AlfalfaGEDB | MsG0380016649.01

M. sativa cultivar ZhongmuNo.1 / MsG0380016649.01

KEGG: -
GO: GO:0003676
PFAM: PF00076

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016649.01.T01	XP_003602355.1	92.4	250	16	2	1	247	1	250	4.51E-159	451

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016649.01.T01	Q9I8B3	63.636	88	32	0	21	108	7	94	9.65E-33	122

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016649.01.T01	G7J8A8	92.400	250	16	2	1	247	1	250	2.15e-159	451

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0380016649.01	MsG0380018007.01	0.800483	1.411128e-48	6.577957e-46
MsG0380016649.01	MsG0880043261.01	0.829440	5.142253e-55	5.263170e-52
MsG0380016649.01	MsG0880043989.01	0.809261	2.064603e-50	1.206516e-47
MsG0380016649.01	MsG0880045804.01	0.810350	1.204082e-50	7.241148e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016649.01.T01	MTR_3g092490	92.400	250	16	2	1	247	1	250	5.46e-163	451
MsG0380016649.01.T01	MTR_3g092490	92.032	251	16	3	1	247	1	251	4.21e-161	446
MsG0380016649.01.T01	MTR_3g092490	87.037	162	20	1	1	161	1	162	9.89e-103	296
MsG0380016649.01.T01	MTR_8g024520	52.874	174	75	5	1	170	1	171	9.33e-50	164
MsG0380016649.01.T01	MTR_8g024520	52.874	174	75	5	1	170	1	171	9.85e-50	164
MsG0380016649.01.T01	MTR_3g116130	52.632	152	62	3	20	161	24	175	3.38e-42	145
MsG0380016649.01.T01	MTR_3g116130	51.205	166	66	5	20	175	24	184	1.24e-41	146
MsG0380016649.01.T01	MTR_4g035310	49.664	149	64	2	10	147	1	149	1.49e-41	143
MsG0380016649.01.T01	MTR_4g035310	49.664	149	64	2	10	147	1	149	1.68e-41	143
MsG0380016649.01.T01	MTR_5g064120	75.309	81	20	0	20	100	11	91	2.98e-41	142
MsG0380016649.01.T01	MTR_7g117495	64.130	92	33	0	9	100	2	93	6.38e-38	133
MsG0380016649.01.T01	MTR_7g117495	64.130	92	33	0	9	100	2	93	6.58e-38	133
MsG0380016649.01.T01	MTR_4g088010	48.750	80	41	0	21	100	72	151	1.22e-18	84.0
MsG0380016649.01.T01	MTR_2g026180	40.659	91	53	1	26	116	5	94	1.76e-18	84.3
MsG0380016649.01.T01	MTR_8g463890	46.250	80	43	0	21	100	69	148	4.67e-18	83.2
MsG0380016649.01.T01	MTR_5g097580	39.535	86	51	1	26	111	7	91	1.68e-16	78.6
MsG0380016649.01.T01	MTR_7g088140	43.529	85	48	0	20	104	122	206	1.81e-16	78.6
MsG0380016649.01.T01	MTR_5g097580	39.535	86	51	1	26	111	7	91	2.01e-16	78.6
MsG0380016649.01.T01	MTR_7g088140	43.529	85	48	0	20	104	122	206	2.34e-16	78.2
MsG0380016649.01.T01	MTR_4g070190	44.444	81	43	2	21	100	5	84	4.30e-16	73.9
MsG0380016649.01.T01	MTR_3g055990	36.957	92	57	1	21	112	2	92	1.09e-15	76.3
MsG0380016649.01.T01	MTR_3g055990	36.957	92	57	1	21	112	2	92	1.26e-15	76.3
MsG0380016649.01.T01	MTR_4g070080	44.578	83	40	3	21	100	3	82	1.81e-15	71.2
MsG0380016649.01.T01	MTR_4g070080	44.578	83	40	3	21	100	3	82	4.87e-15	70.9
MsG0380016649.01.T01	MTR_1g073690	35.227	88	56	1	21	108	2	88	5.17e-15	74.3
MsG0380016649.01.T01	MTR_7g013730	38.095	84	51	1	26	108	41	124	5.59e-15	72.8
MsG0380016649.01.T01	MTR_4g070140	46.053	76	40	1	26	100	9	84	1.28e-14	70.5
MsG0380016649.01.T01	MTR_4g109540	38.554	83	46	2	25	104	42	122	2.62e-14	70.9
