AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043261.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043261.01.T01 MTR_8g032300 96.825 126 4 0 29 154 23 148 1.90e-88 254
MsG0880043261.01.T01 MTR_8g032320 81.746 126 23 0 29 154 23 148 3.32e-76 224
MsG0880043261.01.T01 MTR_1g008950 64.356 101 36 0 31 131 25 125 1.17e-45 145
MsG0880043261.01.T01 MTR_5g079880 37.821 156 80 6 6 150 2 151 6.42e-29 103
MsG0880043261.01.T01 MTR_5g079890 39.394 132 65 4 32 151 27 155 1.03e-26 98.6
MsG0880043261.01.T01 MTR_5g079890 39.286 112 56 3 32 131 27 138 2.03e-23 89.7
MsG0880043261.01.T01 MTR_7g075960 60.377 53 21 0 31 83 1 53 1.69e-20 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043261.01.T01 AT1G63220 52.800 125 58 1 30 154 24 147 1.04e-40 134
MsG0880043261.01.T01 AT1G63220 52.252 111 52 1 44 154 24 133 2.20e-34 117
MsG0880043261.01.T01 AT3G55470 28.931 159 97 6 6 153 2 155 4.97e-15 68.6
MsG0880043261.01.T01 AT3G55470 29.375 160 96 7 6 153 2 156 4.08e-14 66.2

Find 37 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATGTGATCCTCACTTAT+AGG 0.237814 8:-21698094 MsG0880043261.01.T01:CDS
CACTCCTTTACTTTGATTAA+AGG 0.238121 8:+21701115 None:intergenic
CATCCATGTAATTCTTGATT+TGG 0.294132 8:+21697218 None:intergenic
TGAGCTCAATCTAAAGATAA+TGG 0.346296 8:-21697883 MsG0880043261.01.T01:CDS
ACAAGTTTGTAAGAATTCTC+TGG 0.370783 8:+21697493 None:intergenic
TTATGTGATCCTCACTTATA+GGG 0.386347 8:-21698093 MsG0880043261.01.T01:CDS
AAAATATTGTGGAGAGGTTA+AGG 0.388006 8:-21697461 MsG0880043261.01.T01:CDS
TATAGTGCTGATGATAATCT+TGG 0.411031 8:-21697849 MsG0880043261.01.T01:CDS
AACTCCTTTAATCAAAGTAA+AGG 0.443021 8:-21701119 MsG0880043261.01.T01:CDS
ATAACATAGTTTATGTCAAA+AGG 0.450984 8:+21697114 None:intergenic
GAAATGTCTCATTCCATTGA+GGG 0.473516 8:+21697931 None:intergenic
CAATCTAAAGATAATGGAAA+AGG 0.492449 8:-21697877 MsG0880043261.01.T01:CDS
TCTTGAATCACTGTCTCTAA+AGG 0.495815 8:+21697526 None:intergenic
CTGCCAAATCAAGAATTACA+TGG 0.514216 8:-21697221 MsG0880043261.01.T01:three_prime_UTR
GTGCTGGATCCAACCCTCAA+TGG 0.516268 8:-21697944 MsG0880043261.01.T01:CDS
AGAAATGTCTCATTCCATTG+AGG 0.522164 8:+21697930 None:intergenic
CCTCGTGAGTTTAGCTCAGA+TGG 0.531528 8:-21701091 MsG0880043261.01.T01:intron
TGTCTCATTCCATTGAGGGT+TGG 0.547968 8:+21697935 None:intergenic
GTGGATGGAAACAATCGGCT+AGG 0.550623 8:-21697277 MsG0880043261.01.T01:CDS
CTATAAGTGAGGATCACATA+AGG 0.556013 8:+21698095 None:intergenic
TACAATCAAGAGGAGGAGAC+TGG 0.557679 8:-21697299 MsG0880043261.01.T01:CDS
AAGAGGAGGAGACTGGTGGA+TGG 0.563015 8:-21697292 MsG0880043261.01.T01:CDS
GACTGGTGGATGGAAACAAT+CGG 0.565129 8:-21697282 MsG0880043261.01.T01:CDS
GGGACTATTGAAGTGAATGA+AGG 0.567056 8:-21697256 MsG0880043261.01.T01:exon
GATCCTCACTTATAGGGCAC+AGG 0.584755 8:-21698087 MsG0880043261.01.T01:CDS
GAATTCTTACAAACTTGTGA+AGG 0.595780 8:-21697488 MsG0880043261.01.T01:CDS
CACAAGAGTACTGTGCAAGA+AGG 0.601180 8:-21698062 MsG0880043261.01.T01:intron
TGGATGGAAACAATCGGCTA+GGG 0.602214 8:-21697276 MsG0880043261.01.T01:CDS
AATCAAGAGGAGGAGACTGG+TGG 0.628097 8:-21697296 MsG0880043261.01.T01:CDS
TTTAGAGACAGTGATTCAAG+AGG 0.636421 8:-21697524 MsG0880043261.01.T01:CDS
TGAACGGAGTTACAATCAAG+AGG 0.638924 8:-21697309 MsG0880043261.01.T01:CDS
TTAGAGACAGTGATTCAAGA+GGG 0.640617 8:-21697523 MsG0880043261.01.T01:CDS
GCTCCTGTGCCCTATAAGTG+AGG 0.645283 8:+21698084 None:intergenic
CCATCTGAGCTAAACTCACG+AGG 0.674207 8:+21701091 None:intergenic
GGTTGCAGAGAAACTATGAA+CGG 0.677708 8:-21697325 MsG0880043261.01.T01:intron
ATATTGTGGAGAGGTTAAGG+TGG 0.690996 8:-21697458 MsG0880043261.01.T01:CDS
ACGGAGTTACAATCAAGAGG+AGG 0.705054 8:-21697306 MsG0880043261.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAAAATTTAGAAATAATT+AGG + Chr8:21697553-21697572 None:intergenic 10.0%
!! TATTTATATAAAATAAATGG+TGG - Chr8:21699073-21699092 MsG0880043261.01.T01:intron 10.0%
!! TTATCTAAATTTATTTATCT+TGG + Chr8:21698950-21698969 None:intergenic 10.0%
!!! GTTTTTATTATTTTTTTTTG+AGG + Chr8:21698882-21698901 None:intergenic 10.0%
!! AAAAAATAATAAAAACTCTC+TGG - Chr8:21698886-21698905 MsG0880043261.01.T01:intron 15.0%
!! AAAAATACACATCATTAATT+TGG - Chr8:21698381-21698400 MsG0880043261.01.T01:intron 15.0%
!! AAGAAAAATATTAGAAAAAC+AGG + Chr8:21700832-21700851 None:intergenic 15.0%
!! ACTTAAAAAAAATGTGTTTA+TGG - Chr8:21697812-21697831 MsG0880043261.01.T01:intron 15.0%
!! GAAAAATGATATAAAATGTT+TGG - Chr8:21697449-21697468 MsG0880043261.01.T01:CDS 15.0%
!! GATAAAAATTATTCTAATTG+TGG - Chr8:21698965-21698984 MsG0880043261.01.T01:intron 15.0%
!! TTATTTGTGAATTAAAATGA+GGG - Chr8:21698337-21698356 MsG0880043261.01.T01:intron 15.0%
!! TTTATTTGTGAATTAAAATG+AGG - Chr8:21698336-21698355 MsG0880043261.01.T01:intron 15.0%
!!! AAATTTTTTTGATCTTAAGT+TGG - Chr8:21699521-21699540 MsG0880043261.01.T01:intron 15.0%
!!! AACAATTTTAATAGTCAAAT+TGG + Chr8:21700055-21700074 None:intergenic 15.0%
!!! ATAAAATTTTACATGTTTAC+AGG - Chr8:21697509-21697528 MsG0880043261.01.T01:CDS 15.0%
!!! CAAAATTTGTGAATTTTTTT+AGG - Chr8:21697476-21697495 MsG0880043261.01.T01:CDS 15.0%
!!! TTTTTATAAAAACAAGAACA+AGG + Chr8:21697345-21697364 None:intergenic 15.0%
!! AAAAATACACTCAAGTTAAT+TGG - Chr8:21697427-21697446 MsG0880043261.01.T01:intron 20.0%
!! AACAATCCAAATATATAGAT+CGG + Chr8:21699548-21699567 None:intergenic 20.0%
!! AATAATGACATAAGCTATTT+AGG - Chr8:21699131-21699150 MsG0880043261.01.T01:intron 20.0%
!! AATATGCTAACACATTAATA+TGG + Chr8:21698619-21698638 None:intergenic 20.0%
!! ACATTTAAAAGGAAAAAAGT+TGG - Chr8:21699215-21699234 MsG0880043261.01.T01:intron 20.0%
!! AGAAGAAATAAAAGATGATA+TGG + Chr8:21697575-21697594 None:intergenic 20.0%
!! AGTATTAAATTGAGTTTGAT+TGG + Chr8:21699243-21699262 None:intergenic 20.0%
!! ATAACATAGTTTATGTCAAA+AGG + Chr8:21701116-21701135 None:intergenic 20.0%
!! ATAATATGATAAAACCAAAC+CGG + Chr8:21699848-21699867 None:intergenic 20.0%
!! ATAATGACATAAGCTATTTA+GGG - Chr8:21699132-21699151 MsG0880043261.01.T01:intron 20.0%
!! CACACAAAAAAAAAAAGTTA+AGG - Chr8:21697209-21697228 MsG0880043261.01.T01:three_prime_UTR 20.0%
!! CGAAAAAAATAGAAATTTGT+TGG - Chr8:21698220-21698239 MsG0880043261.01.T01:intron 20.0%
!! CGACAACATATTAAATTTAT+TGG - Chr8:21698283-21698302 MsG0880043261.01.T01:intron 20.0%
!! CTGATTTCAAAAATTCTAAA+TGG + Chr8:21699344-21699363 None:intergenic 20.0%
!! TCTAGATTATTATCTCTAAT+AGG + Chr8:21699311-21699330 None:intergenic 20.0%
!! TTAATAATCAACATCAATCA+TGG + Chr8:21698824-21698843 None:intergenic 20.0%
!! TTTCCTTGCAAATAATATAA+AGG + Chr8:21697648-21697667 None:intergenic 20.0%
!!! AACATTTTAATGTTGGTATT+TGG + Chr8:21698495-21698514 None:intergenic 20.0%
!!! AATGTTGTAATTTGTAATGT+TGG - Chr8:21700655-21700674 MsG0880043261.01.T01:intron 20.0%
!!! AATTAAAATGAGGGTATAAT+AGG - Chr8:21698346-21698365 MsG0880043261.01.T01:intron 20.0%
!!! ATTGGTTTATGAATAATATC+AGG - Chr8:21700261-21700280 MsG0880043261.01.T01:intron 20.0%
!!! ATTTATAAAAAAAGCACCAA+TGG + Chr8:21698596-21698615 None:intergenic 20.0%
!!! ATTTTAATCTCTGTATTTTC+TGG - Chr8:21701060-21701079 MsG0880043261.01.T01:intron 20.0%
!!! CATGAGTTTTTATTGAATAT+CGG + Chr8:21700503-21700522 None:intergenic 20.0%
!!! CTTAACTTTTTTTTTTTGTG+TGG + Chr8:21697211-21697230 None:intergenic 20.0%
!!! GGATTATACTTTTAATACAA+GGG + Chr8:21698569-21698588 None:intergenic 20.0%
!!! TGGATTATACTTTTAATACA+AGG + Chr8:21698570-21698589 None:intergenic 20.0%
!!! TGTATTTTTCATATATGTTG+AGG + Chr8:21697416-21697435 None:intergenic 20.0%
! AAAAAAAAAGTTAAGGAGTC+AGG - Chr8:21697216-21697235 MsG0880043261.01.T01:three_prime_UTR 25.0%
! AAAAAAAAGTTAAGGAGTCA+GGG - Chr8:21697217-21697236 MsG0880043261.01.T01:three_prime_UTR 25.0%
! AACTCCTTTAATCAAAGTAA+AGG - Chr8:21697108-21697127 MsG0880043261.01.T01:three_prime_UTR 25.0%
! ATAACTGAAAAGTTGAATGT+TGG - Chr8:21700562-21700581 MsG0880043261.01.T01:intron 25.0%
! ATGAACTTCAATAAATCAGT+TGG + Chr8:21699007-21699026 None:intergenic 25.0%
! GTGTTGTATGCTATTAAATT+GGG - Chr8:21699881-21699900 MsG0880043261.01.T01:intron 25.0%
! TAAAAACTCATGATATTGCA+AGG - Chr8:21700511-21700530 MsG0880043261.01.T01:intron 25.0%
! TAAAACGCACTATCAATTAT+TGG - Chr8:21700881-21700900 MsG0880043261.01.T01:intron 25.0%
! TAAAGAGACTCACATTTAAA+AGG - Chr8:21699204-21699223 MsG0880043261.01.T01:intron 25.0%
! TATAAAAACAAGAACAAGGT+GGG + Chr8:21697341-21697360 None:intergenic 25.0%
! TGAACTTCAATAAATCAGTT+GGG + Chr8:21699006-21699025 None:intergenic 25.0%
! TGTAAAAACAAGAACAAAGT+GGG - Chr8:21697915-21697934 MsG0880043261.01.T01:CDS 25.0%
! TGTGTTGTATGCTATTAAAT+TGG - Chr8:21699880-21699899 MsG0880043261.01.T01:intron 25.0%
! TTATAAAAACAAGAACAAGG+TGG + Chr8:21697342-21697361 None:intergenic 25.0%
! TTGCACAAAAAAAGATTGAA+TGG - Chr8:21698718-21698737 MsG0880043261.01.T01:intron 25.0%
!! AAATAAATGGTGGAATGAAT+TGG - Chr8:21699083-21699102 MsG0880043261.01.T01:intron 25.0%
!! AACTAGTTTACACTTAAAAG+AGG - Chr8:21700628-21700647 MsG0880043261.01.T01:intron 25.0%
!! AATGTTGGTATTTGGTTTAA+TGG + Chr8:21698487-21698506 None:intergenic 25.0%
!! GATCACAAATTTCATACTTT+TGG + Chr8:21699490-21699509 None:intergenic 25.0%
!! TTTGGTTTAATGGTAGTATT+TGG + Chr8:21698477-21698496 None:intergenic 25.0%
!! TTTTAAATGTGAGTCTCTTT+AGG + Chr8:21699205-21699224 None:intergenic 25.0%
!!! AACTTTTTTTTTTTGTGTGG+TGG + Chr8:21697208-21697227 None:intergenic 25.0%
!!! AATTGATAGTGCGTTTTAAT+AGG + Chr8:21700879-21700898 None:intergenic 25.0%
!!! ACTCTTTTTTTAGTTGTTAG+AGG - Chr8:21697682-21697701 MsG0880043261.01.T01:intron 25.0%
!!! ATTGATAGTGCGTTTTAATA+GGG + Chr8:21700878-21700897 None:intergenic 25.0%
!!! CAATCTAAAGATAATGGAAA+AGG - Chr8:21700350-21700369 MsG0880043261.01.T01:intron 25.0%
!!! GCTTTTGATTAATGTGAATT+TGG - Chr8:21698108-21698127 MsG0880043261.01.T01:CDS 25.0%
AAAATATTGTGGAGAGGTTA+AGG - Chr8:21700766-21700785 MsG0880043261.01.T01:intron 30.0%
AAACGAACACTATAACAAGA+CGG + Chr8:21699737-21699756 None:intergenic 30.0%
AAAGTATAATCCACTTCCAT+TGG - Chr8:21698577-21698596 MsG0880043261.01.T01:intron 30.0%
AACAAAGATCAAGACTTTAG+AGG + Chr8:21700089-21700108 None:intergenic 30.0%
AATGTATCTCCATTAAACTC+AGG + Chr8:21700458-21700477 None:intergenic 30.0%
AATGTTGACAGCTAAATCAT+TGG + Chr8:21699802-21699821 None:intergenic 30.0%
ACAAGTTTGTAAGAATTCTC+TGG + Chr8:21700737-21700756 None:intergenic 30.0%
AGAAACTAACGTCTGTTTAT+GGG + Chr8:21698783-21698802 None:intergenic 30.0%
AGACTCAATTAACAAGCTTT+AGG + Chr8:21699571-21699590 None:intergenic 30.0%
AGATTAAAAAACGCAGCAAA+CGG + Chr8:21698522-21698541 None:intergenic 30.0%
ATTAATTAATTGCAGCCTCA+TGG + Chr8:21698697-21698716 None:intergenic 30.0%
CAAATAATATAAAGGACCCT+TGG + Chr8:21697640-21697659 None:intergenic 30.0%
CACACCATTTAATATTGTTG+AGG - Chr8:21697708-21697727 MsG0880043261.01.T01:intron 30.0%
CACTCCTTTACTTTGATTAA+AGG + Chr8:21697115-21697134 None:intergenic 30.0%
CATCCATGTAATTCTTGATT+TGG + Chr8:21701012-21701031 None:intergenic 30.0%
CATCGCTAAAAACGAAAAAA+AGG + Chr8:21699933-21699952 None:intergenic 30.0%
CTGATTTAGTGAATCAATTC+AGG - Chr8:21699602-21699621 MsG0880043261.01.T01:intron 30.0%
CTGTAAAAACAAGAACAAAG+TGG - Chr8:21697914-21697933 MsG0880043261.01.T01:CDS 30.0%
GAATTCTTACAAACTTGTGA+AGG - Chr8:21700739-21700758 MsG0880043261.01.T01:intron 30.0%
GACAATGCATAATATATGCA+AGG - Chr8:21697163-21697182 MsG0880043261.01.T01:three_prime_UTR 30.0%
GACACCTCAACAATATTAAA+TGG + Chr8:21697715-21697734 None:intergenic 30.0%
GGTCCTTTATATTATTTGCA+AGG - Chr8:21697642-21697661 MsG0880043261.01.T01:intron 30.0%
GTGAAGGATGAAAAATATTG+TGG - Chr8:21700755-21700774 MsG0880043261.01.T01:intron 30.0%
TAGAAACTAACGTCTGTTTA+TGG + Chr8:21698784-21698803 None:intergenic 30.0%
TATTGGCAAACTTAATCCAA+GGG - Chr8:21697621-21697640 MsG0880043261.01.T01:intron 30.0%
TGAGCTCAATCTAAAGATAA+TGG - Chr8:21700344-21700363 MsG0880043261.01.T01:intron 30.0%
TTAAACTCAGGATGAATCAA+AGG + Chr8:21700446-21700465 None:intergenic 30.0%
TTATGAATAATATCAGGTGC+TGG - Chr8:21700267-21700286 MsG0880043261.01.T01:intron 30.0%
TTATGTGATCCTCACTTATA+GGG - Chr8:21700134-21700153 MsG0880043261.01.T01:intron 30.0%
TTATTGGCAAACTTAATCCA+AGG - Chr8:21697620-21697639 MsG0880043261.01.T01:intron 30.0%
TTCTACAAAGACGCTTAAAA+AGG - Chr8:21698412-21698431 MsG0880043261.01.T01:intron 30.0%
TTCTCTAGTTGCTTGATTAT+TGG - Chr8:21700243-21700262 MsG0880043261.01.T01:intron 30.0%
TTGAAATTCTGCATCAAACA+AGG - Chr8:21699462-21699481 MsG0880043261.01.T01:intron 30.0%
TTGATTCATCCTGAGTTTAA+TGG - Chr8:21700446-21700465 MsG0880043261.01.T01:intron 30.0%
! CTGAATTGATTCACTAAATC+AGG + Chr8:21699604-21699623 None:intergenic 30.0%
! TTAAGTTGTAGTGAGAAAGT+TGG + Chr8:21700541-21700560 None:intergenic 30.0%
!! AGTTTCTAGTTTCTACTCTA+AGG - Chr8:21698796-21698815 MsG0880043261.01.T01:intron 30.0%
!! CGGCTTAAACATTTTAATGT+TGG + Chr8:21698502-21698521 None:intergenic 30.0%
!! TACTATATATACGCTGATTC+AGG - Chr8:21699259-21699278 MsG0880043261.01.T01:intron 30.0%
!! TATAGTGCTGATGATAATCT+TGG - Chr8:21700378-21700397 MsG0880043261.01.T01:intron 30.0%
!!! CACTTTGTTCTTGTTTTTAC+AGG + Chr8:21697916-21697935 None:intergenic 30.0%
!!! TTTAATACAAGGGTGCTTTT+AGG + Chr8:21698559-21698578 None:intergenic 30.0%
AGAAATGTCTCATTCCATTG+AGG + Chr8:21700300-21700319 None:intergenic 35.0%
AGTTGTTTGATCAGTGCTAA+AGG - Chr8:21699390-21699409 MsG0880043261.01.T01:intron 35.0%
CAAAGACGCTTAAAAAGGAA+CGG - Chr8:21698417-21698436 MsG0880043261.01.T01:intron 35.0%
CAGAGAAAATCATTGTCTCA+AGG + Chr8:21699416-21699435 None:intergenic 35.0%
CTATAAGTGAGGATCACATA+AGG + Chr8:21700135-21700154 None:intergenic 35.0%
CTGCCAAATCAAGAATTACA+TGG - Chr8:21701006-21701025 MsG0880043261.01.T01:intron 35.0%
CTTATGTGATCCTCACTTAT+AGG - Chr8:21700133-21700152 MsG0880043261.01.T01:intron 35.0%
GAAATGTCTCATTCCATTGA+GGG + Chr8:21700299-21700318 None:intergenic 35.0%
GAGTACATTGAATACAGTCT+CGG + Chr8:21699962-21699981 None:intergenic 35.0%
GGATGAAAAATATTGTGGAG+AGG - Chr8:21700760-21700779 MsG0880043261.01.T01:intron 35.0%
GTTAGCATATTCACACATTG+TGG - Chr8:21698628-21698647 MsG0880043261.01.T01:intron 35.0%
GTTGGTCCGATCTATATATT+TGG - Chr8:21699539-21699558 MsG0880043261.01.T01:intron 35.0%
TAATCAAAGTCAAGCAGTCA+CGG + Chr8:21698056-21698075 None:intergenic 35.0%
TCTTGAATCACTGTCTCTAA+AGG + Chr8:21700704-21700723 None:intergenic 35.0%
TGCATAATATATGCAAGGTC+CGG - Chr8:21697168-21697187 MsG0880043261.01.T01:three_prime_UTR 35.0%
TTAGAGACAGTGATTCAAGA+GGG - Chr8:21700704-21700723 MsG0880043261.01.T01:intron 35.0%
TTTAGAGACAGTGATTCAAG+AGG - Chr8:21700703-21700722 MsG0880043261.01.T01:intron 35.0%
! AACAAAGTGGGTTCTTGAAA+TGG - Chr8:21697927-21697946 MsG0880043261.01.T01:CDS 35.0%
! ACTCTCTGGTTCATAAAGAA+AGG - Chr8:21698900-21698919 MsG0880043261.01.T01:intron 35.0%
! CTCTCTGGTTCATAAAGAAA+GGG - Chr8:21698901-21698920 MsG0880043261.01.T01:intron 35.0%
! TTAGAATGCATTTTCACTCC+AGG + Chr8:21697867-21697886 None:intergenic 35.0%
!! AAAAAAAGCACCAATGGAAG+TGG + Chr8:21698590-21698609 None:intergenic 35.0%
!! AACAAGGTGGGTTTTTGAAA+TGG + Chr8:21697329-21697348 None:intergenic 35.0%
!!! GCTGATTCAGGCATTTTTTT+GGG - Chr8:21699271-21699290 MsG0880043261.01.T01:intron 35.0%
!!! TGGGTTTTTGAAATGGTTTC+AGG + Chr8:21697322-21697341 None:intergenic 35.0%
!!! TTTTTTTTTGTGTGGTGGTC+CGG + Chr8:21697203-21697222 None:intergenic 35.0%
AATGGAAGTCATTACCCTGA+TGG - Chr8:21698736-21698755 MsG0880043261.01.T01:intron 40.0%
ATATTGTGGAGAGGTTAAGG+TGG - Chr8:21700769-21700788 MsG0880043261.01.T01:intron 40.0%
ATGCAATAGATGCATGGAGA+GGG + Chr8:21698674-21698693 None:intergenic 40.0%
ATGCATCTATTGCATCCATG+AGG - Chr8:21698679-21698698 MsG0880043261.01.T01:intron 40.0%
ATGGAAGTCATTACCCTGAT+GGG - Chr8:21698737-21698756 MsG0880043261.01.T01:intron 40.0%
GAAAATGCATTCTAACTCCC+TGG - Chr8:21697872-21697891 MsG0880043261.01.T01:CDS 40.0%
GAGAGGGATGTAAAGGTTAT+TGG + Chr8:21698658-21698677 None:intergenic 40.0%
GGGACTATTGAAGTGAATGA+AGG - Chr8:21700971-21700990 MsG0880043261.01.T01:intron 40.0%
GGTTGCAGAGAAACTATGAA+CGG - Chr8:21700902-21700921 MsG0880043261.01.T01:intron 40.0%
TAATAGCCCAATTCACGAGT+CGG - Chr8:21699671-21699690 MsG0880043261.01.T01:intron 40.0%
TCATGGATGCAATAGATGCA+TGG + Chr8:21698680-21698699 None:intergenic 40.0%
TGAACGGAGTTACAATCAAG+AGG - Chr8:21700918-21700937 MsG0880043261.01.T01:intron 40.0%
TGTCAACATTGCATAACCCT+AGG - Chr8:21699812-21699831 MsG0880043261.01.T01:intron 40.0%
TTCTATAGCCTCATTACCTC+AGG + Chr8:21700809-21700828 None:intergenic 40.0%
! AATGGTAGTATTTGGTTCGC+TGG + Chr8:21698469-21698488 None:intergenic 40.0%
! CTTTTACACCTGAGGTAATG+AGG - Chr8:21700798-21700817 MsG0880043261.01.T01:intron 40.0%
! TGAGTTTAGCTCAGATGGTA+GGG - Chr8:21697141-21697160 MsG0880043261.01.T01:three_prime_UTR 40.0%
!!! CGCTGATTCAGGCATTTTTT+TGG - Chr8:21699270-21699289 MsG0880043261.01.T01:intron 40.0%
!!! TTTTTTTTGTGTGGTGGTCC+GGG + Chr8:21697202-21697221 None:intergenic 40.0%
AAACCGGAATACTCATGCCT+AGG + Chr8:21699832-21699851 None:intergenic 45.0%
AAAGACCCACTTCATTTGCC+AGG + Chr8:21697893-21697912 None:intergenic 45.0%
AACCCTAGGCATGAGTATTC+CGG - Chr8:21699826-21699845 MsG0880043261.01.T01:intron 45.0%
AACCGGAATACTCATGCCTA+GGG + Chr8:21699831-21699850 None:intergenic 45.0%
AACTCCCTGGCAAATGAAGT+GGG - Chr8:21697885-21697904 MsG0880043261.01.T01:CDS 45.0%
AAGACCCACTTCATTTGCCA+GGG + Chr8:21697892-21697911 None:intergenic 45.0%
AATCAGAGAAAGATGCCTCG+TGG - Chr8:21699358-21699377 MsG0880043261.01.T01:intron 45.0%
ACGGAGTTACAATCAAGAGG+AGG - Chr8:21700921-21700940 MsG0880043261.01.T01:intron 45.0%
AGGTTTCGATGAACATGAGG+GGG + Chr8:21697847-21697866 None:intergenic 45.0%
ATGCATGGAGAGGGATGTAA+AGG + Chr8:21698665-21698684 None:intergenic 45.0%
CACCACGACGATCAACAATA+AGG + Chr8:21699697-21699716 None:intergenic 45.0%
CAGGTTTCGATGAACATGAG+GGG + Chr8:21697848-21697867 None:intergenic 45.0%
CCAGGTTTCGATGAACATGA+GGG + Chr8:21697849-21697868 None:intergenic 45.0%
GATGCAATAGATGCATGGAG+AGG + Chr8:21698675-21698694 None:intergenic 45.0%
TAACTCCCTGGCAAATGAAG+TGG - Chr8:21697884-21697903 MsG0880043261.01.T01:CDS 45.0%
TACAATCAAGAGGAGGAGAC+TGG - Chr8:21700928-21700947 MsG0880043261.01.T01:intron 45.0%
TAGGCATGAGTATTCCGGTT+TGG - Chr8:21699831-21699850 MsG0880043261.01.T01:intron 45.0%
TCCAGGTTTCGATGAACATG+AGG + Chr8:21697850-21697869 None:intergenic 45.0%
TGGATGGAAACAATCGGCTA+GGG - Chr8:21700951-21700970 MsG0880043261.01.T01:intron 45.0%
TGTCTCATTCCATTGAGGGT+TGG + Chr8:21700295-21700314 None:intergenic 45.0%
! GACTGGTGGATGGAAACAAT+CGG - Chr8:21700945-21700964 MsG0880043261.01.T01:intron 45.0%
! GTGAGTTTAGCTCAGATGGT+AGG - Chr8:21697140-21697159 MsG0880043261.01.T01:three_prime_UTR 45.0%
!! AATAAGGCCGACTCGTGAAT+TGG + Chr8:21699681-21699700 None:intergenic 45.0%
!! ATAAGGCCGACTCGTGAATT+GGG + Chr8:21699680-21699699 None:intergenic 45.0%
!! CACAAGAGTACTGTGCAAGA+AGG - Chr8:21700165-21700184 MsG0880043261.01.T01:intron 45.0%
!! ATGTATTTATATAAAATAAA+TGG - Chr8:21699070-21699089 MsG0880043261.01.T01:intron 5.0%
!!! ACAAAATTTTATATTATTAT+TGG - Chr8:21697604-21697623 MsG0880043261.01.T01:intron 5.0%
!!! AGTTTTTTTTTTTTAAAAAA+GGG + Chr8:21700007-21700026 None:intergenic 5.0%
!!! TAGTTTTTTTTTTTTAAAAA+AGG + Chr8:21700008-21700027 None:intergenic 5.0%
AATCAAGAGGAGGAGACTGG+TGG - Chr8:21700931-21700950 MsG0880043261.01.T01:intron 50.0%
ACAACTTCAAGCGTTCCACG+AGG + Chr8:21699376-21699395 None:intergenic 50.0%
ATGGGTCAGTGTACCGGAAA+CGG - Chr8:21698755-21698774 MsG0880043261.01.T01:intron 50.0%
CCATCTGAGCTAAACTCACG+AGG + Chr8:21697139-21697158 None:intergenic 50.0%
CCCTCATGTTCATCGAAACC+TGG - Chr8:21697846-21697865 MsG0880043261.01.T01:CDS 50.0%
CTGTTTATGGGCTCCGTTTC+CGG + Chr8:21698771-21698790 None:intergenic 50.0%
GATCCTCACTTATAGGGCAC+AGG - Chr8:21700140-21700159 MsG0880043261.01.T01:intron 50.0%
GTGGATGGAAACAATCGGCT+AGG - Chr8:21700950-21700969 MsG0880043261.01.T01:intron 50.0%
! CCTCGTGAGTTTAGCTCAGA+TGG - Chr8:21697136-21697155 MsG0880043261.01.T01:three_prime_UTR 50.0%
! GGTAGTATTTGGTTCGCTGG+TGG + Chr8:21698466-21698485 None:intergenic 50.0%
!! GGCCTTATTGTTGATCGTCG+TGG - Chr8:21699692-21699711 MsG0880043261.01.T01:intron 50.0%
!! GGCTCTCACTTTTACACCTG+AGG - Chr8:21700790-21700809 MsG0880043261.01.T01:intron 50.0%
AAGAGGAGGAGACTGGTGGA+TGG - Chr8:21700935-21700954 MsG0880043261.01.T01:intron 55.0%
CAAGGTCCGGAGTTCAAACC+CGG - Chr8:21697181-21697200 MsG0880043261.01.T01:three_prime_UTR 55.0%
GCTCCTGTGCCCTATAAGTG+AGG + Chr8:21700146-21700165 None:intergenic 55.0%
GTGCTGGATCCAACCCTCAA+TGG - Chr8:21700283-21700302 MsG0880043261.01.T01:intron 55.0%
TCCGGTACACTGACCCATCA+GGG + Chr8:21698753-21698772 None:intergenic 55.0%
TTCCGGTACACTGACCCATC+AGG + Chr8:21698754-21698773 None:intergenic 55.0%
! ACCCTGATGGGTCAGTGTAC+CGG - Chr8:21698749-21698768 MsG0880043261.01.T01:intron 55.0%
GGTGGTCCGGGTTTGAACTC+CGG + Chr8:21697190-21697209 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 21697076 21701173 21697076 ID=MsG0880043261.01;Name=MsG0880043261.01
Chr8 mRNA 21697076 21701173 21697076 ID=MsG0880043261.01.T01;Parent=MsG0880043261.01;Name=MsG0880043261.01.T01;_AED=0.47;_eAED=0.54;_QI=0|0.75|0.6|1|0.75|0.6|5|192|154
Chr8 exon 21697076 21697339 21697076 ID=MsG0880043261.01.T01:exon:4480;Parent=MsG0880043261.01.T01
Chr8 exon 21697438 21697552 21697438 ID=MsG0880043261.01.T01:exon:4479;Parent=MsG0880043261.01.T01
Chr8 exon 21697840 21697966 21697840 ID=MsG0880043261.01.T01:exon:4478;Parent=MsG0880043261.01.T01
Chr8 exon 21698063 21698131 21698063 ID=MsG0880043261.01.T01:exon:4477;Parent=MsG0880043261.01.T01
Chr8 exon 21701092 21701173 21701092 ID=MsG0880043261.01.T01:exon:4476;Parent=MsG0880043261.01.T01
Chr8 CDS 21701092 21701173 21701092 ID=MsG0880043261.01.T01:cds;Parent=MsG0880043261.01.T01
Chr8 CDS 21698063 21698131 21698063 ID=MsG0880043261.01.T01:cds;Parent=MsG0880043261.01.T01
Chr8 CDS 21697840 21697966 21697840 ID=MsG0880043261.01.T01:cds;Parent=MsG0880043261.01.T01
Chr8 CDS 21697438 21697552 21697438 ID=MsG0880043261.01.T01:cds;Parent=MsG0880043261.01.T01
Chr8 CDS 21697268 21697339 21697268 ID=MsG0880043261.01.T01:cds;Parent=MsG0880043261.01.T01
Chr8 three_prime_UTR 21697076 21697267 21697076 ID=MsG0880043261.01.T01:three_prime_utr;Parent=MsG0880043261.01.T01
Gene Sequence

>MsG0880043261.01.T01

ATGTATTTTATGAATTCAATTAACTTTCTTTCAACTCCTTTAATCAAAGTAAAGGAGTGTCCTCGTGAGTTTAGCTCAGATGCAGCTAGCATAGATCCTTATGTGATCCTCACTTATAGGGCACAGGAGCACAAGAGTACTGTGCAAGAAGGTGCTGGATCCAACCCTCAATGGAATGAGACATTTCTTTTCACTGTTTCTGACAATGCTTCTGAGCTCAATCTAAAGATAATGGAAAAGGACAACTATAGTGCTGATGATAATCTTGGAGAAGTAATAATTCCTTTAGAGACAGTGATTCAAGAGGGTAGCGTTCCAGAGAATTCTTACAAACTTGTGAAGGATGAAAAATATTGTGGAGAGGTTAAGGTGGCTCTCACTTTTACACCTGAGAGAAACTATGAACGGAGTTACAATCAAGAGGAGGAGACTGGTGGATGGAAACAATCGGCTAGGGACTATTGA

Protein sequence

>MsG0880043261.01.T01

MYFMNSINFLSTPLIKVKECPREFSSDAASIDPYVILTYRAQEHKSTVQEGAGSNPQWNETFLFTVSDNASELNLKIMEKDNYSADDNLGEVIIPLETVIQEGSVPENSYKLVKDEKYCGEVKVALTFTPERNYERSYNQEEETGGWKQSARDY*