Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016001.01.T01 | AES71688.2 | 96.667 | 270 | 9 | 0 | 1 | 270 | 176 | 445 | 0 | 555 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016001.01.T01 | Q9SSE8 | 68.914 | 267 | 83 | 0 | 1 | 267 | 201 | 467 | 8.77E-139 | 402 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016001.01.T01 | G7J7C8 | 96.667 | 270 | 9 | 0 | 1 | 270 | 176 | 445 | 0.0 | 555 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180001371.01 | MsG0380016001.01 | 0.802051 | 6.738893e-49 | 3.268709e-46 |
| MsG0380016001.01 | MsG0780039975.01 | 0.805895 | 1.070038e-49 | 5.728077e-47 |
| MsG0280010198.01 | MsG0380016001.01 | 0.800829 | 1.199405e-48 | 5.640403e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016001.01.T01 | MTR_3g080690 | 96.667 | 270 | 9 | 0 | 1 | 270 | 176 | 445 | 0.0 | 555 |
| MsG0380016001.01.T01 | MTR_3g081240 | 95.185 | 270 | 13 | 0 | 1 | 270 | 178 | 447 | 0.0 | 548 |
| MsG0380016001.01.T01 | MTR_3g097310 | 63.197 | 269 | 99 | 0 | 1 | 269 | 223 | 491 | 3.87e-128 | 373 |
| MsG0380016001.01.T01 | MTR_3g106690 | 59.701 | 268 | 106 | 1 | 2 | 267 | 122 | 389 | 2.21e-117 | 342 |
| MsG0380016001.01.T01 | MTR_1g061760 | 60.465 | 258 | 101 | 1 | 13 | 269 | 227 | 484 | 8.87e-117 | 343 |
| MsG0380016001.01.T01 | MTR_7g103260 | 58.268 | 254 | 106 | 0 | 13 | 266 | 141 | 394 | 7.02e-114 | 333 |
| MsG0380016001.01.T01 | MTR_7g103270 | 59.677 | 248 | 100 | 0 | 20 | 267 | 149 | 396 | 3.32e-112 | 329 |
| MsG0380016001.01.T01 | MTR_4g115540 | 54.275 | 269 | 119 | 1 | 2 | 266 | 353 | 621 | 4.57e-100 | 305 |
| MsG0380016001.01.T01 | MTR_4g115460 | 51.852 | 270 | 125 | 3 | 2 | 267 | 192 | 460 | 4.31e-95 | 287 |
| MsG0380016001.01.T01 | MTR_4g115530 | 53.659 | 246 | 114 | 0 | 21 | 266 | 88 | 333 | 9.20e-94 | 280 |
| MsG0380016001.01.T01 | MTR_4g115530 | 53.659 | 246 | 114 | 0 | 21 | 266 | 142 | 387 | 1.59e-93 | 281 |
| MsG0380016001.01.T01 | MTR_4g100730 | 49.254 | 268 | 129 | 4 | 6 | 266 | 266 | 533 | 1.19e-84 | 263 |
| MsG0380016001.01.T01 | MTR_8g102840 | 47.287 | 258 | 128 | 3 | 13 | 265 | 352 | 606 | 1.01e-81 | 257 |
| MsG0380016001.01.T01 | MTR_3g110198 | 49.012 | 253 | 122 | 3 | 17 | 265 | 341 | 590 | 1.51e-81 | 256 |
| MsG0380016001.01.T01 | MTR_1g090733 | 47.328 | 262 | 128 | 4 | 11 | 266 | 288 | 545 | 3.94e-80 | 251 |
| MsG0380016001.01.T01 | MTR_1g006600 | 49.798 | 247 | 117 | 3 | 23 | 265 | 340 | 583 | 8.60e-80 | 251 |
