sequence

>MsG0380015836.01.T01

ATGCGTAGTGGGTGGGATCATTGCATCCCTCATCCTCGTTTGGACACCACGAAAGTCATCGACTGTCTGACAATAACGCAACACCTCATTCTCCATGTTGAGACAGTCTCGTATGATACTCAGTGTGGAGGGATGGTCTCTAGCATGATGCTGCTCAATAATGACCTCCTCATTAAGGGCTGTTATCCTTTTTCTTTTCCTTTCTCACAGATAACTGAGAAAAAGAATGAACTAGGCAAACTTGAATCAATTGATTGTGGAAAACCACTGGATGAAGCACTGGGGGACATGGGCGGTGTTATTGGTTGTTTTGAGTACTATGCTGGACTTGCTGAAGGGTTGGATGCAAAGCAAAATGCTCCTATATCTCTTCCTATGGATACCTTCAAAAGCTATGTTCTCAAGGAGCCTATTGGTGTTGTTGCATTAATTACTCCATGGAACTATCCTCTCTCAATGGCGGCAAGGAAAATTGCTCCAGCTCTGGCTGCTGGTTGTGCTGCAATATTGAAGCCGTCTGAATTGGCATCTGTGACTTGTTTGGAGTTAGGCGAAATATGCAGAGAAGTTGGCCTTCCTTCCGGTGTCTTAAATATTGTCACTGGATTAGGCCATGAAGCTGGCGCTTCTTTGGCATCTCATCCTGATGTAGATATGATTTCCTTTACTGGTAGCTCTGCAACTGGGAGCAAGATTATGACAGCTGCAGCACAACTAATCAAGCCTGTTTTTCTAGAGCTTGGTGGAAAGAGCCCAATAGTTGTTTTTGAGGATGTTGACCTTGATAAGGTTGCTGAATGGACCATCTATGGCTGCTTCTATACTAATGGTCAGATATGCAGTGCAACATCTCGCCTTATTGTGCATGAAAGTATAGCCGTAGAATTTGTGAATAGACTTGTGAAATGGGCCAAAAACATCAAAATTTCTGACCCCTTGGAAGAAGGTTGCAGGCTAGGCCCTATTGTCAGTGAAGCACAGTATAAGAAAGTATTGAATTTTATCTCAACGGCTAAGAGTGAAGGTGCAACAATTTTAACTGGTGGATGTCGACCAGAGAATTTAAAGAAGGGATACTTTGTTGAACCAACCATCATAACAGATGTGACTACCTCGATGCAAATTTGGAGAGAAGAGGTTTTTGGACCTGTACTCTCTGTGAAAACATTTAGCACTGAGGAAGAAGCTATTGATCTAGCCAATGACACCCACTATGGCTTGGGGTCTGCTGTGATGTCAAATGATTTAGAAAGATGCGAGCGCCTATCTAAGGTTCTTCAATCTGGAATTGTATGGATCAATTGTGCTCAAACAGGCTTCATTCGAGCTCCATGGGGAGGCATTAAACGTAGTGGTTTTGGTCGCGAATTAGGAGAATGGGGACTTGATAATTACTTGAGTGTGAAGCAAGTTACTAGGTACATATCTGATGAGCAGTGGGGCTGGTATCAATCCCCTTCAAAGATGTCGTAG
Protein sequence

>MsG0380015836.01.T01

MRSGWDHCIPHPRLDTTKVIDCLTITQHLILHVETVSYDTQCGGMVSSMMLLNNDLLIKGCYPFSFPFSQITEKKNELGKLESIDCGKPLDEALGDMGGVIGCFEYYAGLAEGLDAKQNAPISLPMDTFKSYVLKEPIGVVALITPWNYPLSMAARKIAPALAAGCAAILKPSELASVTCLELGEICREVGLPSGVLNIVTGLGHEAGASLASHPDVDMISFTGSSATGSKIMTAAAQLIKPVFLELGGKSPIVVFEDVDLDKVAEWTIYGCFYTNGQICSATSRLIVHESIAVEFVNRLVKWAKNIKISDPLEEGCRLGPIVSEAQYKKVLNFISTAKSEGATILTGGCRPENLKKGYFVEPTIITDVTTSMQIWREEVFGPVLSVKTFSTEEEAIDLANDTHYGLGSAVMSNDLERCERLSKVLQSGIVWINCAQTGFIRAPWGGIKRSGFGRELGEWGLDNYLSVKQVTRYISDEQWGWYQSPSKMS*