AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039975.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039975.01.T01 MTR_7g082660 97.152 632 16 1 50 681 1 630 0.0 1206
MsG0780039975.01.T01 MTR_3g060660 28.013 639 407 13 61 678 31 637 4.65e-24 107
MsG0780039975.01.T01 MTR_3g060660 28.859 596 374 12 106 678 58 626 3.38e-23 105
MsG0780039975.01.T01 MTR_5g096080 27.259 653 400 18 60 676 29 642 1.14e-14 78.2
MsG0780039975.01.T01 MTR_3g007920 27.412 653 399 18 60 676 29 642 6.61e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039975.01.T01 AT1G66840 39.899 594 327 9 101 681 30 606 1.42e-96 310
MsG0780039975.01.T01 AT1G66840 39.899 594 327 9 101 681 30 606 1.42e-96 310
MsG0780039975.01.T01 AT5G38150 39.336 572 311 9 107 671 33 575 8.01e-84 276
MsG0780039975.01.T01 AT5G55860 27.328 655 391 16 61 678 29 635 1.66e-21 99.8
MsG0780039975.01.T01 AT2G26570 26.243 503 326 11 106 579 204 690 8.64e-13 72.4
MsG0780039975.01.T01 AT2G26570 26.243 503 326 11 106 579 204 690 8.64e-13 72.4

Find 95 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGAATAACTTTGCCAAATT+TGG 0.040291 7:-71350838 None:intergenic
AAAGAAAGTTATTCCAAATT+TGG 0.158348 7:+71350825 MsG0780039975.01.T01:CDS
CGCCTCAAGTTCCTCCTTTA+CGG 0.197031 7:-71349915 None:intergenic
TAGATACTCATATTCAAATT+TGG 0.197756 7:-71350431 None:intergenic
AAAATTGATGCTTACATTAG+AGG 0.234950 7:+71347849 MsG0780039975.01.T01:CDS
GTTGCAGATTCAATTGAATT+TGG 0.253403 7:+71349790 MsG0780039975.01.T01:CDS
AGAAACAGATGAAGCTAAAA+TGG 0.255073 7:+71350186 MsG0780039975.01.T01:CDS
TGATGCTTCCATTTCTTTCT+CGG 0.288847 7:-71349498 None:intergenic
AGTTCTCTTGTTCTTGAAGT+AGG 0.315905 7:-71349143 None:intergenic
TGTTAAAGCTCTTTCTTTCA+TGG 0.315991 7:-71350380 None:intergenic
ATTGAATTTGGTCAAAGAAA+TGG 0.316878 7:+71349802 MsG0780039975.01.T01:CDS
CCAAATTTGGCAAAGTTATT+CGG 0.321021 7:+71350838 MsG0780039975.01.T01:CDS
TTCTGCTGCAGCTGCATGAT+TGG 0.331292 7:-71350455 None:intergenic
AAATGAGTTCTCATTCAAAT+TGG 0.332919 7:+71349670 MsG0780039975.01.T01:CDS
AAGAAGATATGAAACTCTTA+TGG 0.337756 7:-71351191 None:intergenic
AACAACTGAAGCTTTAGCTT+TGG 0.339949 7:+71350330 MsG0780039975.01.T01:CDS
GGACTAATGTGCCGAGTTGC+AGG 0.340914 7:-71350784 None:intergenic
AGCAAGTACTTGTTCTTCAT+TGG 0.359144 7:-71349582 None:intergenic
AGAATTGGAATATCTCAAAA+AGG 0.374578 7:+71349421 MsG0780039975.01.T01:CDS
AGAACAAGTACTTGCTGAAT+TGG 0.382678 7:+71349589 MsG0780039975.01.T01:CDS
TTAAGAAAGGGTGACGAATC+AGG 0.386265 7:+71349872 MsG0780039975.01.T01:CDS
AGGTGCAAACTCTGATGAAT+CGG 0.415738 7:+71347886 MsG0780039975.01.T01:CDS
CATAGAAACATTAGAGAAGA+AGG 0.416171 7:+71349331 MsG0780039975.01.T01:CDS
AGAAAGAGTATTAAATCAAA+TGG 0.421669 7:+71350712 MsG0780039975.01.T01:CDS
TGGTCAAAGAAATGGAGAAA+AGG 0.424730 7:+71349810 MsG0780039975.01.T01:CDS
CTCCTTTACGGTTTGTAACT+CGG 0.426077 7:-71349903 None:intergenic
AGATGAAAGTGTGAAACTAT+TGG 0.426555 7:+71349841 MsG0780039975.01.T01:CDS
GTTCTCTTGTTCTTGAAGTA+GGG 0.431248 7:-71349142 None:intergenic
GAAGGTACAAAGAGAGTAGA+TGG 0.434441 7:+71349189 MsG0780039975.01.T01:CDS
