AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016494.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016494.01.T01 MTR_3g090940 96.234 239 9 0 1 239 1 239 9.19e-164 460
MsG0380016494.01.T01 MTR_3g090950 92.469 239 18 0 1 239 1 239 7.20e-157 442
MsG0380016494.01.T01 MTR_1g028460 77.178 241 50 2 1 236 1 241 4.14e-128 370
MsG0380016494.01.T01 MTR_3g089125 46.522 230 116 4 6 231 5 231 2.07e-58 191
MsG0380016494.01.T01 MTR_1g029380 44.231 208 113 2 10 217 9 213 1.11e-49 168
MsG0380016494.01.T01 MTR_8g042490 38.278 209 126 2 8 216 16 221 5.20e-45 156
MsG0380016494.01.T01 MTR_3g080990 35.443 237 151 1 2 238 4 238 2.24e-42 150
MsG0380016494.01.T01 MTR_2g073190 39.450 218 126 4 8 222 16 230 2.80e-41 155
MsG0380016494.01.T01 MTR_4g071360 70.000 100 14 1 301 400 5 88 1.83e-40 141
MsG0380016494.01.T01 MTR_8g099730 36.967 211 131 1 6 216 18 226 1.30e-38 140
MsG0380016494.01.T01 MTR_6g007633 35.849 212 133 2 3 213 5 214 9.10e-38 137
MsG0380016494.01.T01 MTR_2g436310 39.234 209 123 1 9 217 8 212 2.11e-37 136
MsG0380016494.01.T01 MTR_6g007623 35.556 225 140 3 4 225 3 225 2.92e-36 133
MsG0380016494.01.T01 MTR_6g007637 36.715 207 126 3 6 210 9 212 5.53e-35 130
MsG0380016494.01.T01 MTR_8g096310 32.773 238 151 3 2 234 5 238 1.65e-34 129
MsG0380016494.01.T01 MTR_3g098910 35.000 240 143 7 5 238 8 240 1.78e-34 130
MsG0380016494.01.T01 MTR_2g007890 33.182 220 140 3 5 223 11 224 5.98e-33 125
MsG0380016494.01.T01 MTR_5g067530 32.569 218 135 4 3 216 7 216 5.88e-32 122
MsG0380016494.01.T01 MTR_7g405710 33.178 214 137 3 3 215 6 214 1.18e-31 122
MsG0380016494.01.T01 MTR_8g096320 30.222 225 153 2 3 226 6 227 1.20e-30 118
MsG0380016494.01.T01 MTR_5g092600 32.836 201 123 4 21 217 24 216 1.38e-30 118
MsG0380016494.01.T01 MTR_7g405730 31.163 215 140 4 3 215 6 214 1.84e-28 113
MsG0380016494.01.T01 MTR_4g106990 31.053 190 129 1 27 216 36 223 1.55e-27 109
MsG0380016494.01.T01 MTR_7g007490 31.222 221 132 3 5 217 9 217 1.76e-27 110
MsG0380016494.01.T01 MTR_8g099730 35.976 164 103 1 53 216 1 162 3.62e-26 104
MsG0380016494.01.T01 MTR_3g098930 32.524 206 130 5 2 204 6 205 4.29e-25 102
MsG0380016494.01.T01 MTR_6g007610 30.093 216 137 4 5 210 7 218 1.08e-24 102
MsG0380016494.01.T01 MTR_8g096320 32.692 156 104 1 72 226 17 172 7.05e-20 87.4
MsG0380016494.01.T01 MTR_4g057575 44.444 72 40 0 329 400 1 72 7.04e-15 70.9
MsG0380016494.01.T01 MTR_5g067070 54.717 53 24 0 299 351 108 160 7.87e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016494.01.T01 AT5G53190 53.719 242 104 1 1 234 1 242 2.87e-91 276
MsG0380016494.01.T01 AT1G21460 48.039 204 103 2 10 213 9 209 7.51e-53 177
MsG0380016494.01.T01 AT1G21460 48.634 183 91 2 11 193 10 189 5.00e-46 157
MsG0380016494.01.T01 AT3G14770 39.720 214 126 2 10 223 18 228 5.75e-42 148
MsG0380016494.01.T01 AT5G40260 35.714 238 142 5 2 235 4 234 2.43e-40 144
MsG0380016494.01.T01 AT5G62850 35.616 219 129 5 3 216 5 216 5.26e-39 140
MsG0380016494.01.T01 AT5G13170 33.603 247 153 5 5 249 10 247 4.83e-38 139
MsG0380016494.01.T01 AT5G23660 33.891 239 143 5 11 244 16 244 2.36e-37 137
MsG0380016494.01.T01 AT4G10850 37.220 223 129 5 5 221 9 226 9.86e-37 135
MsG0380016494.01.T01 AT1G66770 36.486 222 136 3 5 223 9 228 2.57e-36 134
MsG0380016494.01.T01 AT4G15920 36.321 212 130 2 9 219 8 215 2.45e-35 130
MsG0380016494.01.T01 AT3G48740 32.922 243 146 6 11 247 16 247 1.06e-34 130
MsG0380016494.01.T01 AT4G25010 34.498 229 137 5 3 223 6 229 4.27e-34 128
MsG0380016494.01.T01 AT3G16690 34.667 225 138 3 5 228 4 220 8.09e-34 126
MsG0380016494.01.T01 AT5G40260 36.842 190 114 3 2 188 4 190 1.01e-33 125
MsG0380016494.01.T01 AT3G16690 34.667 225 138 3 5 228 39 255 1.12e-33 127
MsG0380016494.01.T01 AT5G50800 33.051 236 148 5 11 241 14 244 1.23e-33 127
MsG0380016494.01.T01 AT5G62850 35.897 195 113 5 3 192 5 192 1.80e-33 125
MsG0380016494.01.T01 AT2G39060 31.416 226 141 3 11 231 14 230 1.43e-30 118
MsG0380016494.01.T01 AT5G50790 31.336 217 141 4 11 224 14 225 5.61e-30 117
MsG0380016494.01.T01 AT3G28007 34.914 232 145 2 6 237 8 233 6.69e-30 116
MsG0380016494.01.T01 AT3G16690 28.125 192 119 3 5 181 4 191 8.39e-16 75.9

Find 113 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTATGTTCTTATATATTTC+TGG 0.082921 3:+84279446 MsG0380016494.01.T01:CDS
TTCCCTCTTGTAACTGTAAA+TGG 0.137284 3:+84279400 MsG0380016494.01.T01:CDS
TCATGCATTCCTTACATAAT+TGG 0.157418 3:+84279313 MsG0380016494.01.T01:CDS
CGTTTGGCTGTTGCTGTTCT+TGG 0.224596 3:+84278891 MsG0380016494.01.T01:CDS
GTCTGACGGTGCTCTCCATT+GGG 0.239821 3:-84282809 None:intergenic
GGTATTTCTGTTGCATTGTA+TGG 0.290809 3:+84279866 MsG0380016494.01.T01:CDS
TTACATTTAAAAGAGTAATA+AGG 0.302719 3:+84279269 MsG0380016494.01.T01:CDS
AGAGGGTGCTTCGCCAGTTT+GGG 0.326929 3:+84282906 MsG0380016494.01.T01:CDS
TTGGGACAGGTTGCAGTTCA+TGG 0.338317 3:+84283043 MsG0380016494.01.T01:CDS
TTAATTAATTACCTTTCCTT+TGG 0.338649 3:-84279479 None:intergenic
CTTTCTCAGCTAGTGTTTGT+TGG 0.343821 3:+84280081 MsG0380016494.01.T01:CDS
GAGAGGGTGCTTCGCCAGTT+TGG 0.346971 3:+84282905 MsG0380016494.01.T01:CDS
ACAATTATTGCTACTTCAAC+TGG 0.349410 3:-84283146 None:intergenic
