AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016472.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016472.01.T01 MTR_7g088050 93.262 282 14 2 1 281 1 278 0.0 503
MsG0380016472.01.T01 MTR_3g090160 92.527 281 17 1 4 284 6 282 5.41e-180 499
MsG0380016472.01.T01 MTR_7g088050 93.886 229 9 2 1 228 1 225 7.88e-144 404
MsG0380016472.01.T01 MTR_2g030160 34.191 272 154 8 1 255 174 437 2.58e-33 129
MsG0380016472.01.T01 MTR_2g030630 36.000 250 140 6 1 240 666 905 3.52e-33 129
MsG0380016472.01.T01 MTR_8g088370 36.449 214 118 4 38 240 742 948 5.37e-32 125
MsG0380016472.01.T01 MTR_4g119910 36.364 209 115 4 38 235 623 824 2.16e-30 120
MsG0380016472.01.T01 MTR_4g115710 30.488 246 145 7 38 269 132 365 4.13e-22 96.3
MsG0380016472.01.T01 MTR_4g115710 30.488 246 145 7 38 269 177 410 4.86e-22 96.3
MsG0380016472.01.T01 MTR_4g115710 30.488 246 145 7 38 269 176 409 4.95e-22 96.3
MsG0380016472.01.T01 MTR_4g115710 30.488 246 145 7 38 269 42 275 5.19e-22 95.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016472.01.T01 AT5G05000 66.548 281 90 1 1 281 1 277 1.41e-138 393
MsG0380016472.01.T01 AT5G05000 66.548 281 90 1 1 281 1 277 1.41e-138 393
MsG0380016472.01.T01 AT5G05000 66.548 281 90 1 1 281 1 277 1.41e-138 393
MsG0380016472.01.T01 AT1G02280 60.727 275 104 1 7 281 5 275 5.13e-121 348
MsG0380016472.01.T01 AT1G02280 60.727 275 104 1 7 281 5 275 5.13e-121 348
MsG0380016472.01.T01 AT3G16620 35.600 250 141 6 1 240 418 657 8.35e-36 136
MsG0380016472.01.T01 AT2G16640 36.508 252 136 7 1 240 536 775 3.83e-34 131
MsG0380016472.01.T01 AT2G16640 36.508 252 136 7 1 240 536 775 3.83e-34 131
MsG0380016472.01.T01 AT2G16640 36.508 252 136 7 1 240 536 775 3.83e-34 131
MsG0380016472.01.T01 AT4G02510 37.333 225 129 4 19 235 836 1056 1.87e-29 118
MsG0380016472.01.T01 AT4G02510 37.333 225 129 4 19 235 836 1056 1.87e-29 118
MsG0380016472.01.T01 AT4G02510 37.333 225 129 4 19 235 836 1056 1.87e-29 118
MsG0380016472.01.T01 AT4G02510 37.333 225 129 4 19 235 836 1056 1.87e-29 118
MsG0380016472.01.T01 AT5G20300 34.135 208 120 5 38 237 166 364 8.72e-23 98.6
MsG0380016472.01.T01 AT5G20300 34.135 208 120 5 38 237 166 364 8.72e-23 98.6
MsG0380016472.01.T01 AT5G20300 34.135 208 120 5 38 237 166 364 8.72e-23 98.6
MsG0380016472.01.T01 AT5G20300 34.135 208 120 5 38 237 166 364 8.72e-23 98.6
MsG0380016472.01.T01 AT5G20300 34.135 208 120 5 38 237 38 236 1.26e-22 97.8

Find 78 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTGTCATATTTGCTTTAC+AGG 0.158706 3:-83941792 MsG0380016472.01.T01:CDS
CTGAGCAGCATCCTTCTTTA+AGG 0.162587 3:+83942526 None:intergenic
AACCAAGTTGCTTGAACTTT+TGG 0.223688 3:-83943495 MsG0380016472.01.T01:CDS
TTTCCTCTCTGATTTGGATT+TGG 0.300460 3:+83941824 None:intergenic
ATGGAATTAGTGGAACATTA+TGG 0.310688 3:-83943576 MsG0380016472.01.T01:intron
GGTGGCGATTAGTCCCTTTC+AGG 0.325522 3:-83943102 MsG0380016472.01.T01:CDS
ATGCAATTTCTGTGATTGTT+TGG 0.334323 3:+83941894 None:intergenic
AGCAACTTGGTTTGCGTAGC+AGG 0.344554 3:+83943506 None:intergenic
CACATAAAGCAGAACATCTA+TGG 0.349609 3:+83942751 None:intergenic
ATCCATCCGGTGGAGAGAAC+TGG 0.362190 3:+83942615 None:intergenic
AAAGCTATAACTGATAGTTT+TGG 0.367549 3:-83942680 MsG0380016472.01.T01:CDS
TTCTTCCAAATGGGATTGCT+TGG 0.375270 3:-83941931 MsG0380016472.01.T01:CDS
CAAATCAGAGAGGAAAACTA+TGG 0.387127 3:-83941817 MsG0380016472.01.T01:CDS
GGAATCCAAGCAATCCCATT+TGG 0.391991 3:+83941926 None:intergenic
ACCTTTCCCCATCACAAGTA+TGG 0.399619 3:+83943172 None:intergenic
CTTGCTCGCGACACCATAAC+AGG 0.401022 3:+83942975 None:intergenic
TGGTGACAGGTTCTTCCAAA+TGG 0.415072 3:-83941941 MsG0380016472.01.T01:intron
TATAATTTGTAACAGAGCTT+CGG 0.416999 3:+83942562 None:intergenic
CAGGTAATACTTTCCTGTGA+TGG 0.417245 3:-83943083 MsG0380016472.01.T01:intron
TCAACTGTGAACTCTATCAT+TGG 0.422316 3:-83943134 MsG0380016472.01.T01:CDS
CAACTGTGAACTCTATCATT+GGG 0.422468 3:-83943133 MsG0380016472.01.T01:CDS
AAAACTATCAGTTATAGCTT+TGG 0.422774 3:+83942682 None:intergenic
TTTGAGAAGAACTCATCATA+AGG 0.426532 3:+83942590 None:intergenic
CTTAAAGAAGGATGCTGCTC+AGG 0.431808 3:-83942525 MsG0380016472.01.T01:intron
CAACAAGTTCGTGAGTGGTC+TGG 0.434624 3:-83943545 MsG0380016472.01.T01:CDS
TTTATCTCAAACACTTCCTC+AGG 0.437695 3:-83943698 MsG0380016472.01.T01:intron
GGAAGGGCCAAGACCTGTTA+TGG 0.439208 3:-83942988 MsG0380016472.01.T01:intron
CATAGATGTTCTGCTTTATG+TGG 0.447325 3:-83942750 MsG0380016472.01.T01:CDS
TCCCAAAAGTTCAAGCAACT+TGG 0.459219 3:+83943493 None:intergenic
GTTGACAAGAATTTGATTGA+CGG 0.472003 3:-83941848 MsG0380016472.01.T01:CDS
CTGTTACAAATTATAAAATC+AGG 0.473222 3:-83942554 MsG0380016472.01.T01:CDS
GATACTCCTGGTCTTATTGA+AGG 0.474002 3:-83942927 MsG0380016472.01.T01:CDS
CAGGAAAGTATTACCTGAAA+GGG 0.490123 3:+83943089 None:intergenic
CGCGACACCATAACAGGTCT+TGG 0.490128 3:+83942981 None:intergenic
GGTGACAGGTTCTTCCAAAT+GGG 0.497063 3:-83941940 MsG0380016472.01.T01:intron
ATGGTGTCGCGAGCAAGGGC+TGG 0.505340 3:-83942969 MsG0380016472.01.T01:CDS
CTCTATCATTGGGGAAAGAG+TGG 0.517485 3:-83943123 MsG0380016472.01.T01:CDS
CTCCTTGACCATACTTGTGA+TGG 0.518881 3:-83943180 MsG0380016472.01.T01:CDS
ATCAGGTGCCTCCTTAAAGA+AGG 0.518918 3:-83942537 MsG0380016472.01.T01:CDS
ACCTGTAAAGCAAATATGAC+AGG 0.520471 3:+83941791 None:intergenic
CTGTTATGGTGTCGCGAGCA+AGG 0.521500 3:-83942974 MsG0380016472.01.T01:CDS
TCCATCCGGTGGAGAGAACT+GGG 0.522554 3:+83942616 None:intergenic
TTTCTGTGATTGTTTGGACT+AGG 0.530196 3:+83941900 None:intergenic
TACTCCTGGTCTTATTGAAG+GGG 0.530787 3:-83942925 MsG0380016472.01.T01:CDS
ATACTCCTGGTCTTATTGAA+GGG 0.535356 3:-83942926 MsG0380016472.01.T01:CDS
CATCTATGGTCTTGTCCAGA+AGG 0.535370 3:+83942765 None:intergenic
ACCACCCTGCAAACCATCAC+AGG 0.536483 3:+83943070 None:intergenic
TCATCATAAGGCAATCCATC+CGG 0.539414 3:+83942602 None:intergenic
TCCTTGACCATACTTGTGAT+GGG 0.544068 3:-83943179 MsG0380016472.01.T01:CDS
TGTTATGGTGTCGCGAGCAA+GGG 0.561068 3:-83942973 MsG0380016472.01.T01:CDS
TTTGGGAAAACTTAAGCAAG+AGG 0.562421 3:-83943477 MsG0380016472.01.T01:intron
ACAGGAAAGTATTACCTGAA+AGG 0.562436 3:+83943088 None:intergenic
TGGCGCTTGATATCATAAAA+CGG 0.566713 3:-83942887 MsG0380016472.01.T01:intron
CCCCATCACAAGTATGGTCA+AGG 0.568031 3:+83943178 None:intergenic
TTGAACATTATCGATACTCC+TGG 0.568301 3:-83942939 MsG0380016472.01.T01:CDS
TTCGATCAAGACAACAGGAA+TGG 0.570397 3:+83942094 None:intergenic
GCCCAGTTCTCTCCACCGGA+TGG 0.572612 3:-83942617 MsG0380016472.01.T01:CDS
AGCAGCATCCTTCTTTAAGG+AGG 0.587588 3:+83942529 None:intergenic
ACCATACTTGTGATGGGGAA+AGG 0.589914 3:-83943173 MsG0380016472.01.T01:CDS
TGTGTATCGAGTAGACAGCT+TGG 0.593621 3:-83942717 MsG0380016472.01.T01:CDS
GTGATTGTTTGGACTAGGAG+AGG 0.597809 3:+83941905 None:intergenic
ACATGCCCAGTTCTCTCCAC+CGG 0.601778 3:-83942621 MsG0380016472.01.T01:CDS
TTGTCTTGATCGAAAACAGT+GGG 0.615762 3:-83942085 MsG0380016472.01.T01:CDS
CTCAACAACAAGTTCGTGAG+TGG 0.619463 3:-83943550 MsG0380016472.01.T01:CDS
GTGATGGGGAAAGGTGGTGT+CGG 0.627121 3:-83943164 MsG0380016472.01.T01:CDS
TGGCAAAGGAATATGGAACA+AGG 0.632914 3:-83942660 MsG0380016472.01.T01:CDS
AACTGTGAACTCTATCATTG+GGG 0.637041 3:-83943132 MsG0380016472.01.T01:CDS
TAAAAGAACAACAACAATGG+TGG 0.644394 3:+83943717 None:intergenic
TCATAAGGCAATCCATCCGG+TGG 0.644476 3:+83942605 None:intergenic
CCTTGACCATACTTGTGATG+GGG 0.651438 3:-83943178 MsG0380016472.01.T01:CDS
TATCATTGGGGAAAGAGTGG+TGG 0.661038 3:-83943120 MsG0380016472.01.T01:CDS
ACTCCTGGTCTTATTGAAGG+GGG 0.667095 3:-83942924 MsG0380016472.01.T01:CDS
TCTTGATCGAAAACAGTGGG+AGG 0.675835 3:-83942082 MsG0380016472.01.T01:CDS
AGATAAAAGAACAACAACAA+TGG 0.685190 3:+83943714 None:intergenic
GTTGTCTTGATCGAAAACAG+TGG 0.698158 3:-83942086 MsG0380016472.01.T01:CDS
ATACTTGTGATGGGGAAAGG+TGG 0.702252 3:-83943170 MsG0380016472.01.T01:CDS
CTACTCGATACACATCTAAG+CGG 0.725484 3:+83942726 None:intergenic
GGACCAAATCCAAATCAGAG+AGG 0.745722 3:-83941827 MsG0380016472.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTACTTTATTTGTGAA+TGG - Chr3:83943236-83943255 MsG0380016472.01.T01:intron 15.0%
!!! AACAATTTTTCATGAAATTA+TGG - Chr3:83942127-83942146 MsG0380016472.01.T01:intron 15.0%
!!! ATATATAGTAATTTTCATCA+GGG - Chr3:83943184-83943203 MsG0380016472.01.T01:CDS 15.0%
!!! TATATATAGTAATTTTCATC+AGG - Chr3:83943183-83943202 MsG0380016472.01.T01:CDS 15.0%
!! ATTCAAAAATTGAAAGAGAA+AGG + Chr3:83941873-83941892 None:intergenic 20.0%
!! CAATACCAAAAAAAAAGAAA+AGG + Chr3:83942710-83942729 None:intergenic 20.0%
!! CTGTTACAAATTATAAAATC+AGG - Chr3:83942979-83942998 MsG0380016472.01.T01:CDS 20.0%
!!! AAATAGTTTTTTACAACACA+AGG + Chr3:83942510-83942529 None:intergenic 20.0%
!!! GCTAAAAGTTAAAACTTTTA+AGG - Chr3:83943078-83943097 MsG0380016472.01.T01:intron 20.0%
!!! TATTACTTCCTTTAAAAGTA+GGG - Chr3:83943279-83943298 MsG0380016472.01.T01:intron 20.0%
!!! TGAATCCTTTTCTTTTTTTT+TGG - Chr3:83942702-83942721 MsG0380016472.01.T01:CDS 20.0%
!!! TTATTACTTCCTTTAAAAGT+AGG - Chr3:83943278-83943297 MsG0380016472.01.T01:intron 20.0%
! AAAACTATCAGTTATAGCTT+TGG + Chr3:83942854-83942873 None:intergenic 25.0%
! ACTATAATTGTGGCAAAATA+AGG - Chr3:83942245-83942264 MsG0380016472.01.T01:intron 25.0%
! ACTATATATAATCAACCAAG+TGG + Chr3:83943173-83943192 None:intergenic 25.0%
! AGATAAAAGAACAACAACAA+TGG + Chr3:83941822-83941841 None:intergenic 25.0%
! ATATTGTAGTGAAACCTAAT+TGG + Chr3:83941902-83941921 None:intergenic 25.0%
! ATCAGATTAAGCAAGATAAA+CGG + Chr3:83943556-83943575 None:intergenic 25.0%
! ATCCTTAAAAAATACATCTC+AGG - Chr3:83943056-83943075 MsG0380016472.01.T01:intron 25.0%
! CAAAAATGAAACTGATGAAA+AGG - Chr3:83943479-83943498 MsG0380016472.01.T01:CDS 25.0%
!! AAAGCTATAACTGATAGTTT+TGG - Chr3:83942853-83942872 MsG0380016472.01.T01:intron 25.0%
!! TATAATTTGTAACAGAGCTT+CGG + Chr3:83942974-83942993 None:intergenic 25.0%
!! TTTTGAATTTCTCACCAATT+AGG - Chr3:83941885-83941904 MsG0380016472.01.T01:CDS 25.0%
!!! GAGATGTATTTTTTAAGGAT+AGG + Chr3:83943056-83943075 None:intergenic 25.0%
AAACAACACATTGTGATAGT+TGG + Chr3:83942313-83942332 None:intergenic 30.0%
AAATCCAAATACTTCGAATC+CGG + Chr3:83943106-83943125 None:intergenic 30.0%
AAGGAAGCTACAAAGAAAAA+GGG + Chr3:83942752-83942771 None:intergenic 30.0%
AATGAAACTGATGAAAAGGT+TGG - Chr3:83943483-83943502 MsG0380016472.01.T01:CDS 30.0%
ATGCAATTTCTGTGATTGTT+TGG + Chr3:83943642-83943661 None:intergenic 30.0%
ATGGAATTAGTGGAACATTA+TGG - Chr3:83941957-83941976 MsG0380016472.01.T01:intron 30.0%
ATTGAAAGAGAAAGGAAAAG+TGG + Chr3:83941865-83941884 None:intergenic 30.0%
GAGTGCAATAATAATTCAAG+AGG + Chr3:83942102-83942121 None:intergenic 30.0%
GATAAAAGAGGAATAAGGAA+AGG + Chr3:83943530-83943549 None:intergenic 30.0%
GTTGACAAGAATTTGATTGA+CGG - Chr3:83943685-83943704 MsG0380016472.01.T01:intron 30.0%
TAAAAGAACAACAACAATGG+TGG + Chr3:83941819-83941838 None:intergenic 30.0%
TACCACTATAATTGAAGTCA+CGG + Chr3:83942161-83942180 None:intergenic 30.0%
TCAGATTAAGCAAGATAAAC+GGG + Chr3:83943555-83943574 None:intergenic 30.0%
TGATTGAGAAAATATGTGCA+TGG - Chr3:83943572-83943591 MsG0380016472.01.T01:intron 30.0%
TTTGAGAAGAACTCATCATA+AGG + Chr3:83942946-83942965 None:intergenic 30.0%
! CTATTTTCATCTTGAGTAGT+CGG - Chr3:83942524-83942543 MsG0380016472.01.T01:intron 30.0%
! TAGTAATTTTCATCAGGGTT+AGG - Chr3:83943189-83943208 MsG0380016472.01.T01:CDS 30.0%
!! TTTTGTTGTCGTTCTGTTTA+TGG - Chr3:83941938-83941957 MsG0380016472.01.T01:intron 30.0%
!!! AGCCTGAGATGTATTTTTTA+AGG + Chr3:83943061-83943080 None:intergenic 30.0%
!!! AGTATTTGGATTTTAGTTCC+TGG - Chr3:83943113-83943132 MsG0380016472.01.T01:CDS 30.0%
!!! AGTTAAAACTTTTAAGGCTC+CGG - Chr3:83943084-83943103 MsG0380016472.01.T01:CDS 30.0%
!!! ATAACTGATAGTTTTGGCAA+AGG - Chr3:83942859-83942878 MsG0380016472.01.T01:intron 30.0%
!!! ATAGTTTTGGCAAAGGAATA+TGG - Chr3:83942866-83942885 MsG0380016472.01.T01:intron 30.0%
!!! TGTGTTGTTTCTTTTGACAT+AGG - Chr3:83942323-83942342 MsG0380016472.01.T01:intron 30.0%
AAAAGAAAAGGATTCACACG+TGG + Chr3:83942698-83942717 None:intergenic 35.0%
AACAAAAACAAGAGAGAACC+TGG + Chr3:83943311-83943330 None:intergenic 35.0%
AACCAATGTATACCCATTCA+AGG + Chr3:83943148-83943167 None:intergenic 35.0%
AACTGTGAACTCTATCATTG+GGG - Chr3:83942401-83942420 MsG0380016472.01.T01:intron 35.0%
ACCAACCATGGTTTAAATCA+AGG - Chr3:83942212-83942231 MsG0380016472.01.T01:intron 35.0%
ACCTGTAAAGCAAATATGAC+AGG + Chr3:83943745-83943764 None:intergenic 35.0%
ATCCTTGAATGGGTATACAT+TGG - Chr3:83943143-83943162 MsG0380016472.01.T01:CDS 35.0%
CAAATCAGAGAGGAAAACTA+TGG - Chr3:83943716-83943735 MsG0380016472.01.T01:five_prime_UTR 35.0%
CAACTGTGAACTCTATCATT+GGG - Chr3:83942400-83942419 MsG0380016472.01.T01:intron 35.0%
CACATAAAGCAGAACATCTA+TGG + Chr3:83942785-83942804 None:intergenic 35.0%
CATAGATGTTCTGCTTTATG+TGG - Chr3:83942783-83942802 MsG0380016472.01.T01:intron 35.0%
CCAACCATGGTTTAAATCAA+GGG - Chr3:83942213-83942232 MsG0380016472.01.T01:intron 35.0%
CGTTCTGTTTATGGAATTAG+TGG - Chr3:83941947-83941966 MsG0380016472.01.T01:intron 35.0%
GAAGGAAGCTACAAAGAAAA+AGG + Chr3:83942753-83942772 None:intergenic 35.0%
TAAAACGGTATGCTTATGTC+TGG - Chr3:83942661-83942680 MsG0380016472.01.T01:CDS 35.0%
TCAACTGTGAACTCTATCAT+TGG - Chr3:83942399-83942418 MsG0380016472.01.T01:intron 35.0%
TCCTGTCATATTTGCTTTAC+AGG - Chr3:83943741-83943760 MsG0380016472.01.T01:five_prime_UTR 35.0%
TGGATCTTTGATCCTTGAAT+GGG - Chr3:83943133-83943152 MsG0380016472.01.T01:CDS 35.0%
TGGCGCTTGATATCATAAAA+CGG - Chr3:83942646-83942665 MsG0380016472.01.T01:CDS 35.0%
TTAAAAGTAGGGTTATGTCC+AGG - Chr3:83943290-83943309 MsG0380016472.01.T01:intron 35.0%
TTGAACATTATCGATACTCC+TGG - Chr3:83942594-83942613 MsG0380016472.01.T01:CDS 35.0%
TTGAATGGGTATACATTGGT+TGG - Chr3:83943147-83943166 MsG0380016472.01.T01:CDS 35.0%
TTGTCTTGATCGAAAACAGT+GGG - Chr3:83943448-83943467 MsG0380016472.01.T01:intron 35.0%
TTTATCTCAAACACTTCCTC+AGG - Chr3:83941835-83941854 MsG0380016472.01.T01:CDS 35.0%
TTTCTGTGATTGTTTGGACT+AGG + Chr3:83943636-83943655 None:intergenic 35.0%
TTTGGGAAAACTTAAGCAAG+AGG - Chr3:83942056-83942075 MsG0380016472.01.T01:CDS 35.0%
! AACCAAGTTGCTTGAACTTT+TGG - Chr3:83942038-83942057 MsG0380016472.01.T01:intron 35.0%
! ACCAAGTTGCTTGAACTTTT+GGG - Chr3:83942039-83942058 MsG0380016472.01.T01:intron 35.0%
! ATTTTGCGTAATACCAACCA+TGG - Chr3:83942200-83942219 MsG0380016472.01.T01:intron 35.0%
! CATAGTTTTCCTCTCTGATT+TGG + Chr3:83943718-83943737 None:intergenic 35.0%
! TTTTCTTTGTAGCTTCCTTC+TGG - Chr3:83942753-83942772 MsG0380016472.01.T01:CDS 35.0%
! TTTTGCTTTCTCTTAACCCT+AGG - Chr3:83943410-83943429 MsG0380016472.01.T01:intron 35.0%
!! ACAGGAAAGTATTACCTGAA+AGG + Chr3:83942448-83942467 None:intergenic 35.0%
!! ATACTCCTGGTCTTATTGAA+GGG - Chr3:83942607-83942626 MsG0380016472.01.T01:CDS 35.0%
!! CAGGAAAGTATTACCTGAAA+GGG + Chr3:83942447-83942466 None:intergenic 35.0%
!! GGACATAACCCTACTTTTAA+AGG + Chr3:83943290-83943309 None:intergenic 35.0%
!! TTTCCTCTCTGATTTGGATT+TGG + Chr3:83943712-83943731 None:intergenic 35.0%
AAGGAAAAGTGGAATACCTG+AGG + Chr3:83941854-83941873 None:intergenic 40.0%
ATGGTTTAAATCAAGGGTCG+CGG - Chr3:83942219-83942238 MsG0380016472.01.T01:intron 40.0%
CAGGTAATACTTTCCTGTGA+TGG - Chr3:83942450-83942469 MsG0380016472.01.T01:intron 40.0%
CATTCAAGGATCAAAGATCC+AGG + Chr3:83943134-83943153 None:intergenic 40.0%
CCCTTGATTTAAACCATGGT+TGG + Chr3:83942216-83942235 None:intergenic 40.0%
CTACTCGATACACATCTAAG+CGG + Chr3:83942810-83942829 None:intergenic 40.0%
CTGGATCTTTGATCCTTGAA+TGG - Chr3:83943132-83943151 MsG0380016472.01.T01:CDS 40.0%
GAAAATATGTGCATGGTGAC+AGG - Chr3:83943579-83943598 MsG0380016472.01.T01:intron 40.0%
GACCGTGACTTCAATTATAG+TGG - Chr3:83942156-83942175 MsG0380016472.01.T01:intron 40.0%
GAGGAATAAGGAAAGGTGAA+TGG + Chr3:83943523-83943542 None:intergenic 40.0%
GGCTAATGCTCTTGAAATTG+TGG - Chr3:83942266-83942285 MsG0380016472.01.T01:intron 40.0%
GGGCTGATAAAAGAGGAATA+AGG + Chr3:83943535-83943554 None:intergenic 40.0%
GTCGCGGTTAACTATAATTG+TGG - Chr3:83942235-83942254 MsG0380016472.01.T01:intron 40.0%
GTTGTCTTGATCGAAAACAG+TGG - Chr3:83943447-83943466 MsG0380016472.01.T01:intron 40.0%
TCATCATAAGGCAATCCATC+CGG + Chr3:83942934-83942953 None:intergenic 40.0%
TCCCAAAAGTTCAAGCAACT+TGG + Chr3:83942043-83942062 None:intergenic 40.0%
TCCTTGACCATACTTGTGAT+GGG - Chr3:83942354-83942373 MsG0380016472.01.T01:intron 40.0%
TGGCAAAGGAATATGGAACA+AGG - Chr3:83942873-83942892 MsG0380016472.01.T01:intron 40.0%
TTCATCTTGAGTAGTCGGAA+GGG - Chr3:83942529-83942548 MsG0380016472.01.T01:CDS 40.0%
TTCGATCAAGACAACAGGAA+TGG + Chr3:83943442-83943461 None:intergenic 40.0%
TTCTTCCAAATGGGATTGCT+TGG - Chr3:83943602-83943621 MsG0380016472.01.T01:intron 40.0%
TTTCATCTTGAGTAGTCGGA+AGG - Chr3:83942528-83942547 MsG0380016472.01.T01:CDS 40.0%
! CATTGTGATAGTTGGTACCA+AGG + Chr3:83942305-83942324 None:intergenic 40.0%
! CTGTTTTCGATCAAGACAAC+AGG + Chr3:83943447-83943466 None:intergenic 40.0%
!! GATAAACGGGCTGATAAAAG+AGG + Chr3:83943542-83943561 None:intergenic 40.0%
!! GATACTCCTGGTCTTATTGA+AGG - Chr3:83942606-83942625 MsG0380016472.01.T01:CDS 40.0%
!! TACTCCTGGTCTTATTGAAG+GGG - Chr3:83942608-83942627 MsG0380016472.01.T01:CDS 40.0%
ACCTTTCCCCATCACAAGTA+TGG + Chr3:83942364-83942383 None:intergenic 45.0%
AGGGGGTTACATCAGTGATA+TGG - Chr3:83942626-83942645 MsG0380016472.01.T01:CDS 45.0%
ATCAGGTGCCTCCTTAAAGA+AGG - Chr3:83942996-83943015 MsG0380016472.01.T01:intron 45.0%
CCTTGACCATACTTGTGATG+GGG - Chr3:83942355-83942374 MsG0380016472.01.T01:intron 45.0%
CTCAACAACAAGTTCGTGAG+TGG - Chr3:83941983-83942002 MsG0380016472.01.T01:intron 45.0%
CTCCTTGACCATACTTGTGA+TGG - Chr3:83942353-83942372 MsG0380016472.01.T01:intron 45.0%
CTCTATCATTGGGGAAAGAG+TGG - Chr3:83942410-83942429 MsG0380016472.01.T01:intron 45.0%
CTGAGCAGCATCCTTCTTTA+AGG + Chr3:83943010-83943029 None:intergenic 45.0%
CTTAAAGAAGGATGCTGCTC+AGG - Chr3:83943008-83943027 MsG0380016472.01.T01:intron 45.0%
GCGACCCTTGATTTAAACCA+TGG + Chr3:83942220-83942239 None:intergenic 45.0%
GGAATCCAAGCAATCCCATT+TGG + Chr3:83943610-83943629 None:intergenic 45.0%
GGACCAAATCCAAATCAGAG+AGG - Chr3:83943706-83943725 MsG0380016472.01.T01:five_prime_UTR 45.0%
GGTGACAGGTTCTTCCAAAT+GGG - Chr3:83943593-83943612 MsG0380016472.01.T01:intron 45.0%
TAACCCCCTTCAATAAGACC+AGG + Chr3:83942615-83942634 None:intergenic 45.0%
TATCATTGGGGAAAGAGTGG+TGG - Chr3:83942413-83942432 MsG0380016472.01.T01:intron 45.0%
TCTTGATCGAAAACAGTGGG+AGG - Chr3:83943451-83943470 MsG0380016472.01.T01:intron 45.0%
TGGTGACAGGTTCTTCCAAA+TGG - Chr3:83943592-83943611 MsG0380016472.01.T01:intron 45.0%
TGTGTATCGAGTAGACAGCT+TGG - Chr3:83942816-83942835 MsG0380016472.01.T01:intron 45.0%
! ACCATACTTGTGATGGGGAA+AGG - Chr3:83942360-83942379 MsG0380016472.01.T01:intron 45.0%
! ACTTTCCTGTGATGGTTTGC+AGG - Chr3:83942458-83942477 MsG0380016472.01.T01:intron 45.0%
! AGCAGCATCCTTCTTTAAGG+AGG + Chr3:83943007-83943026 None:intergenic 45.0%
! ATACTTGTGATGGGGAAAGG+TGG - Chr3:83942363-83942382 MsG0380016472.01.T01:intron 45.0%
! CTTTCCTGTGATGGTTTGCA+GGG - Chr3:83942459-83942478 MsG0380016472.01.T01:intron 45.0%
! GTATACATTGGTTGGCCACT+TGG - Chr3:83943155-83943174 MsG0380016472.01.T01:CDS 45.0%
! GTGATTGTTTGGACTAGGAG+AGG + Chr3:83943631-83943650 None:intergenic 45.0%
! GTGGCTGCAATTTAAAGCCT+TGG - Chr3:83942285-83942304 MsG0380016472.01.T01:intron 45.0%
!! ACTCCTGGTCTTATTGAAGG+GGG - Chr3:83942609-83942628 MsG0380016472.01.T01:CDS 45.0%
!! CATCTATGGTCTTGTCCAGA+AGG + Chr3:83942771-83942790 None:intergenic 45.0%
AACAGGAATGGCAGAAGCCT+AGG + Chr3:83943430-83943449 None:intergenic 50.0%
ACAGGAATGGCAGAAGCCTA+GGG + Chr3:83943429-83943448 None:intergenic 50.0%
CAACAAGTTCGTGAGTGGTC+TGG - Chr3:83941988-83942007 MsG0380016472.01.T01:intron 50.0%
CCCCATCACAAGTATGGTCA+AGG + Chr3:83942358-83942377 None:intergenic 50.0%
TCATAAGGCAATCCATCCGG+TGG + Chr3:83942931-83942950 None:intergenic 50.0%
! GGCTCCGGATTCGAAGTATT+TGG - Chr3:83943099-83943118 MsG0380016472.01.T01:CDS 50.0%
!! AGCAACTTGGTTTGCGTAGC+AGG + Chr3:83942030-83942049 None:intergenic 50.0%
!! TGTTATGGTGTCGCGAGCAA+GGG - Chr3:83942560-83942579 MsG0380016472.01.T01:CDS 50.0%
ACATGCCCAGTTCTCTCCAC+CGG - Chr3:83942912-83942931 MsG0380016472.01.T01:CDS 55.0%
ACCACCCTGCAAACCATCAC+AGG + Chr3:83942466-83942485 None:intergenic 55.0%
ATCCATCCGGTGGAGAGAAC+TGG + Chr3:83942921-83942940 None:intergenic 55.0%
CGCGACACCATAACAGGTCT+TGG + Chr3:83942555-83942574 None:intergenic 55.0%
CTTGCTCGCGACACCATAAC+AGG + Chr3:83942561-83942580 None:intergenic 55.0%
GGAAGGGCCAAGACCTGTTA+TGG - Chr3:83942545-83942564 MsG0380016472.01.T01:CDS 55.0%
TCCATCCGGTGGAGAGAACT+GGG + Chr3:83942920-83942939 None:intergenic 55.0%
! GGTGGCGATTAGTCCCTTTC+AGG - Chr3:83942431-83942450 MsG0380016472.01.T01:intron 55.0%
! GTGATGGGGAAAGGTGGTGT+CGG - Chr3:83942369-83942388 MsG0380016472.01.T01:intron 55.0%
! TCCTGTGATGGTTTGCAGGG+TGG - Chr3:83942462-83942481 MsG0380016472.01.T01:intron 55.0%
! TGTGATGGTTTGCAGGGTGG+TGG - Chr3:83942465-83942484 MsG0380016472.01.T01:intron 55.0%
!! CTGTTATGGTGTCGCGAGCA+AGG - Chr3:83942559-83942578 MsG0380016472.01.T01:CDS 55.0%
GCCCAGTTCTCTCCACCGGA+TGG - Chr3:83942916-83942935 MsG0380016472.01.T01:CDS 65.0%
!! ATGGTGTCGCGAGCAAGGGC+TGG - Chr3:83942564-83942583 MsG0380016472.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 83941781 83943774 83941781 ID=MsG0380016472.01;Name=MsG0380016472.01
Chr3 mRNA 83941781 83943774 83941781 ID=MsG0380016472.01.T01;Parent=MsG0380016472.01;Name=MsG0380016472.01.T01;_AED=0.34;_eAED=0.34;_QI=85|0.83|0.57|1|0.83|0.71|7|0|284
Chr3 exon 83941781 83941954 83941781 ID=MsG0380016472.01.T01:exon:14199;Parent=MsG0380016472.01.T01
Chr3 exon 83942055 83942123 83942055 ID=MsG0380016472.01.T01:exon:14198;Parent=MsG0380016472.01.T01
Chr3 exon 83942526 83942790 83942526 ID=MsG0380016472.01.T01:exon:14197;Parent=MsG0380016472.01.T01
Chr3 exon 83942888 83943005 83942888 ID=MsG0380016472.01.T01:exon:14196;Parent=MsG0380016472.01.T01
Chr3 exon 83943084 83943210 83943084 ID=MsG0380016472.01.T01:exon:14195;Parent=MsG0380016472.01.T01
Chr3 exon 83943478 83943588 83943478 ID=MsG0380016472.01.T01:exon:14194;Parent=MsG0380016472.01.T01
Chr3 exon 83943699 83943774 83943699 ID=MsG0380016472.01.T01:exon:14193;Parent=MsG0380016472.01.T01
Chr3 five_prime_UTR 83943699 83943774 83943699 ID=MsG0380016472.01.T01:five_prime_utr;Parent=MsG0380016472.01.T01
Chr3 five_prime_UTR 83943580 83943588 83943580 ID=MsG0380016472.01.T01:five_prime_utr;Parent=MsG0380016472.01.T01
Chr3 CDS 83943478 83943579 83943478 ID=MsG0380016472.01.T01:cds;Parent=MsG0380016472.01.T01
Chr3 CDS 83943084 83943210 83943084 ID=MsG0380016472.01.T01:cds;Parent=MsG0380016472.01.T01
Chr3 CDS 83942888 83943005 83942888 ID=MsG0380016472.01.T01:cds;Parent=MsG0380016472.01.T01
Chr3 CDS 83942526 83942790 83942526 ID=MsG0380016472.01.T01:cds;Parent=MsG0380016472.01.T01
Chr3 CDS 83942055 83942123 83942055 ID=MsG0380016472.01.T01:cds;Parent=MsG0380016472.01.T01
Chr3 CDS 83941781 83941954 83941781 ID=MsG0380016472.01.T01:cds;Parent=MsG0380016472.01.T01
Gene Sequence

>MsG0380016472.01.T01

ATGGCATCTCAACAACAAGTTCGTGAGTGGTCTGGAATCAATACGTTTGCTCCTGCTACGCAAACCAAGTTGCTTGAACTTTTGGGAAAACTTAAGCAAGAGGATGTGAACTCCTTGACCATACTTGTGATGGGGAAAGGTGGTGTCGGAAAGTCTTCAACTGTGAACTCTATCATTGGGGAAAGAGTGGTGGCGATTAGTCCCTTTCAGGTAATACTTTCCTGTGATGGGCCAAGACCTGTTATGGTGTCGCGAGCAAGGGCTGGTTTTACATTGAACATTATCGATACTCCTGGTCTTATTGAAGGGGGTTACATCAGTGATATGGCGCTTGATATCATAAAACGCTTCCTTCTGGACAAGACCATAGATGTTCTGCTTTATGTGGACCGCTTAGATGTGTATCGAGTAGACAGCTTGGATAAGCTAGTCGCCAAAGCTATAACTGATAGTTTTGGCAAAGGAATATGGAACAAGGCTATAGTAGCACTCACACATGCCCAGTTCTCTCCACCGGATGGATTGCCTTATGATGAGTTCTTCTCAAAAAGATCCGAAGCTCTGTTACAAATTATAAAATCAGGTGCCTCCTTAAAGAAGGATGCTGCTCAGGCTTCTGCCATTCCTGTTGTCTTGATCGAAAACAGTGGGAGGTGCAACAAAAATGAAACTGATGAAAAGGTTCTTCCAAATGGGATTGCTTGGATTCCTCTCCTAGTCCAAACAATCACAGAAATTGCATTGAACAAAAGTGAGTCTATTTTTGTTGACAAGAATTTGATTGACGGACCAAATCCAAATCAGAGAGGAAAACTATGGATTCCTGTCATATTTGCTTTACAGGTAAGCTTTTGA
Protein sequence

>MsG0380016472.01.T01

MASQQQVREWSGINTFAPATQTKLLELLGKLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVAISPFQVILSCDGPRPVMVSRARAGFTLNIIDTPGLIEGGYISDMALDIIKRFLLDKTIDVLLYVDRLDVYRVDSLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQIIKSGASLKKDAAQASAIPVVLIENSGRCNKNETDEKVLPNGIAWIPLLVQTITEIALNKSESIFVDKNLIDGPNPNQRGKLWIPVIFALQVSF*