AlfalfaGEDB | MsG0480022789.01

M. sativa cultivar ZhongmuNo.1 / MsG0480022789.01

KEGG: K02955
GO: GO:0003735 GO:0005840 GO:0006412
PFAM: PF00411

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022789.01.T02	XP_003608501.1	100	151	0	0	1	151	1	151	6.42E-104	303
MsG0480022789.01.T01	XP_003608501.1	100	151	0	0	1	151	1	151	6.42E-104	303

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022789.01.T01	O22584	94.928	138	7	0	3	140	2	139	1.48E-91	265
MsG0480022789.01.T02	O22584	94.928	138	7	0	3	140	2	139	1.48E-91	265

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022789.01.T01	B7FGP1	100.000	151	0	0	1	151	1	151	3.07e-104	303
MsG0480022789.01.T02	B7FGP1	100.000	151	0	0	1	151	1	151	3.07e-104	303

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048933.01	MsG0480022789.01	0.852403	4.723588e-61	9.858790e-58
MsG0180000096.01	MsG0480022789.01	0.842965	1.873697e-58	2.887832e-55
MsG0180000118.01	MsG0480022789.01	0.868120	8.268719e-66	2.957242e-62
MsG0180001829.01	MsG0480022789.01	0.819622	1.054485e-52	8.155866e-50
MsG0180001837.01	MsG0480022789.01	0.877583	5.592450e-69	2.826419e-65
MsG0180003313.01	MsG0480022789.01	0.808589	2.875549e-50	1.650599e-47
MsG0180003729.01	MsG0480022789.01	0.847040	1.486745e-59	2.609083e-56
MsG0180003897.01	MsG0480022789.01	0.865123	7.415804e-65	2.385872e-61
MsG0180004064.01	MsG0480022789.01	0.816919	4.314083e-52	3.097406e-49
MsG0180004607.01	MsG0480022789.01	0.888928	3.817806e-73	3.017193e-69
MsG0180004609.01	MsG0480022789.01	0.866573	2.582875e-65	8.747009e-62
MsG0180004622.01	MsG0480022789.01	0.845936	2.975948e-59	5.040112e-56
MsG0180004625.01	MsG0480022789.01	0.875535	2.853487e-68	1.337183e-64
MsG0180004829.01	MsG0480022789.01	0.819114	1.376319e-52	1.049661e-49
MsG0180005361.01	MsG0480022789.01	0.857436	1.634694e-62	4.034173e-59
MsG0180005366.01	MsG0480022789.01	0.862100	6.438058e-64	1.863049e-60
MsG0180005384.01	MsG0480022789.01	0.838262	3.192775e-57	4.253009e-54
MsG0180006100.01	MsG0480022789.01	0.845043	5.194610e-59	8.548464e-56
MsG0280011234.01	MsG0480022789.01	0.820015	8.574969e-53	6.706132e-50
MsG0280011308.01	MsG0480022789.01	0.863107	3.151495e-64	9.445031e-61
MsG0480018497.01	MsG0480022789.01	-0.810987	8.769521e-51	5.364900e-48
MsG0480019165.01	MsG0480022789.01	0.896413	3.776848e-76	4.081978e-72
MsG0480019632.01	MsG0480022789.01	0.812992	3.206700e-51	2.068901e-48
MsG0480020895.01	MsG0480022789.01	0.862448	5.030529e-64	1.473894e-60
MsG0480020911.01	MsG0480022789.01	0.825242	5.217085e-54	4.728894e-51
MsG0480021279.01	MsG0480022789.01	0.888549	5.348340e-73	4.162220e-69
MsG0480021417.01	MsG0480022789.01	0.805694	1.179875e-49	6.283616e-47
MsG0480021934.01	MsG0480022789.01	-0.811293	7.527029e-51	4.641205e-48
MsG0480022006.01	MsG0480022789.01	0.812553	4.002112e-51	2.552366e-48
MsG0480022041.01	MsG0480022789.01	0.832798	7.694714e-56	8.693152e-53
MsG0480022362.01	MsG0480022789.01	0.807595	4.680695e-50	2.617581e-47
MsG0480022363.01	MsG0480022789.01	0.802746	4.845883e-49	2.392523e-46
MsG0480022789.01	MsG0480023380.01	0.827968	1.166743e-54	1.143968e-51
MsG0480022789.01	MsG0480023467.01	0.864892	8.767779e-65	2.796791e-61
MsG0480022789.01	MsG0480023774.01	0.848723	5.110888e-60	9.467080e-57
MsG0480022789.01	MsG0480023870.01	0.812083	5.068246e-51	3.191709e-48
MsG0480022789.01	MsG0480023931.01	0.827670	1.376175e-54	1.337502e-51
MsG0480022789.01	MsG0480023941.01	0.847837	8.978737e-60	1.616304e-56
MsG0480022789.01	MsG0480023970.01	0.883209	5.443701e-71	3.419048e-67
MsG0480022789.01	MsG0580024059.01	0.898864	3.490976e-77	4.205896e-73
MsG0480022789.01	MsG0580024369.01	0.836908	7.102326e-57	9.077753e-54
MsG0480022789.01	MsG0580024481.01	0.835205	1.921396e-56	2.333336e-53
MsG0480022789.01	MsG0580024540.01	0.845677	3.497308e-59	5.873913e-56
MsG0480022789.01	MsG0580024738.01	0.804838	1.782154e-49	9.284822e-47
MsG0480022789.01	MsG0580025073.01	0.816420	5.580677e-52	3.952332e-49
MsG0480022789.01	MsG0580029702.01	0.849131	3.937148e-60	7.391319e-57
MsG0480022789.01	MsG0580029703.01	0.892192	1.991286e-74	1.801348e-70
MsG0480022789.01	MsG0580030073.01	0.823503	1.337195e-53	1.153531e-50
MsG0480022789.01	MsG0680031763.01	0.879101	1.639985e-69	8.780314e-66
MsG0480022789.01	MsG0680035611.01	0.861112	1.289478e-63	3.607737e-60
MsG0480022789.01	MsG0780038383.01	0.915121	8.567478e-85	2.204044e-80
MsG0480022789.01	MsG0780040782.01	0.866713	2.331554e-65	7.935946e-62
MsG0480022789.01	MsG0780041058.01	0.819501	1.123646e-52	8.662211e-50
MsG0480022789.01	MsG0780041147.01	0.851908	6.531329e-61	1.341772e-57
MsG0480022789.01	MsG0780041460.01	-0.814456	1.526918e-51	1.025039e-48
MsG0480022789.01	MsG0780041461.01	0.816047	6.761317e-52	4.740273e-49
MsG0480022789.01	MsG0780041522.01	0.864340	1.304608e-64	4.081945e-61
MsG0480022789.01	MsG0780041790.01	0.823288	1.501428e-53	1.287276e-50
MsG0480022789.01	MsG0880042125.01	0.862496	4.862870e-64	1.427134e-60
MsG0480022789.01	MsG0880042517.01	0.827665	1.380213e-54	1.341199e-51
MsG0480022789.01	MsG0880043517.01	0.840885	6.639487e-58	9.590020e-55
MsG0480022789.01	MsG0880045072.01	0.819153	1.348446e-52	1.029439e-49
MsG0480022789.01	MsG0880046220.01	0.808085	3.682519e-50	2.086097e-47
MsG0480022789.01	MsG0880046444.01	0.819350	1.216430e-52	9.336867e-50
MsG0480022789.01	MsG0880046486.01	0.823224	1.554189e-53	1.330106e-50
MsG0480022789.01	MsG0880046879.01	0.806455	8.156335e-50	4.429125e-47
MsG0480022789.01	MsG0880047082.01	0.818080	2.361908e-52	1.750508e-49
MsG0480022789.01	MsG0880047779.01	0.802103	6.576191e-49	3.193864e-46
MsG0380015494.01	MsG0480022789.01	0.826243	3.019241e-54	2.815846e-51
MsG0380015857.01	MsG0480022789.01	0.856173	3.848812e-62	9.104293e-59
MsG0380016577.01	MsG0480022789.01	0.816711	4.802999e-52	3.428796e-49
MsG0380016607.01	MsG0480022789.01	0.824051	9.949750e-54	8.716102e-51
MsG0380016622.01	MsG0480022789.01	0.825599	4.292879e-54	3.930988e-51
MsG0380016651.01	MsG0480022789.01	0.818831	1.596417e-52	1.208026e-49
MsG0380016678.01	MsG0480022789.01	0.838516	2.745132e-57	3.685610e-54
MsG0380016733.01	MsG0480022789.01	0.853048	3.091400e-61	6.592115e-58
MsG0380016760.01	MsG0480022789.01	0.811192	7.915554e-51	4.868060e-48
MsG0380017155.01	MsG0480022789.01	0.802236	6.173170e-49	3.008404e-46
MsG0480018084.01	MsG0480022789.01	0.808643	2.799972e-50	1.609467e-47
MsG0480018164.01	MsG0480022789.01	0.836291	1.020047e-56	1.279999e-53
MsG0280006629.01	MsG0480022789.01	0.845785	3.270996e-59	5.513015e-56
MsG0280006664.01	MsG0480022789.01	0.815875	7.388260e-52	5.154941e-49
MsG0280006747.01	MsG0480022789.01	0.841011	6.152914e-58	8.920936e-55
MsG0280006819.01	MsG0480022789.01	0.842705	2.196288e-58	3.357809e-55
MsG0280007055.01	MsG0480022789.01	0.877562	5.688152e-69	2.872544e-65
MsG0280007643.01	MsG0480022789.01	0.811959	5.392102e-51	3.384176e-48
MsG0280007995.01	MsG0480022789.01	0.929289	8.603142e-93	4.767016e-88
MsG0280010495.01	MsG0480022789.01	0.803453	3.461237e-49	1.740007e-46

