AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016522.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016522.01.T01 MTR_3g091400 69.041 365 21 6 1 273 40 404 5.30e-156 449
MsG0380016522.01.T01 MTR_8g099565 69.792 96 28 1 174 269 321 415 4.72e-38 142
MsG0380016522.01.T01 MTR_8g099565 65.741 108 37 0 1 108 40 147 1.43e-37 141
MsG0380016522.01.T01 MTR_8g027610 64.423 104 31 2 174 277 324 421 3.44e-36 137
MsG0380016522.01.T01 MTR_8g027610 51.852 108 51 1 1 108 51 157 4.19e-26 108
MsG0380016522.01.T01 MTR_5g009120 61.765 102 36 2 174 273 308 408 3.09e-33 129
MsG0380016522.01.T01 MTR_5g009120 49.565 115 58 0 1 115 44 158 1.02e-28 116
MsG0380016522.01.T01 MTR_7g117395 60.606 99 33 2 175 273 325 417 4.27e-31 123
MsG0380016522.01.T01 MTR_7g117395 50.909 110 52 1 1 108 50 159 7.15e-27 110
MsG0380016522.01.T01 MTR_5g092700 34.375 96 62 1 1 96 15 109 1.31e-11 62.4
MsG0380016522.01.T01 MTR_4g073580 34.375 96 62 1 1 96 15 109 1.31e-11 62.4
MsG0380016522.01.T01 MTR_4g073580 34.375 96 62 1 1 96 15 109 3.38e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016522.01.T01 AT5G24240 43.750 352 116 9 3 273 48 398 1.22e-78 250
MsG0380016522.01.T01 AT5G24240 43.750 352 116 9 3 273 48 398 1.22e-78 250
MsG0380016522.01.T01 AT2G46500 42.618 359 117 10 1 278 48 398 2.11e-77 243
MsG0380016522.01.T01 AT2G46500 42.898 352 114 9 1 273 48 391 4.59e-75 241
MsG0380016522.01.T01 AT2G46500 42.898 352 114 9 1 273 48 391 4.59e-75 241
MsG0380016522.01.T01 AT2G35635 34.375 96 62 1 1 96 15 109 1.52e-11 62.0
MsG0380016522.01.T01 AT1G31340 34.375 96 62 1 1 96 15 109 1.86e-11 62.0

Find 80 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGATTCCCATGCATATTT+TGG 0.148342 3:-84663787 None:intergenic
AAATCTTGTGTTGGTGATTA+TGG 0.244958 3:-84663660 MsG0380016522.01.T01:CDS
AACTGGTCCACAGCTAAATT+TGG 0.266556 3:+84663283 None:intergenic
ACATGGCCCTAGAGCATTTC+CGG 0.274152 3:-84662708 MsG0380016522.01.T01:CDS
ACTAATTAAGGTTACATTAG+AGG 0.275994 3:-84663147 MsG0380016522.01.T01:CDS
CTGAGAATTCAAACCTTAGA+AGG 0.302261 3:-84663738 MsG0380016522.01.T01:CDS
CTCTATGTGGAAAGGAGTTT+GGG 0.314092 3:-84663569 MsG0380016522.01.T01:CDS
ACTCTATGTGGAAAGGAGTT+TGG 0.314421 3:-84663570 MsG0380016522.01.T01:CDS
AATGAGGAGAAGGGGTTTGC+TGG 0.322822 3:-84662862 MsG0380016522.01.T01:CDS
GAAACATTCTTATAACCTTC+AGG 0.323383 3:+84662790 None:intergenic
AGTGGTCCAGGAACTAATTA+AGG 0.338466 3:-84663159 MsG0380016522.01.T01:intron
AATTTAGCTGTGGACCAGTT+AGG 0.343341 3:-84663280 MsG0380016522.01.T01:CDS
TAAACCAGTTGAGAAGGATT+TGG 0.375973 3:-84663344 MsG0380016522.01.T01:CDS
TGGAGTTCCACCAACTGTTA+TGG 0.383320 3:-84662842 MsG0380016522.01.T01:CDS
TTATAGACACTGGCCCTAAC+TGG 0.385868 3:+84663266 None:intergenic
AACTCCAAATCCTTCTCAAC+TGG 0.393740 3:+84663340 None:intergenic
ATCTTAAAGCTATTACTGTT+AGG 0.416564 3:-84663593 MsG0380016522.01.T01:CDS
CCTTCACCATCCACAGAGAT+AGG 0.421446 3:+84662982 None:intergenic
ATCCACAGAGATAGGTAATC+CGG 0.426815 3:+84662990 None:intergenic
ATTTAGCTGTGGACCAGTTA+GGG 0.437270 3:-84663279 MsG0380016522.01.T01:CDS