TTATTAGTCTATATGATGAT+AGG 0.440282 7:+71348823 MsG0780039975.01.T01:CDS
TTCCAATGTCTCTTCTAGCT+TGG 0.442664 7:-71349169 None:intergenic
TGCACAAGTGATGAGAGAAT+TGG 0.443791 7:+71349406 MsG0780039975.01.T01:CDS
TTAGCTTTGATTAGAGATGA+AGG 0.446414 7:+71349950 MsG0780039975.01.T01:CDS
GGTCAAAGAAATGGAGAAAA+GGG 0.450694 7:+71349811 MsG0780039975.01.T01:CDS
TATATGATGATAGGAATCAT+AGG 0.453671 7:+71348832 MsG0780039975.01.T01:CDS
AAAAGAAGAAGTACTTAGAA+AGG 0.456072 7:+71349547 MsG0780039975.01.T01:CDS
AGATATTATAACAACTAAGT+TGG 0.460017 7:+71350228 MsG0780039975.01.T01:CDS
ATTGGAAGGAAGTTTAAGAA+AGG 0.468539 7:+71349859 MsG0780039975.01.T01:CDS
TTTCTCTTCTTAAGAGTGAA+AGG 0.481141 7:-71350805 None:intergenic
AAATCTCTCTTCTATGATTG+AGG 0.483933 7:+71349274 MsG0780039975.01.T01:CDS
TTCATTGAAGAAAACTCAGA+TGG 0.484456 7:+71348875 MsG0780039975.01.T01:CDS
GCGTGACCCTATATATGATC+TGG 0.487872 7:+71347760 None:intergenic
CTCTTTCAAAGCTTCAATCC+TGG 0.488651 7:-71349612 None:intergenic
GAAATGGAGAAAAGGGTTCA+AGG 0.496156 7:+71349818 MsG0780039975.01.T01:CDS
GATTGAAGCTTTGAAAGAGT+TGG 0.497137 7:+71349616 MsG0780039975.01.T01:CDS
AAGTACTTGCTGAATTGGCC+AGG 0.505239 7:+71349594 MsG0780039975.01.T01:CDS
TGAAGCTTTGAAAGAGTTGG+AGG 0.507795 7:+71349619 MsG0780039975.01.T01:CDS
TTGGAAGGAAGTTTAAGAAA+GGG 0.508282 7:+71349860 MsG0780039975.01.T01:CDS
ATCGCGGGCCGAGAAAGAAA+TGG 0.508474 7:+71349490 MsG0780039975.01.T01:CDS
TGAGCTGAAGCATGTAACTA+AGG 0.508606 7:+71350009 MsG0780039975.01.T01:CDS
ACATTAGAGAAGAAGGGAAA+AGG 0.510519 7:+71349338 MsG0780039975.01.T01:CDS
AAGATGGATGATACTAAAGT+TGG 0.511606 7:+71348771 MsG0780039975.01.T01:CDS
GAGCGAGAAGGAAATACTAC+TGG 0.513052 7:+71350534 MsG0780039975.01.T01:CDS
AACATGGTGCTATAGTTGTA+AGG 0.527263 7:+71349363 MsG0780039975.01.T01:CDS
GGTTCAAAATCTCAATTCAA+AGG 0.530696 7:+71350063 MsG0780039975.01.T01:CDS
AAGTTGCGGCAGCTGAGGCA+TGG 0.536231 7:+71350494 MsG0780039975.01.T01:CDS
ATAAAGTTAGTTATATCAGC+TGG 0.538749 7:-71350965 None:intergenic
AATAGTTCAAAGAGAACTCA+AGG 0.539801 7:+71350564 MsG0780039975.01.T01:CDS
CAATGAAGTTCTATTTGCCA+AGG 0.542939 7:-71351018 None:intergenic
CACCAAGCTAGAAGAGACAT+TGG 0.548216 7:+71349167 MsG0780039975.01.T01:CDS
GGTGCAAACTCTGATGAATC+GGG 0.548542 7:+71347887 MsG0780039975.01.T01:CDS
CAAAGCTAAGGCGAAAATGA+AGG 0.549569 7:+71349307 MsG0780039975.01.T01:CDS
GCAAGGCGTTATGAAAGAGT+TGG 0.550969 7:+71350297 MsG0780039975.01.T01:CDS
GGTTTACATCAAAGAGAAGA+TGG 0.551787 7:+71350612 MsG0780039975.01.T01:CDS
TAGAGGATTGCAATTCAAGA+AGG 0.558248 7:+71347866 MsG0780039975.01.T01:CDS
TGATTTGTCTATCTCTTCCG+TGG 0.565283 7:-71349720 None:intergenic
GGAATCAAGTTACAAAGCTA+AGG 0.568567 7:+71349295 MsG0780039975.01.T01:CDS
ATATCTAATATGCAAGGTGA+AGG 0.569278 7:+71350986 MsG0780039975.01.T01:three_prime_UTR
AAAATGTTACTGTATAAATG+TGG 0.571036 7:-71351134 None:intergenic
TAAGGAGTTGTTGAACAGAT+CGG 0.574136 7:-71347818 None:intergenic
TAGACTGGAATTTAAAACAA+TGG 0.575908 7:-71350900 None:intergenic
GGCATGGATTGAAGCGCTCA+AGG 0.579700 7:+71350510 MsG0780039975.01.T01:CDS
TACCGAGTTACAAACCGTAA+AGG 0.586528 7:+71349901 MsG0780039975.01.T01:CDS
