AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016616.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016616.01.T01 MTR_3g090160 84.290 331 31 2 32 345 6 332 0.0 525
MsG0380016616.01.T01 MTR_7g088050 82.440 336 36 4 29 345 1 332 0.0 512
MsG0380016616.01.T01 MTR_7g088050 93.886 229 9 2 29 256 1 225 1.55e-143 405
MsG0380016616.01.T01 MTR_2g030160 35.458 251 144 6 28 268 173 415 2.23e-33 131
MsG0380016616.01.T01 MTR_2g030630 36.000 250 140 6 29 268 666 905 3.80e-33 130
MsG0380016616.01.T01 MTR_8g088370 36.449 214 118 4 66 268 742 948 6.10e-32 127
MsG0380016616.01.T01 MTR_4g119910 36.364 209 115 4 66 263 623 824 1.64e-30 122
MsG0380016616.01.T01 MTR_4g115710 32.367 207 122 5 66 263 176 373 3.80e-22 98.2
MsG0380016616.01.T01 MTR_4g115710 32.367 207 122 5 66 263 42 239 3.84e-22 97.8
MsG0380016616.01.T01 MTR_4g115710 32.367 207 122 5 66 263 177 374 3.84e-22 98.2
MsG0380016616.01.T01 MTR_4g115710 32.367 207 122 5 66 263 132 329 3.95e-22 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016616.01.T01 AT5G05000 59.236 314 102 5 29 322 1 308 5.75e-128 369
MsG0380016616.01.T01 AT5G05000 59.236 314 102 5 29 322 1 308 5.75e-128 369
MsG0380016616.01.T01 AT5G05000 59.236 314 102 5 29 322 1 308 5.75e-128 369
MsG0380016616.01.T01 AT1G02280 56.757 296 107 3 35 313 5 296 8.16e-113 330
MsG0380016616.01.T01 AT1G02280 56.757 296 107 3 35 313 5 296 8.16e-113 330
MsG0380016616.01.T01 AT3G16620 35.600 250 141 6 29 268 418 657 1.07e-35 138
MsG0380016616.01.T01 AT2G16640 36.508 252 136 7 29 268 536 775 3.41e-34 134
MsG0380016616.01.T01 AT2G16640 36.508 252 136 7 29 268 536 775 3.41e-34 134
MsG0380016616.01.T01 AT2G16640 36.508 252 136 7 29 268 536 775 3.41e-34 134
MsG0380016616.01.T01 AT4G02510 37.333 225 129 4 47 263 836 1056 1.74e-29 120
MsG0380016616.01.T01 AT4G02510 37.333 225 129 4 47 263 836 1056 1.74e-29 120
MsG0380016616.01.T01 AT4G02510 37.333 225 129 4 47 263 836 1056 1.74e-29 120
MsG0380016616.01.T01 AT4G02510 37.333 225 129 4 47 263 836 1056 1.74e-29 120
MsG0380016616.01.T01 AT5G20300 34.135 208 120 5 66 265 38 236 9.04e-23 99.8
MsG0380016616.01.T01 AT5G20300 34.135 208 120 5 66 265 166 364 1.22e-22 99.8
MsG0380016616.01.T01 AT5G20300 34.135 208 120 5 66 265 166 364 1.22e-22 99.8
MsG0380016616.01.T01 AT5G20300 34.135 208 120 5 66 265 166 364 1.22e-22 99.8
MsG0380016616.01.T01 AT5G20300 34.135 208 120 5 66 265 166 364 1.22e-22 99.8

Find 80 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAGCAGCATCCTTCTTTA+AGG 0.162587 3:+85753923 None:intergenic
AACCAAGTTGCTTGAACTTT+TGG 0.223688 3:-85754898 MsG0380016616.01.T01:CDS
ATGGAATTAGTGGAACATTA+TGG 0.310688 3:-85754979 MsG0380016616.01.T01:intron
GGTGGCGATTAGTCCCTTTC+AGG 0.325522 3:-85754502 MsG0380016616.01.T01:CDS
ATGCAATTTCTGTGATTGTT+TGG 0.334323 3:+85753287 None:intergenic
AGCAACTTGGTTTGCGTAGC+AGG 0.344554 3:+85754909 None:intergenic
CACATAAAGCAGAACATCTA+TGG 0.349609 3:+85754148 None:intergenic
AAGAATGAATCTTACCAAAA+AGG 0.351485 3:-85756345 None:intergenic
ATCCATCCGGTGGAGAGAAC+TGG 0.362190 3:+85754012 None:intergenic
AAAGCTATAACTGATAGTTT+TGG 0.367549 3:-85754077 MsG0380016616.01.T01:CDS
TTCTTCCAAATGGGATTGCT+TGG 0.375270 3:-85753324 MsG0380016616.01.T01:CDS
GGAATCCAAGCAATCCCATT+TGG 0.391991 3:+85753319 None:intergenic
ACCTTTCCCCATCACAAGTA+TGG 0.399619 3:+85754572 None:intergenic
CTTGCTCGCGACACCATAAC+AGG 0.401022 3:+85754375 None:intergenic
TGGTGACAGGTTCTTCCAAA+TGG 0.415072 3:-85753334 MsG0380016616.01.T01:intron
TATAATTTGTAACAGAGCTT+CGG 0.416999 3:+85753959 None:intergenic
CAGGTAATACTTTCCTGTGA+TGG 0.417245 3:-85754483 MsG0380016616.01.T01:intron
TCAACTGTGAACTCTATCAT+TGG 0.422316 3:-85754534 MsG0380016616.01.T01:CDS
CAACTGTGAACTCTATCATT+GGG 0.422468 3:-85754533 MsG0380016616.01.T01:CDS