GATCACTTCAGATGTTTATG+AGG 0.438749 3:-84662750 MsG0380016522.01.T01:CDS
CTAATTAAGGTTACATTAGA+GGG 0.449840 3:-84663146 MsG0380016522.01.T01:CDS
GGAGACGGATTCCATTGCTT+CGG 0.465209 3:-84663766 MsG0380016522.01.T01:CDS
TCTTCCACCGGAAATGCTCT+AGG 0.476110 3:+84662701 None:intergenic
TCAGTGGTGTCTAGCGAGTA+AGG 0.479613 3:+84661721 None:intergenic
TGTTGAGAAGACTAGGAATG+TGG 0.494938 3:-84663541 MsG0380016522.01.T01:CDS
CCTATCTCTGTGGATGGTGA+AGG 0.495612 3:-84662982 MsG0380016522.01.T01:CDS
GGATTTGGAGTTATCAATTG+AGG 0.504557 3:-84663329 MsG0380016522.01.T01:CDS
CGGGGATTATTAAATGCCAT+TGG 0.508525 3:+84663010 None:intergenic
AAGCAGCAGATTGCAAAGAA+AGG 0.514539 3:-84663510 MsG0380016522.01.T01:CDS
TCCACAGAGATAGGTAATCC+GGG 0.521420 3:+84662991 None:intergenic
CAGATGTTTATGAGGAACAT+TGG 0.522116 3:-84662742 MsG0380016522.01.T01:CDS
TAGAGCATTTCCGGTGGAAG+AGG 0.524141 3:-84662699 MsG0380016522.01.T01:intron
GGTCAGGATATCAGATATCA+AGG 0.529903 3:-84663373 MsG0380016522.01.T01:intron
ATCCGTCTCCAAAATATGCA+TGG 0.532128 3:+84663779 None:intergenic
ATGTGTTGCACTTAGTGCTA+AGG 0.534656 3:-84663623 MsG0380016522.01.T01:CDS
ACCTTGTTTGTTATAGACAC+TGG 0.535360 3:+84663256 None:intergenic
CAGATTGCAAAGAAAGGGCG+AGG 0.536334 3:-84663504 MsG0380016522.01.T01:CDS
CATTGGAAGCTGTGAAGACA+TGG 0.538483 3:-84662725 MsG0380016522.01.T01:CDS
TTAAAGAAAGGCACACGAGT+AGG 0.540961 3:-84662958 MsG0380016522.01.T01:CDS
GGTGATTATGGTGTTGCTGA+TGG 0.545033 3:-84663648 MsG0380016522.01.T01:CDS
TATCATAACAATGAGGAGAA+GGG 0.546353 3:-84662871 MsG0380016522.01.T01:CDS
TCTCAGCTTCACCGAAGCAA+TGG 0.550173 3:+84663755 None:intergenic
TAAAGAAAGGCACACGAGTA+GGG 0.552156 3:-84662957 MsG0380016522.01.T01:CDS
ATATCATAACAATGAGGAGA+AGG 0.553276 3:-84662872 MsG0380016522.01.T01:CDS
TCTTATAACCTTCAGGATGG+TGG 0.553628 3:+84662797 None:intergenic
TATGAGCGAGTTCCTTTCCT+CGG 0.554191 3:+84662892 None:intergenic
CAATGGCATTTAATAATCCC+CGG 0.557940 3:-84663009 MsG0380016522.01.T01:CDS
CATCTGACCATAACAGTTGG+TGG 0.558588 3:+84662835 None:intergenic
GCCTACTGATGAGGAGCCAA+TGG 0.558706 3:-84663026 MsG0380016522.01.T01:CDS
GTTGAGAAGACTAGGAATGT+GGG 0.559604 3:-84663540 MsG0380016522.01.T01:CDS
AGCAGCAGATTGCAAAGAAA+GGG 0.562215 3:-84663509 MsG0380016522.01.T01:CDS
TAAGACTAAACCAGTTGAGA+AGG 0.564865 3:-84663350 MsG0380016522.01.T01:CDS
CTTCCACCGGAAATGCTCTA+GGG 0.571119 3:+84662702 None:intergenic
GATGGTGAAGGGTTAAAGAA+AGG 0.581198 3:-84662970 MsG0380016522.01.T01:CDS
CTATCTCTGTGGATGGTGAA+GGG 0.584012 3:-84662981 MsG0380016522.01.T01:CDS
TCCGTCTCCAAAATATGCAT+GGG 0.584051 3:+84663780 None:intergenic
GAGTAAGGCTCTTGAGCTTG+TGG 0.586563 3:+84661736 None:intergenic
GCTCATAACAAATCTTGTGT+TGG 0.591207 3:-84663669 MsG0380016522.01.T01:CDS
ATCATAACAATGAGGAGAAG+GGG 0.592216 3:-84662870 MsG0380016522.01.T01:CDS
CATTCTTATAACCTTCAGGA+TGG 0.598493 3:+84662794 None:intergenic
ATCTTGTGTACCTCTTCCAC+CGG 0.599667 3:+84662689 None:intergenic
TGTTAGGACTCTATGTGGAA+AGG 0.607942 3:-84663577 MsG0380016522.01.T01:CDS
GGATTACCTATCTCTGTGGA+TGG 0.609290 3:-84662988 MsG0380016522.01.T01:CDS
TTTATCCAGTCTAAAACCAA+TGG 0.615858 3:+84662285 None:intergenic
GAAGGATTCCACCATCCTGA+AGG 0.619171 3:-84662805 MsG0380016522.01.T01:CDS
CCCCGGATTACCTATCTCTG+TGG 0.624392 3:-84662992 MsG0380016522.01.T01:CDS
ATTACTGTTAGGACTCTATG+TGG 0.627085 3:-84663582 MsG0380016522.01.T01:CDS
GCCATTGGCTCCTCATCAGT+AGG 0.629819 3:+84663025 None:intergenic
TAATTAAGGTTACATTAGAG+GGG 0.636224 3:-84663145 MsG0380016522.01.T01:intron
GCCAGTGTCTATAACAAACA+AGG 0.651860 3:-84663257 MsG0380016522.01.T01:intron
TACAGTGCCAAATTTAGCTG+TGG 0.652382 3:-84663290 MsG0380016522.01.T01:CDS
AAAGGCACACGAGTAGGGCA+AGG 0.653256 3:-84662952 MsG0380016522.01.T01:CDS
AGATTGCAAAGAAAGGGCGA+GGG 0.653552 3:-84663503 MsG0380016522.01.T01:CDS
GATTGCAAAGAAAGGGCGAG+GGG 0.663152 3:-84663502 MsG0380016522.01.T01:CDS
ATGGTCAGATGCATGCATGA+AGG 0.665746 3:-84662823 MsG0380016522.01.T01:CDS
CCACAGAGATAGGTAATCCG+GGG 0.682895 3:+84662992 None:intergenic
TGGCCCTAGAGCATTTCCGG+TGG 0.696833 3:-84662705 MsG0380016522.01.T01:CDS
TCGCTCATATCATAACAATG+AGG 0.706561 3:-84662878 MsG0380016522.01.T01:CDS
ATGCATCTGACCATAACAGT+TGG 0.716833 3:+84662832 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTGGAACTATTAAAAAT+TGG + Chr3:84662317-84662336 None:intergenic 15.0%
!! ATCTTCACAAATAAAAAAAA+AGG + Chr3:84663005-84663024 None:intergenic 15.0%
!! TAGTATAAAATTAATCTATG+TGG - Chr3:84663593-84663612 MsG0380016522.01.T01:CDS 15.0%
!! TCTTCACAAATAAAAAAAAA+GGG + Chr3:84663004-84663023 None:intergenic 15.0%
!!! AGATTAATTTTATACTAACT+TGG + Chr3:84663590-84663609 None:intergenic 15.0%
!! AGATATTTGTACATATTATC+AGG + Chr3:84663504-84663523 None:intergenic 20.0%
!! CTTCACAAATAAAAAAAAAG+GGG + Chr3:84663003-84663022 None:intergenic 20.0%
!! TTCACAAATAAAAAAAAAGG+GGG + Chr3:84663002-84663021 None:intergenic 20.0%
!!! AATTTTATACTAACTTGGAA+AGG + Chr3:84663585-84663604 None:intergenic 20.0%
!!! CTCATATTTGAAATTTCTAA+AGG - Chr3:84663693-84663712 MsG0380016522.01.T01:CDS 20.0%
!!! GTTTCAAGTAATGTAAAAAT+AGG - Chr3:84662736-84662755 MsG0380016522.01.T01:CDS 20.0%
! AACAATATTGCAATCATTTC+CGG - Chr3:84663374-84663393 MsG0380016522.01.T01:intron 25.0%
! AATAAAAAAAAAGGGGGAAA+CGG + Chr3:84662996-84663015 None:intergenic 25.0%
! ACTAATTAAGGTTACATTAG+AGG - Chr3:84662361-84662380 MsG0380016522.01.T01:intron 25.0%
! ATCTTAAAGCTATTACTGTT+AGG - Chr3:84661915-84661934 MsG0380016522.01.T01:intron 25.0%
! ATTTGTACATATTATCAGGA+AGG + Chr3:84663500-84663519 None:intergenic 25.0%
! CTAATTAAGGTTACATTAGA+GGG - Chr3:84662362-84662381 MsG0380016522.01.T01:intron 25.0%
! CTTTACAAAAAATCCTTCTA+AGG + Chr3:84661786-84661805 None:intergenic 25.0%
! GCAAATAAAAATGAGAATTG+TGG + Chr3:84663155-84663174 None:intergenic 25.0%
! TAATTAAGGTTACATTAGAG+GGG - Chr3:84662363-84662382 MsG0380016522.01.T01:intron 25.0%
!! TATTTGAAATTTCTAAAGGC+TGG - Chr3:84663697-84663716 MsG0380016522.01.T01:CDS 25.0%
!! TTGTTGTTGCTATTCTTAAA+GGG - Chr3:84663669-84663688 MsG0380016522.01.T01:CDS 25.0%
!! TTTTGTAAAGAAACTGAAAC+TGG - Chr3:84661796-84661815 MsG0380016522.01.T01:intron 25.0%
!!! AATTTAAGCTGATGTTGTTT+TGG - Chr3:84663025-84663044 MsG0380016522.01.T01:CDS 25.0%
!!! ATTTAAGCTGATGTTGTTTT+GGG - Chr3:84663026-84663045 MsG0380016522.01.T01:CDS 25.0%
!!! TTTGTTGTTGCTATTCTTAA+AGG - Chr3:84663668-84663687 MsG0380016522.01.T01:CDS 25.0%
AAAGAAATTCTCTAGTCGAT+TGG + Chr3:84662289-84662308 None:intergenic 30.0%
AACCATGATCAATTGGAATA+AGG + Chr3:84662932-84662951 None:intergenic 30.0%
AACGGTTCATTAAACTTTAG+AGG + Chr3:84662978-84662997 None:intergenic 30.0%
ACTAGGAAAAATTCAACCAA+AGG + Chr3:84663477-84663496 None:intergenic 30.0%
ATATCATAACAATGAGGAGA+AGG - Chr3:84662636-84662655 MsG0380016522.01.T01:intron 30.0%
ATGTAACCTTAATTAGTTCC+TGG + Chr3:84662358-84662377 None:intergenic 30.0%
ATGTGGTGATTATTGTAACA+TGG - Chr3:84663610-84663629 MsG0380016522.01.T01:CDS 30.0%
CATGTTAACAGTTATTCTAG+GGG + Chr3:84663094-84663113 None:intergenic 30.0%
GAAACATTCTTATAACCTTC+AGG + Chr3:84662721-84662740 None:intergenic 30.0%
GATTATTGTAACATGGAAGA+TGG - Chr3:84663617-84663636 MsG0380016522.01.T01:CDS 30.0%
GCATGTTAACAGTTATTCTA+GGG + Chr3:84663095-84663114 None:intergenic 30.0%
TATCATAACAATGAGGAGAA+GGG - Chr3:84662637-84662656 MsG0380016522.01.T01:intron 30.0%
TCAATTGGAATAAGGACAAT+TGG + Chr3:84662924-84662943 None:intergenic 30.0%
TGCAGATCAAGAATTAGTAT+GGG - Chr3:84662039-84662058 MsG0380016522.01.T01:intron 30.0%
TGCATGTTAACAGTTATTCT+AGG + Chr3:84663096-84663115 None:intergenic 30.0%
TTGCAGATCAAGAATTAGTA+TGG - Chr3:84662038-84662057 MsG0380016522.01.T01:intron 30.0%
! ATCGACTAGAGAATTTCTTT+TGG - Chr3:84662289-84662308 MsG0380016522.01.T01:CDS 30.0%
! TGTTGTTGCTATTCTTAAAG+GGG - Chr3:84663670-84663689 MsG0380016522.01.T01:CDS 30.0%
! TTTATCCAGTCTAAAACCAA+TGG + Chr3:84663226-84663245 None:intergenic 30.0%
!! AAATCTTGTGTTGGTGATTA+TGG - Chr3:84661848-84661867 MsG0380016522.01.T01:intron 30.0%
!! ACTTGGAAAGGCATTTATAA+TGG + Chr3:84663573-84663592 None:intergenic 30.0%
!!! AAACTGAAACTGGTTTTTGA+AGG - Chr3:84661806-84661825 MsG0380016522.01.T01:intron 30.0%
!!! AACTGAAACTGGTTTTTGAA+GGG - Chr3:84661807-84661826 MsG0380016522.01.T01:intron 30.0%
!!! TTGGTTTTAGACTGGATAAA+CGG - Chr3:84663226-84663245 MsG0380016522.01.T01:intron 30.0%
AAACCAATTCGATCTTCAGA+GGG - Chr3:84662400-84662419 MsG0380016522.01.T01:intron 35.0%
ACATATTATCAGGAAGGACT+AGG + Chr3:84663494-84663513 None:intergenic 35.0%
AGATCAAGAATTAGTATGGG+AGG - Chr3:84662042-84662061 MsG0380016522.01.T01:intron 35.0%
AGGCAATAACCATGATCAAT+TGG + Chr3:84662939-84662958 None:intergenic 35.0%
AGTCTTCAAACTGCAAAATG+GGG + Chr3:84663729-84663748 None:intergenic 35.0%
ATCATAACAATGAGGAGAAG+GGG - Chr3:84662638-84662657 MsG0380016522.01.T01:intron 35.0%
ATTACTGTTAGGACTCTATG+TGG - Chr3:84661926-84661945 MsG0380016522.01.T01:intron 35.0%
CAATATCAAAATTCCACCAG+TGG - Chr3:84662331-84662350 MsG0380016522.01.T01:intron 35.0%
CAATGGCATTTAATAATCCC+CGG - Chr3:84662499-84662518 MsG0380016522.01.T01:intron 35.0%
CAGATGTTTATGAGGAACAT+TGG - Chr3:84662766-84662785 MsG0380016522.01.T01:CDS 35.0%
CAGTCTTCAAACTGCAAAAT+GGG + Chr3:84663730-84663749 None:intergenic 35.0%
CATTCTTATAACCTTCAGGA+TGG + Chr3:84662717-84662736 None:intergenic 35.0%
CTGAGAATTCAAACCTTAGA+AGG - Chr3:84661770-84661789 MsG0380016522.01.T01:CDS 35.0%
GATCAAGAATTAGTATGGGA+GGG - Chr3:84662043-84662062 MsG0380016522.01.T01:intron 35.0%
GATCACTTCAGATGTTTATG+AGG - Chr3:84662758-84662777 MsG0380016522.01.T01:CDS 35.0%
GCTCATAACAAATCTTGTGT+TGG - Chr3:84661839-84661858 MsG0380016522.01.T01:intron 35.0%
GTCCTTATTCCAATTGATCA+TGG - Chr3:84662927-84662946 MsG0380016522.01.T01:CDS 35.0%
GTTAACATGCAGCAAAATTG+TGG - Chr3:84663105-84663124 MsG0380016522.01.T01:intron 35.0%
TAAACCAATTCGATCTTCAG+AGG - Chr3:84662399-84662418 MsG0380016522.01.T01:intron 35.0%
TAAACCAGTTGAGAAGGATT+TGG - Chr3:84662164-84662183 MsG0380016522.01.T01:intron 35.0%
TAAGACTAAACCAGTTGAGA+AGG - Chr3:84662158-84662177 MsG0380016522.01.T01:intron 35.0%
TAAGATAGTAAGCAGTGTAG+TGG + Chr3:84663271-84663290 None:intergenic 35.0%
TACATTAGAGGGGTTAGAAA+AGG - Chr3:84662373-84662392 MsG0380016522.01.T01:intron 35.0%
TATCTCATGCAAGATTCATC+TGG - Chr3:84662435-84662454 MsG0380016522.01.T01:intron 35.0%
TCGCTCATATCATAACAATG+AGG - Chr3:84662630-84662649 MsG0380016522.01.T01:intron 35.0%
TGAAGATCAGAGACTTATTG+AGG - Chr3:84662075-84662094 MsG0380016522.01.T01:intron 35.0%
TTGCAATATTGTTGCTACGA+AGG + Chr3:84663367-84663386 None:intergenic 35.0%
! ATTTTAGATCATCCGAGGAA+AGG - Chr3:84662604-84662623 MsG0380016522.01.T01:intron 35.0%
! CTGAAGATCGAATTGGTTTA+CGG + Chr3:84662399-84662418 None:intergenic 35.0%
! CTTACATTTTAGATCATCCG+AGG - Chr3:84662599-84662618 MsG0380016522.01.T01:intron 35.0%
! GATTTTTCTCAGATTGCCAT+TGG - Chr3:84663207-84663226 MsG0380016522.01.T01:intron 35.0%
! GGATTTGGAGTTATCAATTG+AGG - Chr3:84662179-84662198 MsG0380016522.01.T01:intron 35.0%
! TCAAGTGTAGAGTATTCAAC+AGG + Chr3:84663426-84663445 None:intergenic 35.0%
!! AATTTTCAAGCCTACTGATG+AGG - Chr3:84662473-84662492 MsG0380016522.01.T01:intron 35.0%
!! ACCTTGTTTGTTATAGACAC+TGG + Chr3:84662255-84662274 None:intergenic 35.0%
!! CACTGGTGGAATTTTGATAT+TGG + Chr3:84662333-84662352 None:intergenic 35.0%
!! GGTTTTATGTTGAGAAGACT+AGG - Chr3:84661960-84661979 MsG0380016522.01.T01:intron 35.0%
AACTCCAAATCCTTCTCAAC+TGG + Chr3:84662171-84662190 None:intergenic 40.0%
AACTGGTCCACAGCTAAATT+TGG + Chr3:84662228-84662247 None:intergenic 40.0%
AAGCAGCAGATTGCAAAGAA+AGG - Chr3:84661998-84662017 MsG0380016522.01.T01:intron 40.0%
AATTTAGCTGTGGACCAGTT+AGG - Chr3:84662228-84662247 MsG0380016522.01.T01:intron 40.0%
ACTCTATGTGGAAAGGAGTT+TGG - Chr3:84661938-84661957 MsG0380016522.01.T01:intron 40.0%
AGCAGCAGATTGCAAAGAAA+GGG - Chr3:84661999-84662018 MsG0380016522.01.T01:intron 40.0%
AGGTATTAGAGAGGTTCAAC+AGG + Chr3:84663347-84663366 None:intergenic 40.0%
AGTGGTCCAGGAACTAATTA+AGG - Chr3:84662349-84662368 MsG0380016522.01.T01:intron 40.0%
ATCCACAGAGATAGGTAATC+CGG + Chr3:84662521-84662540 None:intergenic 40.0%
ATGCATCTGACCATAACAGT+TGG + Chr3:84662679-84662698 None:intergenic 40.0%
ATGTGTTGCACTTAGTGCTA+AGG - Chr3:84661885-84661904 MsG0380016522.01.T01:intron 40.0%
ATTTAGCTGTGGACCAGTTA+GGG - Chr3:84662229-84662248 MsG0380016522.01.T01:intron 40.0%
CGGGGATTATTAAATGCCAT+TGG + Chr3:84662501-84662520 None:intergenic 40.0%
CTCTATGTGGAAAGGAGTTT+GGG - Chr3:84661939-84661958 MsG0380016522.01.T01:intron 40.0%
GATGGTGAAGGGTTAAAGAA+AGG - Chr3:84662538-84662557 MsG0380016522.01.T01:intron 40.0%
GCAGTCTTCAAACTGCAAAA+TGG + Chr3:84663731-84663750 None:intergenic 40.0%
GCCAGTGTCTATAACAAACA+AGG - Chr3:84662251-84662270 MsG0380016522.01.T01:intron 40.0%
GGTATTAGAGAGGTTCAACA+GGG + Chr3:84663346-84663365 None:intergenic 40.0%
GGTCAGGATATCAGATATCA+AGG - Chr3:84662135-84662154 MsG0380016522.01.T01:intron 40.0%
GTCTTCAAACTGCAAAATGG+GGG + Chr3:84663728-84663747 None:intergenic 40.0%
GTTGAGAAGACTAGGAATGT+GGG - Chr3:84661968-84661987 MsG0380016522.01.T01:intron 40.0%
TAAATGCAGATAGACACGCT+GGG - Chr3:84662865-84662884 MsG0380016522.01.T01:CDS 40.0%
TACAGTGCCAAATTTAGCTG+TGG - Chr3:84662218-84662237 MsG0380016522.01.T01:intron 40.0%
TCTTATAACCTTCAGGATGG+TGG + Chr3:84662714-84662733 None:intergenic 40.0%
TGTTAGGACTCTATGTGGAA+AGG - Chr3:84661931-84661950 MsG0380016522.01.T01:intron 40.0%
TGTTGAGAAGACTAGGAATG+TGG - Chr3:84661967-84661986 MsG0380016522.01.T01:intron 40.0%
TTAATTAGTTCCTGGACCAC+TGG + Chr3:84662350-84662369 None:intergenic 40.0%
TTGCACACTCTCTATACCTT+TGG - Chr3:84663458-84663477 MsG0380016522.01.T01:intron 40.0%
! CTGTGATTCATTTGTTGGTC+AGG - Chr3:84662119-84662138 MsG0380016522.01.T01:intron 40.0%
! GTATAAATGACGAGCATTGC+CGG + Chr3:84663396-84663415 None:intergenic 40.0%
! TAAAGAAAGGCACACGAGTA+GGG - Chr3:84662551-84662570 MsG0380016522.01.T01:intron 40.0%
! TTAAAGAAAGGCACACGAGT+AGG - Chr3:84662550-84662569 MsG0380016522.01.T01:intron 40.0%
! TTGAAGACTGCACTTTTGAC+TGG - Chr3:84663740-84663759 MsG0380016522.01.T01:CDS 40.0%
!! GCACTTTTGACTGGTTATAC+TGG - Chr3:84663749-84663768 MsG0380016522.01.T01:CDS 40.0%
!! GGTTTTTGAAGGGAAGGAAT+TGG - Chr3:84661817-84661836 MsG0380016522.01.T01:intron 40.0%
!! TTGCTACGAAGGTATTAGAG+AGG + Chr3:84663356-84663375 None:intergenic 40.0%
!!! AACATTTTGGTTGCCAAGAG+TGG - Chr3:84662888-84662907 MsG0380016522.01.T01:CDS 40.0%
!!! GAAACTGGTTTTTGAAGGGA+AGG - Chr3:84661811-84661830 MsG0380016522.01.T01:intron 40.0%
!!! GATTGCCATTGGTTTTAGAC+TGG - Chr3:84663218-84663237 MsG0380016522.01.T01:intron 40.0%
!!! TGATGTTGTTTTGGGCAACT+TGG - Chr3:84663034-84663053 MsG0380016522.01.T01:intron 40.0%
AGAATTAGTATGGGAGGGTG+AGG - Chr3:84662048-84662067 MsG0380016522.01.T01:intron 45.0%
AGATCTCTGTGCTGGATATG+AGG - Chr3:84662838-84662857 MsG0380016522.01.T01:CDS 45.0%
AGATTGCAAAGAAAGGGCGA+GGG - Chr3:84662005-84662024 MsG0380016522.01.T01:intron 45.0%
ATCTTGTGTACCTCTTCCAC+CGG + Chr3:84662822-84662841 None:intergenic 45.0%
ATGGTCAGATGCATGCATGA+AGG - Chr3:84662685-84662704 MsG0380016522.01.T01:intron 45.0%
ATTCGATCTTCAGAGGGATC+AGG - Chr3:84662406-84662425 MsG0380016522.01.T01:intron 45.0%
CATCTGACCATAACAGTTGG+TGG + Chr3:84662676-84662695 None:intergenic 45.0%
CATTGGAAGCTGTGAAGACA+TGG - Chr3:84662783-84662802 MsG0380016522.01.T01:CDS 45.0%
CGACGCTGTGATTCATTTGT+TGG - Chr3:84662114-84662133 MsG0380016522.01.T01:intron 45.0%
CTATCTCTGTGGATGGTGAA+GGG - Chr3:84662527-84662546 MsG0380016522.01.T01:intron 45.0%
GGATTACCTATCTCTGTGGA+TGG - Chr3:84662520-84662539 MsG0380016522.01.T01:intron 45.0%
GTAAATGCAGATAGACACGC+TGG - Chr3:84662864-84662883 MsG0380016522.01.T01:CDS 45.0%
TATGAGCGAGTTCCTTTCCT+CGG + Chr3:84662619-84662638 None:intergenic 45.0%
TCCACAGAGATAGGTAATCC+GGG + Chr3:84662520-84662539 None:intergenic 45.0%
TGGAGTTCCACCAACTGTTA+TGG - Chr3:84662666-84662685 MsG0380016522.01.T01:intron 45.0%
TTATAGACACTGGCCCTAAC+TGG + Chr3:84662245-84662264 None:intergenic 45.0%
TTCGATCTTCAGAGGGATCA+GGG - Chr3:84662407-84662426 MsG0380016522.01.T01:intron 45.0%
! GATCCCTCTGAAGATCGAAT+TGG + Chr3:84662406-84662425 None:intergenic 45.0%
! TAGACACGCTGGGAACATTT+TGG - Chr3:84662875-84662894 MsG0380016522.01.T01:CDS 45.0%
!! GGTGATTATGGTGTTGCTGA+TGG - Chr3:84661860-84661879 MsG0380016522.01.T01:intron 45.0%
AATGAGGAGAAGGGGTTTGC+TGG - Chr3:84662646-84662665 MsG0380016522.01.T01:intron 50.0%
ATTAGTTCCTGGACCACTGG+TGG + Chr3:84662347-84662366 None:intergenic 50.0%
CAAAATTCCACCAGTGGTCC+AGG - Chr3:84662337-84662356 MsG0380016522.01.T01:intron 50.0%
CAGATTGCAAAGAAAGGGCG+AGG - Chr3:84662004-84662023 MsG0380016522.01.T01:intron 50.0%
CCACAGAGATAGGTAATCCG+GGG + Chr3:84662519-84662538 None:intergenic 50.0%
CCTATCTCTGTGGATGGTGA+AGG - Chr3:84662526-84662545 MsG0380016522.01.T01:intron 50.0%
CCTTCACCATCCACAGAGAT+AGG + Chr3:84662529-84662548 None:intergenic 50.0%
CTCTGTGCTGGATATGAGGT+TGG - Chr3:84662842-84662861 MsG0380016522.01.T01:CDS 50.0%
CTTCCACCGGAAATGCTCTA+GGG + Chr3:84662809-84662828 None:intergenic 50.0%
GAAGGATTCCACCATCCTGA+AGG - Chr3:84662703-84662722 MsG0380016522.01.T01:CDS 50.0%
GAGTAAGGCTCTTGAGCTTG+TGG + Chr3:84663775-84663794 None:intergenic 50.0%
GATTGCAAAGAAAGGGCGAG+GGG - Chr3:84662006-84662025 MsG0380016522.01.T01:intron 50.0%
GGTACACAAGATCTCTGTGC+TGG - Chr3:84662830-84662849 MsG0380016522.01.T01:CDS 50.0%
GTTGCCAAGAGTGGTGAAGA+TGG - Chr3:84662897-84662916 MsG0380016522.01.T01:CDS 50.0%
TCGATCTTCAGAGGGATCAG+GGG - Chr3:84662408-84662427 MsG0380016522.01.T01:intron 50.0%
TCTCAGCTTCACCGAAGCAA+TGG + Chr3:84661756-84661775 None:intergenic 50.0%
TCTTCCACCGGAAATGCTCT+AGG + Chr3:84662810-84662829 None:intergenic 50.0%
TGGACCATCTTCACCACTCT+TGG + Chr3:84662904-84662923 None:intergenic 50.0%
TTTAGAGGACTCACGCTCTC+GGG + Chr3:84662963-84662982 None:intergenic 50.0%
! ACATGGCCCTAGAGCATTTC+CGG - Chr3:84662800-84662819 MsG0380016522.01.T01:CDS 50.0%
! CTTTAGAGGACTCACGCTCT+CGG + Chr3:84662964-84662983 None:intergenic 50.0%
! GGAGACGGATTCCATTGCTT+CGG - Chr3:84661742-84661761 MsG0380016522.01.T01:CDS 50.0%
! TAGAGCATTTCCGGTGGAAG+AGG - Chr3:84662809-84662828 MsG0380016522.01.T01:CDS 50.0%
CCCCGGATTACCTATCTCTG+TGG - Chr3:84662516-84662535 MsG0380016522.01.T01:intron 55.0%
GCCTACTGATGAGGAGCCAA+TGG - Chr3:84662482-84662501 MsG0380016522.01.T01:intron 55.0%
! AAAGGCACACGAGTAGGGCA+AGG - Chr3:84662556-84662575 MsG0380016522.01.T01:intron 55.0%
!! GCCATTGGCTCCTCATCAGT+AGG + Chr3:84662486-84662505 None:intergenic 55.0%
! TGGCCCTAGAGCATTTCCGG+TGG - Chr3:84662803-84662822 MsG0380016522.01.T01:CDS 60.0%
GAGGACTCACGCTCTCGGGA+AGG + Chr3:84662959-84662978 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 84661731 84663799 84661731 ID=MsG0380016522.01;Name=MsG0380016522.01
Chr3 mRNA 84661731 84663799 84661731 ID=MsG0380016522.01.T01;Parent=MsG0380016522.01;Name=MsG0380016522.01.T01;_AED=0.28;_eAED=0.34;_QI=0|0|0|0.83|1|1|6|0|318
Chr3 exon 84663476 84663799 84663476 ID=MsG0380016522.01.T01:exon:11176;Parent=MsG0380016522.01.T01
Chr3 exon 84663258 84663389 84663258 ID=MsG0380016522.01.T01:exon:11175;Parent=MsG0380016522.01.T01
Chr3 exon 84663146 84663171 84663146 ID=MsG0380016522.01.T01:exon:11174;Parent=MsG0380016522.01.T01
Chr3 exon 84662700 84663047 84662700 ID=MsG0380016522.01.T01:exon:11173;Parent=MsG0380016522.01.T01
Chr3 exon 84662283 84662348 84662283 ID=MsG0380016522.01.T01:exon:11172;Parent=MsG0380016522.01.T01
Chr3 exon 84661731 84661791 84661731 ID=MsG0380016522.01.T01:exon:11171;Parent=MsG0380016522.01.T01
Chr3 CDS 84663476 84663799 84663476 ID=MsG0380016522.01.T01:cds;Parent=MsG0380016522.01.T01
Chr3 CDS 84663258 84663389 84663258 ID=MsG0380016522.01.T01:cds;Parent=MsG0380016522.01.T01
Chr3 CDS 84663146 84663171 84663146 ID=MsG0380016522.01.T01:cds;Parent=MsG0380016522.01.T01
Chr3 CDS 84662700 84663047 84662700 ID=MsG0380016522.01.T01:cds;Parent=MsG0380016522.01.T01
Chr3 CDS 84662283 84662348 84662283 ID=MsG0380016522.01.T01:cds;Parent=MsG0380016522.01.T01
Chr3 CDS 84661731 84661791 84661731 ID=MsG0380016522.01.T01:cds;Parent=MsG0380016522.01.T01
Gene Sequence

>MsG0380016522.01.T01

ATGCATATTTTGGAGACGGATTCCATTGCTTCGGTGAAGCTGAGAATTCAAACCTTAGAAGGATTTTTTGTAAAGAAACTGAAACTGGTTTTTGAAGGGAAGGAATTGGCTCATAACAAATCTTGTGTTGGTGATTATGGTGTTGCTGATGGAAATGTGTTGCACTTAGTGCTAAGGCTTTCTGATCTTAAAGCTATTACTGTTAGGACTCTATGTGGAAAGGAGTTTGGGTTTTATGTTGAGAAGACTAGGAATGTGGGTTATGTGAAGCAGCAGATTGCAAAGAAAGGGCGAGGGGTCTTCGATCTTGCAGATCAAGAATTAGATATCAGATATCAAGGTAAGACTAAACCAGTTGAGAAGGATTTGGAGTTATCAATTGAGGCATTGTTTGCACATGATACAGTGCCAAATTTAGCTGTGGACCAGTTAGGGCCAGTGTCTATAACAAACAAGGAACTAATTAAGGTTACATTAGAGGGCCTACTGATGAGGAGCCAATGGCATTTAATAATCCCCGGATTACCTATCTCTGTGGATGGTGAAGGGTTAAAGAAAGGCACACGAGTAGGGCAAGGTGCATTGAGAGAAGTTGCAGCTTACATTTTAGATCATCCGAGGAAAGGAACTCGCTCATATCATAACAATGAGGAGAAGGGGTTTGCTGGAGTTCCACCAACTGTTATGGTCAGATGCATGCATGAAGGATTCCACCATCCTGAAGGTTATAAGAATGTTTCAAGTAATGTAAAAATAGGATCACTTCAGATGTTTATGAGGAACATTGGAAGCTGTGAAGACATGGCCCTAGAGCATTTCCGGTGGAAGAGATTTGTGTCACATTCAGATGATAATGATTTTTCTCAGATTGCCATTGGTTTTAGACTGGATAAACGTTTGAAGACTGCACTTTTGACTGGTTATACTGGCCACAAGCTCAAGAGCCTTACTCGCTAG
Protein sequence

>MsG0380016522.01.T01

MHILETDSIASVKLRIQTLEGFFVKKLKLVFEGKELAHNKSCVGDYGVADGNVLHLVLRLSDLKAITVRTLCGKEFGFYVEKTRNVGYVKQQIAKKGRGVFDLADQELDIRYQGKTKPVEKDLELSIEALFAHDTVPNLAVDQLGPVSITNKELIKVTLEGLLMRSQWHLIIPGLPISVDGEGLKKGTRVGQGALREVAAYILDHPRKGTRSYHNNEEKGFAGVPPTVMVRCMHEGFHHPEGYKNVSSNVKIGSLQMFMRNIGSCEDMALEHFRWKRFVSHSDDNDFSQIAIGFRLDKRLKTALLTGYTGHKLKSLTR*