AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029504.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029504.01.T01 MTR_5g087590 98.962 289 3 0 1 289 1 289 0.0 593
MsG0580029504.01.T01 MTR_6g043740 30.380 158 100 4 139 288 105 260 4.47e-13 68.6
MsG0580029504.01.T01 MTR_6g037340 30.242 248 139 9 61 297 43 267 6.50e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029504.01.T01 AT3G55360 82.069 290 50 2 1 289 1 289 1.39e-180 500
MsG0580029504.01.T01 AT5G16010 29.231 130 90 2 139 267 102 230 4.50e-12 65.5

Find 100 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATGTAGGTTTGAAAATT+TGG 0.141710 5:+97833924 None:intergenic
CCATTACGCCAAACGAATTC+TGG 0.194582 5:-97831697 MsG0580029504.01.T01:CDS
GAATTAGAAGTACCTGAATT+AGG 0.237978 5:+97833867 None:intergenic
TTCATTTGAAGGTCACTTAC+AGG 0.239953 5:+97831549 None:intergenic
ATGAAGATAGGCTTTGGATT+TGG 0.247840 5:-97831531 MsG0580029504.01.T01:CDS
TCCGCAACTGTGCTTATTAC+TGG 0.262844 5:-97831620 MsG0580029504.01.T01:CDS
TAATTGATAACCTGTTTATA+TGG 0.282681 5:-97834065 MsG0580029504.01.T01:five_prime_UTR
TGAAGATAGGCTTTGGATTT+GGG 0.293757 5:-97831530 MsG0580029504.01.T01:CDS
AGTGGAAGAGAGATTGTTAA+AGG 0.294260 5:-97833419 MsG0580029504.01.T01:CDS
GTCACTTACAGGGGTGTATA+GGG 0.307392 5:+97831560 None:intergenic
TTTATAGGTGCTAGTTCTAT+TGG 0.310867 5:-97833547 MsG0580029504.01.T01:intron
GGCTACTGTAGCAGATTTAC+AGG 0.311251 5:-97833180 MsG0580029504.01.T01:CDS
CAAGTCAATGTATGCATTAA+TGG 0.311878 5:+97834017 None:intergenic
CGCCTTTGTAGCCGAAATAC+TGG 0.312425 5:+97831769 None:intergenic
TGAAGGTCACTGTGGTTTCT+AGG 0.313807 5:-97833442 MsG0580029504.01.T01:CDS
GGTCACTTACAGGGGTGTAT+AGG 0.327530 5:+97831559 None:intergenic
GTCCTTGAACGTTACAGTTA+AGG 0.339195 5:+97831887 None:intergenic
CCCGTTGTCTACCAGTATTT+CGG 0.357053 5:-97831780 MsG0580029504.01.T01:CDS
ATGTATGCATTAATGGAATA+TGG 0.358460 5:+97834024 None:intergenic
CTTCAAATGAAGATAGGCTT+TGG 0.359794 5:-97831537 MsG0580029504.01.T01:CDS
TGTGCTTATTACTGGACATT+TGG 0.362923 5:-97831612 MsG0580029504.01.T01:CDS
GAAGATTCCTCAGTATAATA+TGG 0.369628 5:+97831478 None:intergenic
AAATGTTTCCAGAATTCGTT+TGG 0.370339 5:+97831689 None:intergenic
TGCATTAATGGAATATGGTT+AGG 0.379561 5:+97834029 None:intergenic
ATTGCAACGCAAACCATTGC+CGG 0.389032 5:-97831348 MsG0580029504.01.T01:CDS
CAAAGCCTATCTTCATTTGA+AGG 0.389390 5:+97831538 None:intergenic
TTACACTCTATCCCTAATTC+AGG 0.391598 5:-97833879 MsG0580029504.01.T01:intron
CCAGAATTCGTTTGGCGTAA+TGG 0.393749 5:+97831697 None:intergenic
CTTGACACTTCCTGTCCAAC+CGG 0.402666 5:-97831982 MsG0580029504.01.T01:CDS
TTGGTGAAGTGGGTGTGTTT+TGG 0.404400 5:-97833474 MsG0580029504.01.T01:five_prime_UTR
CCGAAATACTGGTAGACAAC+GGG 0.405837 5:+97831780 None:intergenic
AACCTTAACTGTAACGTTCA+AGG 0.415365 5:-97831889 MsG0580029504.01.T01:CDS
AGGAATCTTCGTGGACCTGC+TGG 0.422036 5:-97831465 MsG0580029504.01.T01:CDS
AATTAGAAGTACCTGAATTA+GGG 0.433323 5:+97833868 None:intergenic
TCCTTTGATCCCGGTTGGAC+AGG 0.438015 5:+97831972 None:intergenic
GGACAACTAACCATATAAAC+AGG 0.446307 5:+97834055 None:intergenic
CATTAATGCATACATTGACT+TGG 0.452248 5:-97834016 MsG0580029504.01.T01:five_prime_UTR
AGTGACCTTCAAATGAAGAT+AGG 0.453400 5:-97831543 MsG0580029504.01.T01:CDS
TAAGAAAGAAAGCAAAATGT+AGG 0.456987 5:+97833911 None:intergenic
AGTGTGTTGCTGACACTGTT+TGG 0.457987 5:-97833493 MsG0580029504.01.T01:five_prime_UTR
GAATTTAAGATGGGGAAGGA+TGG 0.459680 5:+97833960 None:intergenic
AACAGAGATTTACCAGTGGC+TGG 0.467148 5:-97831379 MsG0580029504.01.T01:CDS
AGTGTCAAGCGCTGCCTTGA+TGG 0.477346 5:+97831996 None:intergenic
TGATATCCACCTTCTCCAGC+AGG 0.491305 5:+97831450 None:intergenic
TCCTGTCCAACCGGGATCAA+AGG 0.492864 5:-97831973 MsG0580029504.01.T01:CDS
GCTGACACTGTTTGGTGAAG+TGG 0.501843 5:-97833485 MsG0580029504.01.T01:five_prime_UTR
GACGGCAAGAAATATATAAC+CGG 0.506359 5:+97831329 None:intergenic
GGATGGATTAATGTGAGGTA+TGG 0.506522 5:+97833977 None:intergenic
ACTGTAACGTTCAAGGACTT+AGG 0.507815 5:-97831882 MsG0580029504.01.T01:CDS
GCATTAATGGAATATGGTTA+GGG 0.518328 5:+97834030 None:intergenic
TTAGTGAACTACAAAAGAAA+AGG 0.519114 5:+97831239 None:intergenic
AAGAAATATATAACCGGCAA+TGG 0.521615 5:+97831335 None:intergenic
TACATGGCATATGTCTGCAC+AGG 0.523747 5:+97831732 None:intergenic
GAACTACAAAAGAAAAGGTA+AGG 0.529516 5:+97831244 None:intergenic
TCATTTGAAGGTCACTTACA+GGG 0.529579 5:+97831550 None:intergenic
CTGACACTGTTTGGTGAAGT+GGG 0.530344 5:-97833484 MsG0580029504.01.T01:five_prime_UTR
AGACATATGCCATGTACTAT+TGG 0.530822 5:-97831725 MsG0580029504.01.T01:CDS
CTTCGTGGACCTGCTGGAGA+AGG 0.532866 5:-97831459 MsG0580029504.01.T01:CDS
GTTGCGGAAAACATTGGAAA+GGG 0.533035 5:+97831635 None:intergenic
AAAACACAGGCGCTTGAAGA+AGG 0.535156 5:-97831274 MsG0580029504.01.T01:CDS
GTCACTGTGGTTTCTAGGAG+TGG 0.545999 5:-97833437 MsG0580029504.01.T01:CDS
CAATGTTGAAGCCCAGCCAC+TGG 0.554738 5:+97831367 None:intergenic
AGCACAGTTGCGGAAAACAT+TGG 0.558230 5:+97831629 None:intergenic
ACGGGGAAGTAGTAGAAGAC+TGG 0.561573 5:+97831798 None:intergenic
CGTGGACCTGCTGGAGAAGG+TGG 0.567577 5:-97831456 MsG0580029504.01.T01:CDS
ACAGAGATTTACCAGTGGCT+GGG 0.575149 5:-97831378 MsG0580029504.01.T01:CDS
ATTATACTGAGGAATCTTCG+TGG 0.579382 5:-97831474 MsG0580029504.01.T01:CDS
GGAAGAGAGATTGTTAAAGG+TGG 0.583648 5:-97833416 MsG0580029504.01.T01:CDS
TACCAGTATTTCGGCTACAA+AGG 0.587449 5:-97831771 MsG0580029504.01.T01:CDS
AGTCTCAATGACTATACAAG+TGG 0.590878 5:-97831921 MsG0580029504.01.T01:CDS
TCCAGTAATAAGCACAGTTG+CGG 0.593571 5:+97831619 None:intergenic
TTGACACTTCCTGTCCAACC+GGG 0.596671 5:-97831981 MsG0580029504.01.T01:CDS
TAATGGAATATGGTTAGGGT+AGG 0.602361 5:+97834034 None:intergenic
TTTATTGCCATATTATACTG+AGG 0.605844 5:-97831485 MsG0580029504.01.T01:CDS
CATTTGAAGGTCACTTACAG+GGG 0.612750 5:+97831551 None:intergenic
ATGGAAACACCAATAGTACA+TGG 0.615120 5:+97831716 None:intergenic
TGGAGAATTTAAGATGGGGA+AGG 0.618654 5:+97833956 None:intergenic
ACTGGGCTCTTGCAAAACAC+AGG 0.618820 5:-97831287 MsG0580029504.01.T01:CDS
TCACTTACAGGGGTGTATAG+GGG 0.622126 5:+97831561 None:intergenic
AAGACTGGATAGAGAAGCAA+CGG 0.623023 5:+97831813 None:intergenic
AGTTGCGGAAAACATTGGAA+AGG 0.624288 5:+97831634 None:intergenic
GGTCATGATAAAAGCAGCGA+CGG 0.625472 5:+97831311 None:intergenic
TGGAAAGGGGAGAAGTTGCA+TGG 0.628703 5:+97831649 None:intergenic
GGGAAGGATGGATTAATGTG+AGG 0.629378 5:+97833972 None:intergenic
ACTCAAAGAAGAAAAGCGTA+CGG 0.636330 5:+97831844 None:intergenic
GCCGAAATACTGGTAGACAA+CGG 0.644998 5:+97831779 None:intergenic
TTACAGGGGTGTATAGGGGA+TGG 0.652446 5:+97831565 None:intergenic
AAAATGGAGAATTTAAGATG+GGG 0.665263 5:+97833952 None:intergenic
AGCGTACGGTAAGAAACTTG+TGG 0.676112 5:+97831858 None:intergenic
TTGCGGAAAACATTGGAAAG+GGG 0.678424 5:+97831636 None:intergenic
TACTGTAGCAGATTTACAGG+AGG 0.684551 5:-97833177 MsG0580029504.01.T01:CDS
GGTATGGTTAGTACAAGATG+AGG 0.691398 5:+97833993 None:intergenic
ACATGGCATATGTCTGCACA+GGG 0.710473 5:+97831733 None:intergenic
CGAAATACTGGTAGACAACG+GGG 0.718792 5:+97831781 None:intergenic
TATTGAAGAGAAAGCCACGT+GGG 0.729587 5:+97831424 None:intergenic
TGGCATATGTCTGCACAGGG+TGG 0.739067 5:+97831736 None:intergenic
TTTGAAGATGAAGGTCACTG+TGG 0.749871 5:-97833450 MsG0580029504.01.T01:exon
ATATTGAAGAGAAAGCCACG+TGG 0.764210 5:+97831423 None:intergenic
ATACAACAGAGATTTACCAG+TGG 0.768046 5:-97831383 MsG0580029504.01.T01:CDS
GGTGGATATCAAATCCCACG+TGG 0.798768 5:-97831438 MsG0580029504.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAACTATATAAATCA+TGG + Chr5:97832097-97832116 None:intergenic 10.0%
!!! AAATTACTTTTTTTTTCTTT+TGG + Chr5:97832563-97832582 None:intergenic 10.0%
!!! ATAGGAAATAAATTATATTT+TGG - Chr5:97832043-97832062 MsG0580029504.01.T01:intron 10.0%
!! TTATTACATACTAAATAGTA+AGG + Chr5:97832405-97832424 None:intergenic 15.0%
!!! AATTTGTTTTTGTGTTTTTT+TGG - Chr5:97831738-97831757 MsG0580029504.01.T01:CDS 15.0%
!!! CAATATGATTTCTATTTTTT+TGG - Chr5:97831500-97831519 MsG0580029504.01.T01:CDS 15.0%
!!! TTTTATATTGTGAAAAAAAG+TGG + Chr5:97832937-97832956 None:intergenic 15.0%
!! AAAATGTAGGTTTGAAAATT+TGG + Chr5:97831390-97831409 None:intergenic 20.0%
!! ATAAAATGATCTTGAAGTTT+GGG - Chr5:97832951-97832970 MsG0580029504.01.T01:intron 20.0%
!! ATCATATTGAAAAACCTAAT+TGG + Chr5:97831489-97831508 None:intergenic 20.0%
!! ATTACTTTCTTACAAAAGAT+TGG - Chr5:97831647-97831666 MsG0580029504.01.T01:CDS 20.0%
!! TAAGAAAGCCATAAAATAAT+AGG + Chr5:97833164-97833183 None:intergenic 20.0%
!! TATAAAATGATCTTGAAGTT+TGG - Chr5:97832950-97832969 MsG0580029504.01.T01:intron 20.0%
!! TGAAAATTTGGATAGAAAAA+TGG + Chr5:97831378-97831397 None:intergenic 20.0%
!!! AAAAATGGAGAATTTAAGAT+GGG + Chr5:97831363-97831382 None:intergenic 20.0%
!!! ATCCAATTCCTATTATTTTA+TGG - Chr5:97833153-97833172 MsG0580029504.01.T01:intron 20.0%
!!! ATTTGTTACAATATTGGTAT+CGG + Chr5:97832492-97832511 None:intergenic 20.0%
!!! TAATTGATAACCTGTTTATA+TGG - Chr5:97831246-97831265 MsG0580029504.01.T01:CDS 20.0%
!!! TTTTATTTTTTTTTTGCCAC+AGG - Chr5:97832110-97832129 MsG0580029504.01.T01:intron 20.0%
!!! TTTTGTAAGAAAGTAATAGT+GGG + Chr5:97831644-97831663 None:intergenic 20.0%
! AAAAAAAGTGGAACTTATGA+TGG + Chr5:97832925-97832944 None:intergenic 25.0%
! AAAAAAGTGGAACTTATGAT+GGG + Chr5:97832924-97832943 None:intergenic 25.0%
! AGCCATAAAATAATAGGAAT+TGG + Chr5:97833158-97833177 None:intergenic 25.0%
! ATGTATGCATTAATGGAATA+TGG + Chr5:97831290-97831309 None:intergenic 25.0%
! CAAACTTTATCGAAGAAAAT+TGG + Chr5:97831598-97831617 None:intergenic 25.0%
! CCAATATTGTAACAAATACT+TGG - Chr5:97832495-97832514 MsG0580029504.01.T01:intron 25.0%
! GAAAAATGGAGAATTTAAGA+TGG + Chr5:97831364-97831383 None:intergenic 25.0%
! TAAGAAAGAAAGCAAAATGT+AGG + Chr5:97831403-97831422 None:intergenic 25.0%
! TCTGCAATCCAATAAAAATT+GGG + Chr5:97833090-97833109 None:intergenic 25.0%
! TTAGAATGAAAGTTTCTTCT+TGG - Chr5:97832983-97833002 MsG0580029504.01.T01:intron 25.0%
! TTAGTGAACTACAAAAGAAA+AGG + Chr5:97834075-97834094 None:intergenic 25.0%
! TTCTGCAATCCAATAAAAAT+TGG + Chr5:97833091-97833110 None:intergenic 25.0%
! TTGAAATTGTTTACAACCTT+GGG - Chr5:97832657-97832676 MsG0580029504.01.T01:intron 25.0%
! TTTATTGCCATATTATACTG+AGG - Chr5:97833826-97833845 MsG0580029504.01.T01:intron 25.0%
! TTTGTAAGAAAGTAATAGTG+GGG + Chr5:97831643-97831662 None:intergenic 25.0%
!! AAAATGGAGAATTTAAGATG+GGG + Chr5:97831362-97831381 None:intergenic 25.0%
!! ACAGTTAACCCAATTTTTAT+TGG - Chr5:97833079-97833098 MsG0580029504.01.T01:intron 25.0%
!! CAACAGTAAACAGAAAATTT+TGG + Chr5:97831528-97831547 None:intergenic 25.0%
!! CCAAGTATTTGTTACAATAT+TGG + Chr5:97832498-97832517 None:intergenic 25.0%
!! CTTTTCTTCTTTGAGTATTT+GGG - Chr5:97833474-97833493 MsG0580029504.01.T01:five_prime_UTR 25.0%
!! CTTTTGTAAGAAAGTAATAG+TGG + Chr5:97831645-97831664 None:intergenic 25.0%
!! TTTTCTTCTTTGAGTATTTG+GGG - Chr5:97833475-97833494 MsG0580029504.01.T01:five_prime_UTR 25.0%
!! TTTTGAACTTTTGATCTCTT+AGG - Chr5:97832013-97832032 MsG0580029504.01.T01:intron 25.0%
!! TTTTTGTAATTCAGAACAAC+AGG + Chr5:97833369-97833388 None:intergenic 25.0%
!!! AATTAGAAGTACCTGAATTA+GGG + Chr5:97831446-97831465 None:intergenic 25.0%
!!! ATTCTTCTACTTTTCCAATT+AGG - Chr5:97831472-97831491 MsG0580029504.01.T01:CDS 25.0%
!!! CATATTTTTTCTTTTGAGAG+AGG + Chr5:97833200-97833219 None:intergenic 25.0%
!!! GTGTTTTTTTGGAGTTTTAT+AGG - Chr5:97831749-97831768 MsG0580029504.01.T01:CDS 25.0%
AAAAAGTGGAACTTATGATG+GGG + Chr5:97832923-97832942 None:intergenic 30.0%
AAATGTTTCCAGAATTCGTT+TGG + Chr5:97833625-97833644 None:intergenic 30.0%
AAGAAATATATAACCGGCAA+TGG + Chr5:97833979-97833998 None:intergenic 30.0%
ACAACAATGAATCTACTATG+AGG + Chr5:97832375-97832394 None:intergenic 30.0%
CAAATCACGTTAATGAGTTA+TGG + Chr5:97833265-97833284 None:intergenic 30.0%
CAAGTCAATGTATGCATTAA+TGG + Chr5:97831297-97831316 None:intergenic 30.0%
GAACTACAAAAGAAAAGGTA+AGG + Chr5:97834070-97834089 None:intergenic 30.0%
GAAGATTCCTCAGTATAATA+TGG + Chr5:97833836-97833855 None:intergenic 30.0%
GCAAATAAACTGATTGTGTT+TGG - Chr5:97832679-97832698 MsG0580029504.01.T01:intron 30.0%
GCATTAATGGAATATGGTTA+GGG + Chr5:97831284-97831303 None:intergenic 30.0%
GTAACAAATACTTGGATTCT+TGG - Chr5:97832503-97832522 MsG0580029504.01.T01:intron 30.0%
GTTGAAATTGTTTACAACCT+TGG - Chr5:97832656-97832675 MsG0580029504.01.T01:intron 30.0%
TCGATGAAAACAATGAATGT+GGG + Chr5:97831572-97831591 None:intergenic 30.0%
TGCATTAATGGAATATGGTT+AGG + Chr5:97831285-97831304 None:intergenic 30.0%
TGGAAAAGTAGAAGAATGAA+GGG + Chr5:97831469-97831488 None:intergenic 30.0%
TTCGATGAAAACAATGAATG+TGG + Chr5:97831573-97831592 None:intergenic 30.0%
TTGGAAAAGTAGAAGAATGA+AGG + Chr5:97831470-97831489 None:intergenic 30.0%
TTGGATGAAATGAATTGAAC+TGG + Chr5:97833139-97833158 None:intergenic 30.0%
! CATTAATGCATACATTGACT+TGG - Chr5:97831295-97831314 MsG0580029504.01.T01:CDS 30.0%
! GCTTTTCTTCTTTGAGTATT+TGG - Chr5:97833473-97833492 MsG0580029504.01.T01:five_prime_UTR 30.0%
! TTACATTTGAGACACTCAAA+CGG + Chr5:97832709-97832728 None:intergenic 30.0%
!! GAATTAGAAGTACCTGAATT+AGG + Chr5:97831447-97831466 None:intergenic 30.0%
!! GATCTCTTAGGTTGATTTAT+AGG - Chr5:97832025-97832044 MsG0580029504.01.T01:intron 30.0%
!! TTTATAGGTGCTAGTTCTAT+TGG - Chr5:97831764-97831783 MsG0580029504.01.T01:CDS 30.0%
!!! TGTTTTGGTTTTGAAGATGA+AGG - Chr5:97831852-97831871 MsG0580029504.01.T01:CDS 30.0%
!!! TTAACCCACTTTTTGTGTTT+TGG - Chr5:97833016-97833035 MsG0580029504.01.T01:intron 30.0%
AAAGATTGGAACTTGACATG+TGG - Chr5:97831661-97831680 MsG0580029504.01.T01:CDS 35.0%
AACCACGTGAAAGTAAAAAG+TGG + Chr5:97832588-97832607 None:intergenic 35.0%
AACCTTAACTGTAACGTTCA+AGG - Chr5:97833422-97833441 MsG0580029504.01.T01:CDS 35.0%
AAGATTGGAACTTGACATGT+GGG - Chr5:97831662-97831681 MsG0580029504.01.T01:CDS 35.0%
AATTCAATGCAACCTAGAGA+CGG + Chr5:97833242-97833261 None:intergenic 35.0%
ACAATCAGTTTATTTGCCCA+AGG + Chr5:97832676-97832695 None:intergenic 35.0%
ACAGACCAAAACACAAAAAG+TGG + Chr5:97833024-97833043 None:intergenic 35.0%
ACTGACATTTAAATGTGAGG+TGG + Chr5:97832785-97832804 None:intergenic 35.0%
AGACATATGCCATGTACTAT+TGG - Chr5:97833586-97833605 MsG0580029504.01.T01:intron 35.0%
AGTCTCAATGACTATACAAG+TGG - Chr5:97833390-97833409 MsG0580029504.01.T01:intron 35.0%
AGTGACCTTCAAATGAAGAT+AGG - Chr5:97833768-97833787 MsG0580029504.01.T01:intron 35.0%
AGTGGAAGAGAGATTGTTAA+AGG - Chr5:97831892-97831911 MsG0580029504.01.T01:CDS 35.0%
ATACAACAGAGATTTACCAG+TGG - Chr5:97833928-97833947 MsG0580029504.01.T01:five_prime_UTR 35.0%
ATATCCAACACTAGTAGAAC+AGG + Chr5:97832465-97832484 None:intergenic 35.0%
ATCAAAGGCTTATGTCTTGA+TGG - Chr5:97832254-97832273 MsG0580029504.01.T01:intron 35.0%
ATGGAAACACCAATAGTACA+TGG + Chr5:97833598-97833617 None:intergenic 35.0%
ATGTGGGTCATCGTTAAATT+AGG + Chr5:97831556-97831575 None:intergenic 35.0%
ATTATACTGAGGAATCTTCG+TGG - Chr5:97833837-97833856 MsG0580029504.01.T01:intron 35.0%
CAAAGCCTATCTTCATTTGA+AGG + Chr5:97833776-97833795 None:intergenic 35.0%
CAGACCAAAACACAAAAAGT+GGG + Chr5:97833023-97833042 None:intergenic 35.0%
CGTGGTTTCTATTCTAATGT+TGG - Chr5:97832601-97832620 MsG0580029504.01.T01:intron 35.0%
CTTCAAATGAAGATAGGCTT+TGG - Chr5:97833774-97833793 MsG0580029504.01.T01:intron 35.0%
CTTGACATGTGGGTATTATA+TGG - Chr5:97831672-97831691 MsG0580029504.01.T01:CDS 35.0%
GACGGCAAGAAATATATAAC+CGG + Chr5:97833985-97834004 None:intergenic 35.0%
GCCTTTGATCAACTTAACTT+CGG + Chr5:97832243-97832262 None:intergenic 35.0%
GGACAACTAACCATATAAAC+AGG + Chr5:97831259-97831278 None:intergenic 35.0%
GTGACTGACATTTAAATGTG+AGG + Chr5:97832788-97832807 None:intergenic 35.0%
TAATGGAATATGGTTAGGGT+AGG + Chr5:97831280-97831299 None:intergenic 35.0%
TCATTTGAAGGTCACTTACA+GGG + Chr5:97833764-97833783 None:intergenic 35.0%
TGCTATCAATTATCATCACC+CGG + Chr5:97832351-97832370 None:intergenic 35.0%
TGTGATGTATTTCGAGCTTT+AGG - Chr5:97832320-97832339 MsG0580029504.01.T01:intron 35.0%
TGTGCTTATTACTGGACATT+TGG - Chr5:97833699-97833718 MsG0580029504.01.T01:intron 35.0%
TTACACTCTATCCCTAATTC+AGG - Chr5:97831432-97831451 MsG0580029504.01.T01:CDS 35.0%
TTCATTTGAAGGTCACTTAC+AGG + Chr5:97833765-97833784 None:intergenic 35.0%
! ACTCAAAGAAGAAAAGCGTA+CGG + Chr5:97833470-97833489 None:intergenic 35.0%
! GTGTTTGGAAATCCTTTTGA+GGG + Chr5:97832901-97832920 None:intergenic 35.0%
! TGCTTTTATCATGACCAACT+GGG - Chr5:97834007-97834026 MsG0580029504.01.T01:five_prime_UTR 35.0%
! TTGCAGCTTTGTGAAAATCA+CGG + Chr5:97832810-97832829 None:intergenic 35.0%
!! ACCGAAGTTAAGTTGATCAA+AGG - Chr5:97832239-97832258 MsG0580029504.01.T01:intron 35.0%
!! ATGAAGATAGGCTTTGGATT+TGG - Chr5:97833780-97833799 MsG0580029504.01.T01:intron 35.0%
!! TGAAGATAGGCTTTGGATTT+GGG - Chr5:97833781-97833800 MsG0580029504.01.T01:intron 35.0%
AAGACTGGATAGAGAAGCAA+CGG + Chr5:97833501-97833520 None:intergenic 40.0%
AAGGCTTATGTCTTGATGGA+TGG - Chr5:97832258-97832277 MsG0580029504.01.T01:intron 40.0%
ACTGTAACGTTCAAGGACTT+AGG - Chr5:97833429-97833448 MsG0580029504.01.T01:CDS 40.0%
AGTTGCGGAAAACATTGGAA+AGG + Chr5:97833680-97833699 None:intergenic 40.0%
ATATTGAAGAGAAAGCCACG+TGG + Chr5:97833891-97833910 None:intergenic 40.0%
CAATCCACTAAGCATGTGTT+TGG - Chr5:97832737-97832756 MsG0580029504.01.T01:intron 40.0%
CATTTGAAGGTCACTTACAG+GGG + Chr5:97833763-97833782 None:intergenic 40.0%
GACATTTAAATGTGAGGTGG+AGG + Chr5:97832782-97832801 None:intergenic 40.0%
GGAAGAGAGATTGTTAAAGG+TGG - Chr5:97831895-97831914 MsG0580029504.01.T01:CDS 40.0%
GGTATGGTTAGTACAAGATG+AGG + Chr5:97831321-97831340 None:intergenic 40.0%
GTCCTTGAACGTTACAGTTA+AGG + Chr5:97833427-97833446 None:intergenic 40.0%
GTTGCGGAAAACATTGGAAA+GGG + Chr5:97833679-97833698 None:intergenic 40.0%
TACCAGTATTTCGGCTACAA+AGG - Chr5:97833540-97833559 MsG0580029504.01.T01:five_prime_UTR 40.0%
TACTGTAGCAGATTTACAGG+AGG - Chr5:97832134-97832153 MsG0580029504.01.T01:intron 40.0%
TATTGAAGAGAAAGCCACGT+GGG + Chr5:97833890-97833909 None:intergenic 40.0%
TCCAGTAATAAGCACAGTTG+CGG + Chr5:97833695-97833714 None:intergenic 40.0%
TTGCGGAAAACATTGGAAAG+GGG + Chr5:97833678-97833697 None:intergenic 40.0%
TTTAAATGTGAGGTGGAGGT+AGG + Chr5:97832778-97832797 None:intergenic 40.0%
TTTGAAGATGAAGGTCACTG+TGG - Chr5:97831861-97831880 MsG0580029504.01.T01:CDS 40.0%
! CAAACACATGCTTAGTGGAT+TGG + Chr5:97832739-97832758 None:intergenic 40.0%
! GAATTTAAGATGGGGAAGGA+TGG + Chr5:97831354-97831373 None:intergenic 40.0%
! GGTGTTTGGAAATCCTTTTG+AGG + Chr5:97832902-97832921 None:intergenic 40.0%
! TGGAGAATTTAAGATGGGGA+AGG + Chr5:97831358-97831377 None:intergenic 40.0%
!! CTGCTTTTATCATGACCAAC+TGG - Chr5:97834006-97834025 MsG0580029504.01.T01:five_prime_UTR 40.0%
!! GGATGGATTAATGTGAGGTA+TGG + Chr5:97831337-97831356 None:intergenic 40.0%
!! TAGCTTTGAGATCCCTCAAA+AGG - Chr5:97832886-97832905 MsG0580029504.01.T01:intron 40.0%
!! TTTCGAGCTTTAGGTTATGC+CGG - Chr5:97832329-97832348 MsG0580029504.01.T01:intron 40.0%
!!! ACTGTGCTGTGAGTTTTAAG+TGG + Chr5:97833064-97833083 None:intergenic 40.0%
!!! CTCCACTTTTTACTTTCACG+TGG - Chr5:97832583-97832602 MsG0580029504.01.T01:intron 40.0%
AAAACACAGGCGCTTGAAGA+AGG - Chr5:97834037-97834056 MsG0580029504.01.T01:five_prime_UTR 45.0%
AAATCTGCTACAGTAGCCTG+TGG + Chr5:97832129-97832148 None:intergenic 45.0%
AACAGAGATTTACCAGTGGC+TGG - Chr5:97833932-97833951 MsG0580029504.01.T01:five_prime_UTR 45.0%
ACAGAGATTTACCAGTGGCT+GGG - Chr5:97833933-97833952 MsG0580029504.01.T01:five_prime_UTR 45.0%
ACATGGCATATGTCTGCACA+GGG + Chr5:97833581-97833600 None:intergenic 45.0%
AGCACAGTTGCGGAAAACAT+TGG + Chr5:97833685-97833704 None:intergenic 45.0%
AGCGTACGGTAAGAAACTTG+TGG + Chr5:97833456-97833475 None:intergenic 45.0%
ATTGCAACGCAAACCATTGC+CGG - Chr5:97833963-97833982 MsG0580029504.01.T01:five_prime_UTR 45.0%
CCAGAATTCGTTTGGCGTAA+TGG + Chr5:97833617-97833636 None:intergenic 45.0%
CCATTACGCCAAACGAATTC+TGG - Chr5:97833614-97833633 MsG0580029504.01.T01:intron 45.0%
CCCGTTGTCTACCAGTATTT+CGG - Chr5:97833531-97833550 MsG0580029504.01.T01:five_prime_UTR 45.0%
CCGAAATACTGGTAGACAAC+GGG + Chr5:97833534-97833553 None:intergenic 45.0%
CGAAATACTGGTAGACAACG+GGG + Chr5:97833533-97833552 None:intergenic 45.0%
GCCGAAATACTGGTAGACAA+CGG + Chr5:97833535-97833554 None:intergenic 45.0%
GCTACCAAACACATGCTTAG+TGG + Chr5:97832744-97832763 None:intergenic 45.0%
GGCTACTGTAGCAGATTTAC+AGG - Chr5:97832131-97832150 MsG0580029504.01.T01:intron 45.0%
GGTCATGATAAAAGCAGCGA+CGG + Chr5:97834003-97834022 None:intergenic 45.0%
TACATGGCATATGTCTGCAC+AGG + Chr5:97833582-97833601 None:intergenic 45.0%
TCCGCAACTGTGCTTATTAC+TGG - Chr5:97833691-97833710 MsG0580029504.01.T01:intron 45.0%
TGAAGGTCACTGTGGTTTCT+AGG - Chr5:97831869-97831888 MsG0580029504.01.T01:CDS 45.0%
TTAAGTGGTGTTCGCCACTT+CGG + Chr5:97833049-97833068 None:intergenic 45.0%
! ACAGGCTTTTCCTTTGATCC+CGG + Chr5:97833351-97833370 None:intergenic 45.0%
! AGTGTGTTGCTGACACTGTT+TGG - Chr5:97831818-97831837 MsG0580029504.01.T01:CDS 45.0%
! CTGACACTGTTTGGTGAAGT+GGG - Chr5:97831827-97831846 MsG0580029504.01.T01:CDS 45.0%
! GGAACTTATGATGGGGTGTT+TGG + Chr5:97832916-97832935 None:intergenic 45.0%
! GTCACTTACAGGGGTGTATA+GGG + Chr5:97833754-97833773 None:intergenic 45.0%
! TCACTTACAGGGGTGTATAG+GGG + Chr5:97833753-97833772 None:intergenic 45.0%
! TTGGTGAAGTGGGTGTGTTT+TGG - Chr5:97831837-97831856 MsG0580029504.01.T01:CDS 45.0%
!! CAGCCAAAAAGCATCCATCA+AGG - Chr5:97833301-97833320 MsG0580029504.01.T01:intron 45.0%
!! CTGCCTTGATGGATGCTTTT+TGG + Chr5:97833307-97833326 None:intergenic 45.0%
!! GGGAAGGATGGATTAATGTG+AGG + Chr5:97831342-97831361 None:intergenic 45.0%
!! TTCGAGCTTTAGGTTATGCC+GGG - Chr5:97832330-97832349 MsG0580029504.01.T01:intron 45.0%
ACGGGGAAGTAGTAGAAGAC+TGG + Chr5:97833516-97833535 None:intergenic 50.0%
ACTGGGCTCTTGCAAAACAC+AGG - Chr5:97834024-97834043 MsG0580029504.01.T01:five_prime_UTR 50.0%
CGCCTTTGTAGCCGAAATAC+TGG + Chr5:97833545-97833564 None:intergenic 50.0%
CTTGACACTTCCTGTCCAAC+CGG - Chr5:97833329-97833348 MsG0580029504.01.T01:intron 50.0%
GCAGCCTGTTCTACTAGTGT+TGG - Chr5:97832458-97832477 MsG0580029504.01.T01:intron 50.0%
GGTGGATATCAAATCCCACG+TGG - Chr5:97833873-97833892 MsG0580029504.01.T01:intron 50.0%
GTTTGTGTGTGTCCGTCTCT+AGG - Chr5:97833227-97833246 MsG0580029504.01.T01:intron 50.0%
TGATATCCACCTTCTCCAGC+AGG + Chr5:97833864-97833883 None:intergenic 50.0%
TGGAAAGGGGAGAAGTTGCA+TGG + Chr5:97833665-97833684 None:intergenic 50.0%
TTGACACTTCCTGTCCAACC+GGG - Chr5:97833330-97833349 MsG0580029504.01.T01:intron 50.0%
! GCTGACACTGTTTGGTGAAG+TGG - Chr5:97831826-97831845 MsG0580029504.01.T01:CDS 50.0%
! GCTTTTCCTTTGATCCCGGT+TGG + Chr5:97833347-97833366 None:intergenic 50.0%
! GGTCACTTACAGGGGTGTAT+AGG + Chr5:97833755-97833774 None:intergenic 50.0%
! GTCACTGTGGTTTCTAGGAG+TGG - Chr5:97831874-97831893 MsG0580029504.01.T01:CDS 50.0%
! GTGTTTTGCAAGAGCCCAGT+TGG + Chr5:97834024-97834043 None:intergenic 50.0%
! TTACAGGGGTGTATAGGGGA+TGG + Chr5:97833749-97833768 None:intergenic 50.0%
!! GTTTTGGTCTGTAGCCGAAG+TGG - Chr5:97833032-97833051 MsG0580029504.01.T01:intron 50.0%
AGGAATCTTCGTGGACCTGC+TGG - Chr5:97833846-97833865 MsG0580029504.01.T01:intron 55.0%
CAATGTTGAAGCCCAGCCAC+TGG + Chr5:97833947-97833966 None:intergenic 55.0%
TCCTGTCCAACCGGGATCAA+AGG - Chr5:97833338-97833357 MsG0580029504.01.T01:intron 55.0%
TCCTTTGATCCCGGTTGGAC+AGG + Chr5:97833342-97833361 None:intergenic 55.0%
TGGCATATGTCTGCACAGGG+TGG + Chr5:97833578-97833597 None:intergenic 55.0%
! AGTGTCAAGCGCTGCCTTGA+TGG + Chr5:97833318-97833337 None:intergenic 55.0%
CTTCGTGGACCTGCTGGAGA+AGG - Chr5:97833852-97833871 MsG0580029504.01.T01:intron 60.0%
CGTGGACCTGCTGGAGAAGG+TGG - Chr5:97833855-97833874 MsG0580029504.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 97831239 97834094 97831239 ID=MsG0580029504.01;Name=MsG0580029504.01
Chr5 mRNA 97831239 97834094 97831239 ID=MsG0580029504.01.T01;Parent=MsG0580029504.01;Name=MsG0580029504.01.T01;_AED=0.49;_eAED=0.50;_QI=312|1|0.75|1|0.66|0.5|4|0|299
Chr5 exon 97831239 97832029 97831239 ID=MsG0580029504.01.T01:exon:25313;Parent=MsG0580029504.01.T01
Chr5 exon 97833162 97833201 97833162 ID=MsG0580029504.01.T01:exon:25312;Parent=MsG0580029504.01.T01
Chr5 exon 97833397 97833562 97833397 ID=MsG0580029504.01.T01:exon:25311;Parent=MsG0580029504.01.T01
Chr5 exon 97833880 97834094 97833880 ID=MsG0580029504.01.T01:exon:25310;Parent=MsG0580029504.01.T01
Chr5 five_prime_UTR 97833880 97834094 97833880 ID=MsG0580029504.01.T01:five_prime_utr;Parent=MsG0580029504.01.T01
Chr5 five_prime_UTR 97833466 97833562 97833466 ID=MsG0580029504.01.T01:five_prime_utr;Parent=MsG0580029504.01.T01
Chr5 CDS 97833397 97833465 97833397 ID=MsG0580029504.01.T01:cds;Parent=MsG0580029504.01.T01
Chr5 CDS 97833162 97833201 97833162 ID=MsG0580029504.01.T01:cds;Parent=MsG0580029504.01.T01
Chr5 CDS 97831239 97832029 97831239 ID=MsG0580029504.01.T01:cds;Parent=MsG0580029504.01.T01
Gene Sequence

>MsG0580029504.01.T01

ATGAAGGTCACTGTGGTTTCTAGGAGTGGAAGAGAGATTGTTAAAGGTGGCATTGAGCTCGATGATTCTGCTACTGTAGCAGATTTACAGGAGGCAATTCACAAGCAAACCAAAAAGCATCCATCAAGGCAGCGCTTGACACTTCCTGTCCAACCGGGATCAAAGGAAAAGCCTGTTGTTCTGAATTACAAAAAGAGTCTCAATGACTATACAAGTGGAAATTCAAAAACCTTAACTGTAACGTTCAAGGACTTAGGTCCACAAGTTTCTTACCGTACGCTTTTCTTCTTTGAGTATTTGGGGCCGTTGCTTCTCTATCCAGTCTTCTACTACTTCCCCGTTGTCTACCAGTATTTCGGCTACAAAGGCGAACGTGTCATCCACCCTGTGCAGACATATGCCATGTACTATTGGTGTTTCCATTACGCCAAACGAATTCTGGAAACATTTTTTGTGCATCGCTTCAGCCATGCAACTTCTCCCCTTTCCAATGTTTTCCGCAACTGTGCTTATTACTGGACATTTGGCTGTTATATTGCTTATTATGTGAACCATCCCCTATACACCCCTGTAAGTGACCTTCAAATGAAGATAGGCTTTGGATTTGGGATACTTTGTCAAGTTTCAAACTTTTATTGCCATATTATACTGAGGAATCTTCGTGGACCTGCTGGAGAAGGTGGATATCAAATCCCACGTGGCTTTCTCTTCAATATCGTTACTTGTGCAAACTATACAACAGAGATTTACCAGTGGCTGGGCTTCAACATTGCAACGCAAACCATTGCCGGTTATATATTTCTTGCCGTCGCTGCTTTTATCATGACCAACTGGGCTCTTGCAAAACACAGGCGCTTGAAGAAGGTCTGTCTCCTTACCTTTTCTTTTGTAGTTCACTAA
Protein sequence

>MsG0580029504.01.T01

MKVTVVSRSGREIVKGGIELDDSATVADLQEAIHKQTKKHPSRQRLTLPVQPGSKEKPVVLNYKKSLNDYTSGNSKTLTVTFKDLGPQVSYRTLFFFEYLGPLLLYPVFYYFPVVYQYFGYKGERVIHPVQTYAMYYWCFHYAKRILETFFVHRFSHATSPLSNVFRNCAYYWTFGCYIAYYVNHPLYTPVSDLQMKIGFGFGILCQVSNFYCHIILRNLRGPAGEGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTIAGYIFLAVAAFIMTNWALAKHRRLKKVCLLTFSFVVH*