AAAACTATCAGTTATAGCTT+TGG 0.422774 3:+85754079 None:intergenic
TTTGAGAAGAACTCATCATA+AGG 0.426532 3:+85753987 None:intergenic
CTTAAAGAAGGATGCTGCTC+AGG 0.431808 3:-85753922 MsG0380016616.01.T01:intron
CAACAAGTTCGTGAGTGGTC+TGG 0.434624 3:-85754948 MsG0380016616.01.T01:CDS
GGAAGGGCCAAGACCTGTTA+TGG 0.439208 3:-85754388 MsG0380016616.01.T01:intron
CATAGATGTTCTGCTTTATG+TGG 0.447325 3:-85754147 MsG0380016616.01.T01:CDS
TCCCAAAAGTTCAAGCAACT+TGG 0.459219 3:+85754896 None:intergenic
CTGTTACAAATTATAAAATC+AGG 0.473222 3:-85753951 MsG0380016616.01.T01:CDS
GATACTCCTGGTCTTATTGA+AGG 0.474002 3:-85754327 MsG0380016616.01.T01:CDS
TCTTGGGAGACGCGTGATGT+AGG 0.482263 3:-85753005 MsG0380016616.01.T01:CDS
AGAAGCGTGGTGCAGGTGTT+CGG 0.485729 3:-85752935 MsG0380016616.01.T01:CDS
CGTAAAGAGAAGCGTGGTGC+AGG 0.486556 3:-85752942 MsG0380016616.01.T01:CDS
CAGGAAAGTATTACCTGAAA+GGG 0.490123 3:+85754489 None:intergenic
CGCGACACCATAACAGGTCT+TGG 0.490128 3:+85754381 None:intergenic
GGTGACAGGTTCTTCCAAAT+GGG 0.497063 3:-85753333 MsG0380016616.01.T01:intron
ATGGTGTCGCGAGCAAGGGC+TGG 0.505340 3:-85754369 MsG0380016616.01.T01:CDS
CTCTATCATTGGGGAAAGAG+TGG 0.517485 3:-85754523 MsG0380016616.01.T01:CDS
CTCCTTGACCATACTTGTGA+TGG 0.518881 3:-85754580 MsG0380016616.01.T01:CDS
ATCAGGTGCCTCCTTAAAGA+AGG 0.518918 3:-85753934 MsG0380016616.01.T01:CDS
CTGTTATGGTGTCGCGAGCA+AGG 0.521500 3:-85754374 MsG0380016616.01.T01:CDS
TCCATCCGGTGGAGAGAACT+GGG 0.522554 3:+85754013 None:intergenic
TTTCTGTGATTGTTTGGACT+AGG 0.530196 3:+85753293 None:intergenic
TACTCCTGGTCTTATTGAAG+GGG 0.530787 3:-85754325 MsG0380016616.01.T01:CDS
ATACTCCTGGTCTTATTGAA+GGG 0.535356 3:-85754326 MsG0380016616.01.T01:CDS
CATCTATGGTCTTGTCCAGA+AGG 0.535370 3:+85754162 None:intergenic
ACCACCCTGCAAACCATCAC+AGG 0.536483 3:+85754470 None:intergenic
TCATCATAAGGCAATCCATC+CGG 0.539414 3:+85753999 None:intergenic
TCCTTGACCATACTTGTGAT+GGG 0.544068 3:-85754579 MsG0380016616.01.T01:CDS
TGTTATGGTGTCGCGAGCAA+GGG 0.561068 3:-85754373 MsG0380016616.01.T01:CDS
TTTGGGAAAACTTAAGCAAG+AGG 0.562421 3:-85754880 MsG0380016616.01.T01:intron
ACAGGAAAGTATTACCTGAA+AGG 0.562436 3:+85754488 None:intergenic
TGGCGCTTGATATCATAAAA+CGG 0.566713 3:-85754287 MsG0380016616.01.T01:intron
CCCCATCACAAGTATGGTCA+AGG 0.568031 3:+85754578 None:intergenic
GGAAGAATAAGATAAACAAG+AGG 0.568239 3:+85753100 None:intergenic
TTGAACATTATCGATACTCC+TGG 0.568301 3:-85754339 MsG0380016616.01.T01:CDS
TTCGATCAAGACAACAGGAA+TGG 0.570397 3:+85753487 None:intergenic
GCCCAGTTCTCTCCACCGGA+TGG 0.572612 3:-85754014 MsG0380016616.01.T01:CDS
AGCAGCATCCTTCTTTAAGG+AGG 0.587588 3:+85753926 None:intergenic
ACCATACTTGTGATGGGGAA+AGG 0.589914 3:-85754573 MsG0380016616.01.T01:CDS
TGTGTATCGAGTAGACAGCT+TGG 0.593621 3:-85754114 MsG0380016616.01.T01:CDS
GTGATTGTTTGGACTAGGAG+AGG 0.597809 3:+85753298 None:intergenic
ACATGCCCAGTTCTCTCCAC+CGG 0.601778 3:-85754018 MsG0380016616.01.T01:CDS
CAGAAAGAGACTCGTGAAGG+TGG 0.612140 3:-85752978 MsG0380016616.01.T01:CDS
TTGTCTTGATCGAAAACAGT+GGG 0.615762 3:-85753478 MsG0380016616.01.T01:CDS
CTCAACAACAAGTTCGTGAG+TGG 0.619463 3:-85754953 MsG0380016616.01.T01:CDS
GTTGACTCTTGAAATTGTCA+TGG 0.624127 3:-85756288 MsG0380016616.01.T01:intron
GTGATGGGGAAAGGTGGTGT+CGG 0.627121 3:-85754564 MsG0380016616.01.T01:CDS
TGGCAAAGGAATATGGAACA+AGG 0.632914 3:-85754057 MsG0380016616.01.T01:CDS
TACATCACGCGTCTCCCAAG+AGG 0.634164 3:+85753007 None:intergenic
AACTGTGAACTCTATCATTG+GGG 0.637041 3:-85754532 MsG0380016616.01.T01:CDS
ACATCACGCGTCTCCCAAGA+GGG 0.641586 3:+85753008 None:intergenic
TCATAAGGCAATCCATCCGG+TGG 0.644476 3:+85754002 None:intergenic
CCTTGACCATACTTGTGATG+GGG 0.651438 3:-85754578 MsG0380016616.01.T01:CDS
TATCATTGGGGAAAGAGTGG+TGG 0.661038 3:-85754520 MsG0380016616.01.T01:CDS