| MsG0380016001.01.T01 | MTR_7g103150 | 47.826 | 253 | 125 | 3 | 17 | 265 | 232 | 481 | 1.49e-79 | 248 |
| MsG0380016001.01.T01 | MTR_3g110200 | 46.988 | 249 | 125 | 3 | 21 | 265 | 342 | 587 | 3.85e-75 | 239 |
| MsG0380016001.01.T01 | MTR_4g115540 | 52.747 | 182 | 82 | 1 | 2 | 179 | 353 | 534 | 1.34e-59 | 198 |
| MsG0380016001.01.T01 | MTR_5g031480 | 36.992 | 246 | 149 | 2 | 21 | 263 | 167 | 409 | 9.45e-56 | 185 |
| MsG0380016001.01.T01 | MTR_7g085840 | 39.357 | 249 | 143 | 5 | 21 | 267 | 83 | 325 | 8.39e-53 | 175 |
| MsG0380016001.01.T01 | MTR_5g049790 | 37.449 | 243 | 136 | 3 | 21 | 263 | 203 | 429 | 9.74e-52 | 175 |
| MsG0380016001.01.T01 | MTR_8g102840 | 43.931 | 173 | 89 | 3 | 13 | 180 | 352 | 521 | 5.03e-44 | 156 |
| MsG0380016001.01.T01 | MTR_8g096160 | 27.068 | 266 | 172 | 6 | 19 | 265 | 126 | 388 | 1.57e-27 | 110 |
| MsG0380016001.01.T01 | MTR_5g031480 | 34.731 | 167 | 103 | 2 | 21 | 184 | 167 | 330 | 2.06e-27 | 108 |
| MsG0380016001.01.T01 | MTR_5g031480 | 34.940 | 166 | 102 | 2 | 21 | 183 | 167 | 329 | 6.44e-27 | 107 |
| MsG0380016001.01.T01 | MTR_8g096140 | 28.358 | 268 | 166 | 8 | 19 | 265 | 126 | 388 | 1.22e-26 | 107 |
| MsG0380016001.01.T01 | MTR_4g057500 | 26.592 | 267 | 162 | 9 | 21 | 260 | 185 | 444 | 1.53e-21 | 94.0 |
| MsG0380016001.01.T01 | MTR_2g084245 | 27.615 | 239 | 141 | 7 | 21 | 234 | 167 | 398 | 8.75e-21 | 91.7 |
| MsG0380016001.01.T01 | MTR_5g049790 | 38.938 | 113 | 66 | 1 | 21 | 133 | 220 | 329 | 1.36e-17 | 81.6 |
| MsG0380016001.01.T01 | MTR_5g049790 | 38.938 | 113 | 66 | 1 | 21 | 133 | 203 | 312 | 1.72e-17 | 81.3 |
| MsG0380016001.01.T01 | MTR_3g037720 | 28.854 | 253 | 160 | 9 | 17 | 256 | 221 | 466 | 2.06e-17 | 82.0 |
| MsG0380016001.01.T01 | MTR_6g027310 | 28.151 | 238 | 152 | 7 | 35 | 260 | 235 | 465 | 8.54e-17 | 80.1 |
| MsG0380016001.01.T01 | MTR_4g084200 | 26.446 | 242 | 147 | 9 | 34 | 261 | 217 | 441 | 2.30e-16 | 79.0 |
| MsG0380016001.01.T01 | MTR_8g080490 | 27.311 | 238 | 156 | 7 | 31 | 256 | 162 | 394 | 1.99e-15 | 75.9 |
| MsG0380016001.01.T01 | MTR_3g085480 | 25.738 | 237 | 155 | 8 | 34 | 256 | 167 | 396 | 3.85e-14 | 72.0 |
| MsG0380016001.01.T01 | MTR_4g084200 | 26.147 | 218 | 137 | 8 | 34 | 237 | 217 | 424 | 1.19e-13 | 70.9 |
| MsG0380016001.01.T01 | MTR_4g084200 | 25.806 | 217 | 137 | 8 | 34 | 236 | 217 | 423 | 4.32e-13 | 68.9 |
| MsG0380016001.01.T01 | MTR_7g087100 | 26.860 | 242 | 150 | 10 | 35 | 260 | 240 | 470 | 5.08e-13 | 68.9 |
| MsG0380016001.01.T01 | MTR_4g077920 | 26.638 | 229 | 145 | 9 | 35 | 246 | 224 | 446 | 1.03e-12 | 68.2 |
| MsG0380016001.01.T01 | MTR_4g077920 | 26.638 | 229 | 145 | 9 | 35 | 246 | 224 | 446 | 1.08e-12 | 68.2 |
| MsG0380016001.01.T01 | MTR_4g077920 | 26.638 | 229 | 145 | 9 | 35 | 246 | 166 | 388 | 1.46e-12 | 67.4 |
| MsG0380016001.01.T01 | MTR_1g097090 | 25.630 | 238 | 150 | 6 | 31 | 245 | 191 | 424 | 4.17e-12 | 66.2 |
| MsG0380016001.01.T01 | MTR_1g097090 | 25.630 | 238 | 150 | 6 | 31 | 245 | 191 | 424 | 4.28e-12 | 66.2 |
| MsG0380016001.01.T01 | MTR_1g029350 | 27.397 | 219 | 139 | 8 | 24 | 225 | 158 | 373 | 8.09e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016001.01.T01 | AT3G07620 | 68.914 | 267 | 83 | 0 | 1 | 267 | 190 | 456 | 8.48e-140 | 401 |
| MsG0380016001.01.T01 | AT5G03795 | 58.140 | 258 | 108 | 0 | 13 | 270 | 259 | 516 | 5.94e-111 | 330 |
| MsG0380016001.01.T01 | AT5G11130 | 54.647 | 269 | 121 | 1 | 2 | 269 | 64 | 332 | 7.23e-108 | 316 |
| MsG0380016001.01.T01 | AT5G11130 | 54.647 | 269 | 121 | 1 | 2 | 269 | 208 | 476 | 7.68e-107 | 318 |
| MsG0380016001.01.T01 | AT5G25310 | 52.510 | 259 | 120 | 1 | 12 | 267 | 219 | 477 | 5.97e-103 | 308 |
| MsG0380016001.01.T01 | AT5G33290 | 53.704 | 270 | 121 | 1 | 2 | 267 | 227 | 496 | 6.29e-99 | 298 |
| MsG0380016001.01.T01 | AT3G42180 | 51.481 | 270 | 127 | 1 | 2 | 267 | 68 | 337 | 2.12e-97 | 289 |
| MsG0380016001.01.T01 | AT3G42180 | 51.481 | 270 | 127 | 1 | 2 | 267 | 197 | 466 | 2.37e-96 | 291 |
| MsG0380016001.01.T01 | AT5G20260 | 49.254 | 268 | 134 | 2 | 2 | 267 | 64 | 331 | 6.25e-91 | 273 |
| MsG0380016001.01.T01 | AT5G20260 | 49.254 | 268 | 134 | 2 | 2 | 267 | 91 | 358 | 1.19e-90 | 273 |
| MsG0380016001.01.T01 | AT5G20260 | 49.254 | 268 | 134 | 2 | 2 | 267 | 196 | 463 | 1.03e-89 | 274 |
| MsG0380016001.01.T01 | AT4G16745 | 52.174 | 253 | 114 | 4 | 21 | 266 | 277 | 529 | 2.64e-89 | 275 |
| MsG0380016001.01.T01 | AT4G32790 | 47.407 | 270 | 134 | 4 | 1 | 265 | 324 | 590 | 1.33e-82 | 259 |
| MsG0380016001.01.T01 | AT4G32790 | 47.407 | 270 | 134 | 4 | 1 | 265 | 324 | 590 | 1.33e-82 | 259 |
| MsG0380016001.01.T01 | AT4G32790 | 47.407 | 270 | 134 | 4 | 1 | 265 | 324 | 590 | 1.33e-82 | 259 |
| MsG0380016001.01.T01 | AT5G19670 | 45.349 | 258 | 133 | 3 | 13 | 265 | 350 | 604 | 1.73e-79 | 251 |
| MsG0380016001.01.T01 | AT5G19670 | 45.349 | 258 | 133 | 3 | 13 | 265 | 350 | 604 | 1.73e-79 | 251 |
| MsG0380016001.01.T01 | AT4G16745 | 50.000 | 240 | 113 | 4 | 21 | 253 | 277 | 516 | 1.37e-78 | 249 |