AGTGTTTGTTGGTTAGCTTA+TGG 0.361551 3:+84280092 MsG0380016494.01.T01:CDS
TGTCTGACGGTGCTCTCCAT+TGG 0.362907 3:-84282810 None:intergenic
CACTAGCTGTAGAATGCTTA+AGG 0.365029 3:-84280258 None:intergenic
GAGAAAGCACACAGAGATAA+TGG 0.369533 3:-84280065 None:intergenic
AGAAGGTGGTGGAGTGGATA+TGG 0.370544 3:+84280360 MsG0380016494.01.T01:CDS
TAATTAATTACCTTTCCTTT+GGG 0.378955 3:-84279478 None:intergenic
TCAACTGGTACCGGCATGTC+TGG 0.379602 3:-84283131 None:intergenic
GTATGGGAAGCAAGGATGTC+TGG 0.389877 3:+84282664 MsG0380016494.01.T01:CDS
GATGTCAGAAACACTTCGTT+TGG 0.395773 3:+84278875 None:intergenic
GCTCACAGAAAGCTACTTGT+AGG 0.395959 3:+84279830 MsG0380016494.01.T01:CDS
GTTTCATCACTTCATAGGTA+TGG 0.400120 3:+84282647 MsG0380016494.01.T01:CDS
TCCCATTTGTAGCTTACAAC+AGG 0.409608 3:-84279373 None:intergenic
TGGTCTGAACAAACCCAAAC+TGG 0.433566 3:-84282919 None:intergenic
TACCTGTTGTAAGCTACAAA+TGG 0.435390 3:+84279371 MsG0380016494.01.T01:CDS
CTTGTAGGAAGCATAGGTTT+AGG 0.449062 3:+84279845 MsG0380016494.01.T01:CDS
ACTCTGGATGGCTGAGATGC+GGG 0.452567 3:+84282858 MsG0380016494.01.T01:CDS
TCAACATGTGCACTCTGAAC+AGG 0.453034 3:-84282953 None:intergenic
CTTGTAACTGTAAATGGAGT+TGG 0.457451 3:+84279406 MsG0380016494.01.T01:CDS
ACTAGCTGTAGAATGCTTAA+GGG 0.467602 3:-84280257 None:intergenic
TTCAACAATCCAATTATGTA+AGG 0.470461 3:-84279322 None:intergenic
CATGGTGTGGAGGTAGAAGA+TGG 0.470927 3:+84283061 MsG0380016494.01.T01:CDS
ATGCAGAACACAAGCAGAAC+CGG 0.478624 3:-84279770 None:intergenic
ACCTGTTGTAAGCTACAAAT+GGG 0.478632 3:+84279372 MsG0380016494.01.T01:CDS
AAGGGTGTTCCAACCACACT+TGG 0.486138 3:-84280239 None:intergenic
TTTGTGCCACTGCATGGTTT+AGG 0.486393 3:+84282726 MsG0380016494.01.T01:CDS
AGTTAGAGAAGGTGGTGGAG+TGG 0.489784 3:+84280354 MsG0380016494.01.T01:CDS
TGGGTGTTTCATCACTTCAT+AGG 0.493067 3:+84282642 MsG0380016494.01.T01:CDS
TAAAGGCTGACCCGCTCAAA+CGG 0.499314 3:-84282836 None:intergenic
GCTTTCTGTGAGCTGTATCA+TGG 0.504332 3:-84279820 None:intergenic
AACTGGCGAAGCACCCTCTC+CGG 0.504692 3:-84282902 None:intergenic
TGGTTCTCCTCTTGTTGCAA+TGG 0.505017 3:+84279886 MsG0380016494.01.T01:CDS
TACGCTGACACCTCAGCAGT+TGG 0.506036 3:+84283024 MsG0380016494.01.T01:CDS
TTTCATCACTTCATAGGTAT+GGG 0.506905 3:+84282648 MsG0380016494.01.T01:CDS
TAGCTTAGAGTTAGAGAAGG+TGG 0.509889 3:+84280346 MsG0380016494.01.T01:CDS
ATTGCTACTTCAACTGGTAC+CGG 0.511048 3:-84283140 None:intergenic
TAGGCACGGTGGACAACTAC+AGG 0.512844 3:+84282745 MsG0380016494.01.T01:CDS
TACTCTGGATGGCTGAGATG+CGG 0.513637 3:+84282857 MsG0380016494.01.T01:CDS
GGATGTCTGGGACGGATATG+TGG 0.516092 3:+84282677 MsG0380016494.01.T01:CDS
GAGCGGGTCAGCCTTTACTC+TGG 0.517195 3:+84282842 MsG0380016494.01.T01:CDS
AAGCTACTTGTAGGAAGCAT+AGG 0.522097 3:+84279839 MsG0380016494.01.T01:CDS
GTCAGACACGTCCGTTTGAG+CGG 0.525701 3:+84282825 MsG0380016494.01.T01:CDS
TTCTGGTATTCTTCGCCCAA+AGG 0.527053 3:+84279463 MsG0380016494.01.T01:CDS
GGGTCAGCCTTTACTCTGGA+TGG 0.529474 3:+84282846 MsG0380016494.01.T01:CDS
GGATTTGACGAGGGTTGTCA+TGG 0.534016 3:+84282785 MsG0380016494.01.T01:CDS
GACACCTCAGCAGTTGGGAC+AGG 0.536877 3:+84283030 MsG0380016494.01.T01:CDS
ATCTCAGCCATCCAGAGTAA+AGG 0.537470 3:-84282853 None:intergenic
CTTAGAGTTAGAGAAGGTGG+TGG 0.538258 3:+84280349 MsG0380016494.01.T01:CDS
GTAACCCATACCATGTGAAA+AGG 0.542307 3:-84279351 None:intergenic
ACGCTGACACCTCAGCAGTT+GGG 0.542562 3:+84283025 MsG0380016494.01.T01:CDS
TGCACATGTTGATGTTAACT+TGG 0.546449 3:+84282964 MsG0380016494.01.T01:CDS
AAAATTGGAGACTTGGAAAA+GGG 0.550831 3:+84280323 MsG0380016494.01.T01:CDS
CTTAAGCATTCTACAGCTAG+TGG 0.551071 3:+84280259 MsG0380016494.01.T01:CDS
TTATAATTTGCAGGTGAAGG+TGG 0.554577 3:+84279733 MsG0380016494.01.T01:intron
CCAGAAATATATAAGAACAT+AGG 0.556306 3:-84279446 None:intergenic
TATGGGAAGCAAGGATGTCT+GGG 0.557152 3:+84282665 MsG0380016494.01.T01:CDS
TGACTCACCATTGCAACAAG+AGG 0.559030 3:-84279893 None:intergenic
CAGGAACTATCTAGATGCGC+TGG 0.559375 3:+84282764 MsG0380016494.01.T01:CDS
TTACAGGGTCCAAGTGTGGT+TGG 0.559994 3:+84280230 MsG0380016494.01.T01:intron
GTATTCTTCGCCCAAAGGAA+AGG 0.561323 3:+84279468 MsG0380016494.01.T01:CDS
ACAGGTTGCAGTTCATGGTG+TGG 0.562237 3:+84283048 MsG0380016494.01.T01:CDS
ATACAGAAAAGCAAGGGTTG+TGG 0.565449 3:+84280292 MsG0380016494.01.T01:CDS
CTTCATAGGTATGGGAAGCA+AGG 0.565593 3:+84282656 MsG0380016494.01.T01:CDS
ACTTCAAATACAGAAAAGCA+AGG 0.565612 3:+84280285 MsG0380016494.01.T01:CDS
CTTCAAATACAGAAAAGCAA+GGG 0.567410 3:+84280286 MsG0380016494.01.T01:CDS
GCACACAGAGATAATGGTAG+TGG 0.569878 3:-84280059 None:intergenic
GAGGGTTGTCATGGCCCCAA+TGG 0.570362 3:+84282794 MsG0380016494.01.T01:CDS
GCTGAGATGCGGGGAGCGCA+TGG 0.572421 3:+84282868 MsG0380016494.01.T01:CDS
TCAGACACGTCCGTTTGAGC+GGG 0.577164 3:+84282826 MsG0380016494.01.T01:CDS
GAGGTGTCAGCGTATAATCA+AGG 0.578426 3:-84283015 None:intergenic
GGGTAGCTTAGAGTTAGAGA+AGG 0.579030 3:+84280343 MsG0380016494.01.T01:CDS
GCGCATGGTGAAATATCTGC+CGG 0.588047 3:+84282883 MsG0380016494.01.T01:CDS
CTCTGGATGGCTGAGATGCG+GGG 0.588089 3:+84282859 MsG0380016494.01.T01:CDS
GCACTCTGAACAGGATGTCT+CGG 0.592004 3:-84282944 None:intergenic