MsG0380016649.01.T01	MTR_5g088220	37.363	91	57	0	10	100	150	240	3.80e-14	71.6
MsG0380016649.01.T01	MTR_7g013740	40.741	81	47	1	25	104	40	120	4.64e-14	67.8
MsG0380016649.01.T01	MTR_7g105260	45.679	81	41	2	26	105	33	111	6.36e-14	67.4
MsG0380016649.01.T01	MTR_3g103420	42.500	80	45	1	21	100	6	84	1.36e-13	69.7
MsG0380016649.01.T01	MTR_3g084040	42.029	69	40	0	25	93	36	104	1.96e-13	66.2
MsG0380016649.01.T01	MTR_4g063560	39.241	79	47	1	25	102	33	111	4.02e-13	64.3
MsG0380016649.01.T01	MTR_3g025880	39.759	83	45	2	25	104	44	124	4.81e-13	68.6
MsG0380016649.01.T01	MTR_3g084040	47.273	55	29	0	25	79	36	90	7.79e-13	63.5
MsG0380016649.01.T01	MTR_3g080130	35.802	81	51	1	25	104	36	116	1.68e-12	63.5
MsG0380016649.01.T01	MTR_4g109540	35.165	91	46	3	25	104	42	130	6.99e-12	64.3
MsG0380016649.01.T01	MTR_3g014000	33.696	92	49	2	27	110	36	123	8.68e-12	61.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016649.01.T01	AT2G46780	49.741	193	73	8	1	175	1	187	6.92e-46	156
MsG0380016649.01.T01	AT2G46780	49.741	193	73	8	1	175	1	187	6.92e-46	156
MsG0380016649.01.T01	AT1G20880	75.309	81	20	0	20	100	19	99	1.69e-41	143
MsG0380016649.01.T01	AT1G20880	75.309	81	20	0	20	100	19	99	1.69e-41	143
MsG0380016649.01.T01	AT1G20880	75.309	81	20	0	20	100	19	99	1.69e-41	143
MsG0380016649.01.T01	AT1G22330	65.686	102	33	2	20	119	12	113	1.94e-41	143
MsG0380016649.01.T01	AT1G78260	71.605	81	23	0	20	100	12	92	2.19e-39	138
MsG0380016649.01.T01	AT1G76460	62.376	101	37	1	20	119	19	119	2.37e-39	138
MsG0380016649.01.T01	AT1G78260	71.605	81	23	0	20	100	12	92	7.02e-39	136
MsG0380016649.01.T01	AT1G33470	71.250	80	23	0	21	100	3	82	6.28e-38	133
MsG0380016649.01.T01	AT1G33470	71.250	80	23	0	21	100	3	82	8.17e-38	133
MsG0380016649.01.T01	AT1G33470	71.250	80	23	0	21	100	3	82	8.59e-38	132
MsG0380016649.01.T01	AT1G22910	64.835	91	29	1	20	107	8	98	1.32e-37	132
MsG0380016649.01.T01	AT1G22910	64.835	91	29	1	20	107	8	98	2.50e-37	132
MsG0380016649.01.T01	AT1G22910	64.835	91	29	1	20	107	8	98	7.31e-37	133
MsG0380016649.01.T01	AT5G11412	64.198	81	29	0	21	101	48	128	8.09e-34	120
MsG0380016649.01.T01	AT3G54770	52.991	117	47	3	9	125	1	109	2.04e-32	119
MsG0380016649.01.T01	AT3G54770	52.991	117	47	3	9	125	1	109	2.24e-32	119
MsG0380016649.01.T01	AT5G53680	55.556	81	36	0	21	101	9	89	1.66e-28	106
MsG0380016649.01.T01	AT3G06970	44.615	130	52	3	21	144	8	123	4.24e-28	109
MsG0380016649.01.T01	AT5G53720	54.545	77	35	0	25	101	9	85	2.26e-24	94.0
MsG0380016649.01.T01	AT3G54770	53.750	80	31	1	44	123	4	77	2.80e-21	89.0
MsG0380016649.01.T01	AT2G22090	41.071	112	66	0	2	113	81	192	1.29e-18	84.0
MsG0380016649.01.T01	AT2G22090	41.071	112	66	0	2	113	81	192	1.32e-18	84.0
MsG0380016649.01.T01	AT3G07810	42.424	99	52	3	26	123	7	101	2.86e-18	84.0
MsG0380016649.01.T01	AT3G07810	42.424	99	52	3	26	123	7	101	3.40e-18	83.6
MsG0380016649.01.T01	AT5G47620	39.130	92	49	2	26	110	7	98	9.23e-18	82.0
MsG0380016649.01.T01	AT5G47620	39.130	92	49	2	26	110	7	98	9.23e-18	82.0
MsG0380016649.01.T01	AT5G47620	39.130	92	49	2	26	110	7	98	9.23e-18	82.0