ACTCCTGGTCTTATTGAAGG+GGG 0.667095 3:-85754324 MsG0380016616.01.T01:CDS
TCTTGATCGAAAACAGTGGG+AGG 0.675835 3:-85753475 MsG0380016616.01.T01:CDS
GTTGTCTTGATCGAAAACAG+TGG 0.698158 3:-85753479 MsG0380016616.01.T01:CDS
ATACTTGTGATGGGGAAAGG+TGG 0.702252 3:-85754570 MsG0380016616.01.T01:CDS
GTTCAGAAAGAGACTCGTGA+AGG 0.721867 3:-85752981 MsG0380016616.01.T01:CDS
CTACTCGATACACATCTAAG+CGG 0.725484 3:+85754123 None:intergenic
GATACGCGTAAAGAGAAGCG+TGG 0.744582 3:-85752948 MsG0380016616.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAAACTATTATATGT+GGG + Chr3:85754040-85754059 None:intergenic 10.0%
!! TTTAAAAAAACTATTATATG+TGG + Chr3:85754041-85754060 None:intergenic 10.0%
!!! TCATTATAATTTTTTAATAG+TGG - Chr3:85753600-85753619 MsG0380016616.01.T01:intron 10.0%
!! AATACCAAAAAAAAAAGAAA+AGG + Chr3:85755049-85755068 None:intergenic 15.0%
!!! AAAATTACTTTATTTGTGAA+TGG - Chr3:85755579-85755598 MsG0380016616.01.T01:intron 15.0%
!!! AACAATTTTTCATGAAATTA+TGG - Chr3:85754461-85754480 MsG0380016616.01.T01:intron 15.0%
!!! ATATATAGTAATTTTCATCA+GGG - Chr3:85755526-85755545 MsG0380016616.01.T01:intron 15.0%
!!! CAAACAAAAAATAACTTTTT+AGG - Chr3:85753549-85753568 MsG0380016616.01.T01:intron 15.0%
!!! CTAAAAAGTTAAAACTTTTA+AGG - Chr3:85755419-85755438 MsG0380016616.01.T01:intron 15.0%
!!! TAATAGTTTTTTTAAATCTC+AGG - Chr3:85754045-85754064 MsG0380016616.01.T01:CDS 15.0%
!!! TATATATAGTAATTTTCATC+AGG - Chr3:85755525-85755544 MsG0380016616.01.T01:intron 15.0%
!! AGAAATATAACTCATCAATT+TGG + Chr3:85753915-85753934 None:intergenic 20.0%
!! ATTCAAAAATTGAAAGAGAA+AGG + Chr3:85754207-85754226 None:intergenic 20.0%
!! CTGTTACAAATTATAAAATC+AGG - Chr3:85755319-85755338 MsG0380016616.01.T01:intron 20.0%
!! GATTATAACTTCTATATGTT+TGG - Chr3:85753961-85753980 MsG0380016616.01.T01:CDS 20.0%
!!! AAATAGTTTTTTACAACACA+AGG + Chr3:85754847-85754866 None:intergenic 20.0%
!!! GAATCCTTTTCTTTTTTTTT+TGG - Chr3:85755042-85755061 MsG0380016616.01.T01:intron 20.0%
!!! GTATTTTACATCTATCATAA+TGG + Chr3:85753462-85753481 None:intergenic 20.0%
!!! TATATAGTAATTTTCATCAG+GGG - Chr3:85755527-85755546 MsG0380016616.01.T01:intron 20.0%
!!! TATTACTTCCTTTAAAAGTA+GGG - Chr3:85755622-85755641 MsG0380016616.01.T01:intron 20.0%
!!! TTATTACTTCCTTTAAAAGT+AGG - Chr3:85755621-85755640 MsG0380016616.01.T01:intron 20.0%
!!! TTTCTTCTTTTATAAACATC+AGG - Chr3:85756139-85756158 MsG0380016616.01.T01:intron 20.0%
!!! TTTTTGTTTGTAAATGTGAT+CGG + Chr3:85753539-85753558 None:intergenic 20.0%
! AAAACTATCAGTTATAGCTT+TGG + Chr3:85755194-85755213 None:intergenic 25.0%
! AAACAACATATTTATGAGGT+TGG - Chr3:85753405-85753424 MsG0380016616.01.T01:intron 25.0%
! AACAACATATTTATGAGGTT+GGG - Chr3:85753406-85753425 MsG0380016616.01.T01:intron 25.0%
! ACTATATATAATCAACCAAG+TGG + Chr3:85755515-85755534 None:intergenic 25.0%
! AGATAAAAGAACAACAACAA+TGG + Chr3:85754156-85754175 None:intergenic 25.0%
! ATATTGTAGTGAAACCTAAT+TGG + Chr3:85754236-85754255 None:intergenic 25.0%
! ATCAGATTAAGCAAGATAAA+CGG + Chr3:85755900-85755919 None:intergenic 25.0%
! ATCCTTAAAAAATACATCTC+AGG - Chr3:85755396-85755415 MsG0380016616.01.T01:intron 25.0%
! ATTGTGTGCTAAAGATAATT+TGG + Chr3:85753376-85753395 None:intergenic 25.0%
! CAAAAATGAAACTGATGAAA+AGG - Chr3:85755823-85755842 MsG0380016616.01.T01:intron 25.0%
! GAAGATTGATTGAGAAAAAA+AGG - Chr3:85753031-85753050 MsG0380016616.01.T01:CDS 25.0%
! GTAGAAACAACATATTTATG+AGG - Chr3:85753401-85753420 MsG0380016616.01.T01:intron 25.0%
! TAGTATGACTCAAAATTTGA+TGG - Chr3:85753683-85753702 MsG0380016616.01.T01:intron 25.0%
!! AAAGCTATAACTGATAGTTT+TGG - Chr3:85755193-85755212 MsG0380016616.01.T01:intron 25.0%
!! TATAATTTGTAACAGAGCTT+CGG + Chr3:85755314-85755333 None:intergenic 25.0%