PPI

Gene1	Gene2	Type
MsG0780039623.01	MsG0480022789.01	PPI
MsG0280007055.01	MsG0480022789.01	PPI
MsG0780039623.01	MsG0480022789.01	PPI
MsG0280007055.01	MsG0480022789.01	PPI
MsG0180001832.01	MsG0480022789.01	PPI
MsG0480022789.01	MsG0480022789.01	PPI
MsG0580024916.01	MsG0480022789.01	PPI
MsG0480022789.01	MsG0480020134.01	PPI
MsG0480022789.01	MsG0480020134.01	PPI
MsG0880047062.01	MsG0480022789.01	PPI
MsG0480022789.01	MsG0880047038.01	PPI
MsG0580024916.01	MsG0480022789.01	PPI
MsG0180001832.01	MsG0480022789.01	PPI
MsG0880047062.01	MsG0480022789.01	PPI
MsG0880047038.01	MsG0480022789.01	PPI

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022789.01.T02	MTR_4g096790	100.000	151	0	1	151	1	151	7.77e-108	303
MsG0480022789.01.T02	MTR_2g019670	98.675	151	2	1	151	1	151	1.06e-106	301
MsG0480022789.01.T01	MTR_4g096790	100.000	151	0	1	151	1	151	7.77e-108	303
MsG0480022789.01.T01	MTR_2g019670	98.675	151	2	1	151	1	151	1.06e-106	301

