AlfalfaGEDB | MsG0780039619.01

M. sativa cultivar ZhongmuNo.1 / MsG0780039619.01

KEGG: -
GO: GO:0008168
PFAM: PF03141

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039619.01.T01	XP_024922792.1	50.758	396	102	8	53	360	143	533	2.23E-120	369

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039619.01.T01	O80844	55.556	216	60	6	176	360	389	599	8.10E-65	219

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039619.01.T01	A0A6P6FL01	50.758	396	102	8	53	360	143	533	1.07e-120	369

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048347.01	MsG0780039619.01	0.810926	9.042572e-51	5.522541e-48
MsG0080048352.01	MsG0780039619.01	0.806915	6.523755e-50	3.584553e-47
MsG0080048509.01	MsG0780039619.01	0.821028	5.018998e-53	4.037404e-50
MsG0080048889.01	MsG0780039619.01	0.835090	2.053671e-56	2.485043e-53
MsG0080049008.01	MsG0780039619.01	0.820694	5.991924e-53	4.774562e-50
MsG0080049023.01	MsG0780039619.01	-0.806939	6.446953e-50	3.544545e-47
MsG0080049038.01	MsG0780039619.01	-0.801680	8.033381e-49	3.859776e-46
MsG0080049046.01	MsG0780039619.01	0.827708	1.347554e-54	1.311160e-51
MsG0080049066.01	MsG0780039619.01	-0.826498	2.624226e-54	2.465176e-51
MsG0180000147.01	MsG0780039619.01	0.816770	4.660019e-52	3.332112e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039619.01.T01	MTR_7g076170	71.429	217	30	6	176	362	402	616	2.02e-87	276
MsG0780039619.01.T01	MTR_7g076170	63.750	160	19	2	51	171	138	297	1.29e-57	198
MsG0780039619.01.T01	MTR_8g432680	62.911	213	42	6	176	358	407	612	1.11e-75	246
MsG0780039619.01.T01	MTR_8g432680	59.119	159	26	2	52	171	143	301	5.16e-52	183
MsG0780039619.01.T01	MTR_0019s0120	51.659	211	69	7	176	358	403	608	4.99e-61	207
MsG0780039619.01.T01	MTR_0019s0120	52.353	170	42	2	46	176	137	306	1.33e-45	165
MsG0780039619.01.T01	MTR_1g101370	49.763	211	72	8	176	358	395	599	4.50e-55	191
MsG0780039619.01.T01	MTR_1g101370	52.695	167	40	2	49	176	128	294	3.82e-45	164
MsG0780039619.01.T01	MTR_0019s0120	60.630	127	49	1	176	301	403	529	1.31e-51	180
MsG0780039619.01.T01	MTR_0019s0120	52.353	170	42	2	46	176	137	306	5.66e-46	165

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039619.01.T01	AT2G45750	55.556	216	60	6	176	360	389	599	8.25e-66	219
MsG0780039619.01.T01	AT2G45750	54.819	166	36	2	45	171	118	283	2.82e-49	175
MsG0780039619.01.T01	AT4G00750	56.796	206	56	6	176	349	397	601	2.79e-65	218
MsG0780039619.01.T01	AT4G00750	56.250	160	31	2	51	171	133	292	8.41e-49	174
MsG0780039619.01.T01	AT1G33170	44.076	211	85	7	166	348	402	607	2.94e-47	170
MsG0780039619.01.T01	AT1G33170	49.091	165	45	2	46	171	142	306	3.15e-41	153
MsG0780039619.01.T01	AT1G26850	49.479	192	67	6	176	339	386	575	4.25e-47	169
MsG0780039619.01.T01	AT1G26850	45.455	165	51	3	46	171	118	282	1.11e-36	140
MsG0780039619.01.T01	AT1G26850	49.479	192	67	6	176	339	386	575	4.25e-47	169
MsG0780039619.01.T01	AT1G26850	45.455	165	51	3	46	171	118	282	1.11e-36	140

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Find 119 sgRNAs with CRISPR-Local

Find 483 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCATCAACCTTAAAGA+TGG	0.440201	7:-66769498	MsG0780039619.01.T01:CDS
AAACTTCCACTGCTAATCCT+TGG	0.531039	7:+66766902	None:intergenic
AACACAATTGGAGAGATAAC+CGG	0.473286	7:-66772287	MsG0780039619.01.T01:CDS
AACTCATCAACCTTAAAGAT+GGG	0.532726	7:-66769497	MsG0780039619.01.T01:intron
AACTCTCTTCTTCCATAACT+CGG	0.594085	7:+66766844	None:intergenic
AAGAGGAGATTCTCCGGTGT+CGG	0.594261	7:-66769724	MsG0780039619.01.T01:CDS
AAGATCAATGACGTCGTTCG+TGG	0.481610	7:+66772311	None:intergenic
AAGGATTAGCAGTGGAAGTT+TGG	0.319848	7:-66766900	MsG0780039619.01.T01:CDS
AATAATATCACACTCCCTTG+TGG	0.620602	7:+66765744	None:intergenic
AATGATTGATGATCCAGTTT+GGG	0.502411	7:-66766726	MsG0780039619.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGGCAAAAAAAAATCGG+CGG	+	Chr7:66766871-66766890	None:intergenic	30.0%
AAACTCATCAACCTTAAAGA+TGG	-	Chr7:66768198-66768217	MsG0780039619.01.T01:intron	30.0%
AAAGGGAATGTAGGTTAATT+GGG	-	Chr7:66768540-66768559	MsG0780039619.01.T01:intron	30.0%
AACTCATCAACCTTAAAGAT+GGG	-	Chr7:66768199-66768218	MsG0780039619.01.T01:intron	30.0%
AAGATATTGAATTGTGACCA+CGG	-	Chr7:66770212-66770231	MsG0780039619.01.T01:intron	30.0%
ACAAATTGTCTTCTATGCAT+CGG	-	Chr7:66766607-66766626	MsG0780039619.01.T01:intron	30.0%
ACCAAAAAAAACTGATGTCA+CGG	-	Chr7:66770310-66770329	MsG0780039619.01.T01:intron	30.0%
ACGTATATATAGAGAGAGAA+AGG	+	Chr7:66767425-66767444	None:intergenic	30.0%
ACTTGATATGAATGCTTACA+TGG	-	Chr7:66770931-66770950	MsG0780039619.01.T01:intron	30.0%
AGCAGATTATTCATCTCAAT+AGG	+	Chr7:66766813-66766832	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	66765348	66772370	66765348	ID=MsG0780039619.01;Name=MsG0780039619.01
Chr7	mRNA	66765348	66772370	66765348	ID=MsG0780039619.01.T01;Parent=MsG0780039619.01;Name=MsG0780039619.01.T01;_AED=0.50;_eAED=0.55;_QI=0\|0\|0.5\|1\|1\|1\|6\|281\|365
Chr7	exon	66765348	66765810	66765348	ID=MsG0780039619.01.T01:exon:13257;Parent=MsG0780039619.01.T01
Chr7	exon	66766642	66767030	66766642	ID=MsG0780039619.01.T01:exon:13256;Parent=MsG0780039619.01.T01
Chr7	exon	66767940	66768146	66767940	ID=MsG0780039619.01.T01:exon:13255;Parent=MsG0780039619.01.T01
Chr7	exon	66769498	66769581	66769498	ID=MsG0780039619.01.T01:exon:13254;Parent=MsG0780039619.01.T01
Chr7	exon	66769662	66769747	66769662	ID=MsG0780039619.01.T01:exon:13253;Parent=MsG0780039619.01.T01
Chr7	exon	66772221	66772370	66772221	ID=MsG0780039619.01.T01:exon:13252;Parent=MsG0780039619.01.T01
Chr7	CDS	66772221	66772370	66772221	ID=MsG0780039619.01.T01:cds;Parent=MsG0780039619.01.T01
Chr7	CDS	66769662	66769747	66769662	ID=MsG0780039619.01.T01:cds;Parent=MsG0780039619.01.T01
Chr7	CDS	66769498	66769581	66769498	ID=MsG0780039619.01.T01:cds;Parent=MsG0780039619.01.T01
Chr7	CDS	66767940	66768146	66767940	ID=MsG0780039619.01.T01:cds;Parent=MsG0780039619.01.T01
Chr7	CDS	66766642	66767030	66766642	ID=MsG0780039619.01.T01:cds;Parent=MsG0780039619.01.T01
Chr7	CDS	66765629	66765810	66765629	ID=MsG0780039619.01.T01:cds;Parent=MsG0780039619.01.T01
Chr7	three_prime_UTR	66765348	66765628	66765348	ID=MsG0780039619.01.T01:three_prime_utr;Parent=MsG0780039619.01.T01