!! TTTTGAATTTCTCACCAATT+AGG - Chr3:85754219-85754238 MsG0380016616.01.T01:intron 25.0%
!!! GAGATGTATTTTTTAAGGAT+AGG + Chr3:85755396-85755415 None:intergenic 25.0%
!!! GATGCAAACATATTTTGAAA+GGG - Chr3:85753816-85753835 MsG0380016616.01.T01:intron 25.0%
!!! TATATTTTTGTACCGTATGA+AGG - Chr3:85753786-85753805 MsG0380016616.01.T01:intron 25.0%
!!! TGATGCAAACATATTTTGAA+AGG - Chr3:85753815-85753834 MsG0380016616.01.T01:intron 25.0%
AAATCCAAATACTTCGAATC+CGG + Chr3:85755447-85755466 None:intergenic 30.0%
AACAAACACATTGTGATAGT+TGG + Chr3:85754649-85754668 None:intergenic 30.0%
AAGGAAGCTACAAAGAAAAA+GGG + Chr3:85755092-85755111 None:intergenic 30.0%
AATAGAGAAGACAACTTATC+TGG + Chr3:85754117-85754136 None:intergenic 30.0%
AATCTTACCAAAAAGGAAGA+TGG - Chr3:85752932-85752951 MsG0380016616.01.T01:CDS 30.0%
AATGAAACTGATGAAAAGGT+TGG - Chr3:85755827-85755846 MsG0380016616.01.T01:intron 30.0%
ACAACATATTTATGAGGTTG+GGG - Chr3:85753407-85753426 MsG0380016616.01.T01:intron 30.0%
ATGCAATTTCTGTGATTGTT+TGG + Chr3:85755986-85756005 None:intergenic 30.0%
ATGGAATTAGTGGAACATTA+TGG - Chr3:85754291-85754310 MsG0380016616.01.T01:CDS 30.0%
ATTGAAAGAGAAAGGAAAAG+TGG + Chr3:85754199-85754218 None:intergenic 30.0%
CCAATAATAAACTTGATGTG+TGG + Chr3:85754007-85754026 None:intergenic 30.0%
CCACACATCAAGTTTATTAT+TGG - Chr3:85754004-85754023 MsG0380016616.01.T01:CDS 30.0%
CCTATAATTGTGGCAAAATA+AGG - Chr3:85754581-85754600 MsG0380016616.01.T01:CDS 30.0%
GAGTGCAATAATAATTCAAG+AGG + Chr3:85754436-85754455 None:intergenic 30.0%
GATAAAAGAGGAATAAGGAA+AGG + Chr3:85755874-85755893 None:intergenic 30.0%
GCTAAAGATAATTTGGACTA+AGG + Chr3:85753369-85753388 None:intergenic 30.0%
GGAAGAATAAGATAAACAAG+AGG + Chr3:85756173-85756192 None:intergenic 30.0%
GTTGACAAGAATTTGATTGA+CGG - Chr3:85756030-85756049 MsG0380016616.01.T01:intron 30.0%
TAAAAGAACAACAACAATGG+TGG + Chr3:85754153-85754172 None:intergenic 30.0%
TAATGAAAAAAAGCCCTCTT+GGG - Chr3:85756249-85756268 MsG0380016616.01.T01:intron 30.0%
TACCACTATAATTGAAGTCA+CGG + Chr3:85754495-85754514 None:intergenic 30.0%
TAGGAACAAGAGAAACAAAA+AGG + Chr3:85754087-85754106 None:intergenic 30.0%
TCAGATTAAGCAAGATAAAC+GGG + Chr3:85755899-85755918 None:intergenic 30.0%
TGATTGAGAAAATATGTGCA+TGG - Chr3:85755916-85755935 MsG0380016616.01.T01:intron 30.0%
TTGATGCACATATTCTTTCA+TGG - Chr3:85753851-85753870 MsG0380016616.01.T01:intron 30.0%
TTTGAGAAGAACTCATCATA+AGG + Chr3:85755286-85755305 None:intergenic 30.0%
! AGTTTTTCTACATTGCATGT+TGG + Chr3:85753174-85753193 None:intergenic 30.0%
! CTATTTTCATCTTGAGTAGT+CGG - Chr3:85754861-85754880 MsG0380016616.01.T01:intron 30.0%
! CTTCTTTTATAAACATCAGG+AGG - Chr3:85756142-85756161 MsG0380016616.01.T01:intron 30.0%
!! GTGTTTGTTTCTTTTGACAT+AGG - Chr3:85754660-85754679 MsG0380016616.01.T01:intron 30.0%
!! TTTTGTTGTCGTTCTGTTTA+TGG - Chr3:85754272-85754291 MsG0380016616.01.T01:intron 30.0%
!!! AGCCTGAGATGTATTTTTTA+AGG + Chr3:85755401-85755420 None:intergenic 30.0%
!!! AGTATTTGGATTTTAGTTCC+TGG - Chr3:85755454-85755473 MsG0380016616.01.T01:intron 30.0%
!!! AGTTAAAACTTTTAAGGCTC+CGG - Chr3:85755425-85755444 MsG0380016616.01.T01:intron 30.0%
!!! ATAACTGATAGTTTTGGCAA+AGG - Chr3:85755199-85755218 MsG0380016616.01.T01:intron 30.0%
!!! ATAGTTTTGGCAAAGGAATA+TGG - Chr3:85755206-85755225 MsG0380016616.01.T01:intron 30.0%
!!! CAACCATGGTTTTAAATCAA+GGG - Chr3:85754548-85754567 MsG0380016616.01.T01:CDS 30.0%
!!! CCTTATTTTGCCACAATTAT+AGG + Chr3:85754584-85754603 None:intergenic 30.0%
AAAAGAAAAGGATTCACACG+TGG + Chr3:85755037-85755056 None:intergenic 35.0%
AACAAAAACAAGAGAGAACC+TGG + Chr3:85755654-85755673 None:intergenic 35.0%
AACCAATGTATACCCATTCA+AGG + Chr3:85755490-85755509 None:intergenic 35.0%
AACTGTGAACTCTATCATTG+GGG - Chr3:85754738-85754757 MsG0380016616.01.T01:intron 35.0%
ACCTGTAAAGCAAATATGAC+AGG + Chr3:85756090-85756109 None:intergenic 35.0%
ATCCTTGAATGGGTATACAT+TGG - Chr3:85755485-85755504 MsG0380016616.01.T01:intron 35.0%
CAAATCAGAGAGGAAAACTA+TGG - Chr3:85756061-85756080 MsG0380016616.01.T01:intron 35.0%
CAACTGTGAACTCTATCATT+GGG - Chr3:85754737-85754756 MsG0380016616.01.T01:intron 35.0%
CACATAAAGCAGAACATCTA+TGG + Chr3:85755125-85755144 None:intergenic 35.0%
CATAGATGTTCTGCTTTATG+TGG - Chr3:85755123-85755142 MsG0380016616.01.T01:intron 35.0%
CCAAGCAGTATTCAAGATTT+AGG + Chr3:85753114-85753133 None:intergenic 35.0%
CCTAAATCTTGAATACTGCT+TGG - Chr3:85753111-85753130 MsG0380016616.01.T01:CDS 35.0%
CGTTCTGTTTATGGAATTAG+TGG - Chr3:85754281-85754300 MsG0380016616.01.T01:intron 35.0%
CTAATGAAAAAAAGCCCTCT+TGG - Chr3:85756248-85756267 MsG0380016616.01.T01:intron 35.0%
GAACTCAACTTATGATGCAT+CGG + Chr3:85753289-85753308 None:intergenic 35.0%
GAAGGAAGCTACAAAGAAAA+AGG + Chr3:85755093-85755112 None:intergenic 35.0%
TCAACTGTGAACTCTATCAT+TGG - Chr3:85754736-85754755 MsG0380016616.01.T01:intron 35.0%
TCCTGTCATATTTGCTTTAC+AGG - Chr3:85756086-85756105 MsG0380016616.01.T01:intron 35.0%
TGCACATATTCTTTCATGGA+AGG - Chr3:85753855-85753874 MsG0380016616.01.T01:intron 35.0%
TGGCGCTTGATATCATAAAA+CGG - Chr3:85754983-85755002 MsG0380016616.01.T01:intron 35.0%
TTAAAAGTAGGGTTATGTCC+AGG - Chr3:85755633-85755652 MsG0380016616.01.T01:intron 35.0%
TTGAACATTATCGATACTCC+TGG - Chr3:85754931-85754950 MsG0380016616.01.T01:CDS 35.0%
TTGAATGGGTATACATTGGT+TGG - Chr3:85755489-85755508 MsG0380016616.01.T01:intron 35.0%
TTGTCTTGATCGAAAACAGT+GGG - Chr3:85755792-85755811 MsG0380016616.01.T01:intron 35.0%
TTTATCTCAAACACTTCCTC+AGG - Chr3:85754169-85754188 MsG0380016616.01.T01:intron 35.0%
TTTCTGTGATTGTTTGGACT+AGG + Chr3:85755980-85755999 None:intergenic 35.0%
TTTGGGAAAACTTAAGCAAG+AGG - Chr3:85754390-85754409 MsG0380016616.01.T01:intron 35.0%
! AAACGGTATGCTTTTATGTC+TGG - Chr3:85755000-85755019 MsG0380016616.01.T01:intron 35.0%
! AACCAAGTTGCTTGAACTTT+TGG - Chr3:85754372-85754391 MsG0380016616.01.T01:CDS 35.0%
! ACCAAGTTGCTTGAACTTTT+GGG - Chr3:85754373-85754392 MsG0380016616.01.T01:CDS 35.0%
! AGGTAAGCTTTTGAACTTTG+AGG - Chr3:85756106-85756125 MsG0380016616.01.T01:intron 35.0%
! AGTAATTTTCATCAGGGGTT+AGG - Chr3:85755532-85755551 MsG0380016616.01.T01:intron 35.0%
! ATTTTGCGTAATACCAACCA+TGG - Chr3:85754534-85754553 MsG0380016616.01.T01:CDS 35.0%
! CATAGTTTTCCTCTCTGATT+TGG + Chr3:85756063-85756082 None:intergenic 35.0%
! CCTTGATTTAAAACCATGGT+TGG + Chr3:85754550-85754569 None:intergenic 35.0%
! GGTTCTGTCTCATTAGATTT+TGG + Chr3:85753498-85753517 None:intergenic 35.0%
! GTTGACTCTTGAAATTGTCA+TGG - Chr3:85752982-85753001 MsG0380016616.01.T01:CDS 35.0%
! TTTTCTTTGTAGCTTCCTTC+TGG - Chr3:85755093-85755112 MsG0380016616.01.T01:intron 35.0%
! TTTTGCTTTCTCTTAACCCT+AGG - Chr3:85755754-85755773 MsG0380016616.01.T01:intron 35.0%
!! ACAGGAAAGTATTACCTGAA+AGG + Chr3:85754785-85754804 None:intergenic 35.0%
!! ATACTCCTGGTCTTATTGAA+GGG - Chr3:85754944-85754963 MsG0380016616.01.T01:CDS 35.0%
!! CAGGAAAGTATTACCTGAAA+GGG + Chr3:85754784-85754803 None:intergenic 35.0%
!! GGACATAACCCTACTTTTAA+AGG + Chr3:85755633-85755652 None:intergenic 35.0%
!! TTTCCTCTCTGATTTGGATT+TGG + Chr3:85756057-85756076 None:intergenic 35.0%
!!! CCAACCATGGTTTTAAATCA+AGG - Chr3:85754547-85754566 MsG0380016616.01.T01:CDS 35.0%
AAGGAAAAGTGGAATACCTG+AGG + Chr3:85754188-85754207 None:intergenic 40.0%
ATTCAAGGATCAAGAGATCC+AGG + Chr3:85755475-85755494 None:intergenic 40.0%
CAGGTAATACTTTCCTGTGA+TGG - Chr3:85754787-85754806 MsG0380016616.01.T01:intron 40.0%
CTACTCGATACACATCTAAG+CGG + Chr3:85755150-85755169 None:intergenic 40.0%
GAAAAACAAGAACTGCAGAG+AGG + Chr3:85756194-85756213 None:intergenic 40.0%
GAAAATATGTGCATGGTGAC+AGG - Chr3:85755923-85755942 MsG0380016616.01.T01:intron 40.0%
GACCGTGACTTCAATTATAG+TGG - Chr3:85754490-85754509 MsG0380016616.01.T01:CDS 40.0%
GAGGAATAAGGAAAGGTGAA+TGG + Chr3:85755867-85755886 None:intergenic 40.0%
GCATCAAATCGTCCTTCATA+CGG + Chr3:85753801-85753820 None:intergenic 40.0%
GGATCTCTTGATCCTTGAAT+GGG - Chr3:85755475-85755494 MsG0380016616.01.T01:intron 40.0%
GGCTAATGCTCTTGAAATTG+TGG - Chr3:85754602-85754621 MsG0380016616.01.T01:intron 40.0%
GGGCTGATAAAAGAGGAATA+AGG + Chr3:85755879-85755898 None:intergenic 40.0%
GTTGTCTTGATCGAAAACAG+TGG - Chr3:85755791-85755810 MsG0380016616.01.T01:intron 40.0%
TCATCATAAGGCAATCCATC+CGG + Chr3:85755274-85755293 None:intergenic 40.0%
TCCCAAAAGTTCAAGCAACT+TGG + Chr3:85754377-85754396 None:intergenic 40.0%
TCCTTGACCATACTTGTGAT+GGG - Chr3:85754691-85754710 MsG0380016616.01.T01:intron 40.0%
TCGCGGTTAACCTATAATTG+TGG - Chr3:85754571-85754590 MsG0380016616.01.T01:CDS 40.0%
TGGATCTCTTGATCCTTGAA+TGG - Chr3:85755474-85755493 MsG0380016616.01.T01:intron 40.0%
TGGCAAAGGAATATGGAACA+AGG - Chr3:85755213-85755232 MsG0380016616.01.T01:intron 40.0%
TTCATCTTGAGTAGTCGGAA+GGG - Chr3:85754866-85754885 MsG0380016616.01.T01:intron 40.0%
TTCGATCAAGACAACAGGAA+TGG + Chr3:85755786-85755805 None:intergenic 40.0%
TTCTTCCAAATGGGATTGCT+TGG - Chr3:85755946-85755965 MsG0380016616.01.T01:intron 40.0%
TTGATACATGTCTCACAAGC+TGG - Chr3:85753205-85753224 MsG0380016616.01.T01:intron 40.0%
TTGGACTAAGGATTAACCGT+GGG + Chr3:85753357-85753376 None:intergenic 40.0%
TTTCATCTTGAGTAGTCGGA+AGG - Chr3:85754865-85754884 MsG0380016616.01.T01:intron 40.0%
TTTGGACTAAGGATTAACCG+TGG + Chr3:85753358-85753377 None:intergenic 40.0%
! CATTGTGATAGTTGGTACCA+AGG + Chr3:85754641-85754660 None:intergenic 40.0%
! CGACCCTTGATTTAAAACCA+TGG + Chr3:85754554-85754573 None:intergenic 40.0%
! CTGTTTTCGATCAAGACAAC+AGG + Chr3:85755791-85755810 None:intergenic 40.0%
! TCTTGAGCCATCTTCCTTTT+TGG + Chr3:85752942-85752961 None:intergenic 40.0%
!! CAACTTATCTGGTTTGCTGT+AGG + Chr3:85754106-85754125 None:intergenic 40.0%
!! CTCTCGCTGTTTTCTACTTT+TGG - Chr3:85753933-85753952 MsG0380016616.01.T01:CDS 40.0%
!! GATAAACGGGCTGATAAAAG+AGG + Chr3:85755886-85755905 None:intergenic 40.0%
!! GATACTCCTGGTCTTATTGA+AGG - Chr3:85754943-85754962 MsG0380016616.01.T01:CDS 40.0%
!! TACTCCTGGTCTTATTGAAG+GGG - Chr3:85754945-85754964 MsG0380016616.01.T01:CDS 40.0%
!!! TGGTTTTAAATCAAGGGTCG+CGG - Chr3:85754554-85754573 MsG0380016616.01.T01:CDS 40.0%
ACCTTTCCCCATCACAAGTA+TGG + Chr3:85754701-85754720 None:intergenic 45.0%
AGGGGGTTACATCAGTGATA+TGG - Chr3:85754963-85754982 MsG0380016616.01.T01:CDS 45.0%
ATCAGGTGCCTCCTTAAAGA+AGG - Chr3:85755336-85755355 MsG0380016616.01.T01:intron 45.0%
CCTTGACCATACTTGTGATG+GGG - Chr3:85754692-85754711 MsG0380016616.01.T01:intron 45.0%
CTCAACAACAAGTTCGTGAG+TGG - Chr3:85754317-85754336 MsG0380016616.01.T01:CDS 45.0%
CTCCTTGACCATACTTGTGA+TGG - Chr3:85754690-85754709 MsG0380016616.01.T01:intron 45.0%
CTCTATCATTGGGGAAAGAG+TGG - Chr3:85754747-85754766 MsG0380016616.01.T01:intron 45.0%
CTGAGCAGCATCCTTCTTTA+AGG + Chr3:85755350-85755369 None:intergenic 45.0%
CTTAAAGAAGGATGCTGCTC+AGG - Chr3:85755348-85755367 MsG0380016616.01.T01:intron 45.0%
GACATAGTTAACGTGTCCCA+CGG - Chr3:85753338-85753357 MsG0380016616.01.T01:intron 45.0%
GGAATCCAAGCAATCCCATT+TGG + Chr3:85755954-85755973 None:intergenic 45.0%
GGACCAAATCCAAATCAGAG+AGG - Chr3:85756051-85756070 MsG0380016616.01.T01:intron 45.0%
GGTGACAGGTTCTTCCAAAT+GGG - Chr3:85755937-85755956 MsG0380016616.01.T01:intron 45.0%
GTGGGACACGTTAACTATGT+CGG + Chr3:85753339-85753358 None:intergenic 45.0%
GTTCAGAAAGAGACTCGTGA+AGG - Chr3:85756289-85756308 MsG0380016616.01.T01:CDS 45.0%
TAACCCCCTTCAATAAGACC+AGG + Chr3:85754952-85754971 None:intergenic 45.0%
TATCATTGGGGAAAGAGTGG+TGG - Chr3:85754750-85754769 MsG0380016616.01.T01:intron 45.0%
TCTTGATCGAAAACAGTGGG+AGG - Chr3:85755795-85755814 MsG0380016616.01.T01:intron 45.0%
TGGGACACGTTAACTATGTC+GGG + Chr3:85753338-85753357 None:intergenic 45.0%
TGGTGACAGGTTCTTCCAAA+TGG - Chr3:85755936-85755955 MsG0380016616.01.T01:intron 45.0%
TGTGTATCGAGTAGACAGCT+TGG - Chr3:85755156-85755175 MsG0380016616.01.T01:intron 45.0%
! ACCATACTTGTGATGGGGAA+AGG - Chr3:85754697-85754716 MsG0380016616.01.T01:intron 45.0%
! ACTTTCCTGTGATGGTTTGC+AGG - Chr3:85754795-85754814 MsG0380016616.01.T01:intron 45.0%
! AGCAGCATCCTTCTTTAAGG+AGG + Chr3:85755347-85755366 None:intergenic 45.0%
! ATACTTGTGATGGGGAAAGG+TGG - Chr3:85754700-85754719 MsG0380016616.01.T01:intron 45.0%
! CTTTCCTGTGATGGTTTGCA+GGG - Chr3:85754796-85754815 MsG0380016616.01.T01:intron 45.0%
! GTATACATTGGTTGGCCACT+TGG - Chr3:85755497-85755516 MsG0380016616.01.T01:intron 45.0%
! GTGATTGTTTGGACTAGGAG+AGG + Chr3:85755975-85755994 None:intergenic 45.0%
! GTGGCTGCAATTTAAAGCCT+TGG - Chr3:85754621-85754640 MsG0380016616.01.T01:intron 45.0%
! TTTATGAGGTTGGGGTGCTA+TGG - Chr3:85753415-85753434 MsG0380016616.01.T01:intron 45.0%
!! ACTCCTGGTCTTATTGAAGG+GGG - Chr3:85754946-85754965 MsG0380016616.01.T01:CDS 45.0%
!! CATCTATGGTCTTGTCCAGA+AGG + Chr3:85755111-85755130 None:intergenic 45.0%
!! TTTTCGCATGATGATGCGAC+TGG + Chr3:85753231-85753250 None:intergenic 45.0%
!!! CGGAGAGAGTACTTTTTCGA+GGG + Chr3:85753519-85753538 None:intergenic 45.0%
!!! TCGGAGAGAGTACTTTTTCG+AGG + Chr3:85753520-85753539 None:intergenic 45.0%
AACAGGAATGGCAGAAGCCT+AGG + Chr3:85755774-85755793 None:intergenic 50.0%
ACAGGAATGGCAGAAGCCTA+GGG + Chr3:85755773-85755792 None:intergenic 50.0%
CAACAAGTTCGTGAGTGGTC+TGG - Chr3:85754322-85754341 MsG0380016616.01.T01:CDS 50.0%
CAGAAAGAGACTCGTGAAGG+TGG - Chr3:85756292-85756311 MsG0380016616.01.T01:CDS 50.0%
CCCCATCACAAGTATGGTCA+AGG + Chr3:85754695-85754714 None:intergenic 50.0%
GATACGCGTAAAGAGAAGCG+TGG - Chr3:85756322-85756341 MsG0380016616.01.T01:CDS 50.0%
GGGACACGTTAACTATGTCG+GGG + Chr3:85753337-85753356 None:intergenic 50.0%
TATGATGCATCGGATGTGCG+AGG + Chr3:85753279-85753298 None:intergenic 50.0%
TCATAAGGCAATCCATCCGG+TGG + Chr3:85755271-85755290 None:intergenic 50.0%
! GGCTCCGGATTCGAAGTATT+TGG - Chr3:85755440-85755459 MsG0380016616.01.T01:intron 50.0%
!! AGCAACTTGGTTTGCGTAGC+AGG + Chr3:85754364-85754383 None:intergenic 50.0%
!! TGTTATGGTGTCGCGAGCAA+GGG - Chr3:85754897-85754916 MsG0380016616.01.T01:CDS 50.0%
ACATCACGCGTCTCCCAAGA+GGG + Chr3:85756265-85756284 None:intergenic 55.0%
ACATGCCCAGTTCTCTCCAC+CGG - Chr3:85755252-85755271 MsG0380016616.01.T01:intron 55.0%
ACCACCCTGCAAACCATCAC+AGG + Chr3:85754803-85754822 None:intergenic 55.0%
ATCCATCCGGTGGAGAGAAC+TGG + Chr3:85755261-85755280 None:intergenic 55.0%
CGCGACACCATAACAGGTCT+TGG + Chr3:85754892-85754911 None:intergenic 55.0%
CTTGCTCGCGACACCATAAC+AGG + Chr3:85754898-85754917 None:intergenic 55.0%
GGAAGGGCCAAGACCTGTTA+TGG - Chr3:85754882-85754901 MsG0380016616.01.T01:CDS 55.0%
TACATCACGCGTCTCCCAAG+AGG + Chr3:85756266-85756285 None:intergenic 55.0%
TCCATCCGGTGGAGAGAACT+GGG + Chr3:85755260-85755279 None:intergenic 55.0%
TCTTGGGAGACGCGTGATGT+AGG - Chr3:85756265-85756284 MsG0380016616.01.T01:intron 55.0%
! AGAAGCGTGGTGCAGGTGTT+CGG - Chr3:85756335-85756354 MsG0380016616.01.T01:CDS 55.0%
! CGTAAAGAGAAGCGTGGTGC+AGG - Chr3:85756328-85756347 MsG0380016616.01.T01:CDS 55.0%
! GGTGGCGATTAGTCCCTTTC+AGG - Chr3:85754768-85754787 MsG0380016616.01.T01:intron 55.0%
! GTGATGGGGAAAGGTGGTGT+CGG - Chr3:85754706-85754725 MsG0380016616.01.T01:intron 55.0%
! TCCTGTGATGGTTTGCAGGG+TGG - Chr3:85754799-85754818 MsG0380016616.01.T01:intron 55.0%
! TGTGATGGTTTGCAGGGTGG+TGG - Chr3:85754802-85754821 MsG0380016616.01.T01:intron 55.0%
!! CTGTTATGGTGTCGCGAGCA+AGG - Chr3:85754896-85754915 MsG0380016616.01.T01:CDS 55.0%
GCCCAGTTCTCTCCACCGGA+TGG - Chr3:85755256-85755275 MsG0380016616.01.T01:intron 65.0%
!! ATGGTGTCGCGAGCAAGGGC+TGG - Chr3:85754901-85754920 MsG0380016616.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 85752929 85756363 85752929 ID=MsG0380016616.01;Name=MsG0380016616.01
Chr3 mRNA 85752929 85756363 85752929 ID=MsG0380016616.01.T01;Parent=MsG0380016616.01;Name=MsG0380016616.01.T01;_AED=0.50;_eAED=0.55;_QI=0|0.57|0.37|1|1|1|8|0|345
Chr3 exon 85756289 85756363 85756289 ID=MsG0380016616.01.T01:exon:25165;Parent=MsG0380016616.01.T01
Chr3 exon 85754881 85754991 85754881 ID=MsG0380016616.01.T01:exon:25164;Parent=MsG0380016616.01.T01
Chr3 exon 85754484 85754610 85754484 ID=MsG0380016616.01.T01:exon:25163;Parent=MsG0380016616.01.T01
Chr3 exon 85754288 85754405 85754288 ID=MsG0380016616.01.T01:exon:25162;Parent=MsG0380016616.01.T01
Chr3 exon 85753923 85754187 85753923 ID=MsG0380016616.01.T01:exon:25161;Parent=MsG0380016616.01.T01
Chr3 exon 85753448 85753516 85753448 ID=MsG0380016616.01.T01:exon:25160;Parent=MsG0380016616.01.T01
Chr3 exon 85753278 85753347 85753278 ID=MsG0380016616.01.T01:exon:25159;Parent=MsG0380016616.01.T01
Chr3 exon 85752929 85753131 85752929 ID=MsG0380016616.01.T01:exon:25158;Parent=MsG0380016616.01.T01
Chr3 CDS 85756289 85756363 85756289 ID=MsG0380016616.01.T01:cds;Parent=MsG0380016616.01.T01
Chr3 CDS 85754881 85754991 85754881 ID=MsG0380016616.01.T01:cds;Parent=MsG0380016616.01.T01
Chr3 CDS 85754484 85754610 85754484 ID=MsG0380016616.01.T01:cds;Parent=MsG0380016616.01.T01
Chr3 CDS 85754288 85754405 85754288 ID=MsG0380016616.01.T01:cds;Parent=MsG0380016616.01.T01
Chr3 CDS 85753923 85754187 85753923 ID=MsG0380016616.01.T01:cds;Parent=MsG0380016616.01.T01
Chr3 CDS 85753448 85753516 85753448 ID=MsG0380016616.01.T01:cds;Parent=MsG0380016616.01.T01
Chr3 CDS 85753278 85753347 85753278 ID=MsG0380016616.01.T01:cds;Parent=MsG0380016616.01.T01
Chr3 CDS 85752929 85753131 85752929 ID=MsG0380016616.01.T01:cds;Parent=MsG0380016616.01.T01
Gene Sequence

>MsG0380016616.01.T01

ATGAATCTTACCAAAAAGGAAGATGGCTCAAGAGATATGAGTAAGATGATTGAGTTGACTCTTGAAATTGTCATGTGGAACATTATGGCATCTCAACAACAAGTTCGTGAGTGGTCTGGAATCAATACGTTTGCTCCTGCTACGCAAACCAAGTTGCTTGAACTTTTGGGAAAACTTAAGCAAGAGGATGTGAACTCCTTGACCATACTTGTGATGGGGAAAGGTGGTGTCGGAAAGTCTTCAACTGTGAACTCTATCATTGGGGAAAGAGTGGTGGCGATTAGTCCCTTTCAGGTAATACTTTCCTGTGATGGGCCAAGACCTGTTATGGTGTCGCGAGCAAGGGCTGGTTTTACATTGAACATTATCGATACTCCTGGTCTTATTGAAGGGGGTTACATCAGTGATATGGCGCTTGATATCATAAAACGCTTCCTTCTGGACAAGACCATAGATGTTCTGCTTTATGTGGACCGCTTAGATGTGTATCGAGTAGACAGCTTGGATAAGCTAGTCGCCAAAGCTATAACTGATAGTTTTGGCAAAGGAATATGGAACAAGGCTATAGTAGCACTCACACATGCCCAGTTCTCTCCACCGGATGGATTGCCTTATGATGAGTTCTTCTCAAAAAGATCCGAAGCTCTGTTACAAATTATAAAATCAGGTGCCTCCTTAAAGAAGGATGCTGCTCAGGCTTCTGCCATTCCTGTTGTCTTGATCGAAAACAGTGGGAGGTGCAACAAAAATGAAACTGATGAAAAGGTTCTTCCAAATGGGATTGCTTGGATTCCTCTCCTAGTCCAAACAATCACAGAAATTGCATTGAACAAAAGAGGTTCTTCCTCTTGTTTATCTTATTCTTCCTCTCTGCAGTTCTTGTTTTTCATGAAGATAAAAGCACTGATCATGAACGACATTGCTAATGAAAAAAAGCCCTCTTGGGAGACGCGTGATGTAGGTGTTCAGAAAGAGACTCGTGAAGGTGGTCAGAAAGATACGCGTAAAGAGAAGCGTGGTGCAGGTGTTCGGAAATGA
Protein sequence

>MsG0380016616.01.T01

MNLTKKEDGSRDMSKMIELTLEIVMWNIMASQQQVREWSGINTFAPATQTKLLELLGKLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVAISPFQVILSCDGPRPVMVSRARAGFTLNIIDTPGLIEGGYISDMALDIIKRFLLDKTIDVLLYVDRLDVYRVDSLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQIIKSGASLKKDAAQASAIPVVLIENSGRCNKNETDEKVLPNGIAWIPLLVQTITEIALNKRGSSSCLSYSSSLQFLFFMKIKALIMNDIANEKKPSWETRDVGVQKETREGGQKDTRKEKRGAGVRK*