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022789.01.T02	AT3G11510	90.580	138	13	0	3	140	2	139	9.43e-91	260
MsG0480022789.01.T02	AT3G52580	89.855	138	14	0	3	140	2	139	3.52e-90	259
MsG0480022789.01.T02	AT2G36160	89.130	138	15	0	3	140	2	139	1.90e-89	257
MsG0480022789.01.T02	ATCG00750	33.613	119	70	2	29	147	28	137	7.73e-12	59.7
MsG0480022789.01.T01	AT3G11510	90.580	138	13	0	3	140	2	139	9.43e-91	260
MsG0480022789.01.T01	AT3G52580	89.855	138	14	0	3	140	2	139	3.52e-90	259
MsG0480022789.01.T01	AT2G36160	89.130	138	15	0	3	140	2	139	1.90e-89	257
MsG0480022789.01.T01	ATCG00750	33.613	119	70	2	29	147	28	137	7.73e-12	59.7

Find 21 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCCTTATGAGTATAACTTAA+TGG	0.218904	4:+76679675	MsG0480022789.01.T01:intron
CTGAGTTTGCTATGGTATTA+TGG	0.243579	4:+76679393	MsG0480022789.01.T01:exon
ATAAACTCATGTAGAACTTT+TGG	0.286970	4:-76679540	None:intergenic
GGGTGCTGTCAGAAGGAATT+GGG	0.306077	4:-76679339	None:intergenic
TTTCTTTCCAGACTGTATTA+TGG	0.314408	4:+76679456	MsG0480022789.01.T01:three_prime_UTR
TACCCCTTCTACCACTCTTT+CGG	0.329294	4:-76679363	None:intergenic
CGGGTGCTGTCAGAAGGAAT+TGG	0.336102	4:-76679340	None:intergenic
GCCATTAAGTTATACTCATA+AGG	0.376078	4:-76679676	None:intergenic
CCCGCCGAAAGAGTGGTAGA+AGG	0.418808	4:+76679359	MsG0480022789.01.T01:CDS
AGAGTGGTAGAAGGGGTAGA+AGG	0.460011	4:+76679368	MsG0480022789.01.T01:CDS
CCCTTCTACCACTCTTTCGG+CGG	0.475876	4:-76679360	None:intergenic
CCATTAAGTTATACTCATAA+GGG	0.478409	4:-76679675	None:intergenic
GAATATGCCATAATACAGTC+TGG	0.507182	4:-76679463	None:intergenic
CCTTCTACCACTCTTTCGGC+GGG	0.512822	4:-76679359	None:intergenic
CCGCCGAAAGAGTGGTAGAA+GGG	0.532687	4:+76679360	MsG0480022789.01.T01:CDS
TTTCGGCGGGTGCTGTCAGA+AGG	0.542032	4:-76679346	None:intergenic
GTTTGCTATGGTATTATGGA+AGG	0.571748	4:+76679397	MsG0480022789.01.T01:three_prime_UTR
AGAAGGCTCTGAGTTTGCTA+TGG	0.575425	4:+76679385	MsG0480022789.01.T01:exon
GACAGCACCCGCCGAAAGAG+TGG	0.584213	4:+76679352	MsG0480022789.01.T01:CDS
GGTGCTGTCAGAAGGAATTG+GGG	0.625333	4:-76679338	None:intergenic
CGCCGAAAGAGTGGTAGAAG+GGG	0.627165	4:+76679361	MsG0480022789.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AAATTATTTATGAATTTTGT+TGG	+	Chr4:76680252-76680271	MsG0480022789.01.T01:intron	10.0%
!!!	AATATGTGAAATTTTAAAAT+TGG	-	Chr4:76679861-76679880	None:intergenic	10.0%
!!!	AATTATTTATGAATTTTGTT+GGG	+	Chr4:76680253-76680272	MsG0480022789.01.T01:intron	10.0%
!!!	ATTTTAAAATTTCACATATT+TGG	+	Chr4:76679861-76679880	MsG0480022789.01.T01:intron	10.0%
!!!	CATAAATAATTTTATTTGTA+AGG	-	Chr4:76680244-76680263	None:intergenic	10.0%
!!	AAAAAATAAGTCAATCAAAA+TGG	-	Chr4:76678023-76678042	None:intergenic	15.0%
!!	AAAAATAAGTCAATCAAAAT+GGG	-	Chr4:76678022-76678041	None:intergenic	15.0%
!!!	ATACCATCTATTTTAAAAAT+TGG	-	Chr4:76680022-76680041	None:intergenic	15.0%
!!!	ATTATTTATGAATTTTGTTG+GGG	+	Chr4:76680254-76680273	MsG0480022789.01.T01:intron	15.0%
!!!	TTTTTTTTTTGTTTTGGTTA+AGG	-	Chr4:76680416-76680435	None:intergenic	15.0%
!!	AAAAAACACACAAAACAATT+TGG	-	Chr4:76677618-76677637	None:intergenic	20.0%
!!	AAAACATAGTAGTGTTTAAA+AGG	-	Chr4:76680155-76680174	None:intergenic	20.0%
!!	AACACCAAATAAAAACATTT+GGG	+	Chr4:76678468-76678487	MsG0480022789.01.T01:intron	20.0%
!!	AACCCATAATGAAAATATTT+GGG	-	Chr4:76678609-76678628	None:intergenic	20.0%
!!	AATTCAATCAAATTAAAAGC+AGG	-	Chr4:76678872-76678891	None:intergenic	20.0%
!!	ACAAAAATTAAAGAGTAAGT+GGG	+	Chr4:76680312-76680331	MsG0480022789.01.T01:intron	20.0%
!!	ACTTATCATGATTAGATATA+TGG	+	Chr4:76677996-76678015	MsG0480022789.01.T01:intron	20.0%
!!	AGATTCAATAAATATGACAA+AGG	+	Chr4:76679994-76680013	MsG0480022789.01.T01:intron	20.0%
!!	ATTCAATCAAATTAAAAGCA+GGG	-	Chr4:76678871-76678890	None:intergenic	20.0%
!!	GAAAAACATTTCAATTTCAA+AGG	-	Chr4:76677394-76677413	None:intergenic	20.0%
!!	GATTCAATAAATATGACAAA+GGG	+	Chr4:76679995-76680014	MsG0480022789.01.T01:intron	20.0%
!!	TACAAAAATTAAAGAGTAAG+TGG	+	Chr4:76680311-76680330	MsG0480022789.01.T01:intron	20.0%
!!	TATACTTACTATTAAACCAA+TGG	+	Chr4:76679704-76679723	MsG0480022789.01.T01:intron	20.0%
!!	TTATTACAGATCAATGTTTA+TGG	-	Chr4:76677305-76677324	None:intergenic	20.0%
!!!	ATGATATATGAAGTTTTGAA+GGG	+	Chr4:76679899-76679918	MsG0480022789.01.T01:intron	20.0%