AGAAGCCGCATCTGCTGCAG+AGG 0.589655 7:+71350108 MsG0780039975.01.T01:CDS
ATAGAAACATTAGAGAAGAA+GGG 0.594229 7:+71349332 MsG0780039975.01.T01:CDS
GAAAGTGTGAAACTATTGGA+AGG 0.594809 7:+71349845 MsG0780039975.01.T01:CDS
TATATATGATCTGGAAGGAG+AGG 0.600065 7:+71347769 None:intergenic
TTGTGCATATGATTGTAGAC+TGG 0.601537 7:-71350915 None:intergenic
AACTTTATATCTAATATGCA+AGG 0.610297 7:+71350980 MsG0780039975.01.T01:three_prime_UTR
GTTTAAGCTAAAGCTTGACG+TGG 0.614923 7:+71349448 MsG0780039975.01.T01:CDS
AACCGTAAAGGAGGAACTTG+AGG 0.624780 7:+71349913 MsG0780039975.01.T01:CDS
GGAAGAGATAGACAAATCAA+AGG 0.630376 7:+71349724 MsG0780039975.01.T01:CDS
CTGCTGCTTCACCTGCAACT+CGG 0.636241 7:+71350773 MsG0780039975.01.T01:CDS
CGTAAAGGAGGAACTTGAGG+CGG 0.638927 7:+71349916 MsG0780039975.01.T01:CDS
AAGCTAGAAGAGACATTGGA+AGG 0.645006 7:+71349171 MsG0780039975.01.T01:CDS
CGAGTTACAAACCGTAAAGG+AGG 0.647932 7:+71349904 MsG0780039975.01.T01:CDS
ATTTGAGATTGATACGAGTG+AGG 0.648413 7:+71350267 MsG0780039975.01.T01:CDS
AGCGCTCAAGGCGAGCGAGA+AGG 0.649761 7:+71350522 MsG0780039975.01.T01:CDS
GACCCTATATATGATCTGGA+AGG 0.650363 7:+71347764 None:intergenic
AACTCAGATGGATTTCGCAG+CGG 0.658178 7:+71348887 MsG0780039975.01.T01:CDS
AAGAAGGGAAAAGGTCAACA+TGG 0.660376 7:+71349347 MsG0780039975.01.T01:CDS
TAACAGCAGAGAAAAGAGTG+AGG 0.669271 7:+71351049 MsG0780039975.01.T01:three_prime_UTR
ATGGTGCTATAGTTGTAAGG+AGG 0.689249 7:+71349366 MsG0780039975.01.T01:CDS
TTTCGCAGCGGATTTCTCAG+CGG 0.728630 7:+71348899 MsG0780039975.01.T01:CDS
TGCAAGAAGAGTTAGCAGTG+AGG 0.733527 7:+71350636 MsG0780039975.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAATTAATTCATTTATTTA+TGG - Chr7:71348122-71348141 None:intergenic 10.0%
!! ACATGAAAAATAAAAATATG+TGG - Chr7:71348531-71348550 None:intergenic 15.0%
!! TCTTTGAACTTAAAAATAAT+TGG + Chr7:71351210-71351229 MsG0780039975.01.T01:three_prime_UTR 15.0%
!!! AAAGTTATCTCTTTTTTTTT+TGG + Chr7:71348021-71348040 MsG0780039975.01.T01:intron 15.0%
!! AAAATGTTACTGTATAAATG+TGG - Chr7:71351137-71351156 None:intergenic 20.0%
!! AAACACAAGAAAAAAGTTAA+AGG + Chr7:71349694-71349713 MsG0780039975.01.T01:CDS 20.0%
!! AAAGAAAGTTATTCCAAATT+TGG + Chr7:71350825-71350844 MsG0780039975.01.T01:CDS 20.0%
!! AAATTGAAAGATGAGAAAAT+TGG + Chr7:71348352-71348371 MsG0780039975.01.T01:intron 20.0%
!! AACAGTGATAAATAATATAG+AGG - Chr7:71348602-71348621 None:intergenic 20.0%
!! AACTTTATATCTAATATGCA+AGG + Chr7:71350980-71350999 MsG0780039975.01.T01:three_prime_UTR 20.0%
!! AATTGAAAGATGAGAAAATT+GGG + Chr7:71348353-71348372 MsG0780039975.01.T01:intron 20.0%
!! AGATATTATAACAACTAAGT+TGG + Chr7:71350228-71350247 MsG0780039975.01.T01:CDS 20.0%
!! TAGATACTCATATTCAAATT+TGG - Chr7:71350434-71350453 None:intergenic 20.0%
!! TTGTATATGCATTATTATTG+TGG + Chr7:71349056-71349075 MsG0780039975.01.T01:intron 20.0%
!!! AGAAAGAGTATTAAATCAAA+TGG + Chr7:71350712-71350731 MsG0780039975.01.T01:CDS 20.0%
!!! CTATCTTTTGTTATAGAAAT+AGG + Chr7:71348982-71349001 MsG0780039975.01.T01:intron 20.0%
!!! TATACAGTAACATTTTCTAT+TGG + Chr7:71351141-71351160 MsG0780039975.01.T01:three_prime_UTR 20.0%