GCTCAAACGGACGTGTCTGA+CGG 0.592649 3:-84282823 None:intergenic
CTGAACAGGATGTCTCGGTA+TGG 0.593662 3:-84282939 None:intergenic
GGTGAAATATCTGCCGGAGA+GGG 0.594774 3:+84282889 MsG0380016494.01.T01:CDS
ACATGTTGATGTTAACTTGG+CGG 0.610355 3:+84282967 MsG0380016494.01.T01:CDS
CATGATTCTTCCAGACATGC+CGG 0.611169 3:+84283121 MsG0380016494.01.T01:CDS
AGTTATACAAACAAAGAGTG+TGG 0.613814 3:+84280028 MsG0380016494.01.T01:CDS
ATTATTACAGGGTCCAAGTG+TGG 0.616909 3:+84280226 MsG0380016494.01.T01:intron
ACTCCATTTACAGTTACAAG+AGG 0.617777 3:-84279403 None:intergenic
GCCACTGCATGGTTTAGGCA+CGG 0.619945 3:+84282731 MsG0380016494.01.T01:CDS
CTCCATTTACAGTTACAAGA+GGG 0.625290 3:-84279402 None:intergenic
TCTGACGGTGCTCTCCATTG+GGG 0.625543 3:-84282808 None:intergenic
CATGCGTGGAATGAGACACC+TGG 0.625569 3:-84283102 None:intergenic
GGAAGCAAGGATGTCTGGGA+CGG 0.635373 3:+84282669 MsG0380016494.01.T01:CDS
AATCAAGGACACGCTGAAAG+CGG 0.642228 3:-84283000 None:intergenic
TGGTGAAATATCTGCCGGAG+AGG 0.645497 3:+84282888 MsG0380016494.01.T01:CDS
GGTTGCAGTTCATGGTGTGG+AGG 0.645687 3:+84283051 MsG0380016494.01.T01:CDS
TAGATGCGCTGGATTTGACG+AGG 0.647376 3:+84282775 MsG0380016494.01.T01:CDS
GCAACCTGTCCCAACTGCTG+AGG 0.657946 3:-84283034 None:intergenic
GGTGGCTATGATCACGACAC+CGG 0.659593 3:+84279751 MsG0380016494.01.T01:CDS
TAGAAGATGGATACATCGAG+TGG 0.672925 3:+84283074 MsG0380016494.01.T01:CDS
ACCGTGCCTAAACCATGCAG+TGG 0.673388 3:-84282732 None:intergenic
TGTTCGTGATGTATTCGTTG+CGG 0.682490 3:+84280121 MsG0380016494.01.T01:CDS
AGATGCGCTGGATTTGACGA+GGG 0.687020 3:+84282776 MsG0380016494.01.T01:CDS
TGCAGCATAAAGTGAGACTG+AGG 0.688260 3:-84279152 None:intergenic
ATGTCTGGAAGAATCATGCG+TGG 0.716993 3:-84283116 None:intergenic
AATAAGGAAGAAAAGCACAG+AGG 0.737633 3:+84279285 MsG0380016494.01.T01:CDS
ACTGCATGGTTTAGGCACGG+TGG 0.746344 3:+84282734 MsG0380016494.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTAATTAAGTGTATA+TGG + Chr3:84282583-84282602 MsG0380016494.01.T01:intron 10.0%
!!! TTATTTGTAGTATTTATTTT+AGG + Chr3:84280701-84280720 MsG0380016494.01.T01:intron 10.0%
!! AAACTGTAAAATTGTAAAAA+TGG - Chr3:84281935-84281954 None:intergenic 15.0%
!! AACTGTAAAATTGTAAAAAT+GGG - Chr3:84281934-84281953 None:intergenic 15.0%
!! TATTTCCATGAAAAAATATT+TGG - Chr3:84281079-84281098 None:intergenic 15.0%
!! TTACATTTAAAAGAGTAATA+AGG + Chr3:84279269-84279288 MsG0380016494.01.T01:CDS 15.0%
!! TTTATAAACATGTTGTTAAT+GGG + Chr3:84281200-84281219 MsG0380016494.01.T01:intron 15.0%
!!! TTTATGTAATTTGTTATGAA+TGG - Chr3:84281239-84281258 None:intergenic 15.0%
!! ACTGTAAAATTGTAAAAATG+GGG - Chr3:84281933-84281952 None:intergenic 20.0%
!! ATGCTAATTAAATTAAGACA+AGG - Chr3:84279078-84279097 None:intergenic 20.0%
!! ATTATATTCAACAAAGTTTG+AGG - Chr3:84280939-84280958 None:intergenic 20.0%
!! GTTTATAAACATGTTGTTAA+TGG + Chr3:84281199-84281218 MsG0380016494.01.T01:intron 20.0%
!! TAACTATTCATACAAGATAT+CGG + Chr3:84281012-84281031 MsG0380016494.01.T01:intron 20.0%
!! TAATTAATTACCTTTCCTTT+GGG - Chr3:84279481-84279500 None:intergenic 20.0%
!! TTAATTAATTACCTTTCCTT+TGG - Chr3:84279482-84279501 None:intergenic 20.0%
!! TTATATTCAACAAAGTTTGA+GGG - Chr3:84280938-84280957 None:intergenic 20.0%
!! TTATGTTATGTAACTTACAT+TGG - Chr3:84279178-84279197 None:intergenic 20.0%
!!! AATTAGAATCAACTTTTCAT+AGG + Chr3:84280810-84280829 MsG0380016494.01.T01:intron 20.0%
!!! AATTAGTTCGTATTTTTTTG+GGG + Chr3:84282110-84282129 MsG0380016494.01.T01:intron 20.0%
!!! ATCTTTTATGGTTAATTTTC+AGG + Chr3:84279245-84279264 MsG0380016494.01.T01:intron 20.0%
!!! ATGGTTTGTATATTTATATG+TGG + Chr3:84282602-84282621 MsG0380016494.01.T01:intron 20.0%
!!! ATTGATTAATTAGTTTGTGA+AGG + Chr3:84280160-84280179 MsG0380016494.01.T01:intron 20.0%
!!! CAATTAGTTCGTATTTTTTT+GGG + Chr3:84282109-84282128 MsG0380016494.01.T01:intron 20.0%
!!! GTGAACTAAAAAGTAATTTT+AGG + Chr3:84280670-84280689 MsG0380016494.01.T01:intron 20.0%
!!! GTTAAGGTTATATCAAATTT+TGG + Chr3:84281405-84281424 MsG0380016494.01.T01:intron 20.0%
!!! TAGTTTGCTATACTTTTAAA+TGG - Chr3:84281653-84281672 None:intergenic 20.0%
!!! TATAGAGTCAAAATTACTTT+TGG - Chr3:84280611-84280630 None:intergenic 20.0%
!!! TCAATTAGTTCGTATTTTTT+TGG + Chr3:84282108-84282127 MsG0380016494.01.T01:intron 20.0%
!!! TCTTTTATGGTTAATTTTCA+GGG + Chr3:84279246-84279265 MsG0380016494.01.T01:intron 20.0%
!!! TGAAGTATTGAAATCTTTTA+TGG + Chr3:84279233-84279252 MsG0380016494.01.T01:intron 20.0%
!!! TTAAGAAGTTGTTTTTTTAG+AGG + Chr3:84281458-84281477 MsG0380016494.01.T01:intron 20.0%
!!! TTGCTATTATGATTATTACA+GGG + Chr3:84280215-84280234 MsG0380016494.01.T01:intron 20.0%
!!! TTTCATCATTTATAATTTGC+AGG + Chr3:84279724-84279743 MsG0380016494.01.T01:intron 20.0%
!!! TTTGCTATTATGATTATTAC+AGG + Chr3:84280214-84280233 MsG0380016494.01.T01:intron 20.0%
! AATGATGAAAACTTTAGTCA+AGG - Chr3:84279714-84279733 None:intergenic 25.0%
! AATTATCATCTCAAAGGTTA+AGG + Chr3:84281389-84281408 MsG0380016494.01.T01:intron 25.0%
! ATAAAATGAACAAGTGAGAT+TGG + Chr3:84281676-84281695 MsG0380016494.01.T01:intron 25.0%
! ATATTTCGGATTACATAATC+CGG - Chr3:84281851-84281870 None:intergenic 25.0%
! CCAGAAATATATAAGAACAT+AGG - Chr3:84279449-84279468 None:intergenic 25.0%
! CCTATGTTCTTATATATTTC+TGG + Chr3:84279446-84279465 MsG0380016494.01.T01:CDS 25.0%
! CGAAATATAGATAAAACATC+CGG + Chr3:84281863-84281882 MsG0380016494.01.T01:intron 25.0%
! CTATAACTTCTCAAAAATCA+CGG + Chr3:84279641-84279660 MsG0380016494.01.T01:intron 25.0%
! CTGTAAAATTGTAAAAATGG+GGG - Chr3:84281932-84281951 None:intergenic 25.0%
! TACAAAACAACACATAAAGA+AGG - Chr3:84280466-84280485 None:intergenic 25.0%
! TATCCAAATTATCATCTCAA+AGG + Chr3:84281383-84281402 MsG0380016494.01.T01:intron 25.0%
! TGTAAAATTGTAAAAATGGG+GGG - Chr3:84281931-84281950 None:intergenic 25.0%
! TTCAACAATCCAATTATGTA+AGG - Chr3:84279325-84279344 None:intergenic 25.0%
!! CGGATGTTTTATCTATATTT+CGG - Chr3:84281865-84281884 None:intergenic 25.0%
!! TAGTGAGACTTTCTAAAAAT+CGG - Chr3:84278964-84278983 None:intergenic 25.0%
!!! AACATACACTTGATTTGTTT+TGG - Chr3:84279563-84279582 None:intergenic 25.0%
!!! AGGTACCAAATATTTTTTCA+TGG + Chr3:84281071-84281090 MsG0380016494.01.T01:intron 25.0%
!!! ATAAAACTCTCTAAAATCCT+TGG - Chr3:84280437-84280456 None:intergenic 25.0%
!!! ATCATTCAGTCTACTTTTAA+TGG - Chr3:84281704-84281723 None:intergenic 25.0%
!!! ATTTTTGAGAAGTTATAGAG+TGG - Chr3:84279639-84279658 None:intergenic 25.0%
!!! TAACCTTTGAGATGATAATT+TGG - Chr3:84281389-84281408 None:intergenic 25.0%
!!! TGATTTGTTTTGGTTGAAAA+AGG - Chr3:84279553-84279572 None:intergenic 25.0%
!!! TTTGGTCTTTTTTTATGCTT+AGG + Chr3:84281747-84281766 MsG0380016494.01.T01:intron 25.0%
!!! TTTTTTTTCTTCCGAAATCA+CGG - Chr3:84280857-84280876 None:intergenic 25.0%
AAAAACCAGCACAAATATCA+AGG - Chr3:84282439-84282458 None:intergenic 30.0%
AAAAATTGGAGACTTGGAAA+AGG + Chr3:84280322-84280341 MsG0380016494.01.T01:CDS 30.0%
AAAATTGGAGACTTGGAAAA+GGG + Chr3:84280323-84280342 MsG0380016494.01.T01:CDS 30.0%
AACATCCGGATTATATAATC+CGG + Chr3:84281877-84281896 MsG0380016494.01.T01:intron 30.0%
AAGATATCGGTATCTAAACA+AGG + Chr3:84281025-84281044 MsG0380016494.01.T01:intron 30.0%
AAGTGTATGTTGTATGACTT+TGG + Chr3:84279572-84279591 MsG0380016494.01.T01:intron 30.0%
AATTCATCACCAAAAAACAG+AGG + Chr3:84279936-84279955 MsG0380016494.01.T01:intron 30.0%
ACATTGCAGATTTAACTACT+TGG + Chr3:84282227-84282246 MsG0380016494.01.T01:intron 30.0%
ACGAAATGATTTGATTCAAG+TGG - Chr3:84279005-84279024 None:intergenic 30.0%
ACTTCAAATACAGAAAAGCA+AGG + Chr3:84280285-84280304 MsG0380016494.01.T01:CDS 30.0%
AGTTATACAAACAAAGAGTG+TGG + Chr3:84280028-84280047 MsG0380016494.01.T01:CDS 30.0%
ATATTAGTTCGTTCTTGGAT+CGG - Chr3:84281597-84281616 None:intergenic 30.0%
ATTTCGGAAGAAAAAAAACG+TGG + Chr3:84280859-84280878 MsG0380016494.01.T01:intron 30.0%
CAAGATACAGCAAATATATG+CGG - Chr3:84282346-84282365 None:intergenic 30.0%
CACAAAGGAACTAAACTATA+AGG - Chr3:84279114-84279133 None:intergenic 30.0%
CATCATCTACTACTCTTAAT+TGG + Chr3:84279204-84279223 MsG0380016494.01.T01:intron 30.0%
CTAGCTTAAGCTACTTAATT+AGG + Chr3:84279039-84279058 MsG0380016494.01.T01:intron 30.0%
CTTCAAATACAGAAAAGCAA+GGG + Chr3:84280286-84280305 MsG0380016494.01.T01:CDS 30.0%
TAATCATAACGTCCTCTAAT+GGG + Chr3:84281624-84281643 MsG0380016494.01.T01:intron 30.0%
TACAATTGCGTATTCAAACA+AGG + Chr3:84280884-84280903 MsG0380016494.01.T01:intron 30.0%
TCATGCATTCCTTACATAAT+TGG + Chr3:84279313-84279332 MsG0380016494.01.T01:CDS 30.0%
TTAATCATAACGTCCTCTAA+TGG + Chr3:84281623-84281642 MsG0380016494.01.T01:intron 30.0%
TTGATCATCAAAAAGAGAGA+AGG - Chr3:84280532-84280551 None:intergenic 30.0%
TTTCATCACTTCATAGGTAT+GGG + Chr3:84282648-84282667 MsG0380016494.01.T01:CDS 30.0%
! AGACTGAATGATTTTATGTG+TGG + Chr3:84281712-84281731 MsG0380016494.01.T01:intron 30.0%
! CATTTATAATTTGCAGGTGA+AGG + Chr3:84279730-84279749 MsG0380016494.01.T01:intron 30.0%
! GACTGAATGATTTTATGTGT+GGG + Chr3:84281713-84281732 MsG0380016494.01.T01:intron 30.0%
! TTAGAGAGTTTTCTTTTGAG+AGG - Chr3:84281133-84281152 None:intergenic 30.0%
! TTTTCCAAGTCTCCAATTTT+TGG - Chr3:84280323-84280342 None:intergenic 30.0%
!! ATATATTTGCTGTATCTTGG+TGG + Chr3:84282347-84282366 MsG0380016494.01.T01:intron 30.0%
!! TATATTTGCTGTATCTTGGT+GGG + Chr3:84282348-84282367 MsG0380016494.01.T01:intron 30.0%
!!! TTTTTTTCTTCCGAAATCAC+GGG - Chr3:84280856-84280875 None:intergenic 30.0%
AATCATAACGTCCTCTAATG+GGG + Chr3:84281625-84281644 MsG0380016494.01.T01:intron 35.0%
AATGAAATCTCTCCCACTAT+GGG + Chr3:84280492-84280511 MsG0380016494.01.T01:intron 35.0%
ACCTGTTGTAAGCTACAAAT+GGG + Chr3:84279372-84279391 MsG0380016494.01.T01:CDS 35.0%
ACTACTTGGAGAGGATATTA+AGG + Chr3:84282241-84282260 MsG0380016494.01.T01:intron 35.0%
ACTAGCTGTAGAATGCTTAA+GGG - Chr3:84280260-84280279 None:intergenic 35.0%
ACTCCATTTACAGTTACAAG+AGG - Chr3:84279406-84279425 None:intergenic 35.0%
ACTGTCCGGATTATATAATC+CGG - Chr3:84281885-84281904 None:intergenic 35.0%
CACCAAAATCTTGACCAAAT+TGG + Chr3:84282004-84282023 MsG0380016494.01.T01:intron 35.0%
CAGTTCTTCTCACAGAAAAA+AGG + Chr3:84281051-84281070 MsG0380016494.01.T01:intron 35.0%
CCAAGAACGAACTAATATGA+AGG + Chr3:84281599-84281618 MsG0380016494.01.T01:intron 35.0%
CCAATTGTGAACAATGTTGA+GGG + Chr3:84280403-84280422 MsG0380016494.01.T01:intron 35.0%
CCTCAACATTGTTCACAATT+GGG - Chr3:84280405-84280424 None:intergenic 35.0%
CCTTCATATTAGTTCGTTCT+TGG - Chr3:84281602-84281621 None:intergenic 35.0%
CTCCATTTACAGTTACAAGA+GGG - Chr3:84279405-84279424 None:intergenic 35.0%
CTCTACATTATCCCAAAATC+CGG + Chr3:84281980-84281999 MsG0380016494.01.T01:intron 35.0%
CTTGTAACTGTAAATGGAGT+TGG + Chr3:84279406-84279425 MsG0380016494.01.T01:CDS 35.0%
GTTTCATCACTTCATAGGTA+TGG + Chr3:84282647-84282666 MsG0380016494.01.T01:CDS 35.0%
TAACTTCTCAAAAATCACGG+CGG + Chr3:84279644-84279663 MsG0380016494.01.T01:intron 35.0%
TAATGAAATCTCTCCCACTA+TGG + Chr3:84280491-84280510 MsG0380016494.01.T01:intron 35.0%
TACCTGTTGTAAGCTACAAA+TGG + Chr3:84279371-84279390 MsG0380016494.01.T01:CDS 35.0%
TAGCATATGTGCCAAAATCA+CGG - Chr3:84279674-84279693 None:intergenic 35.0%
TGAGCAAGAAAACTCCAATT+TGG - Chr3:84282021-84282040 None:intergenic 35.0%
TGCACATGTTGATGTTAACT+TGG + Chr3:84282964-84282983 MsG0380016494.01.T01:CDS 35.0%
TTCCCTCTTGTAACTGTAAA+TGG + Chr3:84279400-84279419 MsG0380016494.01.T01:CDS 35.0%
! AATAAGGAAGAAAAGCACAG+AGG + Chr3:84279285-84279304 MsG0380016494.01.T01:CDS 35.0%
! ACATGTTGATGTTAACTTGG+CGG + Chr3:84282967-84282986 MsG0380016494.01.T01:CDS 35.0%
! CTCCAATTTGGTCAAGATTT+TGG - Chr3:84282009-84282028 None:intergenic 35.0%
! GATCAATGTAACAGAGTGTT+CGG + Chr3:84280546-84280565 MsG0380016494.01.T01:intron 35.0%
! GGTATTTCTGTTGCATTGTA+TGG + Chr3:84279866-84279885 MsG0380016494.01.T01:CDS 35.0%
! TGAATTGTCTCCTTTTCACA+TGG + Chr3:84279341-84279360 MsG0380016494.01.T01:CDS 35.0%
! TTATAATTTGCAGGTGAAGG+TGG + Chr3:84279733-84279752 MsG0380016494.01.T01:intron 35.0%
!! AGTGTTTGTTGGTTAGCTTA+TGG + Chr3:84280092-84280111 MsG0380016494.01.T01:CDS 35.0%
!! CGCATATATTTGCTGTATCT+TGG + Chr3:84282344-84282363 MsG0380016494.01.T01:intron 35.0%
!! GTATGTTGGTAATTTGCGTA+GGG - Chr3:84281825-84281844 None:intergenic 35.0%
!!! ATATTTGTGCTGGTTTTTCG+TGG + Chr3:84282441-84282460 MsG0380016494.01.T01:intron 35.0%
!!! CTTTTTTCTGTGAGAAGAAC+TGG - Chr3:84281053-84281072 None:intergenic 35.0%
!!! GGTCTTTTTTTATGCTTAGG+AGG + Chr3:84281750-84281769 MsG0380016494.01.T01:intron 35.0%
!!! GTGTGGGTATTTTTGAGTTT+TGG + Chr3:84281729-84281748 MsG0380016494.01.T01:intron 35.0%
!!! TAGTACGTTCCTCTGTTTTT+TGG - Chr3:84279948-84279967 None:intergenic 35.0%
!!! TATTTGTGCTGGTTTTTCGT+GGG + Chr3:84282442-84282461 MsG0380016494.01.T01:intron 35.0%
!!! TTGGTGATGAATTTTGAACG+TGG - Chr3:84279929-84279948 None:intergenic 35.0%
!!! TTTTTTTGGGGTCCATAACA+CGG + Chr3:84282122-84282141 MsG0380016494.01.T01:intron 35.0%
AAAGAGATCGAGAAGACCAA+AGG + Chr3:84282201-84282220 MsG0380016494.01.T01:intron 40.0%
AAATCTGCAATGTGCACCTT+TGG - Chr3:84282220-84282239 None:intergenic 40.0%
AGAAGTTATAGAGTGGCGTT+TGG - Chr3:84279632-84279651 None:intergenic 40.0%
AGAGACCTTGATATTTGTGC+TGG + Chr3:84282431-84282450 MsG0380016494.01.T01:intron 40.0%
AGAGCCAAAAATTGGAGACT+TGG + Chr3:84280316-84280335 MsG0380016494.01.T01:CDS 40.0%
ATACAGAAAAGCAAGGGTTG+TGG + Chr3:84280292-84280311 MsG0380016494.01.T01:CDS 40.0%
ATCATAACGTCCTCTAATGG+GGG + Chr3:84281626-84281645 MsG0380016494.01.T01:intron 40.0%
ATGAAATCTCTCCCACTATG+GGG + Chr3:84280493-84280512 MsG0380016494.01.T01:intron 40.0%
ATTATTACAGGGTCCAAGTG+TGG + Chr3:84280226-84280245 MsG0380016494.01.T01:intron 40.0%
CAAATTACCAACATACCCTC+CGG + Chr3:84281829-84281848 MsG0380016494.01.T01:intron 40.0%
CACTAGCTGTAGAATGCTTA+AGG - Chr3:84280261-84280280 None:intergenic 40.0%
CCCAATTGTGAACAATGTTG+AGG + Chr3:84280402-84280421 MsG0380016494.01.T01:intron 40.0%
CCCTCAACATTGTTCACAAT+TGG - Chr3:84280406-84280425 None:intergenic 40.0%
CTTAAGCATTCTACAGCTAG+TGG + Chr3:84280259-84280278 MsG0380016494.01.T01:CDS 40.0%
CTTTCTCAGCTAGTGTTTGT+TGG + Chr3:84280081-84280100 MsG0380016494.01.T01:CDS 40.0%
GCAGATTTAACTACTTGGAG+AGG + Chr3:84282232-84282251 MsG0380016494.01.T01:intron 40.0%
GGCACTAACTCAGTTGTATA+AGG + Chr3:84282472-84282491 MsG0380016494.01.T01:intron 40.0%
GTAACCCATACCATGTGAAA+AGG - Chr3:84279354-84279373 None:intergenic 40.0%
GTTGTGGAAGAGCCAAAAAT+TGG + Chr3:84280308-84280327 MsG0380016494.01.T01:CDS 40.0%
TAGAAGATGGATACATCGAG+TGG + Chr3:84283074-84283093 MsG0380016494.01.T01:CDS 40.0%
TAGCTTAGAGTTAGAGAAGG+TGG + Chr3:84280346-84280365 MsG0380016494.01.T01:CDS 40.0%
TAGTTCCTTTGTGCTCTTAC+AGG + Chr3:84279121-84279140 MsG0380016494.01.T01:intron 40.0%
TATGTGGTTGTCTTTGATGC+AGG + Chr3:84282618-84282637 MsG0380016494.01.T01:intron 40.0%
TCCCATTTGTAGCTTACAAC+AGG - Chr3:84279376-84279395 None:intergenic 40.0%
TGGGTGTTTCATCACTTCAT+AGG + Chr3:84282642-84282661 MsG0380016494.01.T01:CDS 40.0%
TGTTCGTGATGTATTCGTTG+CGG + Chr3:84280121-84280140 MsG0380016494.01.T01:CDS 40.0%
TTCGGATTACATAATCCGGA+GGG - Chr3:84281847-84281866 None:intergenic 40.0%
TTGGAGAGGATATTAAGGAG+CGG + Chr3:84282246-84282265 MsG0380016494.01.T01:intron 40.0%
TTTAAATGGACCCCCATTAG+AGG - Chr3:84281639-84281658 None:intergenic 40.0%
TTTCGGATTACATAATCCGG+AGG - Chr3:84281848-84281867 None:intergenic 40.0%
! AAGCTACTTGTAGGAAGCAT+AGG + Chr3:84279839-84279858 MsG0380016494.01.T01:CDS 40.0%
