AlfalfaGEDB | MsG0380016651.01

M. sativa cultivar ZhongmuNo.1 / MsG0380016651.01

KEGG: K12890
GO: GO:0003676
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016651.01.T01	OIV96933.1	70.43	186	12	2	1	143	1	186	2.53E-65	210

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016651.01.T01	A2RVS6	59.5	200	23	3	1	143	1	199	9.28E-57	183

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016651.01.T01	A0A4P1QX98	70.430	186	12	2	1	143	1	186	1.21e-65	210

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0380016651.01	MsG0480022789.01	0.818831	1.596417e-52	1.208026e-49
MsG0380016651.01	MsG0480023399.01	0.820078	8.295067e-53	6.498850e-50
MsG0380016651.01	MsG0880045072.01	0.803681	3.104227e-49	1.569669e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016651.01.T01	MTR_3g092580	71.000	200	1	2	1	143	108	307	5.69e-67	209
MsG0380016651.01.T01	MTR_8g058530	47.030	202	57	4	1	156	1	198	1.43e-42	144
MsG0380016651.01.T01	MTR_7g108810	47.030	202	57	4	1	156	102	299	1.17e-41	144
MsG0380016651.01.T01	MTR_1g083400	46.231	199	38	3	1	142	32	218	2.78e-40	138
MsG0380016651.01.T01	MTR_7g112760	45.283	212	42	4	1	155	1	195	4.21e-40	136
MsG0380016651.01.T01	MTR_7g112760	45.283	212	42	4	1	155	1	195	9.91e-40	136
MsG0380016651.01.T01	MTR_1g088180	43.902	205	67	4	1	158	1	204	5.03e-37	133

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016651.01.T01	AT3G49430	59.500	200	23	3	1	143	1	199	7.64e-58	183
MsG0380016651.01.T01	AT3G49430	59.500	200	23	3	1	143	1	199	9.46e-58	183
MsG0380016651.01.T01	AT3G49430	59.500	200	23	3	1	143	1	199	9.46e-58	183
MsG0380016651.01.T01	AT3G49430	59.500	200	23	3	1	143	1	199	9.46e-58	183
MsG0380016651.01.T01	AT3G49430	59.500	200	23	3	1	143	1	199	9.46e-58	183
MsG0380016651.01.T01	AT3G49430	59.500	200	23	3	1	143	1	199	9.46e-58	183
MsG0380016651.01.T01	AT3G49430	59.500	200	23	3	1	143	1	199	9.46e-58	183
MsG0380016651.01.T01	AT1G09140	47.980	198	55	6	1	154	1	194	1.59e-42	142
MsG0380016651.01.T01	AT1G09140	47.980	198	55	6	1	154	1	194	3.69e-42	142
MsG0380016651.01.T01	AT1G09140	47.980	198	55	6	1	154	1	194	3.86e-42	142

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Find 93 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTCTCCAAATGCTAA+TGG	0.420292	3:+86141015	None:intergenic
AAATAAGCGTTTGTTTAGAG+TGG	0.502378	3:-86140974	MsG0380016651.01.T01:three_prime_UTR
AAGAACAGTCTAATAAAGCA+GGG	0.626782	3:+86140923	None:intergenic
AAGCGTTTGTTTAGAGTGGT+TGG	0.451223	3:-86140970	MsG0380016651.01.T01:three_prime_UTR
AATGGCGAGAGACACCAAAA+CGG	0.624683	3:+86143757	None:intergenic
AATTGAAGATCTGTTCTACA+AGG	0.526628	3:-86144764	MsG0380016651.01.T01:intron
ACACACCTCGAAATTCAGAA+TGG	0.647364	3:+86143739	None:intergenic
ACACCGAGTTTAGAAATCCT+TGG	0.480051	3:-86142428	MsG0380016651.01.T01:CDS
ACTTCAGTTTCGCTGCGATT+GGG	0.471440	3:-86146026	MsG0380016651.01.T01:five_prime_UTR
ACTTTGATGGTTGTCGATTA+AGG	0.211961	3:-86143964	MsG0380016651.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAATCCATGCTTCATT+AGG	+	Chr3:86145584-86145603	None:intergenic	30.0%
AAAATGTCTCCAAATGCTAA+TGG	+	Chr3:86145889-86145908	None:intergenic	30.0%
AAACAAAGACACGACAAATA+AGG	+	Chr3:86144682-86144701	None:intergenic	30.0%
AAACATAGGGAATATAGAGT+GGG	-	Chr3:86141676-86141695	MsG0380016651.01.T01:intron	30.0%
AAACATGAAGATAAGAGTCA+TGG	+	Chr3:86143391-86143410	None:intergenic	30.0%
AAATAAGCGTTTGTTTAGAG+TGG	-	Chr3:86145927-86145946	MsG0380016651.01.T01:intron	30.0%
AAATAGAGAAGTAGAAATGC+AGG	+	Chr3:86142322-86142341	None:intergenic	30.0%
AACAAAGACACGACAAATAA+GGG	+	Chr3:86144681-86144700	None:intergenic	30.0%
AAGAACAGTCTAATAAAGCA+GGG	+	Chr3:86145981-86146000	None:intergenic	30.0%
AATAACTTTATATACCTGGC+AGG	+	Chr3:86145081-86145100	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	86140814	86146109	86140814	ID=MsG0380016651.01;Name=MsG0380016651.01
Chr3	mRNA	86140814	86146109	86140814	ID=MsG0380016651.01.T01;Parent=MsG0380016651.01;Name=MsG0380016651.01.T01;_AED=0.38;_eAED=0.38;_QI=270\|0.62\|1\|1\|0.75\|0.66\|9\|454\|179
Chr3	exon	86140814	86141313	86140814	ID=MsG0380016651.01.T01:exon:22100;Parent=MsG0380016651.01.T01
Chr3	exon	86142023	86142102	86142023	ID=MsG0380016651.01.T01:exon:22099;Parent=MsG0380016651.01.T01
Chr3	exon	86142410	86142466	86142410	ID=MsG0380016651.01.T01:exon:22098;Parent=MsG0380016651.01.T01
Chr3	exon	86142563	86142612	86142563	ID=MsG0380016651.01.T01:exon:22097;Parent=MsG0380016651.01.T01
Chr3	exon	86143745	86143889	86143745	ID=MsG0380016651.01.T01:exon:22096;Parent=MsG0380016651.01.T01
Chr3	exon	86143964	86144038	86143964	ID=MsG0380016651.01.T01:exon:22095;Parent=MsG0380016651.01.T01
Chr3	exon	86144765	86144879	86144765	ID=MsG0380016651.01.T01:exon:22094;Parent=MsG0380016651.01.T01
Chr3	exon	86145022	86145157	86145022	ID=MsG0380016651.01.T01:exon:22093;Parent=MsG0380016651.01.T01
Chr3	exon	86146004	86146109	86146004	ID=MsG0380016651.01.T01:exon:22092;Parent=MsG0380016651.01.T01
Chr3	five_prime_UTR	86146004	86146109	86146004	ID=MsG0380016651.01.T01:five_prime_utr;Parent=MsG0380016651.01.T01
Chr3	five_prime_UTR	86145022	86145157	86145022	ID=MsG0380016651.01.T01:five_prime_utr;Parent=MsG0380016651.01.T01
Chr3	five_prime_UTR	86144852	86144879	86144852	ID=MsG0380016651.01.T01:five_prime_utr;Parent=MsG0380016651.01.T01
Chr3	CDS	86144765	86144851	86144765	ID=MsG0380016651.01.T01:cds;Parent=MsG0380016651.01.T01
Chr3	CDS	86143964	86144038	86143964	ID=MsG0380016651.01.T01:cds;Parent=MsG0380016651.01.T01
Chr3	CDS	86143745	86143889	86143745	ID=MsG0380016651.01.T01:cds;Parent=MsG0380016651.01.T01
Chr3	CDS	86142563	86142612	86142563	ID=MsG0380016651.01.T01:cds;Parent=MsG0380016651.01.T01
Chr3	CDS	86142410	86142466	86142410	ID=MsG0380016651.01.T01:cds;Parent=MsG0380016651.01.T01
Chr3	CDS	86142023	86142102	86142023	ID=MsG0380016651.01.T01:cds;Parent=MsG0380016651.01.T01
Chr3	CDS	86141268	86141313	86141268	ID=MsG0380016651.01.T01:cds;Parent=MsG0380016651.01.T01
Chr3	three_prime_UTR	86140814	86141267	86140814	ID=MsG0380016651.01.T01:three_prime_utr;Parent=MsG0380016651.01.T01

Gene Sequence

>MsG0380016651.01.T01

ATGAGTAGTCGCTTTTCTCGCACAATCTATGTTGGCAACCTGCCCGCTGATATAAGAGAATCAGAAATTGAAGATCTGTTCTACAAGTTTGACAATGCTCGAGATGCTGAAGATGCAATTCGGGGTCGTGATGGTTACAACTTTGATGGTTGTCGATTAAGGGTGGAGCTTGCCCATGGAGGCAGAGGGCCATCATCAAGTGACAGACGTGGGTATGGTGGTGGTGGCGGCGGTGGTGGCAGAGGCGGCGGCGGTGACGGTGCTGGTGGGGGCCGTTTTGGTGTCTCTCGCCATTCTGAATTTCGAGGGACTTTTGGCCTTGTTGATTACACTAATTATGATGACATGAAATATGCTATTCGGAAACTGGATGACACCGAGTTTAGAAATCCTTGGGCGAGATCATATATTCGGGTGAGGAAGTATGAGAGCAGTCGTTCAAGGAGCCGCAGCAGAAGCCCCAGCAGGAGCAGAAGTCCGAAAAGGGCCAGAAGGTTCTGTCTGGTAGCGGTTGATTTGCTGACAAATGCTGATCTCTAA

Protein sequence

>MsG0380016651.01.T01

MSSRFSRTIYVGNLPADIRESEIEDLFYKFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGRGGGGDGAGGGRFGVSRHSEFRGTFGLVDYTNYDDMKYAIRKLDDTEFRNPWARSYIRVRKYESSRSRSRSRSPSRSRSPKRARRFCLVAVDLLTNADL*