!!!	TATGATATATGAAGTTTTGA+AGG	+	Chr4:76679898-76679917	MsG0480022789.01.T01:intron	20.0%
!!!	TATTCTTTTAGTCCATTTTT+AGG	+	Chr4:76679080-76679099	MsG0480022789.01.T01:intron	20.0%
!!!	TATTTGATTTACATCTTTTG+CGG	+	Chr4:76679608-76679627	MsG0480022789.01.T01:intron	20.0%
!	AAAAATAAGCTAATCCTAAC+AGG	+	Chr4:76678143-76678162	MsG0480022789.01.T01:intron	25.0%
!	AAAATAGATGGTATGTGAAA+TGG	+	Chr4:76680028-76680047	MsG0480022789.01.T01:intron	25.0%
!	AAAATTGTAAATGGCAAGAA+GGG	-	Chr4:76678405-76678424	None:intergenic	25.0%
!	AATTGCTCCATTATATTATC+AGG	-	Chr4:76678435-76678454	None:intergenic	25.0%
!	AATTTCACTACAACACTTTA+TGG	+	Chr4:76677323-76677342	MsG0480022789.01.T01:intron	25.0%
!	ATAGCTTATATGAAAACACT+TGG	-	Chr4:76678206-76678225	None:intergenic	25.0%
!	ATTGCTCCATTATATTATCA+GGG	-	Chr4:76678434-76678453	None:intergenic	25.0%
!	ATTTGTTCTCAATCCTATAA+AGG	-	Chr4:76680084-76680103	None:intergenic	25.0%
!	CAAAAATTAAAGAGTAAGTG+GGG	+	Chr4:76680313-76680332	MsG0480022789.01.T01:intron	25.0%
!	CAACACCAAATAAAAACATT+TGG	+	Chr4:76678467-76678486	MsG0480022789.01.T01:intron	25.0%
!	CAACCCATAATGAAAATATT+TGG	-	Chr4:76678610-76678629	None:intergenic	25.0%
!	CCATTAAGTTATACTCATAA+GGG	-	Chr4:76679678-76679697	None:intergenic	25.0%
!	CTGCAAATTTAAAAACACAA+AGG	-	Chr4:76679309-76679328	None:intergenic	25.0%
!	GAATACAAAATAAGAGTAAC+TGG	-	Chr4:76679227-76679246	None:intergenic	25.0%
!	TAGCTTATATGAAAACACTT+GGG	-	Chr4:76678205-76678224	None:intergenic	25.0%
!	TCACATATTTGGTCTAAATA+TGG	+	Chr4:76679872-76679891	MsG0480022789.01.T01:intron	25.0%
!	TGTCTAATTTACTATCTTTC+AGG	+	Chr4:76678707-76678726	MsG0480022789.01.T01:intron	25.0%
!	TTCAATCAAATTAAAAGCAG+GGG	-	Chr4:76678870-76678889	None:intergenic	25.0%
!!	ATAAACTCATGTAGAACTTT+TGG	-	Chr4:76679543-76679562	None:intergenic	25.0%
!!	GGATTGTTATAATTTTATCG+AGG	+	Chr4:76679920-76679939	MsG0480022789.01.T01:intron	25.0%
!!	TATGTTTGATATGTGTTTTG+TGG	+	Chr4:76677865-76677884	MsG0480022789.01.T01:intron	25.0%
!!	TGCCCAAATATTTTCATTAT+GGG	+	Chr4:76678604-76678623	MsG0480022789.01.T01:intron	25.0%
!!	TTGTAATTTGTAATGGTTTC+TGG	+	Chr4:76679780-76679799	MsG0480022789.01.T01:intron	25.0%
!!!	GGACCAATTTTTAAAATAGA+TGG	+	Chr4:76680016-76680035	MsG0480022789.01.T01:intron	25.0%
!!!	TTGTGTTTTTAAATTTGCAG+AGG	+	Chr4:76679309-76679328	MsG0480022789.01.T01:intron	25.0%
	AAACACACTTACCAGTAATA+CGG	-	Chr4:76677713-76677732	None:intergenic	30.0%
	AAATAGCTTATGAACCTGTT+AGG	-	Chr4:76678160-76678179	None:intergenic	30.0%
	AAATTACAACCAACGTAAGT+GGG	-	Chr4:76679740-76679759	None:intergenic	30.0%
	AAGCTAATTAGATACTAAGC+TGG	-	Chr4:76679285-76679304	None:intergenic	30.0%
	AAGTTGGAAATAACCAAACA+GGG	-	Chr4:76677965-76677984	None:intergenic	30.0%
	AATGCCAAAAGTGAAGATTT+GGG	+	Chr4:76677939-76677958	MsG0480022789.01.T01:intron	30.0%
	ACAAAATAAGAGTAACTGGA+AGG	-	Chr4:76679223-76679242	None:intergenic	30.0%
	ACATGCAATTAAGCCTTTAT+AGG	+	Chr4:76680068-76680087	MsG0480022789.01.T01:intron	30.0%
	ACATTATGCAAAACAGCTTA+CGG	-	Chr4:76678121-76678140	None:intergenic	30.0%
	ATAAATGAGCGATTCTACTA+TGG	-	Chr4:76678636-76678655	None:intergenic	30.0%
	CAAAATTGTAAATGGCAAGA+AGG	-	Chr4:76678406-76678425	None:intergenic	30.0%
	CCCTTATGAGTATAACTTAA+TGG	+	Chr4:76679675-76679694	MsG0480022789.01.T01:intron	30.0%
	CTAATTTACTATCTTTCAGG+TGG	+	Chr4:76678710-76678729	MsG0480022789.01.T01:intron	30.0%
	GCCATTAAGTTATACTCATA+AGG	-	Chr4:76679679-76679698	None:intergenic	30.0%
	TAAAGGCTTAATTGCATGTT+TGG	-	Chr4:76680067-76680086	None:intergenic	30.0%
	TAATGGAGCAATTCTTCTAT+TGG	+	Chr4:76678442-76678461	MsG0480022789.01.T01:intron	30.0%
	TCTGGAAAGAAACAAAAACA+CGG	-	Chr4:76679448-76679467	None:intergenic	30.0%
	TGACATGATAAAACACACAA+TGG	-	Chr4:76680363-76680382	None:intergenic	30.0%
	TGGAATGAATGATAAAACGA+AGG	-	Chr4:76677598-76677617	None:intergenic	30.0%
	TTTCTTTCCAGACTGTATTA+TGG	+	Chr4:76679456-76679475	MsG0480022789.01.T01:three_prime_UTR	30.0%
!	AAAGATGGTGAACAAGTTTT+TGG	+	Chr4:76677519-76677538	MsG0480022789.01.T01:CDS	30.0%
!	ACGTTGGTTGTAATTTGTAA+TGG	+	Chr4:76679773-76679792	MsG0480022789.01.T01:intron	30.0%
!	GTGCCCAAATATTTTCATTA+TGG	+	Chr4:76678603-76678622	MsG0480022789.01.T01:intron	30.0%
!	TAAGTTGGAAATAACCAAAC+AGG	-	Chr4:76677966-76677985	None:intergenic	30.0%
