AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023399.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023399.01.T01 MTR_8g092200 100.000 131 0 0 1 131 1 131 5.45e-95 270
MsG0480023399.01.T01 MTR_8g058537 36.111 72 45 1 7 77 2 73 1.12e-12 61.2
MsG0480023399.01.T01 MTR_8g058420 36.111 72 45 1 7 77 2 73 1.12e-12 61.2
MsG0480023399.01.T01 MTR_8g091620 36.111 72 45 1 7 77 2 73 1.45e-12 61.2
MsG0480023399.01.T01 MTR_7g108700 36.111 72 45 1 7 77 2 73 1.65e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023399.01.T01 AT1G20580 84.091 132 19 2 1 131 1 131 1.14e-71 211
MsG0480023399.01.T01 AT1G76300 77.863 131 26 2 1 131 1 128 7.85e-69 203
MsG0480023399.01.T01 AT5G27720 36.111 72 45 1 7 77 2 73 2.56e-12 60.1

Find 54 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGGCCGTGGAGCTCCGCC+TGG 0.291361 4:-84691099 MsG0480023399.01.T01:CDS
ATACTAATGTGACAGGTTTA+TGG 0.302035 4:-84691463 MsG0480023399.01.T01:intron
TGATAGAAAGAAATTTGAAT+TGG 0.341162 4:-84690981 MsG0480023399.01.T01:three_prime_UTR
AAAGAAGATGAGTCGTAGTT+TGG 0.344374 4:-84692854 MsG0480023399.01.T01:exon
GCCTGTATTGTGTGCTTGGC+TGG 0.354352 4:-84690912 MsG0480023399.01.T01:three_prime_UTR
TGATTGAGTGTGAGGATAAC+TGG 0.357866 4:-84692747 MsG0480023399.01.T01:CDS
GAGTCGTAGTTTGGGAATTC+CGG 0.364238 4:-84692845 MsG0480023399.01.T01:CDS
CCGTGGAGCTCCGCCTGGGA+GGG 0.368506 4:-84691094 MsG0480023399.01.T01:CDS
CGTGGAGCTCCGCCTGGGAG+GGG 0.398677 4:-84691093 MsG0480023399.01.T01:CDS
AGTTTGACAGCCCTCAAAAC+TGG 0.411974 4:-84690813 MsG0480023399.01.T01:three_prime_UTR
TAGGCTCAAGCTGCTGGCCG+TGG 0.412883 4:-84691111 MsG0480023399.01.T01:CDS
AAGAAGATGAGTCGTAGTTT+GGG 0.420399 4:-84692853 MsG0480023399.01.T01:exon
GCCGTGGAGCTCCGCCTGGG+AGG 0.444968 4:-84691095 MsG0480023399.01.T01:CDS
CCTGTGTAGGCTCAAGCTGC+TGG 0.451467 4:-84691117 MsG0480023399.01.T01:intron
CTTGAGCATGTATTTATTCG+AGG 0.458500 4:-84691599 MsG0480023399.01.T01:CDS
GCCTCGTGGAGGAGCTTCAC+CGG 0.468346 4:+84692826 None:intergenic
CTGGCCGTGGAGCTCCGCCT+GGG 0.468800 4:-84691098 MsG0480023399.01.T01:CDS
TTATTCGAGGTAGCAAAGTC+AGG 0.472481 4:-84691586 MsG0480023399.01.T01:intron
TGCATCTAAACGCTTGAACA+TGG 0.482856 4:+84691413 None:intergenic
GGAGCGTTCTTCAGCATGTC+GGG 0.484052 4:+84691435 None:intergenic
GCATCGCTTGGTGTTGGTAG+AGG 0.487013 4:-84691287 MsG0480023399.01.T01:CDS
ACCAGCCAAGCACACAATAC+AGG 0.498191 4:+84690911 None:intergenic