! CTTGTAGGAAGCATAGGTTT+AGG + Chr3:84279845-84279864 MsG0380016494.01.T01:CDS 40.0%
! GAGAAAGCACACAGAGATAA+TGG - Chr3:84280068-84280087 None:intergenic 40.0%
! GTCTCCTTTTCACATGGTAT+GGG + Chr3:84279347-84279366 MsG0380016494.01.T01:CDS 40.0%
! TGTCTCCTTTTCACATGGTA+TGG + Chr3:84279346-84279365 MsG0380016494.01.T01:CDS 40.0%
! TTTTATACCTCGCAACTGTC+CGG - Chr3:84281899-84281918 None:intergenic 40.0%
!! AATGGATGGTGGATTACTTG+GGG + Chr3:84282157-84282176 MsG0380016494.01.T01:intron 40.0%
!! ATACATCGAGTGGTTTTACC+AGG + Chr3:84283084-84283103 MsG0380016494.01.T01:CDS 40.0%
!! GAATGGATGGTGGATTACTT+GGG + Chr3:84282156-84282175 MsG0380016494.01.T01:intron 40.0%
!! GGTATGTTGGTAATTTGCGT+AGG - Chr3:84281826-84281845 None:intergenic 40.0%
!! GTATTACTTTTCCCACCCTA+TGG + Chr3:84281787-84281806 MsG0380016494.01.T01:intron 40.0%
!!! AGATTTTGGTGTCCGGATTT+TGG - Chr3:84281995-84282014 None:intergenic 40.0%
!!! ATTTGTGCTGGTTTTTCGTG+GGG + Chr3:84282443-84282462 MsG0380016494.01.T01:intron 40.0%
!!! GATTTTGGTGTCCGGATTTT+GGG - Chr3:84281994-84282013 None:intergenic 40.0%
!!! TTGGTCAAGATTTTGGTGTC+CGG - Chr3:84282002-84282021 None:intergenic 40.0%
AATCAAGGACACGCTGAAAG+CGG - Chr3:84283003-84283022 None:intergenic 45.0%
ACCTTCCTGATGCTTGACAA+GGG - Chr3:84282061-84282080 None:intergenic 45.0%
AGCAAATATATGCGGACAGC+CGG - Chr3:84282338-84282357 None:intergenic 45.0%
ATATAATCCGGACAGTTGCG+AGG + Chr3:84281889-84281908 MsG0380016494.01.T01:intron 45.0%
ATCTCAGCCATCCAGAGTAA+AGG - Chr3:84282856-84282875 None:intergenic 45.0%
ATGCAGAACACAAGCAGAAC+CGG - Chr3:84279773-84279792 None:intergenic 45.0%
ATGTCTGGAAGAATCATGCG+TGG - Chr3:84283119-84283138 None:intergenic 45.0%
CATGATTCTTCCAGACATGC+CGG + Chr3:84283121-84283140 MsG0380016494.01.T01:CDS 45.0%
CTTAGAGTTAGAGAAGGTGG+TGG + Chr3:84280349-84280368 MsG0380016494.01.T01:CDS 45.0%
CTTCAGTGACAAAAGCCAGT+GGG + Chr3:84282380-84282399 MsG0380016494.01.T01:intron 45.0%
CTTCATAGGTATGGGAAGCA+AGG + Chr3:84282656-84282675 MsG0380016494.01.T01:CDS 45.0%
CTTTGGTTATGCCAGAGTCT+CGG + Chr3:84279589-84279608 MsG0380016494.01.T01:intron 45.0%
GATTACTTGGGGTCTGATCT+GGG + Chr3:84282168-84282187 MsG0380016494.01.T01:intron 45.0%
GCTCACAGAAAGCTACTTGT+AGG + Chr3:84279830-84279849 MsG0380016494.01.T01:CDS 45.0%
GCTTGACAAGGGTTGAAATG+CGG - Chr3:84282050-84282069 None:intergenic 45.0%
GCTTTCTGTGAGCTGTATCA+TGG - Chr3:84279823-84279842 None:intergenic 45.0%
GGACAGTTGCGAGGTATAAA+AGG + Chr3:84281898-84281917 MsG0380016494.01.T01:intron 45.0%
GGAGTATGATGTAACTGAGG+AGG + Chr3:84282295-84282314 MsG0380016494.01.T01:intron 45.0%
GGATATTAAGGAGCGGTTGA+AGG + Chr3:84282253-84282272 MsG0380016494.01.T01:intron 45.0%
GGCGTTTGGAAAATCACGAT+GGG - Chr3:84279618-84279637 None:intergenic 45.0%
GGGTAGCTTAGAGTTAGAGA+AGG + Chr3:84280343-84280362 MsG0380016494.01.T01:CDS 45.0%
GTATGATGTAACTGAGGAGG+TGG + Chr3:84282298-84282317 MsG0380016494.01.T01:intron 45.0%
GTATTCTTCGCCCAAAGGAA+AGG + Chr3:84279468-84279487 MsG0380016494.01.T01:CDS 45.0%
TACCTTCCTGATGCTTGACA+AGG - Chr3:84282062-84282081 None:intergenic 45.0%
TATGGGAAGCAAGGATGTCT+GGG + Chr3:84282665-84282684 MsG0380016494.01.T01:CDS 45.0%
TCAACATGTGCACTCTGAAC+AGG - Chr3:84282956-84282975 None:intergenic 45.0%
TCTTCAGTGACAAAAGCCAG+TGG + Chr3:84282379-84282398 MsG0380016494.01.T01:intron 45.0%
TGACTCACCATTGCAACAAG+AGG - Chr3:84279896-84279915 None:intergenic 45.0%
TGCAGCATAAAGTGAGACTG+AGG - Chr3:84279155-84279174 None:intergenic 45.0%
TGGCGTTTGGAAAATCACGA+TGG - Chr3:84279619-84279638 None:intergenic 45.0%
TGGTCTGAACAAACCCAAAC+TGG - Chr3:84282922-84282941 None:intergenic 45.0%
TGGTTCTCCTCTTGTTGCAA+TGG + Chr3:84279886-84279905 MsG0380016494.01.T01:CDS 45.0%
TGTTGAGGGACAAAAGTCCA+AGG + Chr3:84280417-84280436 MsG0380016494.01.T01:intron 45.0%
TTCAACCCTTGTCAAGCATC+AGG + Chr3:84282053-84282072 MsG0380016494.01.T01:intron 45.0%
TTCTGGTATTCTTCGCCCAA+AGG + Chr3:84279463-84279482 MsG0380016494.01.T01:CDS 45.0%
TTGCTTACACACCCCATAGT+GGG - Chr3:84280507-84280526 None:intergenic 45.0%
TTTGCTTACACACCCCATAG+TGG - Chr3:84280508-84280527 None:intergenic 45.0%
! ACATAATCCGGAGGGTATGT+TGG - Chr3:84281839-84281858 None:intergenic 45.0%
! CATTGCCTGTAAGAGCACAA+AGG - Chr3:84279129-84279148 None:intergenic 45.0%
! GAGGTGTCAGCGTATAATCA+AGG - Chr3:84283018-84283037 None:intergenic 45.0%
! GCACACAGAGATAATGGTAG+TGG - Chr3:84280062-84280081 None:intergenic 45.0%
! GGAGGAGTATGATGTAACTG+AGG + Chr3:84282292-84282311 MsG0380016494.01.T01:intron 45.0%
! TTTGTGCCACTGCATGGTTT+AGG + Chr3:84282726-84282745 MsG0380016494.01.T01:CDS 45.0%
!! ATGCTTTTTGTGCCACTGCA+TGG + Chr3:84282720-84282739 MsG0380016494.01.T01:CDS 45.0%
!! CAGGATACTGAGTTTGTTGC+AGG + Chr3:84282534-84282553 MsG0380016494.01.T01:intron 45.0%
!! GGAATGGATGGTGGATTACT+TGG + Chr3:84282155-84282174 MsG0380016494.01.T01:intron 45.0%
!! TCAAGGTCTCTGAAGTACTC+AGG - Chr3:84282422-84282441 None:intergenic 45.0%
ACAGGTTGCAGTTCATGGTG+TGG + Chr3:84283048-84283067 MsG0380016494.01.T01:CDS 50.0%
ACCCTTGTCAAGCATCAGGA+AGG + Chr3:84282057-84282076 MsG0380016494.01.T01:intron 50.0%
AGATGCGCTGGATTTGACGA+GGG + Chr3:84282776-84282795 MsG0380016494.01.T01:CDS 50.0%
AGCTCAACAATGCTGCACGT+TGG + Chr3:84282495-84282514 MsG0380016494.01.T01:intron 50.0%
ATGTAACTGAGGAGGTGGAG+AGG + Chr3:84282303-84282322 MsG0380016494.01.T01:intron 50.0%
CAGGAACTATCTAGATGCGC+TGG + Chr3:84282764-84282783 MsG0380016494.01.T01:CDS 50.0%
CATGGTGTGGAGGTAGAAGA+TGG + Chr3:84283061-84283080 MsG0380016494.01.T01:CDS 50.0%
CTGAACAGGATGTCTCGGTA+TGG - Chr3:84282942-84282961 None:intergenic 50.0%
GCAAATATATGCGGACAGCC+GGG - Chr3:84282337-84282356 None:intergenic 50.0%
GCACTCTGAACAGGATGTCT+CGG - Chr3:84282947-84282966 None:intergenic 50.0%
GCGCATGGTGAAATATCTGC+CGG + Chr3:84282883-84282902 MsG0380016494.01.T01:CDS 50.0%
GGATTACTTGGGGTCTGATC+TGG + Chr3:84282167-84282186 MsG0380016494.01.T01:intron 50.0%
GGATTTGACGAGGGTTGTCA+TGG + Chr3:84282785-84282804 MsG0380016494.01.T01:CDS 50.0%
GGTGAAATATCTGCCGGAGA+GGG + Chr3:84282889-84282908 MsG0380016494.01.T01:CDS 50.0%
GGTTGTCTTTGATGCAGGCT+GGG + Chr3:84282623-84282642 MsG0380016494.01.T01:intron 50.0%
GTATGGGAAGCAAGGATGTC+TGG + Chr3:84282664-84282683 MsG0380016494.01.T01:CDS 50.0%
GTTGAAGGAGCAGAGGGATT+TGG + Chr3:84282268-84282287 MsG0380016494.01.T01:intron 50.0%
TAAAGGCTGACCCGCTCAAA+CGG - Chr3:84282839-84282858 None:intergenic 50.0%
TACTCTGGATGGCTGAGATG+CGG + Chr3:84282857-84282876 MsG0380016494.01.T01:CDS 50.0%
TAGATGCGCTGGATTTGACG+AGG + Chr3:84282775-84282794 MsG0380016494.01.T01:CDS 50.0%
TGGTGAAATATCTGCCGGAG+AGG + Chr3:84282888-84282907 MsG0380016494.01.T01:CDS 50.0%
TGGTTGTCTTTGATGCAGGC+TGG + Chr3:84282622-84282641 MsG0380016494.01.T01:intron 50.0%
TTAACGCCTGCCCGTGATTT+CGG + Chr3:84280843-84280862 MsG0380016494.01.T01:intron 50.0%
TTACAGGGTCCAAGTGTGGT+TGG + Chr3:84280230-84280249 MsG0380016494.01.T01:intron 50.0%
TTGGGACAGGTTGCAGTTCA+TGG + Chr3:84283043-84283062 MsG0380016494.01.T01:CDS 50.0%
TTTCTTCCGAAATCACGGGC+AGG - Chr3:84280852-84280871 None:intergenic 50.0%
! CGTTTGGCTGTTGCTGTTCT+TGG + Chr3:84278891-84278910 MsG0380016494.01.T01:CDS 50.0%
!! AAGGGTGTTCCAACCACACT+TGG - Chr3:84280242-84280261 None:intergenic 50.0%
!! AGAAGGTGGTGGAGTGGATA+TGG + Chr3:84280360-84280379 MsG0380016494.01.T01:CDS 50.0%
!! AGTTAGAGAAGGTGGTGGAG+TGG + Chr3:84280354-84280373 MsG0380016494.01.T01:CDS 50.0%
ACCGTGCCTAAACCATGCAG+TGG - Chr3:84282735-84282754 None:intergenic 55.0%
ACGCTGACACCTCAGCAGTT+GGG + Chr3:84283025-84283044 MsG0380016494.01.T01:CDS 55.0%
ACGTTGGAACACCAGTCAGG+TGG + Chr3:84282511-84282530 MsG0380016494.01.T01:intron 55.0%
ACTCTGGATGGCTGAGATGC+GGG + Chr3:84282858-84282877 MsG0380016494.01.T01:CDS 55.0%
ACTGCATGGTTTAGGCACGG+TGG + Chr3:84282734-84282753 MsG0380016494.01.T01:CDS 55.0%
AGACAACATCCACAGCCCAC+TGG - Chr3:84282398-84282417 None:intergenic 55.0%
CATGCGTGGAATGAGACACC+TGG - Chr3:84283105-84283124 None:intergenic 55.0%
GAAGGAGCAGAGGGATTTGG+TGG + Chr3:84282271-84282290 MsG0380016494.01.T01:intron 55.0%
GCCACTGCATGGTTTAGGCA+CGG + Chr3:84282731-84282750 MsG0380016494.01.T01:CDS 55.0%
GCTCAAACGGACGTGTCTGA+CGG - Chr3:84282826-84282845 None:intergenic 55.0%
GGAAGCAAGGATGTCTGGGA+CGG + Chr3:84282669-84282688 MsG0380016494.01.T01:CDS 55.0%
GGGTCAGCCTTTACTCTGGA+TGG + Chr3:84282846-84282865 MsG0380016494.01.T01:CDS 55.0%
GGTGGCTATGATCACGACAC+CGG + Chr3:84279751-84279770 MsG0380016494.01.T01:CDS 55.0%
GGTTGCAGTTCATGGTGTGG+AGG + Chr3:84283051-84283070 MsG0380016494.01.T01:CDS 55.0%
GTCAGACACGTCCGTTTGAG+CGG + Chr3:84282825-84282844 MsG0380016494.01.T01:CDS 55.0%
GTCTGACGGTGCTCTCCATT+GGG - Chr3:84282812-84282831 None:intergenic 55.0%
TACGCTGACACCTCAGCAGT+TGG + Chr3:84283024-84283043 MsG0380016494.01.T01:CDS 55.0%
TAGGCACGGTGGACAACTAC+AGG + Chr3:84282745-84282764 MsG0380016494.01.T01:CDS 55.0%
TCAGACACGTCCGTTTGAGC+GGG + Chr3:84282826-84282845 MsG0380016494.01.T01:CDS 55.0%
TCAGTATCCTGCCACCTGAC+TGG - Chr3:84282525-84282544 None:intergenic 55.0%
TCTGACGGTGCTCTCCATTG+GGG - Chr3:84282811-84282830 None:intergenic 55.0%
TGCACGTTGGAACACCAGTC+AGG + Chr3:84282508-84282527 MsG0380016494.01.T01:intron 55.0%
TGTCTGACGGTGCTCTCCAT+TGG - Chr3:84282813-84282832 None:intergenic 55.0%
! ACGGCGGATCACCGTGATTT+TGG + Chr3:84279660-84279679 MsG0380016494.01.T01:intron 55.0%
! GGATGTCTGGGACGGATATG+TGG + Chr3:84282677-84282696 MsG0380016494.01.T01:CDS 55.0%
! TAATTTGCGTAGGGCACGCG+AGG - Chr3:84281816-84281835 None:intergenic 55.0%
! TGGTTTTTCGTGGGGAGCTG+CGG + Chr3:84282451-84282470 MsG0380016494.01.T01:intron 55.0%
!! AGAGGGTGCTTCGCCAGTTT+GGG + Chr3:84282906-84282925 MsG0380016494.01.T01:CDS 55.0%
!! TCAACTGGTACCGGCATGTC+TGG - Chr3:84283134-84283153 None:intergenic 55.0%
!! TGACAAAAGCCAGTGGGCTG+TGG + Chr3:84282386-84282405 MsG0380016494.01.T01:intron 55.0%
ACACGGACGAGGCAGTGGAA+TGG + Chr3:84282139-84282158 MsG0380016494.01.T01:intron 60.0%
ACGATGGGTCACCGAGACTC+TGG - Chr3:84279603-84279622 None:intergenic 60.0%
ACGCGAGGAGACCATAGGGT+GGG - Chr3:84281801-84281820 None:intergenic 60.0%
AGGAGCGGTTGAAGGAGCAG+AGG + Chr3:84282261-84282280 MsG0380016494.01.T01:intron 60.0%
CCACTGCCTCGTCCGTGTTA+TGG - Chr3:84282137-84282156 None:intergenic 60.0%
CCATAACACGGACGAGGCAG+TGG + Chr3:84282134-84282153 MsG0380016494.01.T01:intron 60.0%
CGAGGCAGTGGAATGGATGG+TGG + Chr3:84282146-84282165 MsG0380016494.01.T01:intron 60.0%
CTCTGGATGGCTGAGATGCG+GGG + Chr3:84282859-84282878 MsG0380016494.01.T01:CDS 60.0%
GACACCTCAGCAGTTGGGAC+AGG + Chr3:84283030-84283049 MsG0380016494.01.T01:CDS 60.0%
GAGCGGGTCAGCCTTTACTC+TGG + Chr3:84282842-84282861 MsG0380016494.01.T01:CDS 60.0%
GAGGAGGTGGAGAGGTTGCT+TGG + Chr3:84282311-84282330 MsG0380016494.01.T01:intron 60.0%
GAGGGTTGTCATGGCCCCAA+TGG + Chr3:84282794-84282813 MsG0380016494.01.T01:CDS 60.0%
GCAACCTGTCCCAACTGCTG+AGG - Chr3:84283037-84283056 None:intergenic 60.0%
GGACGAGGCAGTGGAATGGA+TGG + Chr3:84282143-84282162 MsG0380016494.01.T01:intron 60.0%
GGAGCGGTTGAAGGAGCAGA+GGG + Chr3:84282262-84282281 MsG0380016494.01.T01:intron 60.0%
TGGAACACCAGTCAGGTGGC+AGG + Chr3:84282515-84282534 MsG0380016494.01.T01:intron 60.0%
TGGGGTCCATAACACGGACG+AGG + Chr3:84282128-84282147 MsG0380016494.01.T01:intron 60.0%
! AACTGGCGAAGCACCCTCTC+CGG - Chr3:84282905-84282924 None:intergenic 60.0%
!! GAGAGGGTGCTTCGCCAGTT+TGG + Chr3:84282905-84282924 MsG0380016494.01.T01:CDS 60.0%
!! GGAGCAGAGGGATTTGGTGG+AGG + Chr3:84282274-84282293 MsG0380016494.01.T01:intron 60.0%
!! GGCACAAAAAGCATCGCGCG+TGG - Chr3:84282714-84282733 None:intergenic 60.0%
AGGGCACGCGAGGAGACCAT+AGG - Chr3:84281806-84281825 None:intergenic 65.0%
CACGCGAGGAGACCATAGGG+TGG - Chr3:84281802-84281821 None:intergenic 65.0%
GGGCACGCGAGGAGACCATA+GGG - Chr3:84281805-84281824 None:intergenic 65.0%
GGTGGAGAGGTTGCTTGGCC+CGG + Chr3:84282316-84282335 MsG0380016494.01.T01:intron 65.0%
! GCTGAGATGCGGGGAGCGCA+TGG + Chr3:84282868-84282887 MsG0380016494.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 84278876 84283153 84278876 ID=MsG0380016494.01;Name=MsG0380016494.01
Chr3 mRNA 84278876 84283153 84278876 ID=MsG0380016494.01.T01;Parent=MsG0380016494.01;Name=MsG0380016494.01.T01;_AED=0.34;_eAED=0.36;_QI=0|0.66|0.57|1|1|1|7|0|412
Chr3 exon 84278876 84278912 84278876 ID=MsG0380016494.01.T01:exon:33428;Parent=MsG0380016494.01.T01
Chr3 exon 84279143 84279179 84279143 ID=MsG0380016494.01.T01:exon:33429;Parent=MsG0380016494.01.T01
Chr3 exon 84279267 84279489 84279267 ID=MsG0380016494.01.T01:exon:33430;Parent=MsG0380016494.01.T01
Chr3 exon 84279746 84279907 84279746 ID=MsG0380016494.01.T01:exon:33431;Parent=MsG0380016494.01.T01
Chr3 exon 84280023 84280142 84280023 ID=MsG0380016494.01.T01:exon:33432;Parent=MsG0380016494.01.T01
Chr3 exon 84280236 84280381 84280236 ID=MsG0380016494.01.T01:exon:33433;Parent=MsG0380016494.01.T01
Chr3 exon 84282640 84283153 84282640 ID=MsG0380016494.01.T01:exon:33434;Parent=MsG0380016494.01.T01
Chr3 CDS 84278876 84278912 84278876 ID=MsG0380016494.01.T01:cds;Parent=MsG0380016494.01.T01
Chr3 CDS 84279143 84279179 84279143 ID=MsG0380016494.01.T01:cds;Parent=MsG0380016494.01.T01
Chr3 CDS 84279267 84279489 84279267 ID=MsG0380016494.01.T01:cds;Parent=MsG0380016494.01.T01
Chr3 CDS 84279746 84279907 84279746 ID=MsG0380016494.01.T01:cds;Parent=MsG0380016494.01.T01
Chr3 CDS 84280023 84280142 84280023 ID=MsG0380016494.01.T01:cds;Parent=MsG0380016494.01.T01
Chr3 CDS 84280236 84280381 84280236 ID=MsG0380016494.01.T01:cds;Parent=MsG0380016494.01.T01
Chr3 CDS 84282640 84283153 84282640 ID=MsG0380016494.01.T01:cds;Parent=MsG0380016494.01.T01
Gene Sequence

>MsG0380016494.01.T01

ATGTCAGAAACACTTCGTTTGGCTGTTGCTGTTCTTGGCAATGCTGCCTCAGTCTCACTTTATGCTGCACCAATGGTTACATTTAAAAGAGTAATAAGGAAGAAAAGCACAGAGGAATTCTCATGCATTCCTTACATAATTGGATTGTTGAATTGTCTCCTTTTCACATGGTATGGGTTACCTGTTGTAAGCTACAAATGGGAAAATTTCCCTCTTGTAACTGTAAATGGAGTTGGAATTGCTCTTGAGTTATCCTATGTTCTTATATATTTCTGGTATTCTTCGCCCAAAGGAAAGGTGAAGGTGGCTATGATCACGACACCGGTTCTGCTTGTGTTCTGCATAGTTGCAGCTGTTTCAGCTTTTTCATTCCATGATACAGCTCACAGAAAGCTACTTGTAGGAAGCATAGGTTTAGGTATTTCTGTTGCATTGTATGGTTCTCCTCTTGTTGCAATGAAGAAAGTTATACAAACAAAGAGTGTGGAATTCATGCCACTACCATTATCTCTGTGTGCTTTCTCAGCTAGTGTTTGTTGGTTAGCTTATGGAATTCTTGTTCGTGATGTATTCGTTGCGGGTCCAAGTGTGGTTGGAACACCCTTAAGCATTCTACAGCTAGTGGTTTACTTCAAATACAGAAAAGCAAGGGTTGTGGAAGAGCCAAAAATTGGAGACTTGGAAAAGGGTAGCTTAGAGTTAGAGAAGGTGGTGGAGTGGATATGGCTGGGTGTTTCATCACTTCATAGGTATGGGAAGCAAGGATGTCTGGGACGGATATGTGGAGAATTTGTATCCACGCGCGATGCTTTTTGTGCCACTGCATGGTTTAGGCACGGTGGACAACTACAGGAACTATCTAGATGCGCTGGATTTGACGAGGGTTGTCATGGCCCCAATGGAGAGCACCGTCAGACACGTCCGTTTGAGCGGGTCAGCCTTTACTCTGGATGGCTGAGATGCGGGGAGCGCATGGTGAAATATCTGCCGGAGAGGGTGCTTCGCCAGTTTGGGTTTGTTCAGACCATACCGAGACATCCTGTTCAGAGTGCACATGTTGATGTTAACTTGGCGGAGATCACAAACCGCTTTCAGCGTGTCCTTGATTATACGCTGACACCTCAGCAGTTGGGACAGGTTGCAGTTCATGGTGTGGAGGTAGAAGATGGATACATCGAGTGGTTTTACCAGGTGTCTCATTCCACGCATGATTCTTCCAGACATGCCGGTACCAGTTGA
Protein sequence

>MsG0380016494.01.T01

MSETLRLAVAVLGNAASVSLYAAPMVTFKRVIRKKSTEEFSCIPYIIGLLNCLLFTWYGLPVVSYKWENFPLVTVNGVGIALELSYVLIYFWYSSPKGKVKVAMITTPVLLVFCIVAAVSAFSFHDTAHRKLLVGSIGLGISVALYGSPLVAMKKVIQTKSVEFMPLPLSLCAFSASVCWLAYGILVRDVFVAGPSVVGTPLSILQLVVYFKYRKARVVEEPKIGDLEKGSLELEKVVEWIWLGVSSLHRYGKQGCLGRICGEFVSTRDAFCATAWFRHGGQLQELSRCAGFDEGCHGPNGEHRQTRPFERVSLYSGWLRCGERMVKYLPERVLRQFGFVQTIPRHPVQSAHVDVNLAEITNRFQRVLDYTLTPQQLGQVAVHGVEVEDGYIEWFYQVSHSTHDSSRHAGTS*