!	TGCTTCATCTAACTTTTGTT+CGG	+	Chr4:76679642-76679661	MsG0480022789.01.T01:intron	30.0%
!!	ATTTTCCAAAATAGCTTGTG+AGG	-	Chr4:76678236-76678255	None:intergenic	30.0%
!!	TGTGCCCAAATGTTTTTATT+TGG	-	Chr4:76678475-76678494	None:intergenic	30.0%
!!!	ACACTTGTTTTAGAGAACTT+AGG	-	Chr4:76678341-76678360	None:intergenic	30.0%
!!!	TGTTTTTCTCTAAGATCTGA+TGG	+	Chr4:76677406-76677425	MsG0480022789.01.T01:intron	30.0%
!!!	TTTGTTTTTTGAAGACACGT+TGG	+	Chr4:76679757-76679776	MsG0480022789.01.T01:intron	30.0%
	AAATGCAATTACCTTGCATC+TGG	-	Chr4:76678807-76678826	None:intergenic	35.0%
	AACATCGCATAACTAAACTG+AGG	-	Chr4:76679832-76679851	None:intergenic	35.0%
	AGTTAACGTACCATTGTTGA+AGG	-	Chr4:76677282-76677301	None:intergenic	35.0%
	CAAATTACAACCAACGTAAG+TGG	-	Chr4:76679741-76679760	None:intergenic	35.0%
	CAATGCCAAAAGTGAAGATT+TGG	+	Chr4:76677938-76677957	MsG0480022789.01.T01:intron	35.0%
	CATGATAAAACACACAATGG+AGG	-	Chr4:76680360-76680379	None:intergenic	35.0%
	GAATATGCCATAATACAGTC+TGG	-	Chr4:76679466-76679485	None:intergenic	35.0%
	GCTCTACCCTGATAATATAA+TGG	+	Chr4:76678425-76678444	MsG0480022789.01.T01:intron	35.0%
	GGAAATAAATACGCAATAGC+AGG	-	Chr4:76680223-76680242	None:intergenic	35.0%
	GGGTAGAGCAAAATTGTAAA+TGG	-	Chr4:76678414-76678433	None:intergenic	35.0%
	TAAGTGCACACACTATAAGT+TGG	-	Chr4:76677981-76678000	None:intergenic	35.0%
	TGGGGCAACTTGATATTTAA+TGG	+	Chr4:76680272-76680291	MsG0480022789.01.T01:intron	35.0%
!	AGATCTGATGGTTTGTGAAA+TGG	+	Chr4:76677418-76677437	MsG0480022789.01.T01:intron	35.0%
!!	AGCATGTAACTGATTTGTCT+GGG	+	Chr4:76677673-76677692	MsG0480022789.01.T01:intron	35.0%
!!	CTGAGTTTGCTATGGTATTA+TGG	+	Chr4:76679393-76679412	MsG0480022789.01.T01:exon	35.0%
!!	GTTTGCTATGGTATTATGGA+AGG	+	Chr4:76679397-76679416	MsG0480022789.01.T01:three_prime_UTR	35.0%
!!	TTTGTGGAACTCTGTTTCTA+TGG	+	Chr4:76677881-76677900	MsG0480022789.01.T01:intron	35.0%
!!!	GAGCTGCTTCTGTTTTTATT+TGG	+	Chr4:76679419-76679438	MsG0480022789.01.T01:three_prime_UTR	35.0%
	AAACACACAATGGAGGTCAT+TGG	-	Chr4:76680353-76680372	None:intergenic	40.0%
	AACACACAATGGAGGTCATT+GGG	-	Chr4:76680352-76680371	None:intergenic	40.0%
	AAGGAAGAAACAGTGACTCT+TGG	+	Chr4:76677486-76677505	MsG0480022789.01.T01:CDS	40.0%
	ATTGTAGTCGTCGAAGAGAA+AGG	+	Chr4:76677452-76677471	MsG0480022789.01.T01:intron	40.0%
	CACGACATGCATCCTAAAAA+TGG	-	Chr4:76679095-76679114	None:intergenic	40.0%
	GAAACACTTGTCCGTATTAC+TGG	+	Chr4:76677699-76677718	MsG0480022789.01.T01:CDS	40.0%
	GAATCCAACACCTTCAACAA+TGG	+	Chr4:76677269-76677288	MsG0480022789.01.T01:intron	40.0%
	GGAAACAAGACTAAAACACC+AGG	+	Chr4:76678994-76679013	MsG0480022789.01.T01:CDS	40.0%
	GGTAAATAGACTCACGATGA+AGG	-	Chr4:76677577-76677596	None:intergenic	40.0%
	TGTGAAATTCCCACTTACGT+TGG	+	Chr4:76679728-76679747	MsG0480022789.01.T01:intron	40.0%
	TGTTCACCATCTTTAACAGC+TGG	-	Chr4:76677513-76677532	None:intergenic	40.0%
!	AGAGTCACTGTTTCTTCCTT+TGG	-	Chr4:76677486-76677505	None:intergenic	40.0%
!	CTATCTTTCAGGTGGAATGA+AGG	+	Chr4:76678718-76678737	MsG0480022789.01.T01:intron	40.0%
!	CTGATGGTTTGTGAAATGGT+TGG	+	Chr4:76677422-76677441	MsG0480022789.01.T01:intron	40.0%
!	GTTCTCTCTGAAGAAGAAGA+AGG	+	Chr4:76677223-76677242	MsG0480022789.01.T01:five_prime_UTR	40.0%
!!	AATTTGCTGATCCTGTGTTC+TGG	+	Chr4:76678921-76678940	MsG0480022789.01.T01:intron	40.0%
!!	CACGATGAAGGTATCGTTAA+AGG	-	Chr4:76677565-76677584	None:intergenic	40.0%
!!	CAGCATGTAACTGATTTGTC+TGG	+	Chr4:76677672-76677691	MsG0480022789.01.T01:intron	40.0%
!!	TTTAGTCTTGTTTCCTCCAG+TGG	-	Chr4:76678989-76679008	None:intergenic	40.0%
!!!	CATTTTTAGGATGCATGTCG+TGG	+	Chr4:76679093-76679112	MsG0480022789.01.T01:intron	40.0%
	AATGGCAAGAAGGGTCTGTT+TGG	-	Chr4:76678396-76678415	None:intergenic	45.0%
	ACACACAATGGAGGTCATTG+GGG	-	Chr4:76680351-76680370	None:intergenic	45.0%
	ACATGCATCCAGCTGGTTAA+TGG	-	Chr4:76678671-76678690	None:intergenic	45.0%
	AGTGGGAATTTCACAGCCAT+TGG	-	Chr4:76679723-76679742	None:intergenic	45.0%
	CAGAGAGAACAAAGCTTCGA+TGG	-	Chr4:76677213-76677232	None:intergenic	45.0%
	CTTGGTCCAGCTGTTAAAGA+TGG	+	Chr4:76677504-76677523	MsG0480022789.01.T01:CDS	45.0%
	GAGAAAGGTTAGAGAGCCAA+AGG	+	Chr4:76677467-76677486	MsG0480022789.01.T01:CDS	45.0%
	GCTCGGTCAGGAATGAAAAT+CGG	+	Chr4:76679048-76679067	MsG0480022789.01.T01:CDS	45.0%