MsG0380016649.01.T01	AT3G15010	47.500	80	42	0	21	100	71	150	9.99e-18	82.0
MsG0380016649.01.T01	AT3G15010	47.500	80	42	0	21	100	71	150	9.99e-18	82.0
MsG0380016649.01.T01	AT4G39260	44.304	79	43	1	26	103	7	85	1.31e-17	75.9
MsG0380016649.01.T01	AT4G39260	46.053	76	40	1	26	100	7	82	2.79e-17	75.9
MsG0380016649.01.T01	AT5G47620	54.545	55	25	0	25	79	6	60	4.11e-17	80.5
MsG0380016649.01.T01	AT4G26650	37.931	87	53	1	26	112	16	101	5.15e-17	80.1
MsG0380016649.01.T01	AT4G26650	37.931	87	53	1	26	112	13	98	5.26e-17	80.1
MsG0380016649.01.T01	AT3G23830	42.169	83	47	1	25	106	35	117	7.19e-17	75.1
MsG0380016649.01.T01	AT3G23830	42.169	83	47	1	25	106	35	117	7.19e-17	75.1
MsG0380016649.01.T01	AT4G39260	46.053	76	40	1	26	100	7	82	7.67e-17	75.9
MsG0380016649.01.T01	AT4G39260	48.387	62	32	0	26	87	7	68	3.33e-16	72.4
MsG0380016649.01.T01	AT2G21660	44.578	83	44	2	19	100	3	84	4.67e-16	73.6
MsG0380016649.01.T01	AT5G55550	34.286	105	66	2	21	125	2	103	5.42e-16	77.0
MsG0380016649.01.T01	AT5G55550	34.286	105	66	2	21	125	2	103	5.42e-16	77.0
MsG0380016649.01.T01	AT5G55550	34.286	105	66	2	21	125	2	103	5.42e-16	77.0
MsG0380016649.01.T01	AT5G55550	34.286	105	66	2	21	125	2	103	5.42e-16	77.0
MsG0380016649.01.T01	AT5G55550	34.286	105	66	2	21	125	2	103	5.42e-16	77.0
MsG0380016649.01.T01	AT4G13850	41.975	81	46	1	25	104	35	115	6.09e-16	72.4
MsG0380016649.01.T01	AT2G21660	44.578	83	44	2	19	100	3	84	6.71e-16	73.6
MsG0380016649.01.T01	AT5G55550	34.286	105	66	2	21	125	2	103	6.98e-16	77.0
MsG0380016649.01.T01	AT5G55550	34.286	105	66	2	21	125	2	103	6.98e-16	77.0
MsG0380016649.01.T01	AT5G55550	34.286	105	66	2	21	125	2	103	6.98e-16	77.0
MsG0380016649.01.T01	AT5G55550	34.286	105	66	2	21	125	2	103	6.98e-16	77.0
MsG0380016649.01.T01	AT4G13850	41.975	81	46	1	25	104	35	115	7.76e-16	72.8
MsG0380016649.01.T01	AT4G13850	41.975	81	46	1	25	104	35	115	9.52e-16	72.8
MsG0380016649.01.T01	AT4G13850	41.975	81	46	1	25	104	35	115	1.06e-15	72.8
MsG0380016649.01.T01	AT2G41060	39.796	98	56	1	21	115	124	221	1.19e-15	76.3
MsG0380016649.01.T01	AT2G41060	39.796	98	56	1	21	115	124	221	1.19e-15	76.3
MsG0380016649.01.T01	AT2G41060	39.796	98	56	1	21	115	124	221	1.19e-15	76.3
MsG0380016649.01.T01	AT3G56860	41.667	84	49	0	21	104	136	219	1.85e-15	75.5
MsG0380016649.01.T01	AT3G56860	41.667	84	49	0	21	104	136	219	1.85e-15	75.5
MsG0380016649.01.T01	AT3G56860	41.667	84	49	0	21	104	136	219	1.85e-15	75.5
MsG0380016649.01.T01	AT3G56860	41.667	84	49	0	21	104	136	219	1.85e-15	75.5
MsG0380016649.01.T01	AT3G56860	41.667	84	49	0	21	104	136	219	1.85e-15	75.5
MsG0380016649.01.T01	AT3G56860	41.667	84	49	0	21	104	136	219	1.85e-15	75.5
MsG0380016649.01.T01	AT3G56860	41.667	84	49	0	21	104	136	219	1.85e-15	75.5
MsG0380016649.01.T01	AT3G56860	41.667	84	49	0	21	104	136	219	1.85e-15	75.5
MsG0380016649.01.T01	AT3G56860	41.667	84	49	0	21	104	136	219	1.85e-15	75.5
MsG0380016649.01.T01	AT3G56860	41.667	84	49	0	21	104	136	219	1.85e-15	75.5
MsG0380016649.01.T01	AT3G56860	41.667	84	49	0	21	104	136	219	1.85e-15	75.5