!!! TTATTAGTCTATATGATGAT+AGG + Chr7:71348823-71348842 MsG0780039975.01.T01:CDS 20.0%
!!! TTTGTTATAGAAATAGGTTA+TGG + Chr7:71348988-71349007 MsG0780039975.01.T01:intron 20.0%
! AAAATTGATGCTTACATTAG+AGG + Chr7:71347849-71347868 MsG0780039975.01.T01:CDS 25.0%
! AAATGAGTTCTCATTCAAAT+TGG + Chr7:71349670-71349689 MsG0780039975.01.T01:CDS 25.0%
! AAGAAGATATGAAACTCTTA+TGG - Chr7:71351194-71351213 None:intergenic 25.0%
! AGAATTGGAATATCTCAAAA+AGG + Chr7:71349421-71349440 MsG0780039975.01.T01:CDS 25.0%
! ATAAAGTTAGTTATATCAGC+TGG - Chr7:71350968-71350987 None:intergenic 25.0%
! ATAGAAACATTAGAGAAGAA+GGG + Chr7:71349332-71349351 MsG0780039975.01.T01:CDS 25.0%
! ATTGAATTTGGTCAAAGAAA+TGG + Chr7:71349802-71349821 MsG0780039975.01.T01:CDS 25.0%
! TATATGATGATAGGAATCAT+AGG + Chr7:71348832-71348851 MsG0780039975.01.T01:CDS 25.0%
!! AGTGAATTTAAAACCAAAAG+TGG + Chr7:71348319-71348338 MsG0780039975.01.T01:intron 25.0%
!! TAAATTCATTCCTTCAGTTT+TGG + Chr7:71348745-71348764 MsG0780039975.01.T01:intron 25.0%
!! TAGACTGGAATTTAAAACAA+TGG - Chr7:71350903-71350922 None:intergenic 25.0%
!! TCATCTTTCAATTTTTGCTT+AGG - Chr7:71348346-71348365 None:intergenic 25.0%
!! TGAAACTTAATTCTTTTAGC+AGG - Chr7:71350748-71350767 None:intergenic 25.0%
!!! AAAAGAAGAAGTACTTAGAA+AGG + Chr7:71349547-71349566 MsG0780039975.01.T01:CDS 25.0%
!!! AATACATGGTGATTGTTTTT+AGG + Chr7:71348689-71348708 MsG0780039975.01.T01:intron 25.0%
!!! CATCAATTTTGATTTGGTTA+AGG - Chr7:71347839-71347858 None:intergenic 25.0%
!!! TGTAAGCATCAATTTTGATT+TGG - Chr7:71347845-71347864 None:intergenic 25.0%
AAATCTCTCTTCTATGATTG+AGG + Chr7:71349274-71349293 MsG0780039975.01.T01:CDS 30.0%
AAGATGGATGATACTAAAGT+TGG + Chr7:71348771-71348790 MsG0780039975.01.T01:CDS 30.0%
AATAGTTCAAAGAGAACTCA+AGG + Chr7:71350564-71350583 MsG0780039975.01.T01:CDS 30.0%
AATCCTTCACAAATAAGTGA+AGG - Chr7:71348185-71348204 None:intergenic 30.0%
ACAGAAAATTAGATAGTGAC+AGG + Chr7:71348405-71348424 MsG0780039975.01.T01:intron 30.0%
AGAAACAGATGAAGCTAAAA+TGG + Chr7:71350186-71350205 MsG0780039975.01.T01:CDS 30.0%
ATATCTAATATGCAAGGTGA+AGG + Chr7:71350986-71351005 MsG0780039975.01.T01:three_prime_UTR 30.0%
ATATTGTGATTGTGCGATAT+CGG + Chr7:71348158-71348177 MsG0780039975.01.T01:intron 30.0%
ATTGGAAGGAAGTTTAAGAA+AGG + Chr7:71349859-71349878 MsG0780039975.01.T01:CDS 30.0%
CACAAGAAAAAAGTTAAAGG+AGG + Chr7:71349697-71349716 MsG0780039975.01.T01:CDS 30.0%
CACAGTTATTACAAACTACA+TGG - Chr7:71347991-71348010 None:intergenic 30.0%
CATAGAAACATTAGAGAAGA+AGG + Chr7:71349331-71349350 MsG0780039975.01.T01:CDS 30.0%
CCAAATTTGGCAAAGTTATT+CGG + Chr7:71350838-71350857 MsG0780039975.01.T01:CDS 30.0%
CGCACAATCACAATATTAAA+GGG - Chr7:71348154-71348173 None:intergenic 30.0%
GCACAATCACAATATTAAAG+GGG - Chr7:71348153-71348172 None:intergenic 30.0%
GGTTCAAAATCTCAATTCAA+AGG + Chr7:71350063-71350082 MsG0780039975.01.T01:CDS 30.0%
GTGTTGAATATGCTAATACA+TGG + Chr7:71348675-71348694 MsG0780039975.01.T01:intron 30.0%
GTTGCAGATTCAATTGAATT+TGG + Chr7:71349790-71349809 MsG0780039975.01.T01:CDS 30.0%
TCGCACAATCACAATATTAA+AGG - Chr7:71348155-71348174 None:intergenic 30.0%