| MsG0380016001.01.T01 | AT5G37000 | 43.369 | 279 | 137 | 4 | 5 | 265 | 273 | 548 | 8.39e-76 | 240 |
| MsG0380016001.01.T01 | AT5G25820 | 46.875 | 256 | 125 | 6 | 17 | 265 | 398 | 649 | 3.38e-73 | 236 |
| MsG0380016001.01.T01 | AT5G11610 | 42.460 | 252 | 138 | 5 | 17 | 265 | 295 | 542 | 6.55e-70 | 225 |
| MsG0380016001.01.T01 | AT4G38040 | 36.992 | 246 | 149 | 2 | 21 | 263 | 177 | 419 | 7.03e-53 | 177 |
| MsG0380016001.01.T01 | AT4G38040 | 35.135 | 222 | 138 | 2 | 21 | 239 | 177 | 395 | 5.69e-41 | 146 |
| MsG0380016001.01.T01 | AT5G11610 | 38.608 | 158 | 91 | 4 | 17 | 172 | 295 | 448 | 2.57e-33 | 126 |
| MsG0380016001.01.T01 | AT1G27440 | 27.444 | 266 | 171 | 7 | 19 | 265 | 122 | 384 | 4.14e-27 | 108 |
| MsG0380016001.01.T01 | AT5G61840 | 26.568 | 271 | 167 | 7 | 19 | 265 | 125 | 387 | 6.40e-25 | 102 |
| MsG0380016001.01.T01 | AT2G28110 | 26.471 | 272 | 175 | 8 | 21 | 270 | 174 | 442 | 8.05e-21 | 91.7 |
| MsG0380016001.01.T01 | AT1G67410 | 29.412 | 238 | 148 | 9 | 34 | 256 | 170 | 402 | 5.17e-19 | 86.3 |
| MsG0380016001.01.T01 | AT5G22940 | 25.092 | 271 | 172 | 8 | 21 | 266 | 188 | 452 | 8.05e-19 | 85.9 |
| MsG0380016001.01.T01 | AT5G22940 | 25.092 | 271 | 172 | 8 | 21 | 266 | 217 | 481 | 9.01e-19 | 85.9 |
| MsG0380016001.01.T01 | AT1G74680 | 30.342 | 234 | 145 | 7 | 35 | 256 | 201 | 428 | 1.62e-17 | 82.0 |
| MsG0380016001.01.T01 | AT2G35100 | 26.295 | 251 | 152 | 10 | 34 | 265 | 179 | 415 | 5.06e-17 | 80.9 |
| MsG0380016001.01.T01 | AT3G45400 | 29.218 | 243 | 143 | 9 | 35 | 260 | 206 | 436 | 1.55e-16 | 79.3 |
| MsG0380016001.01.T01 | AT3G03650 | 30.612 | 245 | 138 | 12 | 35 | 261 | 245 | 475 | 3.44e-15 | 75.5 |
| MsG0380016001.01.T01 | AT5G16890 | 26.840 | 231 | 146 | 9 | 35 | 248 | 230 | 454 | 3.91e-15 | 75.5 |
| MsG0380016001.01.T01 | AT1G34270 | 28.814 | 236 | 138 | 10 | 35 | 245 | 195 | 425 | 2.80e-12 | 66.6 |
| MsG0380016001.01.T01 | AT5G44930 | 26.432 | 227 | 133 | 10 | 34 | 241 | 175 | 386 | 4.04e-12 | 66.2 |
| MsG0380016001.01.T01 | AT5G44930 | 26.432 | 227 | 133 | 10 | 34 | 241 | 175 | 386 | 4.04e-12 | 66.2 |
Find 45 sgRNAs with CRISPR-Local
Find 61 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGTTACCAAATTGATTTC+AGG | 0.158016 | 3:-77736420 | None:intergenic |
| AACATGGAACAGAACAATTT+TGG | 0.172114 | 3:+77736473 | MsG0380016001.01.T01:CDS |
| TATCACACAAATATGCTTAT+TGG | 0.232545 | 3:+77736149 | MsG0380016001.01.T01:CDS |
| ATCATTTCCTGAAATCAATT+TGG | 0.239355 | 3:+77736413 | MsG0380016001.01.T01:CDS |
| CCTGAAATCAATTTGGTAAC+AGG | 0.246714 | 3:+77736420 | MsG0380016001.01.T01:CDS |
| GGAAATGATGCATCTTTCTT+TGG | 0.250368 | 3:-77736399 | None:intergenic |
| TATTAGTGACAAAGCTGTTT+TGG | 0.252682 | 3:+77736096 | MsG0380016001.01.T01:CDS |
| ATATGATAGTTCATTCTATA+TGG | 0.268939 | 3:+77736919 | MsG0380016001.01.T01:CDS |
| TATTGTTGTGATATTATAAT+AGG | 0.275605 | 3:-77736705 | None:intergenic |
| TACTCATCTTCATTGTTTCA+TGG | 0.291583 | 3:-77736608 | None:intergenic |
| ACAGCTTTGTCACTAATAAC+TGG | 0.291871 | 3:-77736091 | None:intergenic |
| TCATGCTTTCTTGTCATGAT+TGG | 0.298264 | 3:+77736197 | MsG0380016001.01.T01:CDS |
| TAAATAGCCTCAACAATTCT+TGG | 0.302318 | 3:-77736669 | None:intergenic |
| CATGCTTTCTTGTCATGATT+GGG | 0.337722 | 3:+77736198 | MsG0380016001.01.T01:CDS |
| AACAAAATTTCCTTAAGCTT+GGG | 0.346625 | 3:-77736795 | None:intergenic |
| TAGTGAAATTCCCAAGCTTA+AGG | 0.365820 | 3:+77736785 | MsG0380016001.01.T01:CDS |
| TGGAATACATCATATCTCTT+AGG | 0.369121 | 3:-77736897 | None:intergenic |
| CAACAAAATTTCCTTAAGCT+TGG | 0.385217 | 3:-77736796 | None:intergenic |
| CAATTAAGAACATCACTAAA+AGG | 0.388451 | 3:-77736735 | None:intergenic |
| TTCACATACCATGTTGCCCT+TGG | 0.411752 | 3:-77736315 | None:intergenic |
| TGTCTTTGTTCTTCCAATGT+TGG | 0.425371 | 3:-77736542 | None:intergenic |
| GCTTATTGGAATAGAAGTTA+TGG | 0.446862 | 3:+77736163 | MsG0380016001.01.T01:CDS |
| CATGACAAGAAAGCATGAAA+TGG | 0.462671 | 3:-77736192 | None:intergenic |
| CTTGCCACTTCCCACCCACT+TGG | 0.464582 | 3:-77736645 | None:intergenic |
| TTGGTAACAGGAGAAACAAC+AGG | 0.474598 | 3:+77736432 | MsG0380016001.01.T01:CDS |
| TAGTTCATTCTATATGGCTT+AGG | 0.476523 | 3:+77736925 | MsG0380016001.01.T01:CDS |
| ATATAGAATGAACTATCATA+TGG | 0.498766 | 3:-77736917 | None:intergenic |
| GGAGAAACAACAGGTTTACT+TGG | 0.502236 | 3:+77736441 | MsG0380016001.01.T01:CDS |
| AAAATTGTTCTGTTCCATGT+TGG | 0.510175 | 3:-77736471 | None:intergenic |
| TTGTCCAAGTGGGTGGGAAG+TGG | 0.510845 | 3:+77736641 | MsG0380016001.01.T01:CDS |
| ATTGTATTTGTCCAAGTGGG+TGG | 0.518103 | 3:+77736634 | MsG0380016001.01.T01:CDS |
| AATACATCATATCTCTTAGG+AGG | 0.557887 | 3:-77736894 | None:intergenic |
| TTCCAATGTTGGAAAAGCAA+TGG | 0.557955 | 3:-77736531 | None:intergenic |
| TACTTGGTGGCTATCCAACA+TGG | 0.562509 | 3:+77736457 | MsG0380016001.01.T01:CDS |
| GAAACAACAGGTTTACTTGG+TGG | 0.562533 | 3:+77736444 | MsG0380016001.01.T01:CDS |