Gene Sequence

>MsG0780039619.01.T01

ATGATTCGAAGGGAACGATGTTACGATAAATTTGTCCCCACGAACGACGTCATTGATCTTGAACACAATTGGAGAGATAACCGGAGTGGATGCTACGAAGATGATACAACACTTGACGGCGGTTCTTCCTCAATGCGGAGTATTGTACCTAAAGAGGAGATTCTCCGGTGTCGGATACCGGCACCATATGGCTACCGCATTCCGCCGCGGTGGCCTGAGAGCCGTGATTGGGCTTGGTTTCCTGGTGGTGGGACCATGTTTCCACGTGGCGCTGGTGCATACATTGATGATATCGGAAAACTCATCAACCTTAAAGATGGGTTGCAAGTTGGGGAGCATATCTTTTGCCACGTGACATATAGCAGTGTCATTGCACCAAGAGATACACATGAAGCTCAAGTTCAATTTGCTCTTGAACGAGGAGTTCCAGCTTTGATTGGTGTCATTGCCACAATTAGGCTTCCTTACCCTTCAAGAGCCTTTGACATGGCTCATTGCTCACGTTGCCTAATTCTTGGGCCAGAATGGTACACCAAAATGGATACATGTTTGACACCACTTCCTGAGGTATCTGACATAAAAGAAGTTAGTGGTGGAGGGTCCAATTGGCCTGAGAGACTAACATCAGTTCCACCAAGGATTAGCAGTGGAAGTTTGGATGGAATCACAGCTGAGATGTTCAAAGAAAATACCGAGTTATGGAAGAAGAGAGTTGCATACTACAAGACACTTGATTATCAGCTAGCAGAGCCGGGGAGATACCGTAATTTACTTGATATGAATGCTTACATGGGAGGATTTGCAGCTGCAATGATTGATGATCCAGTTTGGGTCATGAATATTGTTCCGGTCCAGGCTGAGATCAACACACTTGGTGTCGTTTATGAACGCGGATTGATCGGACATATCAGAACTGATGTAATTAGAGGACATTTTCTTGAGATGGATAGGATATTGAGGCCACAAGGGAGTGTGATATTATTGCGTGATGATGTGGATGTGTTGTTGAAGGTAAAAGATTTGCAGATGCAATGCAATGGGATGCTAGAATTGCAGACCATGAAAAGGGACCACACCAAAGAGAAAAGATACTTGTAG

Protein sequence

>MsG0780039619.01.T01

MIRRERCYDKFVPTNDVIDLEHNWRDNRSGCYEDDTTLDGGSSSMRSIVPKEEILRCRIPAPYGYRIPPRWPESRDWAWFPGGGTMFPRGAGAYIDDIGKLINLKDGLQVGEHIFCHVTYSSVIAPRDTHEAQVQFALERGVPALIGVIATIRLPYPSRAFDMAHCSRCLILGPEWYTKMDTCLTPLPEVSDIKEVSGGGSNWPERLTSVPPRISSGSLDGITAEMFKENTELWKKRVAYYKTLDYQLAEPGRYRNLLDMNAYMGGFAAAMIDDPVWVMNIVPVQAEINTLGVVYERGLIGHIRTDVIRGHFLEMDRILRPQGSVILLRDDVDVLLKVKDLQMQCNGMLELQTMKRDHTKEKRYL*