TGTTAAAGCTCTTTCTTTCA+TGG - Chr7:71350383-71350402 None:intergenic 30.0%
TTCAAATGTCCTAACAAGTA+GGG - Chr7:71348494-71348513 None:intergenic 30.0%
TTCATTGAAGAAAACTCAGA+TGG + Chr7:71348875-71348894 MsG0780039975.01.T01:CDS 30.0%
TTGGAAGGAAGTTTAAGAAA+GGG + Chr7:71349860-71349879 MsG0780039975.01.T01:CDS 30.0%
TTTCTCTTCTTAAGAGTGAA+AGG - Chr7:71350808-71350827 None:intergenic 30.0%
! AATAGTGTAACTTGTGACAA+GGG - Chr7:71348280-71348299 None:intergenic 30.0%
! ACTCAAGGAAAACATTTTGA+AGG + Chr7:71350579-71350598 MsG0780039975.01.T01:CDS 30.0%
! ACTTGCTGATAAAAAAGTTG+CGG + Chr7:71350480-71350499 MsG0780039975.01.T01:CDS 30.0%
! AGATGAAAGTGTGAAACTAT+TGG + Chr7:71349841-71349860 MsG0780039975.01.T01:CDS 30.0%
! GTAGTTTGTAATAACTGTGT+TGG + Chr7:71347992-71348011 MsG0780039975.01.T01:intron 30.0%
! TAATAGTGTAACTTGTGACA+AGG - Chr7:71348281-71348300 None:intergenic 30.0%
!! AAAACATTTTGAAGGAAGAG+AGG + Chr7:71350587-71350606 MsG0780039975.01.T01:CDS 30.0%
!! AAACATTTTGAAGGAAGAGA+GGG + Chr7:71350588-71350607 MsG0780039975.01.T01:CDS 30.0%
!! TTAGCTTTGATTAGAGATGA+AGG + Chr7:71349950-71349969 MsG0780039975.01.T01:CDS 30.0%
AAAAAAGTTAAAGGAGGCCA+CGG + Chr7:71349703-71349722 MsG0780039975.01.T01:CDS 35.0%
ACATTAGAGAAGAAGGGAAA+AGG + Chr7:71349338-71349357 MsG0780039975.01.T01:CDS 35.0%
AGCAAGTACTTGTTCTTCAT+TGG - Chr7:71349585-71349604 None:intergenic 35.0%
AGTTCTCTTGTTCTTGAAGT+AGG - Chr7:71349146-71349165 None:intergenic 35.0%
CAATGAAGTTCTATTTGCCA+AGG - Chr7:71351021-71351040 None:intergenic 35.0%
CCGAATAACTTTGCCAAATT+TGG - Chr7:71350841-71350860 None:intergenic 35.0%
CTTGAAGAAAAACGATTCGT+CGG + Chr7:71350042-71350061 MsG0780039975.01.T01:CDS 35.0%
GGAAGAGATAGACAAATCAA+AGG + Chr7:71349724-71349743 MsG0780039975.01.T01:CDS 35.0%
GGAATCAAGTTACAAAGCTA+AGG + Chr7:71349295-71349314 MsG0780039975.01.T01:CDS 35.0%
GGTCAAAGAAATGGAGAAAA+GGG + Chr7:71349811-71349830 MsG0780039975.01.T01:CDS 35.0%
GGTTTACATCAAAGAGAAGA+TGG + Chr7:71350612-71350631 MsG0780039975.01.T01:CDS 35.0%
GTTCAAATGTCCTAACAAGT+AGG - Chr7:71348495-71348514 None:intergenic 35.0%
GTTCTCTTGTTCTTGAAGTA+GGG - Chr7:71349145-71349164 None:intergenic 35.0%
TAAGGAGTTGTTGAACAGAT+CGG - Chr7:71347821-71347840 None:intergenic 35.0%
TAGAGGATTGCAATTCAAGA+AGG + Chr7:71347866-71347885 MsG0780039975.01.T01:CDS 35.0%
TGATGCTTCCATTTCTTTCT+CGG - Chr7:71349501-71349520 None:intergenic 35.0%
TGGTCAAAGAAATGGAGAAA+AGG + Chr7:71349810-71349829 MsG0780039975.01.T01:CDS 35.0%
TTGTGCATATGATTGTAGAC+TGG - Chr7:71350918-71350937 None:intergenic 35.0%
TTGTTACATCCCTACTTGTT+AGG + Chr7:71348482-71348501 MsG0780039975.01.T01:intron 35.0%
! AACAACTGAAGCTTTAGCTT+TGG + Chr7:71350330-71350349 MsG0780039975.01.T01:CDS 35.0%
! AGAACAAGTACTTGCTGAAT+TGG + Chr7:71349589-71349608 MsG0780039975.01.T01:CDS 35.0%
! AGATGAAGGTTTTCAGTTCA+TGG + Chr7:71349964-71349983 MsG0780039975.01.T01:CDS 35.0%
! ATTTGAGATTGATACGAGTG+AGG + Chr7:71350267-71350286 MsG0780039975.01.T01:CDS 35.0%
! CTCTTGTGTCTTTGTTTAGT+TGG + Chr7:71347956-71347975 MsG0780039975.01.T01:intron 35.0%
! GAAAGTGTGAAACTATTGGA+AGG + Chr7:71349845-71349864 MsG0780039975.01.T01:CDS 35.0%
! TTTTCAGTTCATGGCTTCTA+TGG + Chr7:71349973-71349992 MsG0780039975.01.T01:CDS 35.0%
! TTTTTGCTTAGGACCACTTT+TGG - Chr7:71348335-71348354 None:intergenic 35.0%
!! AACATGGTGCTATAGTTGTA+AGG + Chr7:71349363-71349382 MsG0780039975.01.T01:CDS 35.0%
!! GATTGAAGCTTTGAAAGAGT+TGG + Chr7:71349616-71349635 MsG0780039975.01.T01:CDS 35.0%
AAGAAGGGAAAAGGTCAACA+TGG + Chr7:71349347-71349366 MsG0780039975.01.T01:CDS 40.0%
AAGCAAATACCATACCTGAG+AGG - Chr7:71348579-71348598 None:intergenic 40.0%
AAGCTAGAAGAGACATTGGA+AGG + Chr7:71349171-71349190 MsG0780039975.01.T01:CDS 40.0%
ACGAGTGAGGAAAAATTGCA+AGG + Chr7:71350280-71350299 MsG0780039975.01.T01:CDS 40.0%
AGGTGCAAACTCTGATGAAT+CGG + Chr7:71347886-71347905 MsG0780039975.01.T01:CDS 40.0%
AGTAGGGATGTAACAAGAAG+AGG - Chr7:71348478-71348497 None:intergenic 40.0%
CAAAGCTAAGGCGAAAATGA+AGG + Chr7:71349307-71349326 MsG0780039975.01.T01:CDS 40.0%
CTCCTTTACGGTTTGTAACT+CGG - Chr7:71349906-71349925 None:intergenic 40.0%
CTCTTTCAAAGCTTCAATCC+TGG - Chr7:71349615-71349634 None:intergenic 40.0%
GAAATGGAGAAAAGGGTTCA+AGG + Chr7:71349818-71349837 MsG0780039975.01.T01:CDS 40.0%
GGTCCTTCACTTATTTGTGA+AGG + Chr7:71348179-71348198 MsG0780039975.01.T01:intron 40.0%
GTAGGGATGTAACAAGAAGA+GGG - Chr7:71348477-71348496 None:intergenic 40.0%
GTTTAAGCTAAAGCTTGACG+TGG + Chr7:71349448-71349467 MsG0780039975.01.T01:CDS 40.0%
TAACAGCAGAGAAAAGAGTG+AGG + Chr7:71351049-71351068 MsG0780039975.01.T01:three_prime_UTR 40.0%
TACCGAGTTACAAACCGTAA+AGG + Chr7:71349901-71349920 MsG0780039975.01.T01:CDS 40.0%
TGAGCTGAAGCATGTAACTA+AGG + Chr7:71350009-71350028 MsG0780039975.01.T01:CDS 40.0%
TGCACAAGTGATGAGAGAAT+TGG + Chr7:71349406-71349425 MsG0780039975.01.T01:CDS 40.0%
TTAAGAAAGGGTGACGAATC+AGG + Chr7:71349872-71349891 MsG0780039975.01.T01:CDS 40.0%
! CCATCTTTTGCCAAAACTGA+AGG - Chr7:71348758-71348777 None:intergenic 40.0%
! CTGTTTTGCAAGAGAAATCG+CGG + Chr7:71349474-71349493 MsG0780039975.01.T01:CDS 40.0%
! GAAGGTACAAAGAGAGTAGA+TGG + Chr7:71349189-71349208 MsG0780039975.01.T01:CDS 40.0%
! TGATTTGTCTATCTCTTCCG+TGG - Chr7:71349723-71349742 None:intergenic 40.0%
! TGTTTTGCAAGAGAAATCGC+GGG + Chr7:71349475-71349494 MsG0780039975.01.T01:CDS 40.0%
! TTCCAATGTCTCTTCTAGCT+TGG - Chr7:71349172-71349191 None:intergenic 40.0%
!! ATGGTGCTATAGTTGTAAGG+AGG + Chr7:71349366-71349385 MsG0780039975.01.T01:CDS 40.0%
!! CCTTCAGTTTTGGCAAAAGA+TGG + Chr7:71348755-71348774 MsG0780039975.01.T01:intron 40.0%
!! TGAAGCTTTGAAAGAGTTGG+AGG + Chr7:71349619-71349638 MsG0780039975.01.T01:CDS 40.0%
AACCGTAAAGGAGGAACTTG+AGG + Chr7:71349913-71349932 MsG0780039975.01.T01:CDS 45.0%
AATCACAGTCTCAACCTCTC+AGG + Chr7:71348562-71348581 MsG0780039975.01.T01:intron 45.0%
CACCAAGCTAGAAGAGACAT+TGG + Chr7:71349167-71349186 MsG0780039975.01.T01:CDS 45.0%
CGAGTTACAAACCGTAAAGG+AGG + Chr7:71349904-71349923 MsG0780039975.01.T01:CDS 45.0%
GAGCGAGAAGGAAATACTAC+TGG + Chr7:71350534-71350553 MsG0780039975.01.T01:CDS 45.0%
GGATGTAACAAGAAGAGGGA+GGG - Chr7:71348473-71348492 None:intergenic 45.0%
GGTGCAAACTCTGATGAATC+GGG + Chr7:71347887-71347906 MsG0780039975.01.T01:CDS 45.0%
TAAAAAAGTTGCGGCAGCTG+AGG + Chr7:71350489-71350508 MsG0780039975.01.T01:CDS 45.0%
TATCAATGACCGGTTGTGAC+TGG - Chr7:71348448-71348467 None:intergenic 45.0%
TGAGAGGTTGAGACTGTGAT+TGG - Chr7:71348563-71348582 None:intergenic 45.0%
TGCAAGAAGAGTTAGCAGTG+AGG + Chr7:71350636-71350655 MsG0780039975.01.T01:CDS 45.0%
TGTCCAAAACCAGTCACAAC+CGG + Chr7:71348436-71348455 MsG0780039975.01.T01:intron 45.0%
! AACTCAGATGGATTTCGCAG+CGG + Chr7:71348887-71348906 MsG0780039975.01.T01:CDS 45.0%
! AAGTACTTGCTGAATTGGCC+AGG + Chr7:71349594-71349613 MsG0780039975.01.T01:CDS 45.0%
! GCAAGGCGTTATGAAAGAGT+TGG + Chr7:71350297-71350316 MsG0780039975.01.T01:CDS 45.0%
! TTTTTCCTCTGCAGCAGATG+CGG - Chr7:71350116-71350135 None:intergenic 45.0%
!! CATTTTGAAGGAAGAGAGGG+AGG + Chr7:71350591-71350610 MsG0780039975.01.T01:CDS 45.0%
!! GGTGAAGGATTTTCAAGCCT+TGG + Chr7:71351001-71351020 MsG0780039975.01.T01:three_prime_UTR 45.0%
!! TTTAAAAAAAAACAAAAAAA+TGG + Chr7:71348065-71348084 MsG0780039975.01.T01:intron 5.0%
!!! TTTTATCTTTATATATATTT+AGG - Chr7:71348380-71348399 None:intergenic 5.0%
CAGTCTCAACCTCTCAGGTA+TGG + Chr7:71348567-71348586 MsG0780039975.01.T01:intron 50.0%
CGCCTCAAGTTCCTCCTTTA+CGG - Chr7:71349918-71349937 None:intergenic 50.0%
CGTAAAGGAGGAACTTGAGG+CGG + Chr7:71349916-71349935 MsG0780039975.01.T01:CDS 50.0%
GGGATGTAACAAGAAGAGGG+AGG - Chr7:71348474-71348493 None:intergenic 50.0%
TTCTGCTGCAGCTGCATGAT+TGG - Chr7:71350458-71350477 None:intergenic 50.0%
! TTTCGCAGCGGATTTCTCAG+CGG + Chr7:71348899-71348918 MsG0780039975.01.T01:CDS 50.0%
!! AGGGAGGGAGTATCAATGAC+CGG - Chr7:71348458-71348477 None:intergenic 50.0%
!!! TGACCGGTTGTGACTGGTTT+TGG - Chr7:71348442-71348461 None:intergenic 50.0%
ACTCTGATGAATCGGGTGCG+AGG + Chr7:71347894-71347913 MsG0780039975.01.T01:intron 55.0%
ATCGCGGGCCGAGAAAGAAA+TGG + Chr7:71349490-71349509 MsG0780039975.01.T01:CDS 55.0%
GGACTAATGTGCCGAGTTGC+AGG - Chr7:71350787-71350806 None:intergenic 55.0%
! CTGCTGCTTCACCTGCAACT+CGG + Chr7:71350773-71350792 MsG0780039975.01.T01:CDS 55.0%
! GGCATGGATTGAAGCGCTCA+AGG + Chr7:71350510-71350529 MsG0780039975.01.T01:CDS 55.0%
AAGTTGCGGCAGCTGAGGCA+TGG + Chr7:71350494-71350513 MsG0780039975.01.T01:CDS 60.0%
AGAAGCCGCATCTGCTGCAG+AGG + Chr7:71350108-71350127 MsG0780039975.01.T01:CDS 60.0%
AGCGCTCAAGGCGAGCGAGA+AGG + Chr7:71350522-71350541 MsG0780039975.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 71347774 71351238 71347774 ID=MsG0780039975.01;Name=MsG0780039975.01
Chr7 mRNA 71347774 71351238 71347774 ID=MsG0780039975.01.T01;Parent=MsG0780039975.01;Name=MsG0780039975.01.T01;_AED=0.41;_eAED=0.41;_QI=0|0.5|0.66|0.66|1|1|3|347|681
Chr7 exon 71347774 71347908 71347774 ID=MsG0780039975.01.T01:exon:13769;Parent=MsG0780039975.01.T01
Chr7 exon 71348762 71348920 71348762 ID=MsG0780039975.01.T01:exon:13770;Parent=MsG0780039975.01.T01
Chr7 exon 71349140 71351238 71349140 ID=MsG0780039975.01.T01:exon:13771;Parent=MsG0780039975.01.T01
Chr7 CDS 71347774 71347908 71347774 ID=MsG0780039975.01.T01:cds;Parent=MsG0780039975.01.T01
Chr7 CDS 71348762 71348920 71348762 ID=MsG0780039975.01.T01:cds;Parent=MsG0780039975.01.T01