MsG0380016649.01.T01	AT4G14300	33.663	101	66	1	21	121	2	101	3.39e-15	74.7
MsG0380016649.01.T01	AT4G14300	33.663	101	66	1	21	121	2	101	3.39e-15	74.7
MsG0380016649.01.T01	AT2G19380	41.667	84	49	0	21	104	404	487	8.37e-15	73.9
MsG0380016649.01.T01	AT5G55550	38.356	73	44	1	21	93	2	73	1.01e-14	73.6
MsG0380016649.01.T01	AT5G55550	38.356	73	44	1	21	93	2	73	1.12e-14	73.6
MsG0380016649.01.T01	AT2G33410	33.000	100	66	1	21	120	2	100	1.98e-14	72.4
MsG0380016649.01.T01	AT2G22100	40.260	77	46	0	21	97	159	235	7.48e-14	70.9
MsG0380016649.01.T01	AT1G17640	41.667	72	41	1	26	97	67	137	7.91e-14	70.5
MsG0380016649.01.T01	AT1G17640	41.667	72	41	1	26	97	67	137	7.91e-14	70.5
MsG0380016649.01.T01	AT1G17640	41.667	72	41	1	26	97	67	137	7.91e-14	70.5
MsG0380016649.01.T01	AT5G59865	38.679	106	60	3	4	108	7	108	1.80e-13	65.5
MsG0380016649.01.T01	AT1G18630	42.222	90	41	3	7	93	24	105	4.18e-13	65.5
MsG0380016649.01.T01	AT4G24770	37.805	82	46	2	26	104	245	324	2.55e-12	65.9
MsG0380016649.01.T01	AT4G24770	37.805	82	46	2	26	104	245	324	2.55e-12	65.9
MsG0380016649.01.T01	AT1G74230	38.462	78	48	0	25	102	34	111	4.16e-12	65.1
MsG0380016649.01.T01	AT5G61030	40.580	69	37	1	25	93	40	104	4.54e-12	65.1
MsG0380016649.01.T01	AT5G61030	40.580	69	37	1	25	93	40	104	4.54e-12	65.1
MsG0380016649.01.T01	AT1G58470	39.286	84	46	2	26	104	7	90	5.80e-12	65.1
MsG0380016649.01.T01	AT1G58470	39.286	84	46	2	26	104	7	90	5.80e-12	65.1

Find 57 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAAGCTAGTATTGCAGAATT+TGG	0.133500	3:-86088115	None:intergenic
CATTTCCTTATCCAGTTTAC+AGG	0.255476	3:+86088432	MsG0380016649.01.T01:CDS
TAGCGGAGGAAGCTTGAAAT+TGG	0.286170	3:-86088382	None:intergenic
GCATATTACCAACCATATTA+TGG	0.290202	3:+86088903	MsG0380016649.01.T01:CDS
CTTCCATCAATCATAGGATT+AGG	0.291686	3:-86088145	None:intergenic
CGTTGTGTCACCTGCATGTC+TGG	0.303003	3:-86087840	None:intergenic
ATTGAAGTAGAAGGTGAAAT+AGG	0.308122	3:-86088999	None:intergenic
AGCTGAAGATGTTTGATCTA+TGG	0.314628	3:-86089179	None:intergenic
ACGTTTGAGTGTGTCTCTTT+TGG	0.328289	3:-86087900	None:intergenic
GCTCTTCTTCCATCAATCAT+AGG	0.349904	3:-86088151	None:intergenic
GCATGTCTGGGAACAACGTT+TGG	0.351568	3:-86087827	None:intergenic
AATCCTAATCCTATGATTGA+TGG	0.351854	3:+86088142	MsG0380016649.01.T01:CDS
ACTGGAAAATCAAAAGGATA+TGG	0.353762	3:+86087977	MsG0380016649.01.T01:CDS
TCCACAAGACATTTATGAAA+TGG	0.383435	3:+86088753	MsG0380016649.01.T01:CDS
TGTCTACTAAGGCCATAATA+TGG	0.389412	3:-86088915	None:intergenic
AAACCTGATCCATCTTTAAC+AGG	0.399193	3:+86088196	MsG0380016649.01.T01:CDS
GAAGGTTCTACCATTCTTGT+TGG	0.408555	3:-86089157	None:intergenic
TCAATTGTGTACCTGTAAAC+TGG	0.414213	3:-86088443	None:intergenic
TTACTATTAGGTTACCTTCA+AGG	0.418983	3:+86088090	MsG0380016649.01.T01:intron
GACCTCAATTTCCATTTCGC+TGG	0.433405	3:+86088874	MsG0380016649.01.T01:CDS
ACTAATTAACCAACCAGTGC+TGG	0.444035	3:-86089024	None:intergenic
TGCAGAATTTGGATCCTTGA+AGG	0.446475	3:-86088104	None:intergenic
ACACAATTCCATGATGTTGT+TGG	0.449254	3:+86088966	MsG0380016649.01.T01:CDS