AAGCTCCTCCACGAGGCCTC+CGG 0.500533 4:-84692820 MsG0480023399.01.T01:CDS
AAGGGCAAGGGTGCATCGCT+TGG 0.512282 4:-84691299 MsG0480023399.01.T01:CDS
CCCTCCCAGGCGGAGCTCCA+CGG 0.537318 4:+84691094 None:intergenic
AAGGGTGCATCGCTTGGTGT+TGG 0.544000 4:-84691293 MsG0480023399.01.T01:CDS
AAGCATCACTTACACTGCTA+AGG 0.553810 4:-84692710 MsG0480023399.01.T01:intron
GCGTTTAGATGCAAGAATCA+AGG 0.557683 4:-84691403 MsG0480023399.01.T01:intron
CTGAATATCTTGAAGGGCAA+GGG 0.558094 4:-84691311 MsG0480023399.01.T01:intron
AATGATGATCACCTCCTCAC+TGG 0.558350 4:+84691063 None:intergenic
CTCCACCGTGACGACGTGGC+CGG 0.561230 4:+84692801 None:intergenic
GCATCTAAACGCTTGAACAT+GGG 0.565911 4:+84691414 None:intergenic
ACTGGTGGTACACCCCTCCC+AGG 0.566465 4:+84691081 None:intergenic
AGCAGTTGCAATGCGAGCAA+AGG 0.568696 4:-84691261 MsG0480023399.01.T01:intron
GGGAGCGTTCTTCAGCATGT+CGG 0.573337 4:+84691434 None:intergenic
CCCTCAAAACTGGTTTAAGA+CGG 0.578521 4:-84690803 MsG0480023399.01.T01:three_prime_UTR
TGTAAGTGATGCTTTCGAGT+TGG 0.586493 4:+84692719 None:intergenic
GGCCTCCGGCCACGTCGTCA+CGG 0.591892 4:-84692806 MsG0480023399.01.T01:CDS
CGACGTGGCCGGAGGCCTCG+TGG 0.593417 4:+84692812 None:intergenic
CACCGTGACGACGTGGCCGG+AGG 0.597159 4:+84692804 None:intergenic
ATTCACAGACTACTTCTCAC+TGG 0.604652 4:-84690947 MsG0480023399.01.T01:three_prime_UTR
AGGCAACATGATTGAGTGTG+AGG 0.608133 4:-84692755 MsG0480023399.01.T01:CDS
GTCACGGTGGAGCTCAAGAG+CGG 0.621698 4:-84692790 MsG0480023399.01.T01:CDS
GGGGTGTACCACCAGTGAGG+AGG 0.633056 4:-84691074 MsG0480023399.01.T01:CDS
AGTTATTATGAGTTTCGTGA+GGG 0.633783 4:-84690837 MsG0480023399.01.T01:three_prime_UTR
AAGTTATTATGAGTTTCGTG+AGG 0.640457 4:-84690838 MsG0480023399.01.T01:three_prime_UTR
GGAGGGGTGTACCACCAGTG+AGG 0.654099 4:-84691077 MsG0480023399.01.T01:CDS
GATGATCACCTCCTCACTGG+TGG 0.658723 4:+84691066 None:intergenic
TGAGCTCCACCGTGACGACG+TGG 0.674804 4:+84692797 None:intergenic
CGTGGCCGGAGGCCTCGTGG+AGG 0.675507 4:+84692815 None:intergenic
AAGAGCGGCGAACTCTACAG+AGG 0.686815 4:-84692775 MsG0480023399.01.T01:CDS
TCCGGTGAAGCTCCTCCACG+AGG 0.694574 4:-84692827 MsG0480023399.01.T01:CDS
GGTGGTACACCCCTCCCAGG+CGG 0.697960 4:+84691084 None:intergenic
CTCCGGCCACGTCGTCACGG+TGG 0.732137 4:-84692803 MsG0480023399.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAACTAGGAATAAAAA+AGG + Chr4:84692483-84692502 None:intergenic 15.0%