Chr7 CDS 71349140 71350891 71349140 ID=MsG0780039975.01.T01:cds;Parent=MsG0780039975.01.T01
Chr7 three_prime_UTR 71350892 71351238 71350892 ID=MsG0780039975.01.T01:three_prime_utr;Parent=MsG0780039975.01.T01
Gene Sequence

>MsG0780039975.01.T01

ATGATCTGGAAGGAGAGGAATGATAAAAGATTTCAGAATTGTTACCGATCTGTTCAACAACTCCTTAACCAAATCAAAATTGATGCTTACATTAGAGGATTGCAATTCAAGAAGGTGCAAACTCTGATGAATCGGTTTTGGCAAAAGATGGATGATACTAAAGTTGGTATGAGAAGAGTTAGATCAGTTAAAGATGTTATTAGTCTATATGATGATAGGAATCATAGGACTGCTGATAGTGATAGTTCTTCATTGAAGAAAACTCAGATGGATTTCGCAGCGGATTTCTCAGCGAACCCTACTTCAAGAACAAGAGAACTACACCAAGCTAGAAGAGACATTGGAAGGTACAAAGAGAGTAGATGGACAGCAGAATCTGCAAAATCTCAAGCTGAATCTGAGCTTTCAAATGCTAAAAAGACAATGAAAAATCTCTCTTCTATGATTGAGGAATCAAGTTACAAAGCTAAGGCGAAAATGAAGGACATAGAAACATTAGAGAAGAAGGGAAAAGGTCAACATGGTGCTATAGTTGTAAGGAGGAATGAGAATTATGAGTATGCACAAGTGATGAGAGAATTGGAATATCTCAAAAAGGAATTGTTTAAGCTAAAGCTTGACGTGGCTTCTGTTTTGCAAGAGAAATCGCGGGCCGAGAAAGAAATGGAAGCATCAAGCTCGAAGATGATCGATTGTTCAAGAAAAGAAGAAGTACTTAGAAAGGAGATTGAAGAAGCCAATGAAGAACAAGTACTTGCTGAATTGGCCAGGATTGAAGCTTTGAAAGAGTTGGAGGATATTAGAGTTCAAAGAGAAAGAGAAGCAAATGAGTTCTCATTCAAATTGGAAAACACAAGAAAAAAGTTAAAGGAGGCCACGGAAGAGATAGACAAATCAAAGGAACTTGAAATGAAATTAGCTATGACAGTTTCAGATGTTGATCTGTTGCAGATTCAATTGAATTTGGTCAAAGAAATGGAGAAAAGGGTTCAAGGAGATGAAAGTGTGAAACTATTGGAAGGAAGTTTAAGAAAGGGTGACGAATCAGGAGACTCTACCGAGTTACAAACCGTAAAGGAGGAACTTGAGGCGGCAACGAAAGAATTAGCTTTGATTAGAGATGAAGGTTTTCAGTTCATGGCTTCTATGGATGTTATAAGAAATGAGCTGAAGCATGTAACTAAGGAAATCGCTCGCTTGAAGAAAAACGATTCGTCGGTTCAAAATCTCAATTCAAAGGTTCTAAGAACAAAATCTAAGCTAGAAGCCGCATCTGCTGCAGAGGAAAAAGCGAGATCATTAGTAGTTAGTCTATCTCATTCTCTTGACACTCTGAAGAAAGAAACAGATGAAGCTAAAATGGAAAAAGAGCTCATATCTCAAGATATTATAACAACTAAGTTGGAAATCGAAAAAACTGAATTTGAGATTGATACGAGTGAGGAAAAATTGCAAGGCGTTATGAAAGAGTTGGAAGAAGCAAAAACAACTGAAGCTTTAGCTTTGGAGAAGCTTAAAACACTTTCTGAGACTACCATGAAAGAAAGAGCTTTAACAGCAAAACATAGTTCATCGATTACTATCTCCAAATTTGAATATGAGTATCTAACCAATCATGCAGCTGCAGCAGAAGAACTTGCTGATAAAAAAGTTGCGGCAGCTGAGGCATGGATTGAAGCGCTCAAGGCGAGCGAGAAGGAAATACTACTGGAAACAAAAATAGTTCAAAGAGAACTCAAGGAAAACATTTTGAAGGAAGAGAGGGAGGTTTACATCAAAGAGAAGATGGCTGCAAGAAGAGTTAGCAGTGAGGAGTTTGATAGAACAAGAAAACGCGAGAAGAGTTCGTCGCAGAGAGCTGTTTCTAGAAAGAGTATTAAATCAAATGGAAGTATGACTCCTGCTAAAAGAATTAAGTTTCAGAAGTCTGCTGCTTCACCTGCAACTCGGCACATTAGTCCTTTCACTCTTAAGAAGAGAAAGAAAGTTATTCCAAATTTGGCAAAGTTATTCGGTAGCAAGAAAAACACTATGTCTAAAGAGTAA

Protein sequence

>MsG0780039975.01.T01

MIWKERNDKRFQNCYRSVQQLLNQIKIDAYIRGLQFKKVQTLMNRFWQKMDDTKVGMRRVRSVKDVISLYDDRNHRTADSDSSSLKKTQMDFAADFSANPTSRTRELHQARRDIGRYKESRWTAESAKSQAESELSNAKKTMKNLSSMIEESSYKAKAKMKDIETLEKKGKGQHGAIVVRRNENYEYAQVMRELEYLKKELFKLKLDVASVLQEKSRAEKEMEASSSKMIDCSRKEEVLRKEIEEANEEQVLAELARIEALKELEDIRVQREREANEFSFKLENTRKKLKEATEEIDKSKELEMKLAMTVSDVDLLQIQLNLVKEMEKRVQGDESVKLLEGSLRKGDESGDSTELQTVKEELEAATKELALIRDEGFQFMASMDVIRNELKHVTKEIARLKKNDSSVQNLNSKVLRTKSKLEAASAAEEKARSLVVSLSHSLDTLKKETDEAKMEKELISQDIITTKLEIEKTEFEIDTSEEKLQGVMKELEEAKTTEALALEKLKTLSETTMKERALTAKHSSSITISKFEYEYLTNHAAAAEELADKKVAAAEAWIEALKASEKEILLETKIVQRELKENILKEEREVYIKEKMAARRVSSEEFDRTRKREKSSSQRAVSRKSIKSNGSMTPAKRIKFQKSAASPATRHISPFTLKKRKKVIPNLAKLFGSKKNTMSKE*