| CAGCTTTGTCACTAATAACT+GGG | 0.562964 | 3:-77736090 | None:intergenic |
| AAAATATATAAGATTGCAAG+AGG | 0.564360 | 3:+77736833 | MsG0380016001.01.T01:CDS |
| TTGTATTTGTCCAAGTGGGT+GGG | 0.588230 | 3:+77736635 | MsG0380016001.01.T01:CDS |
| CATAGGGACCAAGGGCAACA+TGG | 0.588439 | 3:+77736307 | MsG0380016001.01.T01:intron |
| AATATTGTATTTGTCCAAGT+GGG | 0.593695 | 3:+77736631 | MsG0380016001.01.T01:CDS |
| TTCTTTGCAGGACAAATGCA+TGG | 0.604295 | 3:+77736498 | MsG0380016001.01.T01:CDS |
| AAATATTGTATTTGTCCAAG+TGG | 0.615905 | 3:+77736630 | MsG0380016001.01.T01:CDS |
| GGCAAGTCCAAGAATTGTTG+AGG | 0.622767 | 3:+77736662 | MsG0380016001.01.T01:CDS |
| AAGGGCAACATGGTATGTGA+AGG | 0.631000 | 3:+77736317 | MsG0380016001.01.T01:CDS |
| AAATATATAAGATTGCAAGA+GGG | 0.682335 | 3:+77736834 | MsG0380016001.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATATTTCATGAAAA+TGG | + | Chr3:77736277-77736296 | MsG0380016001.01.T01:intron | 10.0% |
| !! | TATTGTTGTGATATTATAAT+AGG | - | Chr3:77736708-77736727 | None:intergenic | 15.0% |
| !! | AAAATATATAAGATTGCAAG+AGG | + | Chr3:77736833-77736852 | MsG0380016001.01.T01:CDS | 20.0% |
| !! | AAATATATAAGATTGCAAGA+GGG | + | Chr3:77736834-77736853 | MsG0380016001.01.T01:CDS | 20.0% |
| !! | ATATAGAATGAACTATCATA+TGG | - | Chr3:77736920-77736939 | None:intergenic | 20.0% |
| !! | ATATGATAGTTCATTCTATA+TGG | + | Chr3:77736919-77736938 | MsG0380016001.01.T01:CDS | 20.0% |
| !!! | TTTTAGTGATGTTCTTAATT+GGG | + | Chr3:77736737-77736756 | MsG0380016001.01.T01:CDS | 20.0% |
| ! | AAATATTGTATTTGTCCAAG+TGG | + | Chr3:77736630-77736649 | MsG0380016001.01.T01:CDS | 25.0% |
| ! | AACAAAATTTCCTTAAGCTT+GGG | - | Chr3:77736798-77736817 | None:intergenic | 25.0% |
| ! | AATATTGTATTTGTCCAAGT+GGG | + | Chr3:77736631-77736650 | MsG0380016001.01.T01:CDS | 25.0% |
| ! | ATCATTTCCTGAAATCAATT+TGG | + | Chr3:77736413-77736432 | MsG0380016001.01.T01:CDS | 25.0% |
| ! | CAATTAAGAACATCACTAAA+AGG | - | Chr3:77736738-77736757 | None:intergenic | 25.0% |
| ! | TATCACACAAATATGCTTAT+TGG | + | Chr3:77736149-77736168 | MsG0380016001.01.T01:CDS | 25.0% |
| !! | AAGCTTAAGGAAATTTTGTT+GGG | + | Chr3:77736798-77736817 | MsG0380016001.01.T01:CDS | 25.0% |
| !! | CTTTTAGTGATGTTCTTAAT+TGG | + | Chr3:77736736-77736755 | MsG0380016001.01.T01:CDS | 25.0% |
| !!! | TCATGGTATGAAATTTTTTC+TGG | - | Chr3:77736594-77736613 | None:intergenic | 25.0% |
| AAAATTGTTCTGTTCCATGT+TGG | - | Chr3:77736474-77736493 | None:intergenic | 30.0% | |
| AATACATCATATCTCTTAGG+AGG | - | Chr3:77736897-77736916 | None:intergenic | 30.0% | |
| CAACAAAATTTCCTTAAGCT+TGG | - | Chr3:77736799-77736818 | None:intergenic | 30.0% | |
| CATACTCGCACTATAATTAT+CGG | - | Chr3:77736245-77736264 | None:intergenic | 30.0% | |
| GCTTATTGGAATAGAAGTTA+TGG | + | Chr3:77736163-77736182 | MsG0380016001.01.T01:CDS | 30.0% | |
| TAAATAGCCTCAACAATTCT+TGG | - | Chr3:77736672-77736691 | None:intergenic | 30.0% | |
| TACTCATCTTCATTGTTTCA+TGG | - | Chr3:77736611-77736630 | None:intergenic | 30.0% | |
| TAGTTCATTCTATATGGCTT+AGG | + | Chr3:77736925-77736944 | MsG0380016001.01.T01:CDS | 30.0% | |
| TGGAATACATCATATCTCTT+AGG | - | Chr3:77736900-77736919 | None:intergenic | 30.0% | |
| ! | AACATGGAACAGAACAATTT+TGG | + | Chr3:77736473-77736492 | MsG0380016001.01.T01:CDS | 30.0% |
| ! | CAAGCTTAAGGAAATTTTGT+TGG | + | Chr3:77736797-77736816 | MsG0380016001.01.T01:CDS | 30.0% |
| ! | TATTAGTGACAAAGCTGTTT+TGG | + | Chr3:77736096-77736115 | MsG0380016001.01.T01:CDS | 30.0% |
| !! | ATTAGTGACAAAGCTGTTTT+GGG | + | Chr3:77736097-77736116 | MsG0380016001.01.T01:CDS | 30.0% |
| !!! | ATGAAAATGGTTTTGTGCAT+AGG | + | Chr3:77736290-77736309 | MsG0380016001.01.T01:intron | 30.0% |
| !!! | TGAAAATGGTTTTGTGCATA+GGG | + | Chr3:77736291-77736310 | MsG0380016001.01.T01:intron | 30.0% |
| CATGCTTTCTTGTCATGATT+GGG | + | Chr3:77736198-77736217 | MsG0380016001.01.T01:CDS | 35.0% | |
| GGAAATGATGCATCTTTCTT+TGG | - | Chr3:77736402-77736421 | None:intergenic | 35.0% | |
| TAGTGAAATTCCCAAGCTTA+AGG | + | Chr3:77736785-77736804 | MsG0380016001.01.T01:CDS | 35.0% | |
| TCATGCTTTCTTGTCATGAT+TGG | + | Chr3:77736197-77736216 | MsG0380016001.01.T01:CDS | 35.0% | |
| TGTCTTTGTTCTTCCAATGT+TGG | - | Chr3:77736545-77736564 | None:intergenic | 35.0% | |
| TTCCAATGTTGGAAAAGCAA+TGG | - | Chr3:77736534-77736553 | None:intergenic | 35.0% | |
| ! | AATTTTGTTGGGTATCTCTG+AGG | + | Chr3:77736809-77736828 | MsG0380016001.01.T01:CDS | 35.0% |
| ! | ACAGCTTTGTCACTAATAAC+TGG | - | Chr3:77736094-77736113 | None:intergenic | 35.0% |
| ! | CAGCTTTGTCACTAATAACT+GGG | - | Chr3:77736093-77736112 | None:intergenic | 35.0% |
| ! | CATGACAAGAAAGCATGAAA+TGG | - | Chr3:77736195-77736214 | None:intergenic | 35.0% |
| ! | CCTGAAATCAATTTGGTAAC+AGG | + | Chr3:77736420-77736439 | MsG0380016001.01.T01:CDS | 35.0% |
| ! | CCTGTTACCAAATTGATTTC+AGG | - | Chr3:77736423-77736442 | None:intergenic | 35.0% |
| !!! | ACAATTTTGGCTTTCTTTGC+AGG | + | Chr3:77736486-77736505 | MsG0380016001.01.T01:CDS | 35.0% |
| ATTGTATTTGTCCAAGTGGG+TGG | + | Chr3:77736634-77736653 | MsG0380016001.01.T01:CDS | 40.0% | |
| GAAACAACAGGTTTACTTGG+TGG | + | Chr3:77736444-77736463 | MsG0380016001.01.T01:CDS | 40.0% | |
| GGAGAAACAACAGGTTTACT+TGG | + | Chr3:77736441-77736460 | MsG0380016001.01.T01:CDS | 40.0% | |
| TTCTTTGCAGGACAAATGCA+TGG | + | Chr3:77736498-77736517 | MsG0380016001.01.T01:CDS | 40.0% | |
| TTGTATTTGTCCAAGTGGGT+GGG | + | Chr3:77736635-77736654 | MsG0380016001.01.T01:CDS | 40.0% | |
| ! | TTGGTAACAGGAGAAACAAC+AGG | + | Chr3:77736432-77736451 | MsG0380016001.01.T01:CDS | 40.0% |
| !! | GACCATTGCTTTTCCAACAT+TGG | + | Chr3:77736529-77736548 | MsG0380016001.01.T01:CDS | 40.0% |
| !!! | GCTGTTTTGGGAAGAACTAT+TGG | + | Chr3:77736109-77736128 | MsG0380016001.01.T01:CDS | 40.0% |
| AAGGGCAACATGGTATGTGA+AGG | + | Chr3:77736317-77736336 | MsG0380016001.01.T01:CDS | 45.0% | |
| GGCAAGTCCAAGAATTGTTG+AGG | + | Chr3:77736662-77736681 | MsG0380016001.01.T01:CDS | 45.0% | |
| TTCACATACCATGTTGCCCT+TGG | - | Chr3:77736318-77736337 | None:intergenic | 45.0% | |
| ! | GTTTTGTGCATAGGGACCAA+GGG | + | Chr3:77736299-77736318 | MsG0380016001.01.T01:intron | 45.0% |
| ! | TACTTGGTGGCTATCCAACA+TGG | + | Chr3:77736457-77736476 | MsG0380016001.01.T01:CDS | 45.0% |
| !! | GGTTTTGTGCATAGGGACCA+AGG | + | Chr3:77736298-77736317 | MsG0380016001.01.T01:intron | 50.0% |
| CATAGGGACCAAGGGCAACA+TGG | + | Chr3:77736307-77736326 | MsG0380016001.01.T01:intron | 55.0% | |
| TTGTCCAAGTGGGTGGGAAG+TGG | + | Chr3:77736641-77736660 | MsG0380016001.01.T01:CDS | 55.0% | |
| ! | CTTGCCACTTCCCACCCACT+TGG | - | Chr3:77736648-77736667 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 77736067 | 77736971 | 77736067 | ID=MsG0380016001.01;Name=MsG0380016001.01 |
| Chr3 | mRNA | 77736067 | 77736971 | 77736067 | ID=MsG0380016001.01.T01;Parent=MsG0380016001.01;Name=MsG0380016001.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|270 |
| Chr3 | exon | 77736067 | 77736219 | 77736067 | ID=MsG0380016001.01.T01:exon:14635;Parent=MsG0380016001.01.T01 |
| Chr3 | exon | 77736312 | 77736971 | 77736312 | ID=MsG0380016001.01.T01:exon:14636;Parent=MsG0380016001.01.T01 |
| Chr3 | CDS | 77736067 | 77736219 | 77736067 | ID=MsG0380016001.01.T01:cds;Parent=MsG0380016001.01.T01 |
| Chr3 | CDS | 77736312 | 77736971 | 77736312 | ID=MsG0380016001.01.T01:cds;Parent=MsG0380016001.01.T01 |
| Gene Sequence |
| Protein sequence |