!! TAGATGAAAATAAATAAACT+AGG + Chr4:84692494-84692513 None:intergenic 15.0%
!!! CTTTTAAAATTAGTATATGA+CGG - Chr4:84692848-84692867 MsG0480023399.01.T01:CDS 15.0%
!!! TTAATCACTTTTTAATAAGA+AGG + Chr4:84692337-84692356 None:intergenic 15.0%
!! AAGAAATTAACAAGTTTCAT+AGG + Chr4:84691975-84691994 None:intergenic 20.0%
!! AATAAATTAACAGTAAGACA+TGG - Chr4:84691840-84691859 MsG0480023399.01.T01:intron 20.0%
!! ATATCATTAGAGAAAAAAGT+AGG - Chr4:84691257-84691276 MsG0480023399.01.T01:intron 20.0%
!! GAAAAAAAAAGTTACAAAAC+AGG + Chr4:84691439-84691458 None:intergenic 20.0%
!! GTGATTAATTACTCTATATT+TGG - Chr4:84692349-84692368 MsG0480023399.01.T01:intron 20.0%
!! TATCATTAGAGAAAAAAGTA+GGG - Chr4:84691258-84691277 MsG0480023399.01.T01:intron 20.0%
!! TGATAGAAAGAAATTTGAAT+TGG - Chr4:84692731-84692750 MsG0480023399.01.T01:CDS 20.0%
!!! ACAAGTAATTTTGTTAAAGA+GGG - Chr4:84691323-84691342 MsG0480023399.01.T01:intron 20.0%
!!! CATGTCAATTCTTATTTATA+AGG - Chr4:84691662-84691681 MsG0480023399.01.T01:intron 20.0%
!!! CTTTCTAGTATTAACTAATT+TGG - Chr4:84691220-84691239 MsG0480023399.01.T01:intron 20.0%
!!! TAACGTAATTATTTCAAGTA+AGG - Chr4:84692181-84692200 MsG0480023399.01.T01:intron 20.0%
!!! TACTTTTTTCTCTAATGATA+TGG + Chr4:84691258-84691277 None:intergenic 20.0%
! AAAAAACTGTGTATTAGAAG+AGG - Chr4:84690790-84690809 MsG0480023399.01.T01:three_prime_UTR 25.0%
! TAATCCATTAAGAGAGATTT+GGG - Chr4:84691789-84691808 MsG0480023399.01.T01:intron 25.0%
! TCTACAATAGTTGCTAATAA+TGG - Chr4:84692057-84692076 MsG0480023399.01.T01:intron 25.0%
! TTAATCCATTAAGAGAGATT+TGG - Chr4:84691788-84691807 MsG0480023399.01.T01:intron 25.0%
! TTGAAAAAGATCGTGAATTA+GGG - Chr4:84690818-84690837 MsG0480023399.01.T01:three_prime_UTR 25.0%
!! AGAAAAAAGTAGGGATTTTT+GGG - Chr4:84691267-84691286 MsG0480023399.01.T01:CDS 25.0%
!! AGGGTTTATGTTGTATTTTA+GGG - Chr4:84691164-84691183 MsG0480023399.01.T01:intron 25.0%
!! CAAAATTACTTGTGCTTTTA+TGG + Chr4:84691316-84691335 None:intergenic 25.0%
!! CACAAGTAATTTTGTTAAAG+AGG - Chr4:84691322-84691341 MsG0480023399.01.T01:intron 25.0%
!! TAGGGTTTATGTTGTATTTT+AGG - Chr4:84691163-84691182 MsG0480023399.01.T01:intron 25.0%
!! TATAGCTTAAAGCTTTTGAT+AGG - Chr4:84691533-84691552 MsG0480023399.01.T01:intron 25.0%
!! TTTTGTCTGAATATCTTGAA+GGG - Chr4:84692395-84692414 MsG0480023399.01.T01:intron 25.0%
!! TTTTTGTCTGAATATCTTGA+AGG - Chr4:84692394-84692413 MsG0480023399.01.T01:intron 25.0%
!!! AAATCTCTCTTAATGGATTA+AGG + Chr4:84691789-84691808 None:intergenic 25.0%
!!! ATCAAAAGCTTTAAGCTATA+TGG + Chr4:84691533-84691552 None:intergenic 25.0%
!!! ATTTATTTTCATCTAGCCTT+GGG - Chr4:84692499-84692518 MsG0480023399.01.T01:intron 25.0%
!!! TATTTATTTTCATCTAGCCT+TGG - Chr4:84692498-84692517 MsG0480023399.01.T01:intron 25.0%
!!! TTACTTTTTCCAAGATGAAA+GGG + Chr4:84691619-84691638 None:intergenic 25.0%
!!! TTTACTTTTTCCAAGATGAA+AGG + Chr4:84691620-84691639 None:intergenic 25.0%
!!! TTTTTTGTAGAATTGAGTTG+TGG - Chr4:84691081-84691100 MsG0480023399.01.T01:CDS 25.0%
AAGTTATTATGAGTTTCGTG+AGG - Chr4:84692874-84692893 MsG0480023399.01.T01:five_prime_UTR 30.0%
AGTTATTATGAGTTTCGTGA+GGG - Chr4:84692875-84692894 MsG0480023399.01.T01:five_prime_UTR 30.0%
ATACTAATGTGACAGGTTTA+TGG - Chr4:84692249-84692268 MsG0480023399.01.T01:intron 30.0%
GTTGAAAAAGATCGTGAATT+AGG - Chr4:84690817-84690836 MsG0480023399.01.T01:three_prime_UTR 30.0%
TAAATCGACCCATAAAAGTT+AGG - Chr4:84691352-84691371 MsG0480023399.01.T01:intron 30.0%
TAGGGATCTTTGAATACTTA+TGG - Chr4:84691182-84691201 MsG0480023399.01.T01:intron 30.0%
TATCAAACTAAGCAATAAGC+TGG + Chr4:84691496-84691515 None:intergenic 30.0%
TGGATTGAATTTGTAGTGTT+TGG + Chr4:84691708-84691727 None:intergenic 30.0%
TTACACCACATTTGTAACAA+CGG + Chr4:84692563-84692582 None:intergenic 30.0%
! AAACAGAGCCTAACTTTTAT+GGG + Chr4:84691363-84691382 None:intergenic 30.0%
! AATCTCTATTTTCTGTCTGT+TGG - Chr4:84692677-84692696 MsG0480023399.01.T01:intron 30.0%
! ATTGAACAAACATTTTCCCA+AGG + Chr4:84692518-84692537 None:intergenic 30.0%
! GAGAAAAAAGTAGGGATTTT+TGG - Chr4:84691266-84691285 MsG0480023399.01.T01:CDS 30.0%
! TGTATATCGCATTTTCTGTA+AGG - Chr4:84692210-84692229 MsG0480023399.01.T01:intron 30.0%
!! GAATTAGGGTTTTAACAAAG+AGG - Chr4:84690832-84690851 MsG0480023399.01.T01:three_prime_UTR 30.0%
!! TAATGGATTAAGGCTTTGTT+TGG + Chr4:84691779-84691798 None:intergenic 30.0%
!!! ATACTTATGGTTTTGAACAC+TGG - Chr4:84691195-84691214 MsG0480023399.01.T01:intron 30.0%
!!! GTTACAAAACAGGTCTTTTT+TGG + Chr4:84691429-84691448 None:intergenic 30.0%
!!! TACTTTTTCCAAGATGAAAG+GGG + Chr4:84691618-84691637 None:intergenic 30.0%
AAAGAAGATGAGTCGTAGTT+TGG - Chr4:84690858-84690877 MsG0480023399.01.T01:three_prime_UTR 35.0%
AAGAAGATGAGTCGTAGTTT+GGG - Chr4:84690859-84690878 MsG0480023399.01.T01:three_prime_UTR 35.0%
ACAACCCAAATCTCTCTTAA+TGG + Chr4:84691796-84691815 None:intergenic 35.0%
AGTTTCATAGGAGAGAAAGA+TGG + Chr4:84691963-84691982 None:intergenic 35.0%
ATAATGGCTAAATCTTCTGC+AGG - Chr4:84692073-84692092 MsG0480023399.01.T01:intron 35.0%
CATAAAAGTTAGGCTCTGTT+TGG - Chr4:84691362-84691381 MsG0480023399.01.T01:intron 35.0%
CGTTGTGATATTCGCAAATT+TGG - Chr4:84691123-84691142 MsG0480023399.01.T01:intron 35.0%
CTTGAGCATGTATTTATTCG+AGG - Chr4:84692113-84692132 MsG0480023399.01.T01:intron 35.0%
GAAAAAGTCTTTGGTTGTTG+TGG - Chr4:84691899-84691918 MsG0480023399.01.T01:intron 35.0%
TGAAGTGATACTAATGTGAC+AGG - Chr4:84692242-84692261 MsG0480023399.01.T01:intron 35.0%
! CAAACAGAGCCTAACTTTTA+TGG + Chr4:84691364-84691383 None:intergenic 35.0%
! GTAGAATTTTGTCTTAGGTG+TGG - Chr4:84692822-84692841 MsG0480023399.01.T01:CDS 35.0%
!! AAAAAGTAGGGATTTTTGGG+TGG - Chr4:84691270-84691289 MsG0480023399.01.T01:CDS 35.0%
!! TAAGAGAGATTTGGGTTGTA+TGG - Chr4:84691797-84691816 MsG0480023399.01.T01:intron 35.0%
!! TTCAATGACTTGCTAGTTGA+AGG - Chr4:84692532-84692551 MsG0480023399.01.T01:intron 35.0%
AAGCATCACTTACACTGCTA+AGG - Chr4:84691002-84691021 MsG0480023399.01.T01:three_prime_UTR 40.0%
ACCACATTTGTAACAACGGT+AGG + Chr4:84692559-84692578 None:intergenic 40.0%
ACCTACCGTTGTTACAAATG+TGG - Chr4:84692555-84692574 MsG0480023399.01.T01:intron 40.0%
ACCTCAAATGTTTCCTGTGT+AGG - Chr4:84692582-84692601 MsG0480023399.01.T01:intron 40.0%
ATTCACAGACTACTTCTCAC+TGG - Chr4:84692765-84692784 MsG0480023399.01.T01:CDS 40.0%
ATTCGCAAATTTGGCAGATG+TGG - Chr4:84691132-84691151 MsG0480023399.01.T01:intron 40.0%
CAAAGTTACCCCTTTCATCT+TGG - Chr4:84691607-84691626 MsG0480023399.01.T01:CDS 40.0%
CTAGCTTATAGCAGATAAGC+TGG + Chr4:84691731-84691750 None:intergenic 40.0%
CTGAATATCTTGAAGGGCAA+GGG - Chr4:84692401-84692420 MsG0480023399.01.T01:intron 40.0%
GCATCTAAACGCTTGAACAT+GGG + Chr4:84692301-84692320 None:intergenic 40.0%
GCGTTTAGATGCAAGAATCA+AGG - Chr4:84692309-84692328 MsG0480023399.01.T01:intron 40.0%
TCTGAATATCTTGAAGGGCA+AGG - Chr4:84692400-84692419 MsG0480023399.01.T01:intron 40.0%
TCTTGGTGGGAAAAAGTCTT+TGG - Chr4:84691890-84691909 MsG0480023399.01.T01:intron 40.0%
TGATTGAGTGTGAGGATAAC+TGG - Chr4:84690965-84690984 MsG0480023399.01.T01:three_prime_UTR 40.0%
TGCATCTAAACGCTTGAACA+TGG + Chr4:84692302-84692321 None:intergenic 40.0%
TTATTCGAGGTAGCAAAGTC+AGG - Chr4:84692126-84692145 MsG0480023399.01.T01:intron 40.0%
! CCCTCAAAACTGGTTTAAGA+CGG - Chr4:84692909-84692928 MsG0480023399.01.T01:five_prime_UTR 40.0%
! CTTTTTCCCACCAAGATAGA+CGG + Chr4:84691886-84691905 None:intergenic 40.0%
! GGCTGGTAGAATTTTGTCTT+AGG - Chr4:84692817-84692836 MsG0480023399.01.T01:CDS 40.0%
! TCCGTCTTAAACCAGTTTTG+AGG + Chr4:84692913-84692932 None:intergenic 40.0%
! TGTAAGTGATGCTTTCGAGT+TGG + Chr4:84690996-84691015 None:intergenic 40.0%
! TTTTGCCTGTATTGTGTGCT+TGG - Chr4:84692796-84692815 MsG0480023399.01.T01:CDS 40.0%
! TTTTTCCCACCAAGATAGAC+GGG + Chr4:84691885-84691904 None:intergenic 40.0%
!! CCGTCTTAAACCAGTTTTGA+GGG + Chr4:84692912-84692931 None:intergenic 40.0%
!!! TAGGGATTTTTGGGTGGTTT+CGG - Chr4:84691276-84691295 MsG0480023399.01.T01:CDS 40.0%
AAATTTGGCAGATGTGGAGC+GGG - Chr4:84691138-84691157 MsG0480023399.01.T01:intron 45.0%
AATGATGATCACCTCCTCAC+TGG + Chr4:84692652-84692671 None:intergenic 45.0%
AGGCAACATGATTGAGTGTG+AGG - Chr4:84690957-84690976 MsG0480023399.01.T01:three_prime_UTR 45.0%
AGTTTGACAGCCCTCAAAAC+TGG - Chr4:84692899-84692918 MsG0480023399.01.T01:five_prime_UTR 45.0%
CAAATTTGGCAGATGTGGAG+CGG - Chr4:84691137-84691156 MsG0480023399.01.T01:intron 45.0%
GAGTCGTAGTTTGGGAATTC+CGG - Chr4:84690867-84690886 MsG0480023399.01.T01:three_prime_UTR 45.0%
GCCTACACAGGAAACATTTG+AGG + Chr4:84692586-84692605 None:intergenic 45.0%
GCTTATAGCAGATAAGCTGG+TGG + Chr4:84691728-84691747 None:intergenic 45.0%
TGGCTAAATCTTCTGCAGGA+TGG - Chr4:84692077-84692096 MsG0480023399.01.T01:intron 45.0%
AACGATAAACCCAGCCACGA+CGG + Chr4:84691107-84691126 None:intergenic 50.0%
ACCAGCCAAGCACACAATAC+AGG + Chr4:84692804-84692823 None:intergenic 50.0%
AGCAGTTGCAATGCGAGCAA+AGG - Chr4:84692451-84692470 MsG0480023399.01.T01:intron 50.0%
ATGTAGCCCGTCTATCTTGG+TGG - Chr4:84691876-84691895 MsG0480023399.01.T01:intron 50.0%
CTGATGTAGCCCGTCTATCT+TGG - Chr4:84691873-84691892 MsG0480023399.01.T01:intron 50.0%
TGTAGCCCGTCTATCTTGGT+GGG - Chr4:84691877-84691896 MsG0480023399.01.T01:intron 50.0%
AAGAGCGGCGAACTCTACAG+AGG - Chr4:84690937-84690956 MsG0480023399.01.T01:three_prime_UTR 55.0%
GATGATCACCTCCTCACTGG+TGG + Chr4:84692649-84692668 None:intergenic 55.0%
GCAGATGTGGAGCGGGATTA+GGG - Chr4:84691145-84691164 MsG0480023399.01.T01:intron 55.0%
GCCTGTATTGTGTGCTTGGC+TGG - Chr4:84692800-84692819 MsG0480023399.01.T01:CDS 55.0%
! GAATTGAGTTGTGGCCGTCG+TGG - Chr4:84691090-84691109 MsG0480023399.01.T01:CDS 55.0%
! GGAGCGTTCTTCAGCATGTC+GGG + Chr4:84692280-84692299 None:intergenic 55.0%
!! AAGGGTGCATCGCTTGGTGT+TGG - Chr4:84692419-84692438 MsG0480023399.01.T01:intron 55.0%
!! GCATCGCTTGGTGTTGGTAG+AGG - Chr4:84692425-84692444 MsG0480023399.01.T01:intron 55.0%
!! GGGAGCGTTCTTCAGCATGT+CGG + Chr4:84692281-84692300 None:intergenic 55.0%
CCAGCAGCTTGAGCCTACAC+AGG + Chr4:84692598-84692617 None:intergenic 60.0%
CCTGTGTAGGCTCAAGCTGC+TGG - Chr4:84692595-84692614 MsG0480023399.01.T01:intron 60.0%
GGCAGATGTGGAGCGGGATT+AGG - Chr4:84691144-84691163 MsG0480023399.01.T01:intron 60.0%
GTCACGGTGGAGCTCAAGAG+CGG - Chr4:84690922-84690941 MsG0480023399.01.T01:three_prime_UTR 60.0%
! AAGGGCAAGGGTGCATCGCT+TGG - Chr4:84692413-84692432 MsG0480023399.01.T01:intron 60.0%
AAGCTCCTCCACGAGGCCTC+CGG - Chr4:84690892-84690911 MsG0480023399.01.T01:three_prime_UTR 65.0%
ACTGGTGGTACACCCCTCCC+AGG + Chr4:84692634-84692653 None:intergenic 65.0%
GAGTTGTGGCCGTCGTGGCT+GGG - Chr4:84691095-84691114 MsG0480023399.01.T01:CDS 65.0%
GCCTCGTGGAGGAGCTTCAC+CGG + Chr4:84690889-84690908 None:intergenic 65.0%
GGGGTGTACCACCAGTGAGG+AGG - Chr4:84692638-84692657 MsG0480023399.01.T01:intron 65.0%
TAGGCTCAAGCTGCTGGCCG+TGG - Chr4:84692601-84692620 MsG0480023399.01.T01:intron 65.0%
TCCGGTGAAGCTCCTCCACG+AGG - Chr4:84690885-84690904 MsG0480023399.01.T01:three_prime_UTR 65.0%
TGAGCTCCACCGTGACGACG+TGG + Chr4:84690918-84690937 None:intergenic 65.0%
TGAGTTGTGGCCGTCGTGGC+TGG - Chr4:84691094-84691113 MsG0480023399.01.T01:CDS 65.0%
! GGAGGGGTGTACCACCAGTG+AGG - Chr4:84692635-84692654 MsG0480023399.01.T01:intron 65.0%
CTCCACCGTGACGACGTGGC+CGG + Chr4:84690914-84690933 None:intergenic 70.0%
GGTGGTACACCCCTCCCAGG+CGG + Chr4:84692631-84692650 None:intergenic 70.0%
CACCGTGACGACGTGGCCGG+AGG + Chr4:84690911-84690930 None:intergenic 75.0%
CCCTCCCAGGCGGAGCTCCA+CGG + Chr4:84692621-84692640 None:intergenic 75.0%
CCGTGGAGCTCCGCCTGGGA+GGG - Chr4:84692618-84692637 MsG0480023399.01.T01:intron 75.0%
CGTGGAGCTCCGCCTGGGAG+GGG - Chr4:84692619-84692638 MsG0480023399.01.T01:intron 75.0%
CTCCGGCCACGTCGTCACGG+TGG - Chr4:84690909-84690928 MsG0480023399.01.T01:three_prime_UTR 75.0%
CTGGCCGTGGAGCTCCGCCT+GGG - Chr4:84692614-84692633 MsG0480023399.01.T01:intron 75.0%
GGCCTCCGGCCACGTCGTCA+CGG - Chr4:84690906-84690925 MsG0480023399.01.T01:three_prime_UTR 75.0%
! CGACGTGGCCGGAGGCCTCG+TGG + Chr4:84690903-84690922 None:intergenic 80.0%
! CGTGGCCGGAGGCCTCGTGG+AGG + Chr4:84690900-84690919 None:intergenic 80.0%
! GCCGTGGAGCTCCGCCTGGG+AGG - Chr4:84692617-84692636 MsG0480023399.01.T01:intron 80.0%
! GCTGGCCGTGGAGCTCCGCC+TGG - Chr4:84692613-84692632 MsG0480023399.01.T01:intron 80.0%
Chromosome Type Strat End Strand Name
Chr4 gene 84690765 84692969 84690765 ID=MsG0480023399.01;Name=MsG0480023399.01
Chr4 mRNA 84690765 84692969 84690765 ID=MsG0480023399.01.T01;Parent=MsG0480023399.01;Name=MsG0480023399.01.T01;_AED=0.49;_eAED=0.49;_QI=100|1|1|1|1|1|5|306|131
Chr4 exon 84690765 84691130 84690765 ID=MsG0480023399.01.T01:exon:6180;Parent=MsG0480023399.01.T01
Chr4 exon 84691262 84691318 84691262 ID=MsG0480023399.01.T01:exon:6179;Parent=MsG0480023399.01.T01
Chr4 exon 84691404 84691470 84691404 ID=MsG0480023399.01.T01:exon:6178;Parent=MsG0480023399.01.T01
Chr4 exon 84691587 84691639 84691587 ID=MsG0480023399.01.T01:exon:6177;Parent=MsG0480023399.01.T01
Chr4 exon 84692711 84692969 84692711 ID=MsG0480023399.01.T01:exon:6176;Parent=MsG0480023399.01.T01
Chr4 five_prime_UTR 84692870 84692969 84692870 ID=MsG0480023399.01.T01:five_prime_utr;Parent=MsG0480023399.01.T01
Chr4 CDS 84692711 84692869 84692711 ID=MsG0480023399.01.T01:cds;Parent=MsG0480023399.01.T01
Chr4 CDS 84691587 84691639 84691587 ID=MsG0480023399.01.T01:cds;Parent=MsG0480023399.01.T01
Chr4 CDS 84691404 84691470 84691404 ID=MsG0480023399.01.T01:cds;Parent=MsG0480023399.01.T01
Chr4 CDS 84691262 84691318 84691262 ID=MsG0480023399.01.T01:cds;Parent=MsG0480023399.01.T01
Chr4 CDS 84691071 84691130 84691071 ID=MsG0480023399.01.T01:cds;Parent=MsG0480023399.01.T01
Chr4 three_prime_UTR 84690765 84691070 84690765 ID=MsG0480023399.01.T01:three_prime_utr;Parent=MsG0480023399.01.T01
Gene Sequence

>MsG0480023399.01.T01

ATGAGTCGTAGTTTGGGAATTCCGGTGAAGCTCCTCCACGAGGCCTCCGGCCACGTCGTCACGGTGGAGCTCAAGAGCGGCGAACTCTACAGAGGCAACATGATTGAGTGTGAGGATAACTGGAACTGCCAACTCGAAAGCATCACTTACACTGCTAAGGATGGAAAAACGTCACAACTTGAGCATGTATTTATTCGAGGTAGCAAAGTCAGGTTTATGGTCATACCCGACATGCTGAAGAACGCTCCCATGTTCAAGCGTTTAGATGCAAGAATCAAGGGCAAGGGTGCATCGCTTGGTGTTGGTAGAGGCAGAGCAGTTGCAATGCGAGCAAAGGCTCAAGCTGCTGGCCGTGGAGCTCCGCCTGGGAGGGGTGTACCACCAGTGAGGAGGTGA

Protein sequence

>MsG0480023399.01.T01

MSRSLGIPVKLLHEASGHVVTVELKSGELYRGNMIECEDNWNCQLESITYTAKDGKTSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGAPPGRGVPPVRR*