AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016887.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016887.01.T01 MTR_3g097220 84.387 269 4 3 46 277 38 305 2.28e-152 430
MsG0380016887.01.T01 MTR_3g097220 84.644 267 3 3 46 275 38 303 3.74e-151 427
MsG0380016887.01.T01 MTR_8g095060 71.591 264 38 2 48 274 38 301 1.71e-128 370
MsG0380016887.01.T01 MTR_3g097220 82.039 206 0 2 107 275 1 206 1.83e-109 318
MsG0380016887.01.T01 MTR_4g074050 58.545 275 75 3 52 289 43 315 1.79e-102 303
MsG0380016887.01.T01 MTR_8g081650 52.768 271 84 4 53 279 45 315 9.06e-90 271
MsG0380016887.01.T01 MTR_2g006070 52.778 252 82 2 53 267 55 306 1.86e-88 268
MsG0380016887.01.T01 MTR_5g090020 50.000 298 104 5 39 299 37 326 3.73e-85 259
MsG0380016887.01.T01 MTR_3g083960 50.794 252 87 2 53 267 45 296 3.44e-84 256
MsG0380016887.01.T01 MTR_2g006070 62.434 189 65 1 53 235 55 243 1.62e-81 247
MsG0380016887.01.T01 MTR_5g090020 48.134 268 99 4 69 299 17 281 1.02e-70 221
MsG0380016887.01.T01 MTR_2g006070 62.069 145 49 1 53 191 55 199 3.45e-58 186
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016887.01.T01 AT2G21120 56.410 273 82 2 53 288 43 315 1.47e-97 291
MsG0380016887.01.T01 AT4G38730 58.824 255 68 2 53 270 43 297 1.90e-96 288
MsG0380016887.01.T01 AT1G71900 54.545 253 78 2 52 267 56 308 2.16e-92 278
MsG0380016887.01.T01 AT1G71900 54.545 253 78 2 52 267 56 308 4.35e-92 277
MsG0380016887.01.T01 AT1G34470 52.381 252 83 2 53 267 57 308 1.35e-88 269
MsG0380016887.01.T01 AT3G23870 54.365 252 78 2 53 267 46 297 1.34e-87 265
MsG0380016887.01.T01 AT3G23870 54.365 252 78 2 53 267 46 297 1.34e-87 265
MsG0380016887.01.T01 AT3G23870 54.365 252 78 2 53 267 46 297 1.34e-87 265
MsG0380016887.01.T01 AT3G23870 54.365 252 78 2 53 267 46 297 1.34e-87 265
MsG0380016887.01.T01 AT4G09640 52.747 273 85 4 53 287 57 323 2.25e-87 266
MsG0380016887.01.T01 AT4G13800 53.968 252 79 2 53 267 46 297 5.43e-86 261
MsG0380016887.01.T01 AT4G13800 53.968 252 79 2 53 267 46 297 5.43e-86 261
MsG0380016887.01.T01 AT4G13800 53.968 252 79 2 53 267 46 297 5.43e-86 261
MsG0380016887.01.T01 AT4G13800 53.968 252 79 2 53 267 46 297 5.43e-86 261
MsG0380016887.01.T01 AT4G13800 62.434 189 65 1 53 235 46 234 3.48e-78 238
MsG0380016887.01.T01 AT4G13800 62.434 189 65 1 53 235 46 234 3.48e-78 238
MsG0380016887.01.T01 AT4G13800 62.434 189 65 1 53 235 46 234 3.48e-78 238
MsG0380016887.01.T01 AT4G13800 62.434 189 65 1 53 235 46 234 3.48e-78 238
MsG0380016887.01.T01 AT4G13800 62.434 189 65 1 53 235 46 234 5.66e-78 239
MsG0380016887.01.T01 AT4G13800 62.434 189 65 1 53 235 46 234 5.66e-78 239
MsG0380016887.01.T01 AT3G23870 48.095 210 72 2 95 267 8 217 1.49e-58 188

Find 74 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTGAGAAGTTACAGAAAA+TGG 0.211943 3:-89083416 MsG0380016887.01.T01:CDS
ATTGGAATATGCTCCATAAT+TGG 0.219095 3:-89083074 MsG0380016887.01.T01:CDS
GTTATCTTCTTCAACCTCTT+TGG 0.228989 3:-89083995 MsG0380016887.01.T01:CDS
CTTCTCATTTAGGACTATTC+TGG 0.239931 3:-89082041 MsG0380016887.01.T01:intron
TAAAGTGAACCAAGCCTTCT+AGG 0.240709 3:-89080306 None:intergenic
TTACTTCTGTGCTAGAAATA+TGG 0.262020 3:-89083321 MsG0380016887.01.T01:CDS
GCTATTAAACTTACATTAGA+TGG 0.277983 3:-89082893 MsG0380016887.01.T01:CDS
TGCTATAGTTGATAGATCTA+TGG 0.295224 3:-89080387 MsG0380016887.01.T01:intron
CAGTTTAAATTACCTTAATA+TGG 0.300539 3:-89082804 MsG0380016887.01.T01:intron
TCTCCTTGCGCAACATGTAT+AGG 0.309086 3:-89085856 MsG0380016887.01.T01:CDS
TGTGCTAGAAATATGGCTTT+TGG 0.313475 3:-89083314 MsG0380016887.01.T01:CDS
ACGATAGGGCATGTCGTAAA+TGG 0.322833 3:+89085828 None:intergenic
CAACTAATCTTCCCCTTAAC+GGG 0.323049 3:+89085779 None:intergenic
TACAGTCAATGATCCAATTA+TGG 0.326528 3:+89083061 None:intergenic
GAATGATACTGACCATATTA+AGG 0.331004 3:+89082792 None:intergenic
CTCCTTGCGCAACATGTATA+GGG 0.349965 3:-89085855 MsG0380016887.01.T01:CDS
CATATTAAGGTAATTTAAAC+TGG 0.357572 3:+89082805 None:intergenic
TGTAAACGAAGATATTAGTT+TGG 0.387230 3:+89083096 None:intergenic
GCAACTAATCTTCCCCTTAA+CGG 0.390938 3:+89085778 None:intergenic
TTCCTGCGTCGACCCCGTTA+AGG 0.393325 3:-89085792 MsG0380016887.01.T01:CDS
AGCTTTATTGCAGTGATTGT+TGG 0.409368 3:-89083881 MsG0380016887.01.T01:intron
ATCTTCTTCAACCTCTTTGG+TGG 0.411998 3:-89083992 MsG0380016887.01.T01:CDS
CTTCAACCTCTTTGGTGGAT+CGG 0.423526 3:-89083987 MsG0380016887.01.T01:CDS
GGGTGTCTTCTATGCATTGT+CGG 0.427769 3:-89083385 MsG0380016887.01.T01:CDS
GTATTGGCTCATTTCATGTT+GGG 0.430211 3:-89083436 MsG0380016887.01.T01:CDS
ATTTCAGGTGTCGGAGGCTA+TGG 0.431816 3:-89084017 MsG0380016887.01.T01:intron
ACTAATATCTTCGTTTACAT+TGG 0.436105 3:-89083092 MsG0380016887.01.T01:CDS
CCTGTACTGACTGGAGGATC+TGG 0.438220 3:+89081933 None:intergenic
GCTATAGTTGATAGATCTAT+GGG 0.443283 3:-89080386 MsG0380016887.01.T01:intron
GTGCTTTGAGTATTATCGTT+AGG 0.446393 3:-89083799 MsG0380016887.01.T01:intron
TGGCTAGTGTAGTGCTGTAT+TGG 0.446403 3:-89083452 MsG0380016887.01.T01:intron
ACATCTTAACTCAACCTAGA+AGG 0.446492 3:+89080292 None:intergenic
ACTGGTAATGATGCAGGAAA+TGG 0.447294 3:+89082823 None:intergenic
ATGTCTGAAAGTAGACAAAC+TGG 0.451850 3:+89082864 None:intergenic
TCCTGCGTCGACCCCGTTAA+GGG 0.453871 3:-89085791 MsG0380016887.01.T01:CDS
TTACAGAAAATGGGCATGCT+TGG 0.455638 3:-89083406 MsG0380016887.01.T01:CDS
TTGTATTGTGCGCCTCGCTA+TGG 0.458334 3:-89083119 MsG0380016887.01.T01:CDS
TGTATTGGCTCATTTCATGT+TGG 0.463222 3:-89083437 MsG0380016887.01.T01:CDS
TATGGGGTTTAGTTCTTCAC+AGG 0.465650 3:-89080369 MsG0380016887.01.T01:CDS
TACAGAAAATGGGCATGCTT+GGG 0.471819 3:-89083405 MsG0380016887.01.T01:CDS
GGTGTCTTCTATGCATTGTC+GGG 0.471983 3:-89083384 MsG0380016887.01.T01:CDS
ATTTAAACTGGTAATGATGC+AGG 0.482970 3:+89082817 None:intergenic
TTAACTCAACCTAGAAGGCT+TGG 0.499872 3:+89080297 None:intergenic
GACTGGAGGATCTGGTACTC+TGG 0.501439 3:+89081941 None:intergenic
GCGGTGCTTGTTACTCCACT+TGG 0.505004 3:-89083821 MsG0380016887.01.T01:CDS
GGTGAGAAGTTACAGAAAAT+GGG 0.507262 3:-89083415 MsG0380016887.01.T01:CDS
TTGGTAGGCTTACGCATGAC+AGG 0.523107 3:+89085719 None:intergenic
CCCCTTAACGGGGTCGACGC+AGG 0.527422 3:+89085790 None:intergenic
AATCTAACTCATAAGACGAT+AGG 0.531290 3:+89085813 None:intergenic
CCAGATCCTCCAGTCAGTAC+AGG 0.543909 3:-89081933 MsG0380016887.01.T01:intron
ACCTCTTTGGTGGATCGGCA+TGG 0.547620 3:-89083982 MsG0380016887.01.T01:CDS
ATCTAACTCATAAGACGATA+GGG 0.551804 3:+89085814 None:intergenic
CTTTCCATTTCAGGTGTCGG+AGG 0.555330 3:-89084023 MsG0380016887.01.T01:intron
AAGTATAAGCAGCATTGCAT+CGG 0.570033 3:-89082015 MsG0380016887.01.T01:CDS
GTCATGAGCGTAAAAGCGAT+TGG 0.570641 3:-89082920 MsG0380016887.01.T01:CDS
TGTAGCATACATTTATGCAC+CGG 0.580513 3:-89083843 MsG0380016887.01.T01:CDS
TCTACGTACGAAGTTGTGCT+AGG 0.587459 3:-89085746 MsG0380016887.01.T01:CDS
AGTTTGTCTACTTTCAGACA+TGG 0.587846 3:-89082862 MsG0380016887.01.T01:CDS
TAGGCCTTACCTGTACTGAC+TGG 0.594862 3:+89081924 None:intergenic
CACAGCCTCGGCAATAGCTG+TGG 0.597556 3:-89083156 MsG0380016887.01.T01:intron
CCTGCGTCGACCCCGTTAAG+GGG 0.598298 3:-89085790 MsG0380016887.01.T01:CDS
AGCATTGCATCGGAGCTATG+TGG 0.620149 3:-89082005 MsG0380016887.01.T01:CDS
AGTGGAGTAACAAGCACCGC+CGG 0.620493 3:+89083824 None:intergenic
GACCCTATACATGTTGCGCA+AGG 0.631742 3:+89085853 None:intergenic
GCCTTACCTGTACTGACTGG+AGG 0.634907 3:+89081927 None:intergenic
ATATTAGTTTGGCCATAGCG+AGG 0.640349 3:+89083107 None:intergenic
ACCATGCCGATCCACCAAAG+AGG 0.641294 3:+89083981 None:intergenic
ATAATACTCAAAGCACCAAG+TGG 0.642312 3:+89083806 None:intergenic
ACTGTAAATATGTATTGTCA+TGG 0.644004 3:-89080338 MsG0380016887.01.T01:CDS
AACTAATCTTCCCCTTAACG+GGG 0.648937 3:+89085780 None:intergenic
AGCATACATTTATGCACCGG+CGG 0.664917 3:-89083840 MsG0380016887.01.T01:CDS
GAACGCCACAGCTATTGCCG+AGG 0.679324 3:+89083151 None:intergenic
TGCATGGAGCACGATCTCAG+TGG 0.684014 3:+89083360 None:intergenic
CTATAGTTGATAGATCTATG+GGG 0.741250 3:-89080385 MsG0380016887.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATAATTAAAGATATTAA+CGG + Chr3:89084554-89084573 None:intergenic 10.0%
!!! TGGTATTTTATTTATTTTAT+TGG - Chr3:89084027-89084046 MsG0380016887.01.T01:intron 10.0%
!! AAAAAAAAAGTTGTTATGTT+AGG + Chr3:89082224-89082243 None:intergenic 15.0%
!! AAAAAGCAAAAAAATATGTA+TGG + Chr3:89085489-89085508 None:intergenic 15.0%
!! AAAAGCAAAAAAATATGTAT+GGG + Chr3:89085488-89085507 None:intergenic 15.0%
!! AATCAAATATTGCTATAATA+AGG + Chr3:89085740-89085759 None:intergenic 15.0%
!! AATGTTTATGATTAAAGAAT+TGG - Chr3:89080757-89080776 MsG0380016887.01.T01:intron 15.0%
!! ACTTATAATTATATTAGTTC+AGG + Chr3:89083708-89083727 None:intergenic 15.0%
!! TAAACAAAATGATTTATGTT+TGG + Chr3:89081436-89081455 None:intergenic 15.0%
!! TATATGTTAGTTAAAAAGTA+TGG - Chr3:89084658-89084677 MsG0380016887.01.T01:intron 15.0%
!! TTAAAAAGGAGAAATTTAAT+CGG - Chr3:89084909-89084928 MsG0380016887.01.T01:intron 15.0%
!!! ATATGATATTTGAAGTATTT+TGG + Chr3:89085091-89085110 None:intergenic 15.0%
!!! ATTTGTTATAAACAAAGATT+AGG - Chr3:89085518-89085537 MsG0380016887.01.T01:intron 15.0%
!!! TGTTAATATATTTTTACGTA+TGG - Chr3:89083409-89083428 MsG0380016887.01.T01:CDS 15.0%
!! AAAAGAACCTAAATATTACA+GGG + Chr3:89085444-89085463 None:intergenic 20.0%
!! AAAGAATGAGAATTGATAAA+TGG + Chr3:89081345-89081364 None:intergenic 20.0%
!! AAAGTTAGTTAGTTACATAA+CGG + Chr3:89082128-89082147 None:intergenic 20.0%
!! AATACAGTACTGTATTAAAA+AGG - Chr3:89084895-89084914 MsG0380016887.01.T01:intron 20.0%
!! ACAATTAACTTTCATTTAGA+AGG - Chr3:89080989-89081008 MsG0380016887.01.T01:intron 20.0%
!! ACAATTTGCAATTCAAAATT+CGG + Chr3:89083825-89083844 None:intergenic 20.0%
!! ATTAGATTAGATTAGATTCT+CGG + Chr3:89081686-89081705 None:intergenic 20.0%
!! CAATTAACTTTCATTTAGAA+GGG - Chr3:89080990-89081009 MsG0380016887.01.T01:intron 20.0%
!! CAGTTTAAATTACCTTAATA+TGG - Chr3:89083363-89083382 MsG0380016887.01.T01:CDS 20.0%
!! CATATTAAGGTAATTTAAAC+TGG + Chr3:89083365-89083384 None:intergenic 20.0%
!! GAAAATTGTTCATTAAGTAT+TGG + Chr3:89081073-89081092 None:intergenic 20.0%
!! TAAAAAGGAGAAATTTAATC+GGG - Chr3:89084910-89084929 MsG0380016887.01.T01:intron 20.0%
!! TAAAAGAACCTAAATATTAC+AGG + Chr3:89085445-89085464 None:intergenic 20.0%
!! TAAGAAATCAAATAACACAA+TGG + Chr3:89080580-89080599 None:intergenic 20.0%
!! TATAATTATATTAGTTCAGG+TGG + Chr3:89083705-89083724 None:intergenic 20.0%
!! TATATACTAATAATGCATTG+TGG + Chr3:89080609-89080628 None:intergenic 20.0%
!! TCTAACTATAAGCTAAAATT+TGG + Chr3:89082527-89082546 None:intergenic 20.0%
!! TGATGAAAATGATTATATCA+TGG - Chr3:89084938-89084957 MsG0380016887.01.T01:intron 20.0%
!! TTCAAATTCAAAGCTTAAAA+AGG + Chr3:89082660-89082679 None:intergenic 20.0%
!!! ACTTAATGAACAATTTTCTT+AGG - Chr3:89081075-89081094 MsG0380016887.01.T01:intron 20.0%
!!! CTTAATGAACAATTTTCTTA+GGG - Chr3:89081076-89081095 MsG0380016887.01.T01:intron 20.0%
!!! GTTTGATTTTGATTGAATTA+AGG + Chr3:89085173-89085192 None:intergenic 20.0%
!!! TGAATTATGATTTTACTCTT+TGG - Chr3:89082959-89082978 MsG0380016887.01.T01:intron 20.0%
!!! TGTTTTATCAGATACTTTAA+AGG + Chr3:89080529-89080548 None:intergenic 20.0%
!!! TTATTTCTCGTTATATGTTA+CGG + Chr3:89080710-89080729 None:intergenic 20.0%
!!! TTTTTTTCTTCTTATTCTCT+TGG + Chr3:89080494-89080513 None:intergenic 20.0%
! AAAATCAAACATAGCTCTTA+GGG - Chr3:89085183-89085202 MsG0380016887.01.T01:intron 25.0%
! ACTAAAATAGACATAGCTAA+AGG + Chr3:89081377-89081396 None:intergenic 25.0%
! ACTAATATCTTCGTTTACAT+TGG - Chr3:89083075-89083094 MsG0380016887.01.T01:CDS 25.0%
! ACTGTAAATATGTATTGTCA+TGG - Chr3:89085829-89085848 MsG0380016887.01.T01:CDS 25.0%
! AGCTTCATCATTAAGAAAAA+AGG - Chr3:89082011-89082030 MsG0380016887.01.T01:CDS 25.0%
! AGGTGATTCATAATCTTATA+TGG - Chr3:89083496-89083515 MsG0380016887.01.T01:intron 25.0%
! ATAGTTCCAATTTAATTGGA+AGG - Chr3:89085383-89085402 MsG0380016887.01.T01:intron 25.0%
! ATATTGCTATAATAAGGACT+AGG + Chr3:89085734-89085753 None:intergenic 25.0%
! ATGAAGTAGAAAGTTTAAAC+TGG + Chr3:89081820-89081839 None:intergenic 25.0%
! ATGATAAAGATGAATTGGAT+TGG + Chr3:89083142-89083161 None:intergenic 25.0%
! CAAAGTAAAATATGCATCTT+AGG - Chr3:89084052-89084071 MsG0380016887.01.T01:intron 25.0%
! CAATTAATAAAGACAGAAAG+AGG - Chr3:89081765-89081784 MsG0380016887.01.T01:intron 25.0%
! CAATTTGCAATTCAAAATTC+GGG + Chr3:89083824-89083843 None:intergenic 25.0%
! CTAGAATGATAAAGATGAAT+TGG + Chr3:89083147-89083166 None:intergenic 25.0%
! CTGTTGACAAAATTTAATAG+TGG - Chr3:89083167-89083186 MsG0380016887.01.T01:intron 25.0%
! GCTATTAAACTTACATTAGA+TGG - Chr3:89083274-89083293 MsG0380016887.01.T01:intron 25.0%
! TATAGCATAAGCATATTAAG+CGG + Chr3:89085767-89085786 None:intergenic 25.0%
! TATTGTAAAAGATGTGAACA+AGG + Chr3:89083981-89084000 None:intergenic 25.0%
! TATTTCTCGTTATATGTTAC+GGG + Chr3:89080709-89080728 None:intergenic 25.0%
! TCAAAGCTTAAAAAGGAAAA+GGG + Chr3:89082653-89082672 None:intergenic 25.0%
! TCATAATCTTATATGGTTCA+TGG - Chr3:89083503-89083522 MsG0380016887.01.T01:intron 25.0%
! TGTAAACGAAGATATTAGTT+TGG + Chr3:89083074-89083093 None:intergenic 25.0%
! TTCAAAGCTTAAAAAGGAAA+AGG + Chr3:89082654-89082673 None:intergenic 25.0%
! TTGACAAAATTTAATAGTGG+AGG - Chr3:89083170-89083189 MsG0380016887.01.T01:intron 25.0%
! TTGTAACCTTCCAATTAAAT+TGG + Chr3:89085392-89085411 None:intergenic 25.0%
!! AATATCTTGTTTCTCATTTC+AGG - Chr3:89083225-89083244 MsG0380016887.01.T01:intron 25.0%
!! AATGAATTTTCTTTGTGAGT+AGG - Chr3:89080831-89080850 MsG0380016887.01.T01:intron 25.0%
!! ATGAATTTTCTTTGTGAGTA+GGG - Chr3:89080832-89080851 MsG0380016887.01.T01:intron 25.0%
!! ATGTTCCTTTTATGTTGATA+AGG - Chr3:89085653-89085672 MsG0380016887.01.T01:intron 25.0%
!! CATTGTGATTTTTATCTGTT+AGG + Chr3:89080741-89080760 None:intergenic 25.0%
!! TGAGAGAATTGATTTATGTT+TGG + Chr3:89081480-89081499 None:intergenic 25.0%
!! TTATAATTCCATTCTAGCTA+GGG - Chr3:89081864-89081883 MsG0380016887.01.T01:intron 25.0%
!! TTTAAAATTGACGGTTGTTT+CGG + Chr3:89080679-89080698 None:intergenic 25.0%
!!! AATTTTGACTCATCCAAAAT+TGG - Chr3:89082590-89082609 MsG0380016887.01.T01:intron 25.0%
!!! AGAAGAATTTGATTTTGGAT+TGG + Chr3:89081892-89081911 None:intergenic 25.0%
!!! ATCTTTTATTTTTCCTGTAC+TGG - Chr3:89085623-89085642 MsG0380016887.01.T01:intron 25.0%
!!! GATGAAGAAGAATTTGATTT+TGG + Chr3:89081897-89081916 None:intergenic 25.0%
!!! GGTTTTGTGTTTAAAATTGA+CGG + Chr3:89080688-89080707 None:intergenic 25.0%
!!! TCTAGTATAAGAAAGCATTT+TGG - Chr3:89083465-89083484 MsG0380016887.01.T01:intron 25.0%
!!! TGTTCCTTTTATGTTGATAA+GGG - Chr3:89085654-89085673 MsG0380016887.01.T01:intron 25.0%
!!! TTTTTGGCTAGAATTACTTT+TGG + Chr3:89081159-89081178 None:intergenic 25.0%
!!! TTTTTTCTTAATGATGAAGC+TGG + Chr3:89082012-89082031 None:intergenic 25.0%
AACTCGTGTTGAAAATACTA+AGG + Chr3:89083547-89083566 None:intergenic 30.0%
AATCTAACTCATAAGACGAT+AGG + Chr3:89080357-89080376 None:intergenic 30.0%
AATGATATAAAGCTCTGTCA+TGG + Chr3:89084852-89084871 None:intergenic 30.0%
ACTAACTAACTTTCCATTTC+AGG - Chr3:89082135-89082154 MsG0380016887.01.T01:intron 30.0%
AGATCCCTTATCAACATAAA+AGG + Chr3:89085661-89085680 None:intergenic 30.0%
AGTAGAAAGTTTAAACTGGA+TGG + Chr3:89081816-89081835 None:intergenic 30.0%
ATAGCATAAGCATATTAAGC+GGG + Chr3:89085766-89085785 None:intergenic 30.0%
ATATTCAAAGCTGAACCAAA+CGG - Chr3:89081554-89081573 MsG0380016887.01.T01:intron 30.0%
ATCAATTTCTCAACTATCTG+TGG - Chr3:89084088-89084107 MsG0380016887.01.T01:intron 30.0%
ATCATTACTTGGATGTTATC+TGG + Chr3:89083665-89083684 None:intergenic 30.0%
ATCTAACTCATAAGACGATA+GGG + Chr3:89080356-89080375 None:intergenic 30.0%
ATTGGAATATGCTCCATAAT+TGG - Chr3:89083093-89083112 MsG0380016887.01.T01:CDS 30.0%
CAAAATCAAACATAGCTCTT+AGG - Chr3:89085182-89085201 MsG0380016887.01.T01:intron 30.0%
CAAAGCTTAAAAAGGAAAAG+GGG + Chr3:89082652-89082671 None:intergenic 30.0%
CAAGATTATATTAGTTCAGG+TGG + Chr3:89083790-89083809 None:intergenic 30.0%
CGATACACAATTCAAAAAAG+TGG + Chr3:89084999-89085018 None:intergenic 30.0%
CGCAAATTCAGTAACAAAAA+AGG + Chr3:89082266-89082285 None:intergenic 30.0%
CGTCAAGATTATATTAGTTC+AGG + Chr3:89083793-89083812 None:intergenic 30.0%
GAATGATACTGACCATATTA+AGG + Chr3:89083378-89083397 None:intergenic 30.0%
GATAACATCCAAGTAATGAT+TGG - Chr3:89083665-89083684 MsG0380016887.01.T01:intron 30.0%
GTCTTTATTAATTGTGCAGT+GGG + Chr3:89081759-89081778 None:intergenic 30.0%
TACAGTCAATGATCCAATTA+TGG + Chr3:89083109-89083128 None:intergenic 30.0%
TCTTTATTAATTGTGCAGTG+GGG + Chr3:89081758-89081777 None:intergenic 30.0%
TGTCTTTATTAATTGTGCAG+TGG + Chr3:89081760-89081779 None:intergenic 30.0%
TTACTTCTGTGCTAGAAATA+TGG - Chr3:89082846-89082865 MsG0380016887.01.T01:CDS 30.0%
TTGGTACAATGACAAGTATT+CGG + Chr3:89085565-89085584 None:intergenic 30.0%
! AACTTGCTTGTTAAGTTTCT+GGG - Chr3:89083870-89083889 MsG0380016887.01.T01:CDS 30.0%
! ACAAAATTTAATAGTGGAGG+CGG - Chr3:89083173-89083192 MsG0380016887.01.T01:intron 30.0%
! AGAAGTAAGAGACTTTTCTT+GGG + Chr3:89082834-89082853 None:intergenic 30.0%
! ATTTAAACTGGTAATGATGC+AGG + Chr3:89083353-89083372 None:intergenic 30.0%
! CTTATAATTCCATTCTAGCT+AGG - Chr3:89081863-89081882 MsG0380016887.01.T01:intron 30.0%
! GTATGTATATTTTGTGCTCT+AGG + Chr3:89080552-89080571 None:intergenic 30.0%
! TAGAAAAAAGTTTTCCAGTC+TGG - Chr3:89081639-89081658 MsG0380016887.01.T01:intron 30.0%
! TCAGACATGGATTTTTACAA+TGG - Chr3:89083318-89083337 MsG0380016887.01.T01:CDS 30.0%
!! ATGCGACATGTATTTTGAAA+TGG - Chr3:89084717-89084736 MsG0380016887.01.T01:intron 30.0%
!! CACTGTAGAGAATTGATTTT+GGG + Chr3:89081136-89081155 None:intergenic 30.0%
!! CTATAGTTGATAGATCTATG+GGG - Chr3:89085782-89085801 MsG0380016887.01.T01:CDS 30.0%
!! CTGCGACATATATTTTGAAT+CGG + Chr3:89084496-89084515 None:intergenic 30.0%
!! GACATATATTTTGAATCGGA+GGG + Chr3:89084492-89084511 None:intergenic 30.0%
!! GCTATAGTTGATAGATCTAT+GGG - Chr3:89085781-89085800 MsG0380016887.01.T01:CDS 30.0%
!! TAACTTGCTTGTTAAGTTTC+TGG - Chr3:89083869-89083888 MsG0380016887.01.T01:CDS 30.0%
!! TGCTATAGTTGATAGATCTA+TGG - Chr3:89085780-89085799 MsG0380016887.01.T01:CDS 30.0%
!! TGTATGTTTGGTTCCAATTT+TGG + Chr3:89082606-89082625 None:intergenic 30.0%
!!! CTTTTGTTTGTTTTTGCTTG+TGG - Chr3:89082689-89082708 MsG0380016887.01.T01:intron 30.0%
!!! GACATGTATTTTGAAATGGA+GGG - Chr3:89084721-89084740 MsG0380016887.01.T01:intron 30.0%
!!! TTTGTTTTTGCTTGTGGAAA+TGG - Chr3:89082695-89082714 MsG0380016887.01.T01:intron 30.0%
AAACCTATACACGTTGTTCA+AGG + Chr3:89081283-89081302 None:intergenic 35.0%
AACAAAGATTAGGCTTCTGA+TGG - Chr3:89085528-89085547 MsG0380016887.01.T01:intron 35.0%
AACCTTAAACATAATTGCGC+TGG + Chr3:89084008-89084027 None:intergenic 35.0%
AACTAGATTAAGTTCCCGTT+TGG + Chr3:89081572-89081591 None:intergenic 35.0%
AAGTATAAGCAGCATTGCAT+CGG - Chr3:89084152-89084171 MsG0380016887.01.T01:intron 35.0%
AATGGAGGGAGTAAAGTTAA+AGG - Chr3:89084735-89084754 MsG0380016887.01.T01:intron 35.0%
ACTAAGTAGCGTACTTTCTT+TGG + Chr3:89085584-89085603 None:intergenic 35.0%
ACTGTAGAGAGATTAAACAG+AGG - Chr3:89085314-89085333 MsG0380016887.01.T01:intron 35.0%
AGATTAAACAGAGGTAGTGT+GGG - Chr3:89085323-89085342 MsG0380016887.01.T01:intron 35.0%
AGTTTGTCTACTTTCAGACA+TGG - Chr3:89083305-89083324 MsG0380016887.01.T01:CDS 35.0%
ATGGAGGGAGTAAAGTTAAA+GGG - Chr3:89084736-89084755 MsG0380016887.01.T01:intron 35.0%
ATGTCTGAAAGTAGACAAAC+TGG + Chr3:89083306-89083325 None:intergenic 35.0%
ATTGGAACCAAACATACACT+TGG - Chr3:89082608-89082627 MsG0380016887.01.T01:intron 35.0%
CAATTCAAAATTCGGGAATC+AGG + Chr3:89083817-89083836 None:intergenic 35.0%
CAGTGAAAACCAAACAACAT+TGG + Chr3:89082397-89082416 None:intergenic 35.0%
CTGTTGTACTCTTCTCATTT+AGG - Chr3:89084116-89084135 MsG0380016887.01.T01:intron 35.0%
GGGGATAGTTCCAATTTAAT+TGG - Chr3:89085379-89085398 MsG0380016887.01.T01:intron 35.0%
GGTGAGAAGTTACAGAAAAT+GGG - Chr3:89082752-89082771 MsG0380016887.01.T01:intron 35.0%
GTTAGGTAACCAATGTTGTT+TGG - Chr3:89082385-89082404 MsG0380016887.01.T01:intron 35.0%
GTTATCTTCTTCAACCTCTT+TGG - Chr3:89082172-89082191 MsG0380016887.01.T01:intron 35.0%
GTTTAAACTGGATGGAAATG+TGG + Chr3:89081808-89081827 None:intergenic 35.0%
TATAAGCCATATTCTGACTG+AGG + Chr3:89084381-89084400 None:intergenic 35.0%
TATTCAAAGCTGAACCAAAC+GGG - Chr3:89081555-89081574 MsG0380016887.01.T01:intron 35.0%
TATTCTCTTGGTTGTGGTAT+GGG + Chr3:89080482-89080501 None:intergenic 35.0%
TCTTCTTATTCTCTTGGTTG+TGG + Chr3:89080488-89080507 None:intergenic 35.0%
TGTAGCATACATTTATGCAC+CGG - Chr3:89082324-89082343 MsG0380016887.01.T01:intron 35.0%
TTATTCTCTTGGTTGTGGTA+TGG + Chr3:89080483-89080502 None:intergenic 35.0%
! AATTTTCTTTGTGAGTAGGG+AGG - Chr3:89080835-89080854 MsG0380016887.01.T01:intron 35.0%
! AGCATCAAATGTTTGTTGCA+TGG + Chr3:89084445-89084464 None:intergenic 35.0%
! AGCGCAATTATGTTTAAGGT+TGG - Chr3:89084007-89084026 MsG0380016887.01.T01:CDS 35.0%
! ATAATACTCAAAGCACCAAG+TGG + Chr3:89082364-89082383 None:intergenic 35.0%
! ATTTTCTTTGTGAGTAGGGA+GGG - Chr3:89080836-89080855 MsG0380016887.01.T01:intron 35.0%
! CAGAAGTAAGAGACTTTTCT+TGG + Chr3:89082835-89082854 None:intergenic 35.0%
! CTAAATGAGAAGAGTACAAC+AGG + Chr3:89084118-89084137 None:intergenic 35.0%
! CTTCTCATTTAGGACTATTC+TGG - Chr3:89084126-89084145 MsG0380016887.01.T01:intron 35.0%
! GAAGTAAGAGACTTTTCTTG+GGG + Chr3:89082833-89082852 None:intergenic 35.0%
! GCATCTTAGGAGTAATCTTT+TGG - Chr3:89084065-89084084 MsG0380016887.01.T01:intron 35.0%
! GCTTCATGGAGAATTGTTTT+TGG + Chr3:89081222-89081241 None:intergenic 35.0%
! GGTTTCATCACTGTTTTATC+TGG - Chr3:89084183-89084202 MsG0380016887.01.T01:intron 35.0%
! GTGCTTTGAGTATTATCGTT+AGG - Chr3:89082368-89082387 MsG0380016887.01.T01:intron 35.0%
! GTTGAGAAGCGTAAATCAAA+AGG + Chr3:89083199-89083218 None:intergenic 35.0%
! TAACTTTCCATTTCAGGTGT+CGG - Chr3:89082141-89082160 MsG0380016887.01.T01:intron 35.0%
! TGTGCTAGAAATATGGCTTT+TGG - Chr3:89082853-89082872 MsG0380016887.01.T01:CDS 35.0%
! TTCTAGAAAAGCTAGAAGCT+AGG + Chr3:89081252-89081271 None:intergenic 35.0%
!! AATTGTCGTTGGTGACATTT+CGG - Chr3:89081023-89081042 MsG0380016887.01.T01:intron 35.0%
!! AGCTTTATTGCAGTGATTGT+TGG - Chr3:89082286-89082305 MsG0380016887.01.T01:intron 35.0%
!! CAATTTGATTGGCTTCATCT+TGG - Chr3:89081959-89081978 MsG0380016887.01.T01:CDS 35.0%
!! CGACATATATTTTGAATCGG+AGG + Chr3:89084493-89084512 None:intergenic 35.0%
!! GCACTGTAGAGAATTGATTT+TGG + Chr3:89081137-89081156 None:intergenic 35.0%
!! GTATTGGCTCATTTCATGTT+GGG - Chr3:89082731-89082750 MsG0380016887.01.T01:intron 35.0%
!! TAATTTGTGAGTGTTTTGCG+AGG - Chr3:89081602-89081621 MsG0380016887.01.T01:intron 35.0%
!! TGAACCAAACACGTTGTTTT+TGG + Chr3:89081175-89081194 None:intergenic 35.0%
!! TGTATTGGCTCATTTCATGT+TGG - Chr3:89082730-89082749 MsG0380016887.01.T01:intron 35.0%
!!! AAGAAAGCATTTTGGTTTGC+AGG - Chr3:89083473-89083492 MsG0380016887.01.T01:intron 35.0%
!!! CGACATGTATTTTGAAATGG+AGG - Chr3:89084720-89084739 MsG0380016887.01.T01:intron 35.0%
!!! TCATGGAGAATTGTTTTTGG+AGG + Chr3:89081219-89081238 None:intergenic 35.0%
AAAAAAGGTCTTCAACGTGC+CGG - Chr3:89082026-89082045 MsG0380016887.01.T01:CDS 40.0%
AACAGAGAGAGAGGTAAAAG+AGG + Chr3:89082098-89082117 None:intergenic 40.0%
AACTAATCTTCCCCTTAACG+GGG + Chr3:89080390-89080409 None:intergenic 40.0%
AACTACGAGGTCACATATAC+CGG - Chr3:89084793-89084812 MsG0380016887.01.T01:intron 40.0%
ACAAGTATTCGGTACAAGAG+TGG + Chr3:89085554-89085573 None:intergenic 40.0%
ACAGAGAGAGAGGTAAAAGA+GGG + Chr3:89082097-89082116 None:intergenic 40.0%
AGCCAGCGCAATTATGTTTA+AGG - Chr3:89084003-89084022 MsG0380016887.01.T01:CDS 40.0%
AGCTAGGATTTGTAGCTTCA+TGG + Chr3:89081236-89081255 None:intergenic 40.0%
AGTAAAGTTAAAGGGGGTCT+TGG - Chr3:89084744-89084763 MsG0380016887.01.T01:intron 40.0%
ATCTTCTTCAACCTCTTTGG+TGG - Chr3:89082175-89082194 MsG0380016887.01.T01:intron 40.0%
ATTAATTGTGCAGTGGGGTT+GGG + Chr3:89081753-89081772 None:intergenic 40.0%
ATTTCTCTTGTACACAGCCT+CGG - Chr3:89082999-89083018 MsG0380016887.01.T01:intron 40.0%
CAAAACCCTAGAACAGAAAG+CGG - Chr3:89085414-89085433 MsG0380016887.01.T01:intron 40.0%
CAACTAATCTTCCCCTTAAC+GGG + Chr3:89080391-89080410 None:intergenic 40.0%
CAACTGAGCCAATCATTACT+TGG + Chr3:89083676-89083695 None:intergenic 40.0%
CGAGAATCCAAGTGTATGTT+TGG + Chr3:89082618-89082637 None:intergenic 40.0%
CGGTTCACCCTGTAATATTT+AGG - Chr3:89085434-89085453 MsG0380016887.01.T01:intron 40.0%
CTAGCCAAAAACAACGTGTT+TGG - Chr3:89081168-89081187 MsG0380016887.01.T01:intron 40.0%
CTGACTGAGGACTAAGAAAT+GGG + Chr3:89084368-89084387 None:intergenic 40.0%
CTTAGTCCTCAGTCAGAATA+TGG - Chr3:89084372-89084391 MsG0380016887.01.T01:intron 40.0%
GAACATTCATCAACCAGTAC+AGG + Chr3:89085639-89085658 None:intergenic 40.0%
GAGATTAAACAGAGGTAGTG+TGG - Chr3:89085322-89085341 MsG0380016887.01.T01:intron 40.0%
GAGCGATAGTTAATTGTCGT+TGG - Chr3:89081012-89081031 MsG0380016887.01.T01:intron 40.0%
GATGAAGCCAATCAAATTGC+TGG + Chr3:89081958-89081977 None:intergenic 40.0%
GCAACTAATCTTCCCCTTAA+CGG + Chr3:89080392-89080411 None:intergenic 40.0%
GGGTGAGAAGTTACAGAAAA+TGG - Chr3:89082751-89082770 MsG0380016887.01.T01:intron 40.0%
GTGAACAAGGCATAGTAGAT+TGG + Chr3:89083968-89083987 None:intergenic 40.0%
GTGATAGACTCTTGTATGGT+TGG - Chr3:89083901-89083920 MsG0380016887.01.T01:intron 40.0%
GTTATGACAACTGAGCAACA+TGG + Chr3:89083853-89083872 None:intergenic 40.0%
TAACGGTCAAAGTTGTGCAT+TGG + Chr3:89084537-89084556 None:intergenic 40.0%
TACACCTCCAGCAATTTGAT+TGG - Chr3:89081948-89081967 MsG0380016887.01.T01:CDS 40.0%
TACAGAAAATGGGCATGCTT+GGG - Chr3:89082762-89082781 MsG0380016887.01.T01:intron 40.0%
TATAAAGCTCTGTCATGGTG+TGG + Chr3:89084847-89084866 None:intergenic 40.0%
TATGTGACCTCGTAGTTACA+TGG + Chr3:89084790-89084809 None:intergenic 40.0%
TATTAATTGTGCAGTGGGGT+TGG + Chr3:89081754-89081773 None:intergenic 40.0%
TCTCCTTGAACAACGTGTAT+AGG - Chr3:89081277-89081296 MsG0380016887.01.T01:intron 40.0%
TCTCTGCTCATTCACTAATG+AGG + Chr3:89085214-89085233 None:intergenic 40.0%
TCTGACTGAGGACTAAGAAA+TGG + Chr3:89084369-89084388 None:intergenic 40.0%
TGACTGAGGACTAAGAAATG+GGG + Chr3:89084367-89084386 None:intergenic 40.0%
TGAGGACTTGCATCATCAAA+GGG + Chr3:89084287-89084306 None:intergenic 40.0%
TGGAGGGAGTAAAGTTAAAG+GGG - Chr3:89084737-89084756 MsG0380016887.01.T01:intron 40.0%
TGTGGTGATAGACTCTTGTA+TGG - Chr3:89083897-89083916 MsG0380016887.01.T01:intron 40.0%
TTACAGAAAATGGGCATGCT+TGG - Chr3:89082761-89082780 MsG0380016887.01.T01:intron 40.0%
TTGGATGTTATCTGGATGAG+AGG + Chr3:89083657-89083676 None:intergenic 40.0%
! AAGTGAGTTGACTTACTAGC+AGG + Chr3:89082065-89082084 None:intergenic 40.0%
! ACTGGTAATGATGCAGGAAA+TGG + Chr3:89083347-89083366 None:intergenic 40.0%
! ATATTAGTTTGGCCATAGCG+AGG + Chr3:89083063-89083082 None:intergenic 40.0%
! ATCTCTGTTTCTTCGCTACT+CGG + Chr3:89085241-89085260 None:intergenic 40.0%
! CAATTTTCTTAGGGCCTGTT+TGG - Chr3:89081085-89081104 MsG0380016887.01.T01:intron 40.0%
! TAATGATTGGCTCAGTTGAC+TGG - Chr3:89083678-89083697 MsG0380016887.01.T01:intron 40.0%
! TGACATTTCGGTGTAGTTTG+AGG - Chr3:89081035-89081054 MsG0380016887.01.T01:intron 40.0%
!! ACAGTTGTTACGACTTGGTT+TGG + Chr3:89081730-89081749 None:intergenic 40.0%
!! TATGGGGTTTAGTTCTTCAC+AGG - Chr3:89085798-89085817 MsG0380016887.01.T01:CDS 40.0%
!!! AAAGCATTTTGGTTTGCAGG+AGG - Chr3:89083476-89083495 MsG0380016887.01.T01:intron 40.0%
!!! TTTGCGAGGCTGTCATTTTA+GGG - Chr3:89081616-89081635 MsG0380016887.01.T01:intron 40.0%
!!! TTTTGCGAGGCTGTCATTTT+AGG - Chr3:89081615-89081634 MsG0380016887.01.T01:intron 40.0%
AAGAGCAGAGAAACTGAGCA+TGG - Chr3:89085262-89085281 MsG0380016887.01.T01:intron 45.0%
ACGATAGGGCATGTCGTAAA+TGG + Chr3:89080342-89080361 None:intergenic 45.0%
AGCATACATTTATGCACCGG+CGG - Chr3:89082327-89082346 MsG0380016887.01.T01:intron 45.0%
AGGTAAGGCCTAATGCACTT+CGG - Chr3:89084254-89084273 MsG0380016887.01.T01:intron 45.0%
CTCAATGAGTAACTCCAGAC+TGG + Chr3:89081656-89081675 None:intergenic 45.0%
CTCCTTGCGCAACATGTATA+GGG - Chr3:89080312-89080331 MsG0380016887.01.T01:CDS 45.0%
GAAGCCAATCAAATTGCTGG+AGG + Chr3:89081955-89081974 None:intergenic 45.0%
GATTGGAACCCTAGCTAGAA+TGG + Chr3:89081875-89081894 None:intergenic 45.0%
GCTGTGTACAAGAGAAATGC+TGG + Chr3:89082997-89083016 None:intergenic 45.0%
GGAGGGAGTAAAGTTAAAGG+GGG - Chr3:89084738-89084757 MsG0380016887.01.T01:intron 45.0%
GGGTGTCTTCTATGCATTGT+CGG - Chr3:89082782-89082801 MsG0380016887.01.T01:intron 45.0%
GGTAACAGTAACAGAGAGAG+AGG + Chr3:89082107-89082126 None:intergenic 45.0%
GGTGTCTTCTATGCATTGTC+GGG - Chr3:89082783-89082802 MsG0380016887.01.T01:intron 45.0%
GTCATGAGCGTAAAAGCGAT+TGG - Chr3:89083247-89083266 MsG0380016887.01.T01:intron 45.0%
GTGAACCGCTTTCTGTTCTA+GGG + Chr3:89085422-89085441 None:intergenic 45.0%
GTTGCTACCATGTAACTACG+AGG - Chr3:89084780-89084799 MsG0380016887.01.T01:intron 45.0%
TCTACGTACGAAGTTGTGCT+AGG - Chr3:89080421-89080440 MsG0380016887.01.T01:intron 45.0%
TCTCAGAAGCCAAACCAAAC+AGG + Chr3:89081102-89081121 None:intergenic 45.0%
TCTCCTTGCGCAACATGTAT+AGG - Chr3:89080311-89080330 MsG0380016887.01.T01:CDS 45.0%
TCTTGTATGGTTGGCATTGC+AGG - Chr3:89083910-89083929 MsG0380016887.01.T01:intron 45.0%
TGGCTAGTGTAGTGCTGTAT+TGG - Chr3:89082715-89082734 MsG0380016887.01.T01:intron 45.0%
TTAAACAGAGGTAGTGTGGG+AGG - Chr3:89085326-89085345 MsG0380016887.01.T01:intron 45.0%
TTCTTAGGGCCTGTTTGGTT+TGG - Chr3:89081090-89081109 MsG0380016887.01.T01:intron 45.0%
TTGGGACAGTTGTTACGACT+TGG + Chr3:89081735-89081754 None:intergenic 45.0%
! CTTCAACCTCTTTGGTGGAT+CGG - Chr3:89082180-89082199 MsG0380016887.01.T01:intron 45.0%
! GTATGGGTGATGATGTTGGT+AGG + Chr3:89080466-89080485 None:intergenic 45.0%
! GTTAAGTTTCTGGGCATCTG+TGG - Chr3:89083879-89083898 MsG0380016887.01.T01:intron 45.0%
! TGTGGTATGGGTGATGATGT+TGG + Chr3:89080470-89080489 None:intergenic 45.0%
! TTCATCTTGGCCGTTGTTTC+CGG - Chr3:89081972-89081991 MsG0380016887.01.T01:CDS 45.0%
!!! TATTAAATTTTAATAGTTTT+TGG + Chr3:89084341-89084360 None:intergenic 5.0%
AGCATTGCATCGGAGCTATG+TGG - Chr3:89084162-89084181 MsG0380016887.01.T01:intron 50.0%
ATAGCCTCCGACACCTGAAA+TGG + Chr3:89082151-89082170 None:intergenic 50.0%
ATGGTTGGCATTGCAGGCAT+TGG - Chr3:89083916-89083935 MsG0380016887.01.T01:intron 50.0%
CACATATACCGGTCTGCAAC+TGG - Chr3:89084804-89084823 MsG0380016887.01.T01:intron 50.0%
CTCTGTCATGGTGTGGTCTA+GGG + Chr3:89084840-89084859 None:intergenic 50.0%
GACCCTATACATGTTGCGCA+AGG + Chr3:89080317-89080336 None:intergenic 50.0%
GATCATCCCCGAAGTGCATT+AGG + Chr3:89084265-89084284 None:intergenic 50.0%
GGTAAGGCCTAATGCACTTC+GGG - Chr3:89084255-89084274 MsG0380016887.01.T01:intron 50.0%
GGTGAACCGCTTTCTGTTCT+AGG + Chr3:89085423-89085442 None:intergenic 50.0%
GTAAGGCCTAATGCACTTCG+GGG - Chr3:89084256-89084275 MsG0380016887.01.T01:intron 50.0%
TCCTCCAGTCAGTACAGGTA+AGG - Chr3:89084239-89084258 MsG0380016887.01.T01:intron 50.0%
TTGGTAGGCTTACGCATGAC+AGG + Chr3:89080451-89080470 None:intergenic 50.0%
TTGTATTGTGCGCCTCGCTA+TGG - Chr3:89083048-89083067 MsG0380016887.01.T01:intron 50.0%
! AAGAACGCGTGCAGCTTTTG+GGG - Chr3:89085360-89085379 MsG0380016887.01.T01:intron 50.0%
! ACAAGAACGCGTGCAGCTTT+TGG - Chr3:89085358-89085377 MsG0380016887.01.T01:intron 50.0%
! CAAGAACGCGTGCAGCTTTT+GGG - Chr3:89085359-89085378 MsG0380016887.01.T01:intron 50.0%
! CTTCAACGTGCCGGTCTTAA+CGG - Chr3:89082035-89082054 MsG0380016887.01.T01:intron 50.0%
! GAGACTTTTCTTGGGGTGCA+TGG + Chr3:89082826-89082845 None:intergenic 50.0%
! GTGCATTGGCATGTGTGAAG+TGG + Chr3:89084523-89084542 None:intergenic 50.0%
! GTTGTTTCCGGCGCTTTCAT+CGG - Chr3:89081984-89082003 MsG0380016887.01.T01:CDS 50.0%
! TAGGCCTTACCTGTACTGAC+TGG + Chr3:89084246-89084265 None:intergenic 50.0%
!! ATTTCAGGTGTCGGAGGCTA+TGG - Chr3:89082150-89082169 MsG0380016887.01.T01:intron 50.0%
!! CTTTCCATTTCAGGTGTCGG+AGG - Chr3:89082144-89082163 MsG0380016887.01.T01:intron 50.0%
!! GATGAAAGCGCCGGAAACAA+CGG + Chr3:89081985-89082004 None:intergenic 50.0%
!! TGGCTTTTGGCTGTTCAACC+AGG - Chr3:89082866-89082885 MsG0380016887.01.T01:CDS 50.0%
ACCATGCCGATCCACCAAAG+AGG + Chr3:89082189-89082208 None:intergenic 55.0%
CCAGATCCTCCAGTCAGTAC+AGG - Chr3:89084234-89084253 MsG0380016887.01.T01:intron 55.0%
GACTGGAGGATCTGGTACTC+TGG + Chr3:89084229-89084248 None:intergenic 55.0%
GCTCTGTCATGGTGTGGTCT+AGG + Chr3:89084841-89084860 None:intergenic 55.0%
GGTGTGGTCTAGGGAAGGTT+CGG + Chr3:89084831-89084850 None:intergenic 55.0%
GTCATGGTGTGGTCTAGGGA+AGG + Chr3:89084836-89084855 None:intergenic 55.0%
TGCATGGAGCACGATCTCAG+TGG + Chr3:89082810-89082829 None:intergenic 55.0%
! ACCTCTTTGGTGGATCGGCA+TGG - Chr3:89082185-89082204 MsG0380016887.01.T01:intron 55.0%
! AGTGGAGTAACAAGCACCGC+CGG + Chr3:89082346-89082365 None:intergenic 55.0%
! CTGCTGACTGAGGCTATTGG+TGG - Chr3:89082899-89082918 MsG0380016887.01.T01:CDS 55.0%
! CTGCTGCTGACTGAGGCTAT+TGG - Chr3:89082896-89082915 MsG0380016887.01.T01:CDS 55.0%
! GCGGTGCTTGTTACTCCACT+TGG - Chr3:89082346-89082365 MsG0380016887.01.T01:intron 55.0%
! TATGCTGCTGCTGCTGACTG+AGG - Chr3:89082889-89082908 MsG0380016887.01.T01:CDS 55.0%
!! AGCAGGAGTGCCGTTAAGAC+CGG + Chr3:89082048-89082067 None:intergenic 55.0%
!! CCTGTACTGACTGGAGGATC+TGG + Chr3:89084237-89084256 None:intergenic 55.0%
!! GCCTTACCTGTACTGACTGG+AGG + Chr3:89084243-89084262 None:intergenic 55.0%
CACAGCCTCGGCAATAGCTG+TGG - Chr3:89083011-89083030 MsG0380016887.01.T01:intron 60.0%
GAACGCCACAGCTATTGCCG+AGG + Chr3:89083019-89083038 None:intergenic 60.0%
GGTTCGGACCAGTTGCAGAC+CGG + Chr3:89084815-89084834 None:intergenic 60.0%
GTCAGCAGCAGCAGCATACC+TGG + Chr3:89082887-89082906 None:intergenic 60.0%
! GGGGGTCTTGGTGCAAGAGT+CGG - Chr3:89084756-89084775 MsG0380016887.01.T01:intron 60.0%
! TCCTGCGTCGACCCCGTTAA+GGG - Chr3:89080376-89080395 MsG0380016887.01.T01:CDS 60.0%
! TTCCTGCGTCGACCCCGTTA+AGG - Chr3:89080375-89080394 MsG0380016887.01.T01:CDS 60.0%
! CCTGCGTCGACCCCGTTAAG+GGG - Chr3:89080377-89080396 MsG0380016887.01.T01:CDS 65.0%
! GCTGGAGCCGATGAAAGCGC+CGG + Chr3:89081994-89082013 None:intergenic 65.0%
CCCCTTAACGGGGTCGACGC+AGG + Chr3:89080380-89080399 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 89080307 89085882 89080307 ID=MsG0380016887.01;Name=MsG0380016887.01
Chr3 mRNA 89080307 89085882 89080307 ID=MsG0380016887.01.T01;Parent=MsG0380016887.01;Name=MsG0380016887.01.T01;_AED=0.52;_eAED=0.58;_QI=0|0.42|0.62|0.87|1|1|8|0|306
Chr3 exon 89085732 89085882 89085732 ID=MsG0380016887.01.T01:exon:25048;Parent=MsG0380016887.01.T01
Chr3 exon 89083976 89084032 89083976 ID=MsG0380016887.01.T01:exon:25047;Parent=MsG0380016887.01.T01
Chr3 exon 89083800 89083890 89083800 ID=MsG0380016887.01.T01:exon:25046;Parent=MsG0380016887.01.T01
Chr3 exon 89083302 89083462 89083302 ID=MsG0380016887.01.T01:exon:25045;Parent=MsG0380016887.01.T01
Chr3 exon 89083064 89083173 89083064 ID=MsG0380016887.01.T01:exon:25044;Parent=MsG0380016887.01.T01
Chr3 exon 89082805 89082942 89082805 ID=MsG0380016887.01.T01:exon:25043;Parent=MsG0380016887.01.T01
Chr3 exon 89081934 89082051 89081934 ID=MsG0380016887.01.T01:exon:25042;Parent=MsG0380016887.01.T01
Chr3 exon 89080307 89080401 89080307 ID=MsG0380016887.01.T01:exon:25041;Parent=MsG0380016887.01.T01
Chr3 CDS 89085732 89085882 89085732 ID=MsG0380016887.01.T01:cds;Parent=MsG0380016887.01.T01
Chr3 CDS 89083976 89084032 89083976 ID=MsG0380016887.01.T01:cds;Parent=MsG0380016887.01.T01
Chr3 CDS 89083800 89083890 89083800 ID=MsG0380016887.01.T01:cds;Parent=MsG0380016887.01.T01
Chr3 CDS 89083302 89083462 89083302 ID=MsG0380016887.01.T01:cds;Parent=MsG0380016887.01.T01
Chr3 CDS 89083064 89083173 89083064 ID=MsG0380016887.01.T01:cds;Parent=MsG0380016887.01.T01
Chr3 CDS 89082805 89082942 89082805 ID=MsG0380016887.01.T01:cds;Parent=MsG0380016887.01.T01
Chr3 CDS 89081934 89082051 89081934 ID=MsG0380016887.01.T01:cds;Parent=MsG0380016887.01.T01
Chr3 CDS 89080307 89080401 89080307 ID=MsG0380016887.01.T01:cds;Parent=MsG0380016887.01.T01
Gene Sequence

>MsG0380016887.01.T01

ATGCTCTCCTTGCGCAACATGTATAGGGTCAACCATTTACGACATGCCCTATCGTCTTATGAGTTAGATTCCTGCGTCGACCCCGTTAAGGGGAAGATTAGTTGCAACATTCGCTCTACGTACGAAGTTGTGCTAGGTCATCCTGTCATGCGTGTCGGAGGCTATGGTTATCTTCTTCAACCTCTTTGGTGGATCGGCATGGTTACTATGATTGTTGGAGAAATTGCAAATTTTGTAGCATACATTTATGCACCGGCGGTGCTTGTTACTCCACTTGGTGCTTTGAGTATTATCGTTAGTGCTGTATTGGCTCATTTCATGTTGGGTGAGAAGTTACAGAAAATGGGCATGCTTGGGTGTCTTCTATGCATTGTCGGGTCCACTGAGATCGTGCTCCATGCACCCCAAGAAAAGTCTCTTACTTCTGTGCTAGAAATATGGCTTTTGGCTGTTCAACCAGCCTCGGCAATAGCTGTGGCGTTCTTTTTGATTTTGTATTGTGCGCCTCGCTATGGCCAAACTAATATCTTCGTTTACATTGGAATATGCTCCATAATTGGATCATTGACTGTCATGAGCGTAAAAGCGATTGGCATTGCTATTAAACTTACATTAGATGGTGCAAACCAGTTTGTCTACTTTCAGACATGGATTTTTACAATGGTCGCCATTTCCTGCATCATTACCAGTTTAAATTACCTTAATATGGACTATTCTGGACAAAGTATAAGCAGCATTGCATCGGAGCTATGTGGTTTCATCACTGTTTTATCTGGAACAACTGTATTGCACAGTACCAGAGTACCAGATCCTCCAGTCAGTACAGTTGATAGATCTATGGGGTTTAGTTCTTCACAGGAAATTACTACTGTAAATATGTATTGTCATGGTGATGACTGTAAAGTGAACCAAGCCTTCTAG
Protein sequence

>MsG0380016887.01.T01

MLSLRNMYRVNHLRHALSSYELDSCVDPVKGKISCNIRSTYEVVLGHPVMRVGGYGYLLQPLWWIGMVTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLGEKLQKMGMLGCLLCIVGSTEIVLHAPQEKSLTSVLEIWLLAVQPASAIAVAFFLILYCAPRYGQTNIFVYIGICSIIGSLTVMSVKAIGIAIKLTLDGANQFVYFQTWIFTMVAISCIITSLNYLNMDYSGQSISSIASELCGFITVLSGTTVLHSTRVPDPPVSTVDRSMGFSSSQEITTVNMYCHGDDCKVNQAF*