CAGAGCTATAATAATGCATA+TGG	0.465744	3:+86088846	MsG0380016649.01.T01:intron
TATGCGGGAAACCAGCGAAA+TGG	0.468325	3:-86088885	None:intergenic
GTGTACCTGTAAACTGGATA+AGG	0.471493	3:-86088437	None:intergenic
CAATGATCACCTGTTAAAGA+TGG	0.477800	3:-86088205	None:intergenic
ACTGGTGAAGTATTCCTTGA+AGG	0.483874	3:-86088359	None:intergenic
TCACCTGTTAAAGATGGATC+AGG	0.494803	3:-86088199	None:intergenic
AACAGTAGCTCCAACAAGAA+TGG	0.495500	3:+86089147	MsG0380016649.01.T01:CDS
TCTACTTCAATTTCCAGCAC+TGG	0.496194	3:+86089011	MsG0380016649.01.T01:CDS
ACCATTTCATAAATGTCTTG+TGG	0.516984	3:-86088754	None:intergenic
GTGCTGGAAATTGAAGTAGA+AGG	0.519894	3:-86089008	None:intergenic
AGAACCACTGGAAAATCAAA+AGG	0.523643	3:+86087971	MsG0380016649.01.T01:CDS
AACGTTGTTCCCAGACATGC+AGG	0.524945	3:+86087830	MsG0380016649.01.T01:CDS
TTGGAATTAACTGTCTACTA+AGG	0.526949	3:-86088926	None:intergenic
TAATATGGTTGGTAATATGC+GGG	0.537210	3:-86088900	None:intergenic
AGAAATTCAATAGTCCTTCA+AGG	0.545897	3:+86088345	MsG0380016649.01.T01:CDS
TACTAAGGCCATAATATGGT+TGG	0.546853	3:-86088911	None:intergenic
TCTTGTGGACGAAGATAACC+AGG	0.552392	3:-86088739	None:intergenic
CTGATATGCCAACAACATCA+TGG	0.553155	3:-86088974	None:intergenic
GTCATCACTGACAGAACCAC+TGG	0.557127	3:+86087959	MsG0380016649.01.T01:CDS
GGATAAGGAAATGCATATTG+TGG	0.558359	3:-86088422	None:intergenic
AACCAGCGAAATGGAAATTG+AGG	0.559282	3:-86088876	None:intergenic
TATAATAATGCATATGGTGG+TGG	0.560931	3:+86088852	MsG0380016649.01.T01:CDS
GAAGATGTTTGATCTATGGA+AGG	0.580141	3:-86089175	None:intergenic
GGACGAAGATAACCAGGGTG+AGG	0.588093	3:-86088733	None:intergenic
AATATGTTGATTGTAATTAG+CGG	0.590496	3:-86088399	None:intergenic
ATAATATGGTTGGTAATATG+CGG	0.592393	3:-86088901	None:intergenic
GAGGAAGCTTGAAATTGGAC+TGG	0.593080	3:-86088377	None:intergenic
AAATTCATATGTCACATACA+AGG	0.600270	3:+86087786	None:intergenic
ATGTTGATTGTAATTAGCGG+AGG	0.629351	3:-86088396	None:intergenic
GTTGTGTCACCTGCATGTCT+GGG	0.638541	3:-86087839	None:intergenic
GACGAAGATAACCAGGGTGA+GGG	0.640725	3:-86088732	None:intergenic
AGCTATAATAATGCATATGG+TGG	0.647959	3:+86088849	MsG0380016649.01.T01:CDS
ACATTCAGGTACCCTCACCC+TGG	0.671199	3:+86088721	MsG0380016649.01.T01:intron
CTTGTGGACGAAGATAACCA+GGG	0.807035	3:-86088738	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATCACTTAAATTTAATCTT+TGG	+	Chr3:86088053-86088072	MsG0380016649.01.T01:intron	15.0%
!!	AGAAAAACATAATTTAGATT+AGG	-	Chr3:86088823-86088842	None:intergenic	15.0%
!!!	TTAATTTTCTTCTTACTATT+AGG	+	Chr3:86088078-86088097	MsG0380016649.01.T01:intron	15.0%
!!	AAACAAAATGAAACAAACTT+AGG	+	Chr3:86088317-86088336	MsG0380016649.01.T01:intron	20.0%
!!	ATTAGGAATATAATCTGATA+TGG	-	Chr3:86088806-86088825	None:intergenic	20.0%
!!	CTGATAATAATTTGAGAAAA+TGG	-	Chr3:86088584-86088603	None:intergenic	20.0%
!!!	AATATGTTGATTGTAATTAG+CGG	-	Chr3:86088402-86088421	None:intergenic	20.0%
!!!	TTTATAAGTTTTTTGTGCAT+TGG	+	Chr3:86089101-86089120	MsG0380016649.01.T01:intron	20.0%
!!!	TTTTCTCAAATTATTATCAG+TGG	+	Chr3:86088584-86088603	MsG0380016649.01.T01:intron	20.0%
!	AAAATGAAACAAACTTAGGT+AGG	+	Chr3:86088321-86088340	MsG0380016649.01.T01:intron	25.0%
!	AAATTATTATCAGTGGTGTT+AGG	+	Chr3:86088591-86088610	MsG0380016649.01.T01:intron	25.0%
!	TGAGAAAATGGAATATTTGA+AGG	-	Chr3:86088572-86088591	None:intergenic	25.0%
!	TTCTTTAGCATATGTCAAAT+TGG	-	Chr3:86088696-86088715	None:intergenic	25.0%
!!	AATTATTATCAGTGGTGTTA+GGG	+	Chr3:86088592-86088611	MsG0380016649.01.T01:intron	25.0%
!!	ACGTATACTAAGATTTTTGT+TGG	+	Chr3:86087860-86087879	MsG0380016649.01.T01:CDS	25.0%
!!	TATACTAAGATTTTTGTTGG+AGG	+	Chr3:86087863-86087882	MsG0380016649.01.T01:CDS	25.0%
!!!	AAACGTTATTTTGATCAGTT+TGG	+	Chr3:86087917-86087936	MsG0380016649.01.T01:CDS	25.0%
!!!	ATAATATGGTTGGTAATATG+CGG	-	Chr3:86088904-86088923	None:intergenic	25.0%
	AATCCTAATCCTATGATTGA+TGG	+	Chr3:86088142-86088161	MsG0380016649.01.T01:CDS	30.0%
	ACCATTTCATAAATGTCTTG+TGG	-	Chr3:86088757-86088776	None:intergenic	30.0%
	ACTGGAAAATCAAAAGGATA+TGG	+	Chr3:86087977-86087996	MsG0380016649.01.T01:CDS	30.0%
	AGAAATTCAATAGTCCTTCA+AGG	+	Chr3:86088345-86088364	MsG0380016649.01.T01:CDS	30.0%
	AGCTATAATAATGCATATGG+TGG	+	Chr3:86088849-86088868	MsG0380016649.01.T01:CDS	30.0%
	ATTGAAGTAGAAGGTGAAAT+AGG	-	Chr3:86089002-86089021	None:intergenic	30.0%
	CAGAGCTATAATAATGCATA+TGG	+	Chr3:86088846-86088865	MsG0380016649.01.T01:intron	30.0%
	GCATATTACCAACCATATTA+TGG	+	Chr3:86088903-86088922	MsG0380016649.01.T01:CDS	30.0%
	GCTAAAGAATGAATACATTC+AGG	+	Chr3:86088707-86088726	MsG0380016649.01.T01:intron	30.0%
	TATAATAATGCATATGGTGG+TGG	+	Chr3:86088852-86088871	MsG0380016649.01.T01:CDS	30.0%
	TCCACAAGACATTTATGAAA+TGG	+	Chr3:86088753-86088772	MsG0380016649.01.T01:CDS	30.0%
	TGTCTGTAAAATTGTTTCGT+TGG	+	Chr3:86088638-86088657	MsG0380016649.01.T01:intron	30.0%
	TTACTATTAGGTTACCTTCA+AGG	+	Chr3:86088090-86088109	MsG0380016649.01.T01:intron	30.0%
	TTGGAATTAACTGTCTACTA+AGG	-	Chr3:86088929-86088948	None:intergenic	30.0%
	TTGTGCATTGGATTAAAACA+GGG	+	Chr3:86089113-86089132	MsG0380016649.01.T01:intron	30.0%
	TTTGTGCATTGGATTAAAAC+AGG	+	Chr3:86089112-86089131	MsG0380016649.01.T01:intron	30.0%
!!	GTAATTTGCACTTACTCTTT+TGG	+	Chr3:86088004-86088023	MsG0380016649.01.T01:intron	30.0%
!!	TAATATGGTTGGTAATATGC+GGG	-	Chr3:86088903-86088922	None:intergenic	30.0%
!!!	ATATCCTTTTGATTTTCCAG+TGG	-	Chr3:86087978-86087997	None:intergenic	30.0%
	AAACCTGATCCATCTTTAAC+AGG	+	Chr3:86088196-86088215	MsG0380016649.01.T01:CDS	35.0%
	ACACAATTCCATGATGTTGT+TGG	+	Chr3:86088966-86088985	MsG0380016649.01.T01:CDS	35.0%
	AGAACCACTGGAAAATCAAA+AGG	+	Chr3:86087971-86087990	MsG0380016649.01.T01:CDS	35.0%
	AGCTGAAGATGTTTGATCTA+TGG	-	Chr3:86089182-86089201	None:intergenic	35.0%
	CAAGCTAGTATTGCAGAATT+TGG	-	Chr3:86088118-86088137	None:intergenic	35.0%
	CAATGATCACCTGTTAAAGA+TGG	-	Chr3:86088208-86088227	None:intergenic	35.0%
	CATTTCCTTATCCAGTTTAC+AGG	+	Chr3:86088432-86088451	MsG0380016649.01.T01:CDS	35.0%
	CTTCCATCAATCATAGGATT+AGG	-	Chr3:86088148-86088167	None:intergenic	35.0%
	GAAGATGTTTGATCTATGGA+AGG	-	Chr3:86089178-86089197	None:intergenic	35.0%
	GGATAAGGAAATGCATATTG+TGG	-	Chr3:86088425-86088444	None:intergenic	35.0%
	TACTAAGGCCATAATATGGT+TGG	-	Chr3:86088914-86088933	None:intergenic	35.0%
	TCAATTGTGTACCTGTAAAC+TGG	-	Chr3:86088446-86088465	None:intergenic	35.0%
	TGTCTACTAAGGCCATAATA+TGG	-	Chr3:86088918-86088937	None:intergenic	35.0%
	TGTGCATTGGATTAAAACAG+GGG	+	Chr3:86089114-86089133	MsG0380016649.01.T01:intron	35.0%
!	ATGTTGATTGTAATTAGCGG+AGG	-	Chr3:86088399-86088418	None:intergenic	35.0%
!!	GTCTTTTTCACATATGCTGT+TGG	-	Chr3:86088948-86088967	None:intergenic	35.0%
!!!	TTTTGTTGGAGGATTAGCTT+GGG	+	Chr3:86087874-86087893	MsG0380016649.01.T01:CDS	35.0%
!!!	TTTTTGTTGGAGGATTAGCT+TGG	+	Chr3:86087873-86087892	MsG0380016649.01.T01:CDS	35.0%
	AACAGTAGCTCCAACAAGAA+TGG	+	Chr3:86089147-86089166	MsG0380016649.01.T01:CDS	40.0%
	AACCAGCGAAATGGAAATTG+AGG	-	Chr3:86088879-86088898	None:intergenic	40.0%
	ACTAATTAACCAACCAGTGC+TGG	-	Chr3:86089027-86089046	None:intergenic	40.0%
	CTGATATGCCAACAACATCA+TGG	-	Chr3:86088977-86088996	None:intergenic	40.0%
	GAAGGTTCTACCATTCTTGT+TGG	-	Chr3:86089160-86089179	None:intergenic	40.0%
	GCTCTTCTTCCATCAATCAT+AGG	-	Chr3:86088154-86088173	None:intergenic	40.0%
	GTGCTGGAAATTGAAGTAGA+AGG	-	Chr3:86089011-86089030	None:intergenic	40.0%
	GTGTACCTGTAAACTGGATA+AGG	-	Chr3:86088440-86088459	None:intergenic	40.0%
	TCACCTGTTAAAGATGGATC+AGG	-	Chr3:86088202-86088221	None:intergenic	40.0%
	TCTACTTCAATTTCCAGCAC+TGG	+	Chr3:86089011-86089030	MsG0380016649.01.T01:CDS	40.0%
	TGCAGAATTTGGATCCTTGA+AGG	-	Chr3:86088107-86088126	None:intergenic	40.0%
	TTAGGGTTCATGTTCAGTGT+CGG	+	Chr3:86088609-86088628	MsG0380016649.01.T01:intron	40.0%
	TTGAAGGTAACCACATGTGT+GGG	-	Chr3:86088556-86088575	None:intergenic	40.0%
	TTTGAAGGTAACCACATGTG+TGG	-	Chr3:86088557-86088576	None:intergenic	40.0%
!	ACGTTTGAGTGTGTCTCTTT+TGG	-	Chr3:86087903-86087922	None:intergenic	40.0%
!	ACTGGTGAAGTATTCCTTGA+AGG	-	Chr3:86088362-86088381	None:intergenic	40.0%
!!	ACGCTTTTGATCTGAAGTGT+CGG	-	Chr3:86088496-86088515	None:intergenic	40.0%
	CTTGTGGACGAAGATAACCA+GGG	-	Chr3:86088741-86088760	None:intergenic	45.0%
	GACCTCAATTTCCATTTCGC+TGG	+	Chr3:86088874-86088893	MsG0380016649.01.T01:CDS	45.0%
	GAGGAAGCTTGAAATTGGAC+TGG	-	Chr3:86088380-86088399	None:intergenic	45.0%
	TAGCGGAGGAAGCTTGAAAT+TGG	-	Chr3:86088385-86088404	None:intergenic	45.0%
	TCATGACAGGTGTTTGACAC+CGG	+	Chr3:86088525-86088544	MsG0380016649.01.T01:intron	45.0%
	TCTTGTGGACGAAGATAACC+AGG	-	Chr3:86088742-86088761	None:intergenic	45.0%
!!	CTTCAATTTCCAGCACTGGT+TGG	+	Chr3:86089015-86089034	MsG0380016649.01.T01:intron	45.0%
	AACGTTGTTCCCAGACATGC+AGG	+	Chr3:86087830-86087849	MsG0380016649.01.T01:CDS	50.0%
	GACGAAGATAACCAGGGTGA+GGG	-	Chr3:86088735-86088754	None:intergenic	50.0%
	GCATGTCTGGGAACAACGTT+TGG	-	Chr3:86087830-86087849	None:intergenic	50.0%
	GCGTGTATGTGTGTCATGAC+AGG	+	Chr3:86088512-86088531	MsG0380016649.01.T01:intron	50.0%
	GTCATCACTGACAGAACCAC+TGG	+	Chr3:86087959-86087978	MsG0380016649.01.T01:CDS	50.0%
	GTTGTGTCACCTGCATGTCT+GGG	-	Chr3:86087842-86087861	None:intergenic	50.0%
	TATGCGGGAAACCAGCGAAA+TGG	-	Chr3:86088888-86088907	None:intergenic	50.0%
	ACATTCAGGTACCCTCACCC+TGG	+	Chr3:86088721-86088740	MsG0380016649.01.T01:intron	55.0%
	CGTTGTGTCACCTGCATGTC+TGG	-	Chr3:86087843-86087862	None:intergenic	55.0%
	GGACGAAGATAACCAGGGTG+AGG	-	Chr3:86088736-86088755	None:intergenic	55.0%
!	ACCACATGTGTGGGTTGCGC+CGG	-	Chr3:86088547-86088566	None:intergenic	60.0%
	ACCGGCGCAACCCACACATG+TGG	+	Chr3:86088543-86088562	MsG0380016649.01.T01:intron	65.0%

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	86087794	86089204	86087794	ID=MsG0380016649.01;Name=MsG0380016649.01
Chr3	mRNA	86087794	86089204	86087794	ID=MsG0380016649.01.T01;Parent=MsG0380016649.01;Name=MsG0380016649.01.T01;_AED=0.32;_eAED=0.33;_QI=0\|0\|0\|1\|1\|1\|6\|0\|247
Chr3	exon	86087794	86088003	86087794	ID=MsG0380016649.01.T01:exon:22023;Parent=MsG0380016649.01.T01
Chr3	exon	86088100	86088217	86088100	ID=MsG0380016649.01.T01:exon:22024;Parent=MsG0380016649.01.T01
Chr3	exon	86088339	86088453	86088339	ID=MsG0380016649.01.T01:exon:22025;Parent=MsG0380016649.01.T01
Chr3	exon	86088729	86088774	86088729	ID=MsG0380016649.01.T01:exon:22026;Parent=MsG0380016649.01.T01
Chr3	exon	86088849	86089032	86088849	ID=MsG0380016649.01.T01:exon:22027;Parent=MsG0380016649.01.T01
Chr3	exon	86089134	86089204	86089134	ID=MsG0380016649.01.T01:exon:22028;Parent=MsG0380016649.01.T01
Chr3	CDS	86087794	86088003	86087794	ID=MsG0380016649.01.T01:cds;Parent=MsG0380016649.01.T01
Chr3	CDS	86088100	86088217	86088100	ID=MsG0380016649.01.T01:cds;Parent=MsG0380016649.01.T01
Chr3	CDS	86088339	86088453	86088339	ID=MsG0380016649.01.T01:cds;Parent=MsG0380016649.01.T01
Chr3	CDS	86088729	86088774	86088729	ID=MsG0380016649.01.T01:cds;Parent=MsG0380016649.01.T01
Chr3	CDS	86088849	86089032	86088849	ID=MsG0380016649.01.T01:cds;Parent=MsG0380016649.01.T01
Chr3	CDS	86089134	86089204	86089134	ID=MsG0380016649.01.T01:cds;Parent=MsG0380016649.01.T01

Gene Sequence

>MsG0380016649.01.T01

ATGTCACATACAAGGCAAAATAAGATGATGAGTCCAAACGTTGTTCCCAGACATGCAGGTGACACAACGTATACTAAGATTTTTGTTGGAGGATTAGCTTGGGAGACCAAAAGAGACACACTCAAACGTTATTTTGATCAGTTTGGTGATATTTTAGAAGCTGTTGTCATCACTGACAGAACCACTGGAAAATCAAAAGGATATGGCTTTGTTACCTTCAAGGATCCAAATTCTGCAATACTAGCTTGTCAAAATCCTAATCCTATGATTGATGGAAGAAGAGCTAATTGTAATCTTGCATATCAAAAACCTGATCCATCTTTAACAGGTAGGCAGAAATTCAATAGTCCTTCAAGGAATACTTCACCAGTCCAATTTCAAGCTTCCTCCGCTAATTACAATCAACATATTCCACAATATGCATTTCCTTATCCAGTTTACAGGTACCCTCACCCTGGTTATCTTCGTCCACAAGACATTTATGAAATGAGCTATAATAATGCATATGGTGGTGGACCTCAATTTCCATTTCGCTGGTTTCCCGCATATTACCAACCATATTATGGCCTTAGTAGACAGTTAATTCCAACAGCATATGTGAAAAAGACACAATTCCATGATGTTGTTGGCATATCAGAACCTATTTCACCTTCTACTTCAATTTCCAGCACTGGGGTTATCACAGAAACAGTAGCTCCAACAAGAATGGTAGAACCTTCCATAGATCAAACATCTTCAGCTTAA

Protein sequence

>MsG0380016649.01.T01

MSHTRQNKMMSPNVVPRHAGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQNPNPMIDGRRANCNLAYQKPDPSLTGRQKFNSPSRNTSPVQFQASSANYNQHIPQYAFPYPVYRYPHPGYLRPQDIYEMSYNNAYGGGPQFPFRWFPAYYQPYYGLSRQLIPTAYVKKTQFHDVVGISEPISPSTSISSTGVITETVAPTRMVEPSIDQTSSA*