	GGAATGAAAATCGGTCGCAT+AGG	+	Chr4:76679057-76679076	MsG0480022789.01.T01:CDS	45.0%
	TACCCCTTCTACCACTCTTT+CGG	-	Chr4:76679366-76679385	None:intergenic	45.0%
	TGCAATTACCTTGCATCTGG+TGG	-	Chr4:76678804-76678823	None:intergenic	45.0%
!	AGGGCCCAAATCTTCACTTT+TGG	-	Chr4:76677946-76677965	None:intergenic	45.0%
!	CCAAAATAGCTTGTGAGGAC+AGG	-	Chr4:76678231-76678250	None:intergenic	45.0%
!	CCTGTCCTCACAAGCTATTT+TGG	+	Chr4:76678228-76678247	MsG0480022789.01.T01:intron	45.0%
!	CGTACCATTGTTGAAGGTGT+TGG	-	Chr4:76677276-76677295	None:intergenic	45.0%
!!	AGAAGGCTCTGAGTTTGCTA+TGG	+	Chr4:76679385-76679404	MsG0480022789.01.T01:exon	45.0%
!!	TGTGTTCTGGAACAGGAGTT+GGG	+	Chr4:76678934-76678953	MsG0480022789.01.T01:intron	45.0%
!!!	ATTTTTTTTTTTTTTTGTTT+TGG	-	Chr4:76680422-76680441	None:intergenic	5.0%
	AAGACTAAAACACCAGGCCC+TGG	+	Chr4:76679000-76679019	MsG0480022789.01.T01:CDS	50.0%
	AGAGTGGTAGAAGGGGTAGA+AGG	+	Chr4:76679368-76679387	MsG0480022789.01.T01:CDS	50.0%
	ATCACCAGCTTAGAGCAGCA+GGG	-	Chr4:76679129-76679148	None:intergenic	50.0%
	CAACTCCTGTTCCAGAACAC+AGG	-	Chr4:76678935-76678954	None:intergenic	50.0%
	CACACAATGGAGGTCATTGG+GGG	-	Chr4:76680350-76680369	None:intergenic	50.0%
	CTTCGTTGCCATTAACCAGC+TGG	+	Chr4:76678660-76678679	MsG0480022789.01.T01:intron	50.0%
	GACTTAGACATGCATCCAGC+TGG	-	Chr4:76678678-76678697	None:intergenic	50.0%
	GCAGCAAGCATAGCAGCATA+TGG	-	Chr4:76678770-76678789	None:intergenic	50.0%
	GTGAAGATTTGGGCCCTGTT+TGG	+	Chr4:76677949-76677968	MsG0480022789.01.T01:intron	50.0%
	TTTCATTCCTGACCGAGCCA+AGG	-	Chr4:76679046-76679065	None:intergenic	50.0%
!	AAGAAGAAGAAGGTGCACGC+CGG	+	Chr4:76677233-76677252	MsG0480022789.01.T01:five_prime_UTR	50.0%
!	GGGTGCTGTCAGAAGGAATT+GGG	-	Chr4:76679342-76679361	None:intergenic	50.0%
!	GGTGCTGTCAGAAGGAATTG+GGG	-	Chr4:76679341-76679360	None:intergenic	50.0%
!	TCTAAGCTGGTGATGTGGTC+TGG	+	Chr4:76679135-76679154	MsG0480022789.01.T01:intron	50.0%
!	TCTTGTTTCCTCCAGTGGCA+CGG	-	Chr4:76678984-76679003	None:intergenic	50.0%
!!	CTGATCCTGTGTTCTGGAAC+AGG	+	Chr4:76678927-76678946	MsG0480022789.01.T01:intron	50.0%
!!	CTGTGTTCTGGAACAGGAGT+TGG	+	Chr4:76678933-76678952	MsG0480022789.01.T01:intron	50.0%
	AGATGTCGCCACCAGATGCA+AGG	+	Chr4:76678793-76678812	MsG0480022789.01.T01:CDS	55.0%
	CACATCAAACTCCGTGCCAC+TGG	+	Chr4:76678970-76678989	MsG0480022789.01.T01:CDS	55.0%
	CATCACCAGCTTAGAGCAGC+AGG	-	Chr4:76679130-76679149	None:intergenic	55.0%
	CCCTTCTACCACTCTTTCGG+CGG	-	Chr4:76679363-76679382	None:intergenic	55.0%
	CCGCCGAAAGAGTGGTAGAA+GGG	+	Chr4:76679360-76679379	MsG0480022789.01.T01:CDS	55.0%
	CCTTCTACCACTCTTTCGGC+GGG	-	Chr4:76679362-76679381	None:intergenic	55.0%
	CGCCGAAAGAGTGGTAGAAG+GGG	+	Chr4:76679361-76679380	MsG0480022789.01.T01:CDS	55.0%
	GGATTCCTGCTTCAATCCGC+CGG	-	Chr4:76677255-76677274	None:intergenic	55.0%
!	ATCAAACTCCGTGCCACTGG+AGG	+	Chr4:76678973-76678992	MsG0480022789.01.T01:CDS	55.0%
!	CGGGTGCTGTCAGAAGGAAT+TGG	-	Chr4:76679343-76679362	None:intergenic	55.0%
!	GCTGCTCTAAGCTGGTGATG+TGG	+	Chr4:76679130-76679149	MsG0480022789.01.T01:intron	55.0%
!	TGTTCCCTGCTGCTCTAAGC+TGG	+	Chr4:76679122-76679141	MsG0480022789.01.T01:intron	55.0%
	CCCGCCGAAAGAGTGGTAGA+AGG	+	Chr4:76679359-76679378	MsG0480022789.01.T01:CDS	60.0%
	TTCCTGACCGAGCCAAGGCT+CGG	-	Chr4:76679041-76679060	None:intergenic	60.0%
!	AAGAAGAAGGTGCACGCCGG+CGG	+	Chr4:76677236-76677255	MsG0480022789.01.T01:five_prime_UTR	60.0%
!	TTTCGGCGGGTGCTGTCAGA+AGG	-	Chr4:76679349-76679368	None:intergenic	60.0%
	AACACCAGGCCCTGGTGCTC+AGG	+	Chr4:76679008-76679027	MsG0480022789.01.T01:CDS	65.0%
	CTGCTCTCCGAGCCTTGGCT+CGG	+	Chr4:76679031-76679050	MsG0480022789.01.T01:CDS	65.0%
	GACAGCACCCGCCGAAAGAG+TGG	+	Chr4:76679352-76679371	MsG0480022789.01.T01:CDS	65.0%
	GGAGAGCAGCCTGAGCACCA+GGG	-	Chr4:76679020-76679039	None:intergenic	65.0%
	TCAGGCTGCTCTCCGAGCCT+TGG	+	Chr4:76679026-76679045	MsG0480022789.01.T01:CDS	65.0%
	CGGAGAGCAGCCTGAGCACC+AGG	-	Chr4:76679021-76679040	None:intergenic	70.0%
!!	CTCCGAGCCTTGGCTCGGTC+AGG	+	Chr4:76679036-76679055	MsG0480022789.01.T01:CDS	70.0%
!!	GCACGCCGGCGGATTGAAGC+AGG	+	Chr4:76677247-76677266	MsG0480022789.01.T01:five_prime_UTR	70.0%
	GCAGCCTGAGCACCAGGGCC+TGG	-	Chr4:76679015-76679034	None:intergenic	75.0%

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	76677197	76680452	76677197	ID=MsG0480022789.01;Name=MsG0480022789.01
Chr4	mRNA	76677197	76680452	76677197	ID=MsG0480022789.01.T01;Parent=MsG0480022789.01;Name=MsG0480022789.01.T01;_AED=0.46;_eAED=0.46;_QI=91\|1\|1\|1\|0.5\|0.42\|7\|218\|151
Chr4	exon	76679329	76679584	76679329	ID=MsG0480022789.01.T01:exon:10931;Parent=MsG0480022789.01.T01
Chr4	exon	76680423	76680452	76680423	ID=MsG0480022789.01.T01:exon:10932;Parent=MsG0480022789.01.T01
Chr4	five_prime_UTR	76677197	76677287	76677197	ID=MsG0480022789.01.T01:five_prime_utr;Parent=MsG0480022789.01.T01
Chr4	CDS	76677288	76677290	76677288	ID=MsG0480022789.01.T01:cds;Parent=MsG0480022789.01.T01
Chr4	CDS	76677459	76677581	76677459	ID=MsG0480022789.01.T01:cds;Parent=MsG0480022789.01.T01
Chr4	CDS	76677675	76677720	76677675	ID=MsG0480022789.01.T01:cds;Parent=MsG0480022789.01.T01
Chr4	CDS	76678729	76678814	76678729	ID=MsG0480022789.01.T01:cds;Parent=MsG0480022789.01.T01
Chr4	CDS	76678949	76679078	76678949	ID=MsG0480022789.01.T01:cds;Parent=MsG0480022789.01.T01
Chr4	CDS	76679329	76679396	76679329	ID=MsG0480022789.01.T01:cds;Parent=MsG0480022789.01.T01
Chr4	three_prime_UTR	76679397	76679584	76679397	ID=MsG0480022789.01.T01:three_prime_utr;Parent=MsG0480022789.01.T01
Chr4	three_prime_UTR	76680423	76680452	76680423	ID=MsG0480022789.01.T01:three_prime_utr;Parent=MsG0480022789.01.T01
Chr4	mRNA	76677197	76679713	76677197	ID=MsG0480022789.01.T02;Parent=MsG0480022789.01;Name=MsG0480022789.01.T02;_AED=0.46;_eAED=0.46;_QI=91\|1\|1\|1\|0.6\|0.5\|6\|317\|151
Chr4	exon	76679329	76679713	76679329	ID=MsG0480022789.01.T02:exon:10933;Parent=MsG0480022789.01.T02
Chr4	five_prime_UTR	76677197	76677287	76677197	ID=MsG0480022789.01.T02:five_prime_utr;Parent=MsG0480022789.01.T02
Chr4	CDS	76677288	76677290	76677288	ID=MsG0480022789.01.T02:cds;Parent=MsG0480022789.01.T02
Chr4	CDS	76677459	76677581	76677459	ID=MsG0480022789.01.T02:cds;Parent=MsG0480022789.01.T02
Chr4	CDS	76677675	76677720	76677675	ID=MsG0480022789.01.T02:cds;Parent=MsG0480022789.01.T02
Chr4	CDS	76678729	76678814	76678729	ID=MsG0480022789.01.T02:cds;Parent=MsG0480022789.01.T02
Chr4	CDS	76678949	76679078	76678949	ID=MsG0480022789.01.T02:cds;Parent=MsG0480022789.01.T02
Chr4	CDS	76679329	76679396	76679329	ID=MsG0480022789.01.T02:cds;Parent=MsG0480022789.01.T02
Chr4	three_prime_UTR	76679397	76679713	76679397	ID=MsG0480022789.01.T02:three_prime_utr;Parent=MsG0480022789.01.T02

Gene Sequence

>MsG0480022789.01.T02

ATGTCGTCGAAGAGAAAGGTTAGAGAGCCAAAGGAAGAAACAGTGACTCTTGGTCCAGCTGTTAAAGATGGTGAACAAGTTTTTGGTGTTGCTCGTATCTTTGCTTCCTTTAACGATACCTTCATCCATGTAACTGATTTGTCTGGGAGAGAAACACTTGTCCGTATTACTGGTGGAATGAAGGTCAAAGCTGACAGAGATGAGTCATCTCCATATGCTGCTATGCTTGCTGCACAAGATGTCGCCACCAGATGCAAGGAGTTGGGCATAACTGCTCTTCACATCAAACTCCGTGCCACTGGAGGAAACAAGACTAAAACACCAGGCCCTGGTGCTCAGGCTGCTCTCCGAGCCTTGGCTCGGTCAGGAATGAAAATCGGTCGCATAGAGGATGTGACCCCAATTCCTTCTGACAGCACCCGCCGAAAGAGTGGTAGAAGGGGTAGAAGGCTCTGA

>MsG0480022789.01.T01

Protein sequence

>MsG0480022789.01.T02

MSSKRKVREPKEETVTLGPAVKDGEQVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVATRCKELGITALHIKLRATGGNKTKTPGPGAQAALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRGRRL*

>MsG0480022789.01.T01

MSSKRKVREPKEETVTLGPAVKDGEQVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVATRCKELGITALHIKLRATGGNKTKTPGPGAQAALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRGRRL*