AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000355.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000355.01.T01 MTR_1g017390 88.372 172 12 1 208 371 377 548 4.41e-93 294
MsG0180000355.01.T01 MTR_1g017390 96.241 133 5 0 90 222 176 308 1.54e-80 261
MsG0180000355.01.T01 MTR_1g017390 89.583 48 3 1 435 482 543 588 4.04e-20 94.0
MsG0180000355.01.T01 MTR_1g017390 97.059 34 1 0 4 37 152 185 7.04e-11 65.1
MsG0180000355.01.T01 MTR_1g017380 88.372 172 12 1 208 371 377 548 5.34e-93 294
MsG0180000355.01.T01 MTR_1g017380 96.241 133 5 0 90 222 176 308 1.82e-80 261
MsG0180000355.01.T01 MTR_1g017380 89.583 48 3 1 435 482 543 588 3.89e-20 94.0
MsG0180000355.01.T01 MTR_1g017380 97.059 34 1 0 4 37 152 185 7.04e-11 65.1
MsG0180000355.01.T01 MTR_4g057970 49.261 203 89 4 172 370 354 546 1.62e-44 165
MsG0180000355.01.T01 MTR_4g057970 55.556 117 52 0 106 222 192 308 1.10e-31 128
MsG0180000355.01.T01 MTR_4g084130 54.000 150 68 1 221 370 278 426 1.81e-41 154
MsG0180000355.01.T01 MTR_4g084130 50.427 117 58 0 106 222 72 188 1.25e-33 132
MsG0180000355.01.T01 MTR_1g090140 44.492 236 113 6 137 371 314 532 4.06e-41 155
MsG0180000355.01.T01 MTR_1g090140 46.281 121 65 0 102 222 174 294 5.57e-31 126
MsG0180000355.01.T01 MTR_4g084130 54.000 150 68 1 221 370 390 538 5.91e-41 155
MsG0180000355.01.T01 MTR_4g084130 50.427 117 58 0 106 222 184 300 4.48e-33 132
MsG0180000355.01.T01 MTR_1g090130 44.068 236 114 6 137 371 314 532 5.94e-41 155
MsG0180000355.01.T01 MTR_1g090130 46.281 121 65 0 102 222 174 294 1.09e-29 122
MsG0180000355.01.T01 MTR_8g017080 44.253 174 94 2 228 401 392 562 7.70e-35 137
MsG0180000355.01.T01 MTR_8g017080 44.628 121 67 0 102 222 175 295 1.86e-28 119
MsG0180000355.01.T01 MTR_0991s0010 97.297 37 1 0 4 40 152 188 4.30e-14 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000355.01.T01 AT1G55490 47.465 434 166 12 90 482 185 597 1.95e-96 303
MsG0180000355.01.T01 AT1G55490 47.465 434 166 12 90 482 185 597 1.95e-96 303
MsG0180000355.01.T01 AT1G55490 47.465 434 166 12 90 482 185 597 1.95e-96 303
MsG0180000355.01.T01 AT1G55490 47.465 434 166 12 90 482 185 597 1.95e-96 303
MsG0180000355.01.T01 AT1G55490 47.465 434 166 12 90 482 185 597 1.95e-96 303
MsG0180000355.01.T01 AT5G56500 46.136 427 183 11 90 482 181 594 1.23e-88 283
MsG0180000355.01.T01 AT5G56500 46.136 427 183 11 90 482 181 594 1.23e-88 283
MsG0180000355.01.T01 AT3G13470 83.721 172 20 1 208 371 382 553 7.96e-87 278
MsG0180000355.01.T01 AT3G13470 86.466 133 18 0 90 222 181 313 4.03e-73 242
MsG0180000355.01.T01 AT3G13470 85.106 47 5 1 436 482 549 593 6.17e-18 87.0
MsG0180000355.01.T01 AT1G26230 63.584 173 60 2 200 371 311 481 3.67e-65 220
MsG0180000355.01.T01 AT1G26230 60.902 133 52 0 90 222 109 241 4.58e-48 174
MsG0180000355.01.T01 AT1G26230 63.584 173 60 2 200 371 319 489 3.79e-65 220
MsG0180000355.01.T01 AT1G26230 60.902 133 52 0 90 222 117 249 4.69e-48 174
MsG0180000355.01.T01 AT1G26230 63.584 173 60 2 200 371 371 541 9.27e-65 220
MsG0180000355.01.T01 AT1G26230 60.902 133 52 0 90 222 169 301 8.08e-48 174
MsG0180000355.01.T01 AT1G26230 60.902 133 52 0 90 222 169 301 7.97e-49 174
MsG0180000355.01.T01 AT1G26230 51.351 74 33 2 200 272 371 442 7.08e-14 73.9
MsG0180000355.01.T01 AT1G26230 60.902 133 52 0 90 222 169 301 3.02e-48 174
MsG0180000355.01.T01 AT1G26230 59.722 144 55 2 200 342 371 512 1.80e-46 169
MsG0180000355.01.T01 AT2G28000 60.839 143 55 1 228 370 404 545 5.11e-45 166
MsG0180000355.01.T01 AT2G28000 52.991 117 55 0 106 222 191 307 6.00e-31 126
MsG0180000355.01.T01 AT2G33210 49.246 199 86 5 174 371 348 532 2.44e-43 161
MsG0180000355.01.T01 AT2G33210 46.281 121 65 0 102 222 174 294 8.81e-30 123
MsG0180000355.01.T01 AT2G33210 49.246 199 86 5 174 371 343 527 2.71e-43 161
MsG0180000355.01.T01 AT2G33210 46.281 121 65 0 102 222 174 294 9.76e-30 122
MsG0180000355.01.T01 AT3G23990 46.890 209 102 4 164 371 331 531 1.31e-41 157
MsG0180000355.01.T01 AT3G23990 43.802 121 68 0 102 222 173 293 2.01e-28 119
MsG0180000355.01.T01 AT5G18820 54.839 155 67 3 221 374 278 430 2.79e-40 151
MsG0180000355.01.T01 AT5G18820 48.718 117 60 0 106 222 72 188 4.05e-26 111
MsG0180000355.01.T01 AT5G18820 54.839 155 67 3 221 374 384 536 1.41e-39 151
MsG0180000355.01.T01 AT5G18820 48.718 117 60 0 106 222 178 294 8.75e-26 111
MsG0180000355.01.T01 AT3G13860 41.827 208 114 3 164 371 331 531 2.28e-36 142
MsG0180000355.01.T01 AT3G13860 47.107 121 64 0 102 222 173 293 7.93e-30 123
MsG0180000355.01.T01 AT5G18820 46.721 122 65 0 101 222 173 294 3.86e-26 110

Find 87 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCTGCAATTATCAAAAT+AGG 0.166829 1:+4832952 None:intergenic
ACGATTCTTAAAAGGCTTCT+TGG 0.249262 1:-4830926 MsG0180000355.01.T01:intron
AATCTATAAATCACCTTTGT+TGG 0.276775 1:+4831310 None:intergenic
GTTGTGGTTGTGTGAATTGC+AGG 0.346346 1:-4833385 MsG0180000355.01.T01:CDS
ATTTGCAAGGGTAGCCTTGA+TGG 0.359794 1:+4831788 None:intergenic
TGGCGGTGTGGCTGTAATTC+AGG 0.378807 1:-4832143 MsG0180000355.01.T01:intron
CCTCTGCAATTATCAAAATA+GGG 0.385162 1:+4832953 None:intergenic
CTGTGTTGTTGTTGAGATAA+AGG 0.387501 1:-4830724 MsG0180000355.01.T01:CDS
TACGGATATAATGCTGCAAC+TGG 0.399922 1:-4831370 MsG0180000355.01.T01:CDS
GGTAACCCAATGGACAATTC+AGG 0.411976 1:-4830681 MsG0180000355.01.T01:CDS
GGATATTGAACAAGAAGCTT+TGG 0.413311 1:-4832932 MsG0180000355.01.T01:CDS
GTTGAGGAGGGTATTGTAGT+TGG 0.422734 1:-4831852 MsG0180000355.01.T01:CDS
CAACATGTCTGCCTCATGTT+AGG 0.428266 1:-4833461 MsG0180000355.01.T01:CDS
TTGTCCATTGGGTTACCAAC+AGG 0.439504 1:+4830687 None:intergenic
TATGAAGATTTAATGTCGGC+TGG 0.440375 1:-4831343 MsG0180000355.01.T01:CDS
GAGGGTATTGTAGTTGGCGG+TGG 0.446592 1:-4831846 MsG0180000355.01.T01:CDS
GTTGAGTAAGGTTGGTAGAA+AGG 0.446649 1:-4833283 MsG0180000355.01.T01:CDS
CTCACTGTCTGTAACAAAGT+AGG 0.452915 1:+4833173 None:intergenic
GAAAGGATTGCAAAACTGTC+TGG 0.467114 1:-4832163 MsG0180000355.01.T01:CDS
TACATACCTGAATTGTCCAT+TGG 0.470599 1:+4830675 None:intergenic
TAAGTAACTAATAATGTGCT+TGG 0.472389 1:-4834668 None:intergenic
GAAAGATTAAGTCACCTTTG+TGG 0.473592 1:+4831944 None:intergenic
GATAGCTGAGGCGTTGAGTA+AGG 0.484566 1:-4833295 MsG0180000355.01.T01:CDS
CCAGGTGGTCAGATGTTGCT+TGG 0.488161 1:-4830787 MsG0180000355.01.T01:CDS
GCAGGTTGAGGATAGTGAAT+TGG 0.491700 1:-4833367 MsG0180000355.01.T01:CDS
CTTTCAGGCCGCTGTTGAGG+AGG 0.494985 1:-4831865 MsG0180000355.01.T01:intron
GTTAATAAGATCCCTTGCAT+TGG 0.496312 1:+4833005 None:intergenic
GAAGCATCCTACTGTTGTCC+AGG 0.499973 1:-4830805 MsG0180000355.01.T01:CDS
TTACTTTCAGGCCGCTGTTG+AGG 0.503371 1:-4831868 MsG0180000355.01.T01:intron
ACATACCTGAATTGTCCATT+GGG 0.507022 1:+4830676 None:intergenic
TTTGCTCAGACTTGCATCAA+AGG 0.510939 1:-4831817 MsG0180000355.01.T01:CDS
TGCAGAACAAGATTATGAAA+AGG 0.511288 1:-4832197 MsG0180000355.01.T01:CDS
AGGGTATTGTAGTTGGCGGT+GGG 0.514410 1:-4831845 MsG0180000355.01.T01:CDS
ATCAAAGGTGGATGCCATCA+AGG 0.515568 1:-4831802 MsG0180000355.01.T01:CDS
TTACCAACAGGTGCAGCCTC+AGG 0.516329 1:+4830699 None:intergenic
TTGAGTAAGGTTGGTAGAAA+GGG 0.519613 1:-4833282 MsG0180000355.01.T01:CDS
TCCGTATCTCGTATTGTCGT+TGG 0.522553 1:+4831387 None:intergenic
TCACTGTCTGTAACAAAGTA+GGG 0.525001 1:+4833174 None:intergenic
AGTGTAGTGTCACACATAGA+AGG 0.533962 1:+4830877 None:intergenic
ATACCACGTGTGATAAGCAC+AGG 0.537355 1:+4834562 None:intergenic
GATGTGGCAGCAGTTAGTGC+AGG 0.549028 1:-4833342 MsG0180000355.01.T01:CDS
CCAAGCAACATCTGACCACC+TGG 0.551933 1:+4830787 None:intergenic
CTAGAGGACGCAATTAGAAA+CGG 0.558599 1:-4832979 MsG0180000355.01.T01:CDS
GAGGAGGGTATTGTAGTTGG+CGG 0.560061 1:-4831849 MsG0180000355.01.T01:CDS
AAAAGGAGAAGCTGAACGAA+AGG 0.560321 1:-4832180 MsG0180000355.01.T01:CDS
ATTTAAACTTAGAAGAGTTG+TGG 0.560805 1:-4833401 MsG0180000355.01.T01:CDS
TCCAACGACAATACGAGATA+CGG 0.561582 1:-4831388 MsG0180000355.01.T01:CDS
TTTCAGGCCGCTGTTGAGGA+GGG 0.565478 1:-4831864 MsG0180000355.01.T01:intron
ATGAAGATTTAATGTCGGCT+GGG 0.566175 1:-4831342 MsG0180000355.01.T01:CDS
AAACAATCTGTATGTTGTTG+AGG 0.570389 1:-4833226 MsG0180000355.01.T01:CDS
CATAGAAGGCAGAAACATGC+AGG 0.570440 1:+4830891 None:intergenic
AACAATCTGTATGTTGTTGA+GGG 0.571719 1:-4833225 MsG0180000355.01.T01:CDS
GAACCTGAGGCTGCACCTGT+TGG 0.571946 1:-4830702 MsG0180000355.01.T01:CDS
AAAATATGAAGATTTAATGT+CGG 0.572459 1:-4831347 MsG0180000355.01.T01:CDS
ACTTAAACTAATGTCAAAAG+AGG 0.575994 1:-4834509 MsG0180000355.01.T01:CDS
TGCAAAACTGTCTGGCGGTG+TGG 0.580627 1:-4832155 MsG0180000355.01.T01:CDS
GCTGAGGCGTTGAGTAAGGT+TGG 0.581310 1:-4833291 MsG0180000355.01.T01:CDS
TGGCAGTGTTGTTAGTGAGA+AGG 0.588442 1:-4831499 MsG0180000355.01.T01:intron
CTGACCACCTGGACAACAGT+AGG 0.599828 1:+4830798 None:intergenic
GCAGGGAACAATCATGAGGT+AGG 0.602361 1:-4833324 MsG0180000355.01.T01:CDS
TCGTGACACTTGAGGAGGGA+AGG 0.606314 1:-4833257 MsG0180000355.01.T01:CDS
GCTCAGACTTGCATCAAAGG+TGG 0.608186 1:-4831814 MsG0180000355.01.T01:CDS
GGAAAAGAAATTGAGAGTTG+AGG 0.612753 1:-4831979 MsG0180000355.01.T01:CDS
CTTGCAGTTCTCAAATTCAA+CGG 0.614107 1:+4833143 None:intergenic
ACAAACTGAGACAGAACTCA+AGG 0.620054 1:-4832000 MsG0180000355.01.T01:CDS
GCATCCTACTGTTGTCCAGG+TGG 0.626697 1:-4830802 MsG0180000355.01.T01:CDS
GGATAGTGAATTGGCTGATG+TGG 0.636323 1:-4833358 MsG0180000355.01.T01:CDS
TACAATACCCTCCTCAACAG+CGG 0.645508 1:+4831857 None:intergenic
GTTGTGTGAATTGCAGGTTG+AGG 0.647643 1:-4833379 MsG0180000355.01.T01:CDS
AACCCTGTGCTTATCACACG+TGG 0.648183 1:-4834565 MsG0180000355.01.T01:CDS
TGCACCTGTTGGTAACCCAA+TGG 0.655339 1:-4830691 MsG0180000355.01.T01:CDS
GGGTGTCGTGACACTTGAGG+AGG 0.655940 1:-4833262 MsG0180000355.01.T01:CDS
GAGGGCATGCAATTTGATCG+AGG 0.658220 1:-4833207 MsG0180000355.01.T01:CDS
ATGTGGCAGCAGTTAGTGCA+GGG 0.658714 1:-4833341 MsG0180000355.01.T01:CDS
AAAGGGTGTCGTGACACTTG+AGG 0.659317 1:-4833265 MsG0180000355.01.T01:CDS
GGTGTCGTGACACTTGAGGA+GGG 0.659758 1:-4833261 MsG0180000355.01.T01:CDS
GGATCTTATTAACATACTAG+AGG 0.670020 1:-4832995 MsG0180000355.01.T01:CDS
TGGGATCATTGATCCAACAA+AGG 0.675402 1:-4831323 MsG0180000355.01.T01:CDS
AGACATGCTACTAAAGATAG+CGG 0.678533 1:+4831241 None:intergenic
AAGCACAAACACCTAACATG+AGG 0.681139 1:+4833450 None:intergenic
AGGATTGCAAAACTGTCTGG+CGG 0.685391 1:-4832160 MsG0180000355.01.T01:CDS
GGTAGGAAATATGATAGCTG+AGG 0.689740 1:-4833307 MsG0180000355.01.T01:CDS
GGACGCTCTTAATGCCACAA+AGG 0.695512 1:-4831958 MsG0180000355.01.T01:intron
CGTTGAATTTGAGAACTGCA+AGG 0.697779 1:-4833142 MsG0180000355.01.T01:intron
TAGTGCAGGGAACAATCATG+AGG 0.700989 1:-4833328 MsG0180000355.01.T01:CDS
TGTTGAGATAAAGGAACCTG+AGG 0.713419 1:-4830715 MsG0180000355.01.T01:CDS
TACCACGTGTGATAAGCACA+GGG 0.740125 1:+4834563 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATAAAAAAGAAAAAAAAAA+AGG + Chr1:4831429-4831448 None:intergenic 10.0%
!! AAAATATGAAGATTTAATGT+CGG - Chr1:4833982-4834001 MsG0180000355.01.T01:intron 15.0%
!! ACTATTAATGTAAAAAACAT+AGG + Chr1:4831846-4831865 None:intergenic 15.0%
!! ATAACTTTATAATTAAAACG+TGG - Chr1:4833731-4833750 MsG0180000355.01.T01:intron 15.0%
!!! AAAAAAAAAAAAACTGACTT+TGG + Chr1:4831343-4831362 None:intergenic 15.0%
!!! AGAGTGAAATTTTATTTTAT+AGG - Chr1:4830724-4830743 MsG0180000355.01.T01:CDS 15.0%
!!! GTTTTTGTAAATAAATAGTT+AGG - Chr1:4831650-4831669 MsG0180000355.01.T01:intron 15.0%
!!! GTTTTTTTAGATTGATTAAT+TGG - Chr1:4831672-4831691 MsG0180000355.01.T01:intron 15.0%
!!! TTCTTTTTTATGAATTGAAA+TGG - Chr1:4831437-4831456 MsG0180000355.01.T01:intron 15.0%
!!! TTTTAAAAAATGCGAATATT+TGG - Chr1:4832931-4832950 MsG0180000355.01.T01:CDS 15.0%
!! AAAAAAAGTCTACATTATAC+AGG - Chr1:4833058-4833077 MsG0180000355.01.T01:intron 20.0%
!! AAAAATATCTCCATATAAAG+GGG + Chr1:4833624-4833643 None:intergenic 20.0%
!! AAAATGTCTACATATTCTAT+AGG - Chr1:4833108-4833127 MsG0180000355.01.T01:intron 20.0%
!! AAATTAATAGCAAAAAATGC+TGG - Chr1:4833801-4833820 MsG0180000355.01.T01:intron 20.0%
!! AAGCAAAGGAAAAAAAAAAT+TGG + Chr1:4831108-4831127 None:intergenic 20.0%
!! AAGTTTAAATGAAAAAGATG+AGG + Chr1:4831918-4831937 None:intergenic 20.0%
!! ACTAGAACATAAAATAAATC+AGG + Chr1:4834344-4834363 None:intergenic 20.0%
!! AGTTTAAATGAAAAAGATGA+GGG + Chr1:4831917-4831936 None:intergenic 20.0%
!! GAAAAATATCTCCATATAAA+GGG + Chr1:4833625-4833644 None:intergenic 20.0%
!! TTCCTTAGAAAAATTGTATT+TGG - Chr1:4834249-4834268 MsG0180000355.01.T01:intron 20.0%
!!! AAAAAATTAGCCTTCAATTA+TGG - Chr1:4831469-4831488 MsG0180000355.01.T01:intron 20.0%
!!! AAAAATTAGCCTTCAATTAT+GGG - Chr1:4831470-4831489 MsG0180000355.01.T01:intron 20.0%
!!! AACTTATGTAACTTGTATAT+TGG - Chr1:4833909-4833928 MsG0180000355.01.T01:intron 20.0%
!!! CATTATAAATGGTTTGTATA+TGG - Chr1:4834141-4834160 MsG0180000355.01.T01:intron 20.0%
!!! CTTGTGTTTTGATTAAATTT+TGG - Chr1:4834168-4834187 MsG0180000355.01.T01:intron 20.0%
!!! TAAAATTTCACTCTAAAATG+AGG + Chr1:4830718-4830737 None:intergenic 20.0%
!!! TAAATTAAACTTAGCTTGTA+GGG - Chr1:4834113-4834132 MsG0180000355.01.T01:intron 20.0%
!!! TTTTTGCTATTAATTTCAGA+GGG + Chr1:4833797-4833816 None:intergenic 20.0%
!!! TTTTTTCTCAATTAGATGTA+GGG - Chr1:4831253-4831272 MsG0180000355.01.T01:CDS 20.0%
!!! TTTTTTGCTATTAATTTCAG+AGG + Chr1:4833798-4833817 None:intergenic 20.0%
!!! TTTTTTTCTCAATTAGATGT+AGG - Chr1:4831252-4831271 MsG0180000355.01.T01:CDS 20.0%
! AAAATATCTCCATATAAAGG+GGG + Chr1:4833623-4833642 None:intergenic 25.0%
! AAGAAATGATAATCAATGAG+GGG - Chr1:4831180-4831199 MsG0180000355.01.T01:intron 25.0%
! AATCTATAAATCACCTTTGT+TGG + Chr1:4834022-4834041 None:intergenic 25.0%
! ACAAATTAAGAACCAAATTG+AGG - Chr1:4832808-4832827 MsG0180000355.01.T01:intron 25.0%
! ACTAAACCAAATTTATGGTT+CGG - Chr1:4831293-4831312 MsG0180000355.01.T01:CDS 25.0%
! ACTTAAACTAATGTCAAAAG+AGG - Chr1:4830820-4830839 MsG0180000355.01.T01:CDS 25.0%
! ATATACAAGTGCATCTAAAT+AGG + Chr1:4831740-4831759 None:intergenic 25.0%
! ATTCTATGACGATTCTTAAA+AGG - Chr1:4834395-4834414 MsG0180000355.01.T01:intron 25.0%
! ATTTAAACTTAGAAGAGTTG+TGG - Chr1:4831928-4831947 MsG0180000355.01.T01:intron 25.0%
! CAGATTTGTAAATTATGAAG+TGG - Chr1:4831510-4831529 MsG0180000355.01.T01:CDS 25.0%
! CATGAACTAAACCAAATTTA+TGG - Chr1:4831288-4831307 MsG0180000355.01.T01:CDS 25.0%
! CGAAAAATATCTCCATATAA+AGG + Chr1:4833626-4833645 None:intergenic 25.0%
! CTTAGAAAAATTGTATTTGG+AGG - Chr1:4834252-4834271 MsG0180000355.01.T01:intron 25.0%
! GAAGAAATGATAATCAATGA+GGG - Chr1:4831179-4831198 MsG0180000355.01.T01:intron 25.0%
! GTATAAAAATCGGCTAAATT+TGG - Chr1:4833852-4833871 MsG0180000355.01.T01:intron 25.0%
! TAAACCAAAAAAGGAACAAA+GGG + Chr1:4832601-4832620 None:intergenic 25.0%
! TAATTTCAACCCATAATTGA+AGG + Chr1:4831482-4831501 None:intergenic 25.0%
! TATAAAGTTATAATCAGCGT+CGG + Chr1:4833722-4833741 None:intergenic 25.0%
! TATACAAGTGCATCTAAATA+GGG + Chr1:4831739-4831758 None:intergenic 25.0%
! TGAAGAAATGATAATCAATG+AGG - Chr1:4831178-4831197 MsG0180000355.01.T01:intron 25.0%
! TGGCAAAGATAATAATAAGT+TGG + Chr1:4832235-4832254 None:intergenic 25.0%
! TTACTTATTCTTCATGTACA+AGG + Chr1:4832905-4832924 None:intergenic 25.0%
!! ATGGAGATATTTTTCGTTTT+AGG - Chr1:4833630-4833649 MsG0180000355.01.T01:intron 25.0%
!! CATTTTTATACACGTGTTAT+GGG - Chr1:4830880-4830899 MsG0180000355.01.T01:CDS 25.0%
!! CTCCAAATACAATTTTTCTA+AGG + Chr1:4834254-4834273 None:intergenic 25.0%
!! GTTTATTGTTTCTCAAAACT+GGG + Chr1:4831594-4831613 None:intergenic 25.0%
!! TAAGTAAAAACACAAGTTGA+TGG + Chr1:4832255-4832274 None:intergenic 25.0%
!! TAGTGAGAAGGTATAAAAAT+CGG - Chr1:4833842-4833861 MsG0180000355.01.T01:intron 25.0%
!! TATGTAACTTGTATATTGGT+AGG - Chr1:4833913-4833932 MsG0180000355.01.T01:intron 25.0%
!! TTTATTGTTTCTCAAAACTG+GGG + Chr1:4831593-4831612 None:intergenic 25.0%
!! TTTTATAAACCCGTTCAATT+TGG - Chr1:4831361-4831380 MsG0180000355.01.T01:CDS 25.0%
!! TTTTTCTCAATTAGATGTAG+GGG - Chr1:4831254-4831273 MsG0180000355.01.T01:CDS 25.0%
!! TTTTTCTTCATCATTTGCAA+GGG + Chr1:4833556-4833575 None:intergenic 25.0%
!!! ATGTTCTAGTTTCTTGATTA+GGG - Chr1:4834354-4834373 MsG0180000355.01.T01:intron 25.0%
!!! GTAAATTAAACTTAGCTTGT+AGG - Chr1:4834112-4834131 MsG0180000355.01.T01:intron 25.0%
!!! TATGTTCTAGTTTCTTGATT+AGG - Chr1:4834353-4834372 MsG0180000355.01.T01:intron 25.0%
AAACAATCTGTATGTTGTTG+AGG - Chr1:4832103-4832122 MsG0180000355.01.T01:intron 30.0%
AAACCAAAAAAGGAACAAAG+GGG + Chr1:4832600-4832619 None:intergenic 30.0%
AAACTATGAGCTTATAGAAC+TGG + Chr1:4833439-4833458 None:intergenic 30.0%
AAAGATACAACCACAATAGT+TGG - Chr1:4832746-4832765 MsG0180000355.01.T01:intron 30.0%
AACAATCTGTATGTTGTTGA+GGG - Chr1:4832104-4832123 MsG0180000355.01.T01:intron 30.0%
AACTATTGTGGTTGTATCTT+TGG + Chr1:4832747-4832766 None:intergenic 30.0%
AAGTTATAGTTCATGTGAAC+CGG - Chr1:4831700-4831719 MsG0180000355.01.T01:intron 30.0%
AATCATATGAATAGCAGAAG+AGG - Chr1:4831543-4831562 MsG0180000355.01.T01:CDS 30.0%
AATTGTATTTGGAGGATGTT+AGG - Chr1:4834260-4834279 MsG0180000355.01.T01:intron 30.0%
ACAAAAAGATATCCAATGCA+AGG - Chr1:4832312-4832331 MsG0180000355.01.T01:intron 30.0%
ACAAGTCAATAACACTTTCA+AGG + Chr1:4833657-4833676 None:intergenic 30.0%
AGTTTCTTGATTAGGGAAAT+TGG - Chr1:4834361-4834380 MsG0180000355.01.T01:intron 30.0%
ATACAAGTGCATCTAAATAG+GGG + Chr1:4831738-4831757 None:intergenic 30.0%
ATCATATGAATAGCAGAAGA+GGG - Chr1:4831544-4831563 MsG0180000355.01.T01:CDS 30.0%
ATGCCATGCAAACAATATTT+AGG + Chr1:4832867-4832886 None:intergenic 30.0%
CAAAAAGATATCCAATGCAA+GGG - Chr1:4832313-4832332 MsG0180000355.01.T01:intron 30.0%
CATGATTTAAGAACCTCATT+TGG + Chr1:4834201-4834220 None:intergenic 30.0%
CCTCTGCAATTATCAAAATA+GGG + Chr1:4832379-4832398 None:intergenic 30.0%
CTAAACCAAAAAAGGAACAA+AGG + Chr1:4832602-4832621 None:intergenic 30.0%
CTCATAGTTTCTTTACTTTC+AGG - Chr1:4833449-4833468 MsG0180000355.01.T01:CDS 30.0%
GGATCTTATTAACATACTAG+AGG - Chr1:4832334-4832353 MsG0180000355.01.T01:intron 30.0%
GTTTCTTGATTAGGGAAATT+GGG - Chr1:4834362-4834381 MsG0180000355.01.T01:intron 30.0%
TACAAACCATTTATAATGCG+CGG + Chr1:4834139-4834158 None:intergenic 30.0%
TCCTCTGCAATTATCAAAAT+AGG + Chr1:4832380-4832399 None:intergenic 30.0%
TGCAGAACAAGATTATGAAA+AGG - Chr1:4833132-4833151 MsG0180000355.01.T01:intron 30.0%
TGCCATGCAAACAATATTTA+GGG + Chr1:4832866-4832885 None:intergenic 30.0%
TTGTTGTGAACAAACTTTAG+AGG - Chr1:4832426-4832445 MsG0180000355.01.T01:intron 30.0%
TTTCTTGATTAGGGAAATTG+GGG - Chr1:4834363-4834382 MsG0180000355.01.T01:intron 30.0%
! CGATTTTGAACCAAATTGAA+CGG + Chr1:4831374-4831393 None:intergenic 30.0%
! CGTTCAATTTGGTTCAAAAT+CGG - Chr1:4831372-4831391 MsG0180000355.01.T01:CDS 30.0%
! CTTTTTCTTCATCATTTGCA+AGG + Chr1:4833557-4833576 None:intergenic 30.0%
! GATTTTGAACCAAATTGAAC+GGG + Chr1:4831373-4831392 None:intergenic 30.0%
! GCATTTTTATACACGTGTTA+TGG - Chr1:4830879-4830898 MsG0180000355.01.T01:CDS 30.0%
! GGTTTATTGTTTCTCAAAAC+TGG + Chr1:4831595-4831614 None:intergenic 30.0%
!! TTGTGTTTTGTTACGAGTAT+AGG - Chr1:4833299-4833318 MsG0180000355.01.T01:CDS 30.0%
!!! GTTTTTTTTCCCCCTTTATA+TGG - Chr1:4833611-4833630 MsG0180000355.01.T01:intron 30.0%
ACATACCTGAATTGTCCATT+GGG + Chr1:4834656-4834675 None:intergenic 35.0%
ACCAACAGCTAAACCAAAAA+AGG + Chr1:4832610-4832629 None:intergenic 35.0%
ACGATTCTTAAAAGGCTTCT+TGG - Chr1:4834403-4834422 MsG0180000355.01.T01:intron 35.0%
ACTGAACCGAACCATAAATT+TGG + Chr1:4831302-4831321 None:intergenic 35.0%
AGACATGCTACTAAAGATAG+CGG + Chr1:4834091-4834110 None:intergenic 35.0%
CTCCCTAAATATTGTTTGCA+TGG - Chr1:4832861-4832880 MsG0180000355.01.T01:intron 35.0%
CTTGCAGTTCTCAAATTCAA+CGG + Chr1:4832189-4832208 None:intergenic 35.0%
GAAAGATTAAGTCACCTTTG+TGG + Chr1:4833388-4833407 None:intergenic 35.0%
GAGCTTATAGAACTGGTAAA+AGG + Chr1:4833432-4833451 None:intergenic 35.0%
GCAAAAAATGCTGGTGTAAA+TGG - Chr1:4833810-4833829 MsG0180000355.01.T01:intron 35.0%
GCCAGAATAAGCAAAAAAGT+GGG + Chr1:4830918-4830937 None:intergenic 35.0%
GGAAAAGAAATTGAGAGTTG+AGG - Chr1:4833350-4833369 MsG0180000355.01.T01:CDS 35.0%
GGATATTGAACAAGAAGCTT+TGG - Chr1:4832397-4832416 MsG0180000355.01.T01:intron 35.0%
GTTAAGCAATGTAATCCCAA+AGG + Chr1:4830988-4831007 None:intergenic 35.0%
GTTAATAAGATCCCTTGCAT+TGG + Chr1:4832327-4832346 None:intergenic 35.0%
TACATACCTGAATTGTCCAT+TGG + Chr1:4834657-4834676 None:intergenic 35.0%
TATCTTCCTAATTCGCTTAC+AGG - Chr1:4832639-4832658 MsG0180000355.01.T01:intron 35.0%
TATGAAACACGAACACCTTT+GGG - Chr1:4831018-4831037 MsG0180000355.01.T01:intron 35.0%
TATGAAGATTTAATGTCGGC+TGG - Chr1:4833986-4834005 MsG0180000355.01.T01:intron 35.0%
TCAAGATGGCAATATCATCA+AGG + Chr1:4832509-4832528 None:intergenic 35.0%
TCACTGTCTGTAACAAAGTA+GGG + Chr1:4832158-4832177 None:intergenic 35.0%
TCATATGAATAGCAGAAGAG+GGG - Chr1:4831545-4831564 MsG0180000355.01.T01:CDS 35.0%
TGCAAACAATATTTAGGGAG+TGG + Chr1:4832861-4832880 None:intergenic 35.0%
TTATAAACCTCCTGTCAAGA+TGG + Chr1:4832523-4832542 None:intergenic 35.0%
TTATAATTAAAACGTGGCGC+AGG - Chr1:4833737-4833756 MsG0180000355.01.T01:intron 35.0%
TTGGTTCAAAATCGGTGAAT+TGG - Chr1:4831380-4831399 MsG0180000355.01.T01:CDS 35.0%
! ATGAAGATTTAATGTCGGCT+GGG - Chr1:4833987-4834006 MsG0180000355.01.T01:intron 35.0%
! ATTTTATAGGTTGTTGCAGC+TGG - Chr1:4830737-4830756 MsG0180000355.01.T01:CDS 35.0%
! CTGTGTTGTTGTTGAGATAA+AGG - Chr1:4834605-4834624 MsG0180000355.01.T01:intron 35.0%
! GTCACTGGACTTTTAAATGT+GGG - Chr1:4834310-4834329 MsG0180000355.01.T01:intron 35.0%
! TAAGAATGTTTTCGCAACAG+AGG + Chr1:4834577-4834596 None:intergenic 35.0%
! TGTCACTGGACTTTTAAATG+TGG - Chr1:4834309-4834328 MsG0180000355.01.T01:intron 35.0%
!! CTTAATTTGTGAAACTCGCT+TGG + Chr1:4832798-4832817 None:intergenic 35.0%
!! GTTTTGTTACGAGTATAGGT+TGG - Chr1:4833303-4833322 MsG0180000355.01.T01:CDS 35.0%
!! TGCTTGTTGTTACATGATTG+AGG - Chr1:4830692-4830711 MsG0180000355.01.T01:CDS 35.0%
!! TTGAGTAAGGTTGGTAGAAA+GGG - Chr1:4832047-4832066 MsG0180000355.01.T01:intron 35.0%
!!! CCCTATTTTGATAATTGCAG+AGG - Chr1:4832376-4832395 MsG0180000355.01.T01:intron 35.0%
!!! TCCCACTTTTTTGCTTATTC+TGG - Chr1:4830914-4830933 MsG0180000355.01.T01:CDS 35.0%
!!! TCCTTTTTTGGTTTAGCTGT+TGG - Chr1:4832606-4832625 MsG0180000355.01.T01:intron 35.0%
!!! TTTCCCCTTTGTTCCTTTTT+TGG - Chr1:4832594-4832613 MsG0180000355.01.T01:intron 35.0%
!!! TTTTGGTTTCACACCAAATG+AGG - Chr1:4834185-4834204 MsG0180000355.01.T01:intron 35.0%
AAAAGGAGAAGCTGAACGAA+AGG - Chr1:4833149-4833168 MsG0180000355.01.T01:CDS 40.0%
AAGCACAAACACCTAACATG+AGG + Chr1:4831882-4831901 None:intergenic 40.0%
AATGCGAATATTTGGCCTGA+TGG - Chr1:4832939-4832958 MsG0180000355.01.T01:CDS 40.0%
ACAAACTGAGACAGAACTCA+AGG - Chr1:4833329-4833348 MsG0180000355.01.T01:CDS 40.0%
ACAATATTTAGGGAGTGGAG+AGG + Chr1:4832856-4832875 None:intergenic 40.0%
ACAGTACCTGTAAGCGAATT+AGG + Chr1:4832648-4832667 None:intergenic 40.0%
ACTCTTTGGACGTATCTATG+GGG - Chr1:4831143-4831162 MsG0180000355.01.T01:intron 40.0%
ACTGAAGATTGCAGCACTTA+AGG - Chr1:4832452-4832471 MsG0180000355.01.T01:intron 40.0%
ACTTCCATCACCAACTATTG+TGG + Chr1:4832759-4832778 None:intergenic 40.0%
AGTGTAGTGTCACACATAGA+AGG + Chr1:4834455-4834474 None:intergenic 40.0%
ATTCGTGCATCGTAGGTATT+AGG + Chr1:4830964-4830983 None:intergenic 40.0%
CACTCTTTGGACGTATCTAT+GGG - Chr1:4831142-4831161 MsG0180000355.01.T01:intron 40.0%
CGCCAGAATAAGCAAAAAAG+TGG + Chr1:4830919-4830938 None:intergenic 40.0%
CGTTGAATTTGAGAACTGCA+AGG - Chr1:4832187-4832206 MsG0180000355.01.T01:CDS 40.0%
CTAAATTAGCCCACCCAAAT+TGG + Chr1:4833027-4833046 None:intergenic 40.0%
CTAGAGGACGCAATTAGAAA+CGG - Chr1:4832350-4832369 MsG0180000355.01.T01:intron 40.0%
CTATGAAACACGAACACCTT+TGG - Chr1:4831017-4831036 MsG0180000355.01.T01:intron 40.0%
CTCACTGTCTGTAACAAAGT+AGG + Chr1:4832159-4832178 None:intergenic 40.0%
GAAAGGATTGCAAAACTGTC+TGG - Chr1:4833166-4833185 MsG0180000355.01.T01:CDS 40.0%
GACTTAGCTTAGACAAAGCT+GGG - Chr1:4832684-4832703 MsG0180000355.01.T01:intron 40.0%
GATGATATTGCCATCTTGAC+AGG - Chr1:4832510-4832529 MsG0180000355.01.T01:intron 40.0%
GCAAAAAAGTGGGAAGTTTG+AGG + Chr1:4830908-4830927 None:intergenic 40.0%
GGTAGGAAATATGATAGCTG+AGG - Chr1:4832022-4832041 MsG0180000355.01.T01:intron 40.0%
TACGGATATAATGCTGCAAC+TGG - Chr1:4833959-4833978 MsG0180000355.01.T01:intron 40.0%
TCCAACGACAATACGAGATA+CGG - Chr1:4833941-4833960 MsG0180000355.01.T01:intron 40.0%
TGACTTAGCTTAGACAAAGC+TGG - Chr1:4832683-4832702 MsG0180000355.01.T01:intron 40.0%
TGGCAATATCATCAAGGTAC+TGG + Chr1:4832503-4832522 None:intergenic 40.0%
TGGGATCATTGATCCAACAA+AGG - Chr1:4834006-4834025 MsG0180000355.01.T01:intron 40.0%
TGTTGAGATAAAGGAACCTG+AGG - Chr1:4834614-4834633 MsG0180000355.01.T01:intron 40.0%
TTCAACGAGTTCACTGAGAT+GGG + Chr1:4833222-4833241 None:intergenic 40.0%
TTTCAACGAGTTCACTGAGA+TGG + Chr1:4833223-4833242 None:intergenic 40.0%
TTTGCTCAGACTTGCATCAA+AGG - Chr1:4833512-4833531 MsG0180000355.01.T01:intron 40.0%
! AATATTTGGCCTGATGGTGT+TGG - Chr1:4832945-4832964 MsG0180000355.01.T01:CDS 40.0%
! ATAGGGGTGTGCATAAAAAC+CGG + Chr1:4831722-4831741 None:intergenic 40.0%
! ATTAGATGTAGGGGTGTGAA+TGG - Chr1:4831263-4831282 MsG0180000355.01.T01:CDS 40.0%
! TACAGGTACTGTTATCAGAG+AGG - Chr1:4832656-4832675 MsG0180000355.01.T01:intron 40.0%
!! ACAACCACAATAGTTGGTGA+TGG - Chr1:4832752-4832771 MsG0180000355.01.T01:intron 40.0%
!! CAAAGGTGTTCGTGTTTCAT+AGG + Chr1:4831019-4831038 None:intergenic 40.0%
!! CAGATTTGTTGAAGTGTCAC+TGG - Chr1:4834295-4834314 MsG0180000355.01.T01:intron 40.0%
!! GTTGAGTAAGGTTGGTAGAA+AGG - Chr1:4832046-4832065 MsG0180000355.01.T01:intron 40.0%
AAAGCTGGGAATGAGGTTCT+AGG - Chr1:4832698-4832717 MsG0180000355.01.T01:intron 45.0%
AACACACCTTAGGCACTCTT+TGG - Chr1:4831129-4831148 MsG0180000355.01.T01:intron 45.0%
AATTAAAACGTGGCGCAGGT+TGG - Chr1:4833741-4833760 MsG0180000355.01.T01:intron 45.0%
ACATTGACACCTGTGTGTGT+GGG + Chr1:4831823-4831842 None:intergenic 45.0%
AGGATTGCAAAACTGTCTGG+CGG - Chr1:4833169-4833188 MsG0180000355.01.T01:CDS 45.0%
ATACCACGTGTGATAAGCAC+AGG + Chr1:4830770-4830789 None:intergenic 45.0%
ATATTTAGGGAGTGGAGAGG+CGG + Chr1:4832853-4832872 None:intergenic 45.0%
ATCAAAGGTGGATGCCATCA+AGG - Chr1:4833527-4833546 MsG0180000355.01.T01:intron 45.0%
CAACATGTCTGCCTCATGTT+AGG - Chr1:4831868-4831887 MsG0180000355.01.T01:intron 45.0%
CAGAAGAGGGGTTGTGAAAT+GGG - Chr1:4831557-4831576 MsG0180000355.01.T01:CDS 45.0%
CATAGAAGGCAGAAACATGC+AGG + Chr1:4834441-4834460 None:intergenic 45.0%
CCTAAGGTGTGTTGAAGCAA+AGG + Chr1:4831122-4831141 None:intergenic 45.0%
CCTTTGCTTCAACACACCTT+AGG - Chr1:4831119-4831138 MsG0180000355.01.T01:intron 45.0%
CTTAGACAAAGCTGGGAATG+AGG - Chr1:4832691-4832710 MsG0180000355.01.T01:intron 45.0%
GAATCAAACCTGAGACCTTG+AGG + Chr1:4832995-4833014 None:intergenic 45.0%
GATATTGCCATCTTGACAGG+AGG - Chr1:4832513-4832532 MsG0180000355.01.T01:intron 45.0%
GCACTCTTTGGACGTATCTA+TGG - Chr1:4831141-4831160 MsG0180000355.01.T01:intron 45.0%
GGATAGTGAATTGGCTGATG+TGG - Chr1:4831971-4831990 MsG0180000355.01.T01:CDS 45.0%
GGTAACCCAATGGACAATTC+AGG - Chr1:4834648-4834667 MsG0180000355.01.T01:intron 45.0%
GTTGTGGTTGTGTGAATTGC+AGG - Chr1:4831944-4831963 MsG0180000355.01.T01:intron 45.0%
GTTGTGTGAATTGCAGGTTG+AGG - Chr1:4831950-4831969 MsG0180000355.01.T01:intron 45.0%
TACAATACCCTCCTCAACAG+CGG + Chr1:4833475-4833494 None:intergenic 45.0%
TACCACGTGTGATAAGCACA+GGG + Chr1:4830769-4830788 None:intergenic 45.0%
TACGATGCACGAATGCCTTT+GGG - Chr1:4830970-4830989 MsG0180000355.01.T01:intron 45.0%
TAGTGCAGGGAACAATCATG+AGG - Chr1:4832001-4832020 MsG0180000355.01.T01:CDS 45.0%
TATAACACACCCACACACAC+AGG - Chr1:4831811-4831830 MsG0180000355.01.T01:CDS 45.0%
TCCGTATCTCGTATTGTCGT+TGG + Chr1:4833945-4833964 None:intergenic 45.0%
TTGTCCATTGGGTTACCAAC+AGG + Chr1:4834645-4834664 None:intergenic 45.0%
! AGGTACTGTTATCAGAGAGG+AGG - Chr1:4832659-4832678 MsG0180000355.01.T01:intron 45.0%
! ATTTGCAAGGGTAGCCTTGA+TGG + Chr1:4833544-4833563 None:intergenic 45.0%
! GCAGGTTGAGGATAGTGAAT+TGG - Chr1:4831962-4831981 MsG0180000355.01.T01:CDS 45.0%
! TCGCTTGGTAACTGCTTCTT+GGG + Chr1:4832783-4832802 None:intergenic 45.0%
! TGGCAGTGTTGTTAGTGAGA+AGG - Chr1:4833830-4833849 MsG0180000355.01.T01:intron 45.0%
!! ACACGAACACCTTTGGGATT+AGG - Chr1:4831024-4831043 MsG0180000355.01.T01:intron 45.0%
!! ATACGTCCAAAGAGTGCCTA+AGG + Chr1:4831138-4831157 None:intergenic 45.0%
!! GTTGAGGAGGGTATTGTAGT+TGG - Chr1:4833477-4833496 MsG0180000355.01.T01:CDS 45.0%
!!! TTAAAATTTTAAAAACAATT+TGG + Chr1:4831616-4831635 None:intergenic 5.0%
!!! TTGTTTTTAAAATTTTAAAT+TGG - Chr1:4831618-4831637 MsG0180000355.01.T01:intron 5.0%
AACCCTGTGCTTATCACACG+TGG - Chr1:4830764-4830783 MsG0180000355.01.T01:CDS 50.0%
ATCTTTGGTGAGCACCACCT+TGG + Chr1:4832732-4832751 None:intergenic 50.0%
ATGTGGCAGCAGTTAGTGCA+GGG - Chr1:4831988-4832007 MsG0180000355.01.T01:CDS 50.0%
ATTGCAGCACTTAAGGCTCC+TGG - Chr1:4832459-4832478 MsG0180000355.01.T01:intron 50.0%
CTACGATGCACGAATGCCTT+TGG - Chr1:4830969-4830988 MsG0180000355.01.T01:intron 50.0%
CTCTTGCGTTCTCCAAATCC+AGG + Chr1:4832480-4832499 None:intergenic 50.0%
GACATTGACACCTGTGTGTG+TGG + Chr1:4831824-4831843 None:intergenic 50.0%
GAGAGGGGGAAACCTCAATT+TGG + Chr1:4832823-4832842 None:intergenic 50.0%
GCACGTAAGCCTAATCCCAA+AGG + Chr1:4831036-4831055 None:intergenic 50.0%
GCACTTAAGGCTCCTGGATT+TGG - Chr1:4832465-4832484 MsG0180000355.01.T01:intron 50.0%
GCAGAAGAGGGGTTGTGAAA+TGG - Chr1:4831556-4831575 MsG0180000355.01.T01:CDS 50.0%
GCAGGGAACAATCATGAGGT+AGG - Chr1:4832005-4832024 MsG0180000355.01.T01:CDS 50.0%
GCTCAGACTTGCATCAAAGG+TGG - Chr1:4833515-4833534 MsG0180000355.01.T01:intron 50.0%
GGACGCTCTTAATGCCACAA+AGG - Chr1:4833371-4833390 MsG0180000355.01.T01:CDS 50.0%
GTAGGGCCGCGCATTATAAA+TGG - Chr1:4834130-4834149 MsG0180000355.01.T01:intron 50.0%
GTCTCAGGTTTGATTCTCCG+CGG - Chr1:4832999-4833018 MsG0180000355.01.T01:CDS 50.0%
TATTTAGGGAGTGGAGAGGC+GGG + Chr1:4832852-4832871 None:intergenic 50.0%
TCAAACCTGAGACCTTGAGG+AGG + Chr1:4832992-4833011 None:intergenic 50.0%
TTACTTTCAGGCCGCTGTTG+AGG - Chr1:4833461-4833480 MsG0180000355.01.T01:CDS 50.0%
! ATTCTCCGCGGTGCCAATTT+GGG - Chr1:4833011-4833030 MsG0180000355.01.T01:CDS 50.0%
! CTCGCTTGGTAACTGCTTCT+TGG + Chr1:4832784-4832803 None:intergenic 50.0%
! GAAGCATCCTACTGTTGTCC+AGG - Chr1:4834524-4834543 MsG0180000355.01.T01:CDS 50.0%
! GAGGGCATGCAATTTGATCG+AGG - Chr1:4832122-4832141 MsG0180000355.01.T01:intron 50.0%
!! AAAGGGTGTCGTGACACTTG+AGG - Chr1:4832064-4832083 MsG0180000355.01.T01:intron 50.0%
!! AGGGTATTGTAGTTGGCGGT+GGG - Chr1:4833484-4833503 MsG0180000355.01.T01:CDS 50.0%
!! CAAAGGCATTCGTGCATCGT+AGG + Chr1:4830971-4830990 None:intergenic 50.0%
!! GAATGAGGTTCTAGGCACTG+CGG - Chr1:4832706-4832725 MsG0180000355.01.T01:intron 50.0%
!! GAGGAGGGTATTGTAGTTGG+CGG - Chr1:4833480-4833499 MsG0180000355.01.T01:CDS 50.0%
!! GATAGCTGAGGCGTTGAGTA+AGG - Chr1:4832034-4832053 MsG0180000355.01.T01:intron 50.0%
!! TGCACCTGTTGGTAACCCAA+TGG - Chr1:4834638-4834657 MsG0180000355.01.T01:intron 50.0%
ATTTAGGGAGTGGAGAGGCG+GGG + Chr1:4832851-4832870 None:intergenic 55.0%
CCAAGCAACATCTGACCACC+TGG + Chr1:4834545-4834564 None:intergenic 55.0%
CCAGGTGGTCAGATGTTGCT+TGG - Chr1:4834542-4834561 MsG0180000355.01.T01:CDS 55.0%
CTGACCACCTGGACAACAGT+AGG + Chr1:4834534-4834553 None:intergenic 55.0%
GATGTGGCAGCAGTTAGTGC+AGG - Chr1:4831987-4832006 MsG0180000355.01.T01:CDS 55.0%
GCATCCTACTGTTGTCCAGG+TGG - Chr1:4834527-4834546 MsG0180000355.01.T01:CDS 55.0%
TCGTGACACTTGAGGAGGGA+AGG - Chr1:4832072-4832091 MsG0180000355.01.T01:intron 55.0%
TGCAAAACTGTCTGGCGGTG+TGG - Chr1:4833174-4833193 MsG0180000355.01.T01:CDS 55.0%
TGGCGGTGTGGCTGTAATTC+AGG - Chr1:4833186-4833205 MsG0180000355.01.T01:CDS 55.0%
TTACCAACAGGTGCAGCCTC+AGG + Chr1:4834633-4834652 None:intergenic 55.0%
TTGGAGTGTGCTCCTCCTCA+AGG - Chr1:4832977-4832996 MsG0180000355.01.T01:CDS 55.0%
TTTCAGGCCGCTGTTGAGGA+GGG - Chr1:4833465-4833484 MsG0180000355.01.T01:CDS 55.0%
! GATTCTCCGCGGTGCCAATT+TGG - Chr1:4833010-4833029 MsG0180000355.01.T01:CDS 55.0%
! GGTGTCGTGACACTTGAGGA+GGG - Chr1:4832068-4832087 MsG0180000355.01.T01:intron 55.0%
! TTGAGGAGGAGCACACTCCA+AGG + Chr1:4832978-4832997 None:intergenic 55.0%
!! ATGGTGTTGGCTTGGGACCT+TGG - Chr1:4832958-4832977 MsG0180000355.01.T01:CDS 55.0%
!! GAGGGTATTGTAGTTGGCGG+TGG - Chr1:4833483-4833502 MsG0180000355.01.T01:CDS 55.0%
!! GCTGAGGCGTTGAGTAAGGT+TGG - Chr1:4832038-4832057 MsG0180000355.01.T01:intron 55.0%
!! TGGCCTGATGGTGTTGGCTT+GGG - Chr1:4832951-4832970 MsG0180000355.01.T01:CDS 55.0%
!! TTGGCCTGATGGTGTTGGCT+TGG - Chr1:4832950-4832969 MsG0180000355.01.T01:CDS 55.0%
AGAGGCGGGGAAAGAGAGAG+GGG + Chr1:4832838-4832857 None:intergenic 60.0%
CTTTCAGGCCGCTGTTGAGG+AGG - Chr1:4833464-4833483 MsG0180000355.01.T01:CDS 60.0%
GAACCTGAGGCTGCACCTGT+TGG - Chr1:4834627-4834646 MsG0180000355.01.T01:intron 60.0%
GAGAGGCGGGGAAAGAGAGA+GGG + Chr1:4832839-4832858 None:intergenic 60.0%
GGTCCCAAGCCAACACCATC+AGG + Chr1:4832957-4832976 None:intergenic 60.0%
GTGCTCCTCCTCAAGGTCTC+AGG - Chr1:4832984-4833003 MsG0180000355.01.T01:CDS 60.0%
! GGGTGTCGTGACACTTGAGG+AGG - Chr1:4832067-4832086 MsG0180000355.01.T01:intron 60.0%
! TCCGCGGTGCCAATTTGGGT+GGG - Chr1:4833015-4833034 MsG0180000355.01.T01:CDS 60.0%
GAGGCGGGGAAAGAGAGAGG+GGG + Chr1:4832837-4832856 None:intergenic 65.0%
GCCCACCCAAATTGGCACCG+CGG + Chr1:4833019-4833038 None:intergenic 65.0%
GGAGAGGCGGGGAAAGAGAG+AGG + Chr1:4832840-4832859 None:intergenic 65.0%
! CTCCGCGGTGCCAATTTGGG+TGG - Chr1:4833014-4833033 MsG0180000355.01.T01:CDS 65.0%
! TCTAGGCACTGCGGCCAAGG+TGG - Chr1:4832715-4832734 MsG0180000355.01.T01:intron 65.0%
!! GGTTCTAGGCACTGCGGCCA+AGG - Chr1:4832712-4832731 MsG0180000355.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 4830674 4834677 4830674 ID=MsG0180000355.01;Name=MsG0180000355.01
Chr1 mRNA 4830674 4834677 4830674 ID=MsG0180000355.01.T01;Parent=MsG0180000355.01;Name=MsG0180000355.01.T01;_AED=0.45;_eAED=0.52;_QI=0|0.55|0.4|1|0.66|0.5|10|0|483
Chr1 exon 4834669 4834677 4834669 ID=MsG0180000355.01.T01:exon:5277;Parent=MsG0180000355.01.T01
Chr1 exon 4834457 4834605 4834457 ID=MsG0180000355.01.T01:exon:5278;Parent=MsG0180000355.01.T01
Chr1 exon 4833143 4833518 4833143 ID=MsG0180000355.01.T01:exon:5279;Parent=MsG0180000355.01.T01
Chr1 exon 4832921 4833052 4832921 ID=MsG0180000355.01.T01:exon:5280;Parent=MsG0180000355.01.T01
Chr1 exon 4832144 4832221 4832144 ID=MsG0180000355.01.T01:exon:5281;Parent=MsG0180000355.01.T01
Chr1 exon 4831959 4832030 4831959 ID=MsG0180000355.01.T01:exon:5282;Parent=MsG0180000355.01.T01
Chr1 exon 4831776 4831880 4831776 ID=MsG0180000355.01.T01:exon:5283;Parent=MsG0180000355.01.T01
Chr1 exon 4831500 4831592 4831500 ID=MsG0180000355.01.T01:exon:5284;Parent=MsG0180000355.01.T01
Chr1 exon 4831240 4831416 4831240 ID=MsG0180000355.01.T01:exon:5285;Parent=MsG0180000355.01.T01
Chr1 exon 4830674 4830934 4830674 ID=MsG0180000355.01.T01:exon:5286;Parent=MsG0180000355.01.T01
Chr1 CDS 4834669 4834677 4834669 ID=MsG0180000355.01.T01:cds;Parent=MsG0180000355.01.T01
Chr1 CDS 4834457 4834605 4834457 ID=MsG0180000355.01.T01:cds;Parent=MsG0180000355.01.T01
Chr1 CDS 4833143 4833518 4833143 ID=MsG0180000355.01.T01:cds;Parent=MsG0180000355.01.T01
Chr1 CDS 4832921 4833052 4832921 ID=MsG0180000355.01.T01:cds;Parent=MsG0180000355.01.T01
Chr1 CDS 4832144 4832221 4832144 ID=MsG0180000355.01.T01:cds;Parent=MsG0180000355.01.T01
Chr1 CDS 4831959 4832030 4831959 ID=MsG0180000355.01.T01:cds;Parent=MsG0180000355.01.T01
Chr1 CDS 4831776 4831880 4831776 ID=MsG0180000355.01.T01:cds;Parent=MsG0180000355.01.T01
Chr1 CDS 4831500 4831592 4831500 ID=MsG0180000355.01.T01:cds;Parent=MsG0180000355.01.T01
Chr1 CDS 4831240 4831416 4831240 ID=MsG0180000355.01.T01:cds;Parent=MsG0180000355.01.T01
Chr1 CDS 4830674 4830934 4830674 ID=MsG0180000355.01.T01:cds;Parent=MsG0180000355.01.T01
Gene Sequence

>MsG0180000355.01.T01

ATGTGCTTGGTTGTTGCAGCTGGTGCAAACCCTGTGCTTATCACACGTGGTATTGAGAAGACAGCGAAAGCTCTTGTTGCTGAACTTAAACTAATGTCAAAAGAGGTGAAGTCGTTTTCTTGTGTTTTTTATGTATTTTTATGCATTTTTATACACGTGTGTCAATGTCCTATGTTTTTTACATTAATAGTGTCAACATGTCTGCCTCATGTTAGGTGTTTGTGCTTCATAAATGATTTCCCTCATCTTTTTCATTTAAACTTAGAAGAGTTGTGGTTGTGTGAATTGCAGGTTGAGGATAGTGAATTGGCTGATGTGGCAGCAGTTAGTGCAGGGAACAATCATGAGGTAGGAAATATGATAGCTGAGGCGTTGAGTAAGGTTGGTAGAAAGGGTGTCGTGACACTTGAGGAGGGAAGGAGTGCTGAAAACAATCTGTATGTTGTTGAGGGCATGCAATTTGATCGAGGATATATTTCACCCTACTTTGTTACAGACAGTGAGAAAATGACCGTTGAATTTGAGAACTGCAAGTTGCTTTTAGTTGACAAAAAGATATCCAATGCAAGGGATCTTATTAACATACTAGAGGACGCAATTAGAAACGGATTCCCTATTTTGATAATTGCAGAGGATATTGAACAAGAAGCTTTGGCAACTCTTGTTGCTGCAGAACAAGATTATGAAAAGGAGAAGCTGAACGAAAGGATTGCAAAACTGTCTGGCGGTGTGGCTGTAATTCAGGTTGGTGCACAAACTGAGACAGAACTCAAGGAAAAGAAATTGAGAGTTGAGGACGCTCTTAATGCCACAAAGGCCGCTGTTGAGGAGGGTATTGTAGTTGGCGGTGGGTGCACTTTGCTCAGACTTGCATCAAAGGTGGATGCCATCAAGGCTACCCTTGCAAATGATGAAGAAAAAGTTGGAGCAGACATTGTTAAAAGAGCTCTTAGTTACCCTCTGAAATTAATAGCAAAAAATGCTGGTGTAAATGGCAGTGTTGTTAGTGAGAAGGTTCTATCCAACGACAATACGAGATACGGATATAATGCTGCAACTGGAAAATATGAAGATTTAATGTCGGCTGGGATCATTGATCCAACAAAGGTGATTTATAGATTCATTAATGTACTGTATTGTTTTTTAACTTATCTGCATGTGAATTTACCGCTATCTTTAGTAGCATGTCTAGCTTCTTGGAACATAGCTTATCCTGCATGTTTCTGCCTTCTATGTGTGACACTACACTCTATCATGTTTCTGCATTCTTTATACTTGATACGAAACATTGATAATCTGAAGCATCCTACTGTTGTCCAGGTGGTCAGATGTTGCTTGGAACATGCAGCCTCTGTTGCGAAAACATTCTTAATGTCAGACTGTGTTGTTGTTGAGATAAAGGAACCTGAGGCTGCACCTGTTGGTAACCCAATGGACAATTCAGGTATGTAG

Protein sequence

>MsG0180000355.01.T01

MCLVVAAGANPVLITRGIEKTAKALVAELKLMSKEVKSFSCVFYVFLCIFIHVCQCPMFFTLIVSTCLPHVRCLCFINDFPHLFHLNLEELWLCELQVEDSELADVAAVSAGNNHEVGNMIAEALSKVGRKGVVTLEEGRSAENNLYVVEGMQFDRGYISPYFVTDSEKMTVEFENCKLLLVDKKISNARDLINILEDAIRNGFPILIIAEDIEQEALATLVAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKATLANDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNTRYGYNAATGKYEDLMSAGIIDPTKVIYRFINVLYCFLTYLHVNLPLSLVACLASWNIAYPACFCLLCVTLHSIMFLHSLYLIRNIDNLKHPTVVQVVRCCLEHAASVAKTFLMSDCVVVEIKEPEAAPVGNPMDNSGM*