AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016899.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016899.01.T01 MTR_3g097350 54.516 310 36 6 181 409 237 522 1.62e-93 292
MsG0380016899.01.T01 MTR_3g097350 90.299 134 8 2 1 134 1 129 4.82e-67 223
MsG0380016899.01.T01 MTR_8g095360 38.235 476 146 15 42 409 17 452 1.04e-78 252
MsG0380016899.01.T01 MTR_4g033435 38.710 310 86 7 181 409 259 545 1.13e-55 193
MsG0380016899.01.T01 MTR_4g033435 69.767 43 13 0 71 113 82 124 8.10e-11 64.3
MsG0380016899.01.T01 MTR_4g013300 32.686 309 107 9 181 409 112 399 6.00e-37 140
MsG0380016899.01.T01 MTR_2g031610 30.293 307 113 8 183 409 134 419 3.98e-34 132
MsG0380016899.01.T01 MTR_7g070480 30.132 302 112 8 186 409 93 373 6.61e-33 129
MsG0380016899.01.T01 MTR_4g033435 44.882 127 37 1 181 274 259 385 8.97e-28 114
MsG0380016899.01.T01 MTR_4g033435 69.767 43 13 0 71 113 82 124 7.70e-11 63.9
MsG0380016899.01.T01 MTR_1g069915 31.621 253 107 8 203 410 192 423 3.09e-26 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016899.01.T01 AT1G72160 35.141 461 191 16 10 409 29 442 2.65e-59 201
MsG0380016899.01.T01 AT4G09160 39.550 311 84 9 181 409 329 617 9.04e-53 187
MsG0380016899.01.T01 AT4G09160 39.550 311 84 9 181 409 304 592 9.49e-53 186
MsG0380016899.01.T01 AT4G09160 39.550 311 84 9 181 409 304 592 1.02e-52 186
MsG0380016899.01.T01 AT1G22530 35.179 307 94 9 181 408 355 635 2.65e-42 158
MsG0380016899.01.T01 AT1G22530 35.179 307 94 9 181 408 321 601 3.64e-42 157
MsG0380016899.01.T01 AT1G72150 34.416 308 95 12 181 408 246 526 2.81e-38 145
MsG0380016899.01.T01 AT3G51670 30.263 304 113 8 184 409 75 357 1.28e-33 130
MsG0380016899.01.T01 AT1G30690 30.351 313 105 13 181 409 207 490 9.46e-29 118
MsG0380016899.01.T01 AT1G30690 30.351 313 105 13 181 409 207 490 9.46e-29 118

Find 101 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCGGGCTCTGGGTTGGGCT+TGG 0.133515 3:-89186061 None:intergenic
CCTGTTTGTTATAACATTTA+TGG 0.191442 3:+89186895 MsG0380016899.01.T01:CDS
ATTATATGCAGATGACTTAT+TGG 0.206380 3:+89188769 MsG0380016899.01.T01:three_prime_UTR
TCCAGTTACTGAGGTGAATT+TGG 0.216476 3:+89187759 MsG0380016899.01.T01:CDS
CTAAGCAAAGATGGTGAATT+TGG 0.229951 3:+89187676 MsG0380016899.01.T01:CDS
TCTTGAGTTGTGGCTATCTT+TGG 0.230004 3:-89185952 None:intergenic
CTTTGCAACAACTACAAAAT+TGG 0.236225 3:+89188526 MsG0380016899.01.T01:three_prime_UTR
CTCTGCTTCTGGTGTGGGCT+CGG 0.245291 3:-89186319 None:intergenic
TCGGGCTCTGGGTTGGGCTT+GGG 0.258053 3:-89186060 None:intergenic
TTGTGATTCTGCTCTGCTTC+TGG 0.271526 3:-89186330 None:intergenic
AAAAGCAAGTTTGTATTTGC+TGG 0.273729 3:+89187483 MsG0380016899.01.T01:CDS
ACCAAATTCACCTCAGTAAC+TGG 0.284996 3:-89187760 None:intergenic
GTTCTTGAAATGGAGAATTC+TGG 0.287184 3:+89186978 MsG0380016899.01.T01:CDS
GTTCTGTTCATCTTTCTTGT+TGG 0.294746 3:-89186369 None:intergenic
TCATGGGAGCTAAGAGTAAT+TGG 0.301501 3:+89188403 MsG0380016899.01.T01:CDS
AGTGCTTTCTTCTCAGCTTC+AGG 0.302927 3:-89186201 None:intergenic
TGGTCTTGGAGAAGAGTATT+AGG 0.324429 3:+89186998 MsG0380016899.01.T01:CDS
CCCCATATTGAAACCTCTTC+TGG 0.324729 3:-89186661 None:intergenic
AGAGAGAAAAGTTCTTGAAA+TGG 0.327651 3:+89186968 MsG0380016899.01.T01:CDS
ACAAGCATATAGATCAAATT+AGG 0.328233 3:-89188834 None:intergenic
TCCACCACCTTTGGTTCCTC+TGG 0.337500 3:-89186607 None:intergenic
CCATAAATGTTATAACAAAC+AGG 0.338368 3:-89186895 None:intergenic
TAGAAGAGTCTCAGCTGATT+TGG 0.338628 3:-89187510 None:intergenic
TTCTGCTCTGCTTCTGGTGT+GGG 0.366572 3:-89186324 None:intergenic
TTCTTGTTGGTCTCTTCAGC+AGG 0.368545 3:-89186356 None:intergenic
GAGCAACTTTCAGTCAAATA+TGG 0.373495 3:+89187649 MsG0380016899.01.T01:CDS
GGAGAAGAGTATTAGGAAGT+TGG 0.378620 3:+89187005 MsG0380016899.01.T01:CDS
GAAGAAGCTTCCACCACCTT+TGG 0.382704 3:-89186616 None:intergenic
AACCAGAAGAGGTTTCAATA+TGG 0.384526 3:+89186659 MsG0380016899.01.T01:CDS
CTTTCTTAATCTGAAGTTGA+AGG 0.385634 3:-89188628 None:intergenic
AATCAGCTGAGACTCTTCTA+AGG 0.396379 3:+89187513 MsG0380016899.01.T01:CDS
AACTACAAAATTGGTGAACC+TGG 0.412559 3:+89188535 MsG0380016899.01.T01:three_prime_UTR
CTTAGAGCTTGAATTGTCAA+TGG 0.418583 3:-89188572 None:intergenic
TTTGTTCTTTGTGTAAGAAA+AGG 0.424626 3:-89187462 None:intergenic
ACTTGCTCCTCCTCAGCAAC+AGG 0.426842 3:-89185982 None:intergenic
TTAATCTGAAGTTGAAGGCT+TGG 0.430689 3:-89188623 None:intergenic
TCTGTGTCCCAATAGTAAAA+AGG 0.437051 3:+89188906 MsG0380016899.01.T01:three_prime_UTR
GAGAAAACTGTTTACATGCA+TGG 0.439519 3:+89186853 MsG0380016899.01.T01:CDS
ACTGGGCTTGGAGTAGTTGA+AGG 0.447024 3:-89186282 None:intergenic
TCTGCTTCTGGTGTGGGCTC+GGG 0.449314 3:-89186318 None:intergenic
TTCTTTGTCAGCTGGAACAG+TGG 0.452483 3:-89186028 None:intergenic
TCCAGAGTCTGGTTCGTTCA+AGG 0.461611 3:+89186152 MsG0380016899.01.T01:CDS
ACCAGAAGAGGTTTCAATAT+GGG 0.467828 3:+89186660 MsG0380016899.01.T01:CDS
GAAATGGAGAATTCTGGTCT+TGG 0.470951 3:+89186984 MsG0380016899.01.T01:CDS
GTGTAGCTTCCTTCTGAACT+TGG 0.478836 3:-89188456 None:intergenic
TTGTAGTTGTTGCAAAGCAC+TGG 0.484047 3:-89188520 None:intergenic
GGCAGTGCCTGTTGCTGAGG+AGG 0.486650 3:+89185975 MsG0380016899.01.T01:CDS
TCATCAGATTCTTTGTCAGC+TGG 0.490379 3:-89186036 None:intergenic
AAGGAAGAGAGCACTATTGT+TGG 0.493837 3:+89186171 MsG0380016899.01.T01:CDS
TGCAGAACTGTCTACTCTCA+TGG 0.494143 3:+89188386 MsG0380016899.01.T01:intron
AGATGAACAGAACAATGAAC+AGG 0.499148 3:+89186379 MsG0380016899.01.T01:CDS
ATTCTGCTCTGCTTCTGGTG+TGG 0.510922 3:-89186325 None:intergenic
TATTTGACTGAAAGTTGCTC+AGG 0.515624 3:-89187646 None:intergenic
ATCAAAATCAACTATGGCTG+AGG 0.520145 3:+89185924 None:intergenic
TATGGTGGACTAAGCAAAGA+TGG 0.520271 3:+89187667 MsG0380016899.01.T01:CDS
TCCTTGAACGAACCAGACTC+TGG 0.528848 3:-89186153 None:intergenic
TTGTTGGTCTCTTCAGCAGG+TGG 0.536894 3:-89186353 None:intergenic
TCCAGAGGAACCAAAGGTGG+TGG 0.538723 3:+89186606 MsG0380016899.01.T01:CDS
ATGGTGAGAACAACTTTCCC+AGG 0.541945 3:-89188553 None:intergenic
CCAGAAGAGGTTTCAATATG+GGG 0.547282 3:+89186661 MsG0380016899.01.T01:CDS
GTTCTATCGTCTGCAAGAAG+TGG 0.553486 3:-89186687 None:intergenic
GAGTTTGTACCAAGTTCAGA+AGG 0.553555 3:+89188447 MsG0380016899.01.T01:CDS
ACAACAACAACAACCAGAAG+AGG 0.568417 3:+89186648 MsG0380016899.01.T01:CDS
AATCCTGACAAAACACAGAA+AGG 0.573712 3:-89187797 None:intergenic
TTATGGAGAGTTTGATAACA+AGG 0.578141 3:+89186912 MsG0380016899.01.T01:CDS
ATGCATGGATATGACAAAGA+AGG 0.578689 3:+89186868 MsG0380016899.01.T01:CDS
AGAGGCAGTGCCTGTTGCTG+AGG 0.578794 3:+89185972 MsG0380016899.01.T01:CDS
CTCAGTAACTGGAAATTCCA+CGG 0.580825 3:-89187749 None:intergenic
TAATCGTTATGATCTTGTGT+TGG 0.590693 3:+89188660 MsG0380016899.01.T01:three_prime_UTR
AAAGATAGCCACAACTCAAG+AGG 0.593760 3:+89185954 MsG0380016899.01.T01:CDS
GGTGGTGGAAGCTTCTTCAC+CGG 0.595988 3:+89186621 MsG0380016899.01.T01:CDS
ACTGGGCTTTGATACCTCCT+CGG 0.596592 3:-89186115 None:intergenic
AGGCACTGCCTCTTGAGTTG+TGG 0.597680 3:-89185962 None:intergenic
ACTACAAAATTGGTGAACCT+GGG 0.600044 3:+89188536 MsG0380016899.01.T01:three_prime_UTR
AATTGGTGGGACATAAGCTA+TGG 0.601141 3:+89188420 MsG0380016899.01.T01:CDS
GCAGAACTGTCTACTCTCAT+GGG 0.603658 3:+89188387 MsG0380016899.01.T01:intron
TGGGAGCTAAGAGTAATTGG+TGG 0.603908 3:+89188406 MsG0380016899.01.T01:CDS
TGTTGCTGAGGAGGAGCAAG+TGG 0.604048 3:+89185984 MsG0380016899.01.T01:CDS
CAACTTTCAGTCAAATATGG+TGG 0.612687 3:+89187652 MsG0380016899.01.T01:CDS
ATCAGTTCCAGAGGAACCAA+AGG 0.614270 3:+89186600 MsG0380016899.01.T01:intron
AAACAACACTGCTGAGACCG+AGG 0.619853 3:+89186098 MsG0380016899.01.T01:CDS
AGTTCCAGAGGAACCAAAGG+TGG 0.628144 3:+89186603 MsG0380016899.01.T01:intron
GGGAGCTAAGAGTAATTGGT+GGG 0.628905 3:+89188407 MsG0380016899.01.T01:CDS
CATAAATGTTATAACAAACA+GGG 0.628980 3:-89186894 None:intergenic
TTGAAGGCTTGGTCTTCAAG+CGG 0.637531 3:-89188612 None:intergenic
AGGTGTTTATCAATGTGCCA+TGG 0.641137 3:+89187409 MsG0380016899.01.T01:intron
TGGAGAGTTTGATAACAAGG+AGG 0.651054 3:+89186915 MsG0380016899.01.T01:CDS
TGTAGCTTCATCAGTTCCAG+AGG 0.651074 3:+89186591 MsG0380016899.01.T01:intron
CGTGGAATTTCCAGTTACTG+AGG 0.660408 3:+89187750 MsG0380016899.01.T01:CDS
CAGAAGAGGTTTCAATATGG+GGG 0.661550 3:+89186662 MsG0380016899.01.T01:CDS
AGAAATTACAGTGAGGCCTG+CGG 0.663813 3:+89187717 MsG0380016899.01.T01:CDS
TGCTGAGGAGGAGCAAGTGG+TGG 0.671033 3:+89185987 MsG0380016899.01.T01:CDS
AATAGTGCAAATACCACCAG+GGG 0.702016 3:-89187034 None:intergenic
CAATAGTGCAAATACCACCA+GGG 0.705753 3:-89187035 None:intergenic
TGTTTATCAATGTGCCATGG+TGG 0.706720 3:+89187412 MsG0380016899.01.T01:CDS
GGGCTTGGAGTAGTTGAAGG+TGG 0.709064 3:-89186279 None:intergenic
TTCACAGCTAAGTACCACCA+TGG 0.716803 3:-89187426 None:intergenic
GCCTGCGGCAAAACACACCG+TGG 0.718457 3:+89187732 MsG0380016899.01.T01:CDS
CAACACTGCTGAGACCGAGG+AGG 0.737926 3:+89186101 MsG0380016899.01.T01:CDS
CTGTTACAGAAATTACAGTG+AGG 0.780489 3:+89187710 MsG0380016899.01.T01:CDS
GAGGAGGTATCAAAGCCCAG+TGG 0.800821 3:+89186117 MsG0380016899.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAGTATTATCTATTT+CGG - Chr3:89188316-89188335 None:intergenic 10.0%
!!! TAAATTTCTTTTGTAAATTT+TGG + Chr3:89188806-89188825 MsG0380016899.01.T01:three_prime_UTR 10.0%
!!! ATGTTTCTTTGATATTTTAA+AGG + Chr3:89188280-89188299 MsG0380016899.01.T01:intron 15.0%
!!! TGTTTCTTTGATATTTTAAA+GGG + Chr3:89188281-89188300 MsG0380016899.01.T01:intron 15.0%
!!! TTTATTTGATTTTGTTTTGT+AGG + Chr3:89187389-89187408 MsG0380016899.01.T01:intron 15.0%
!! AAATTTAAGAACAACAATTG+TGG - Chr3:89187299-89187318 None:intergenic 20.0%
!! AAGGAATCATAAAATAAACA+TGG + Chr3:89188001-89188020 MsG0380016899.01.T01:intron 20.0%
!! ACAAATTGTTGCATAAAATA+AGG - Chr3:89187938-89187957 None:intergenic 20.0%
!! CAAAATTGAAGAGTTATTAT+TGG + Chr3:89186805-89186824 MsG0380016899.01.T01:intron 20.0%
!! CATAAATGTTATAACAAACA+GGG - Chr3:89186897-89186916 None:intergenic 20.0%
!!! ATGACACATTAATTTTTTGA+GGG + Chr3:89188132-89188151 MsG0380016899.01.T01:intron 20.0%
!!! ATTTCTTTTGTAAATTTTGG+TGG + Chr3:89188809-89188828 MsG0380016899.01.T01:three_prime_UTR 20.0%
!!! ATTTTGGTTATTACTATTGA+GGG + Chr3:89188717-89188736 MsG0380016899.01.T01:three_prime_UTR 20.0%
!!! TAGTGTCTTAATTTGTTTTA+TGG + Chr3:89187604-89187623 MsG0380016899.01.T01:intron 20.0%
!!! TATTTTGGTTATTACTATTG+AGG + Chr3:89188716-89188735 MsG0380016899.01.T01:three_prime_UTR 20.0%
!!! TTCTTTTTGCTGTATTATTT+TGG + Chr3:89188701-89188720 MsG0380016899.01.T01:three_prime_UTR 20.0%
!!! TTTCTTTTGTAAATTTTGGT+GGG + Chr3:89188810-89188829 MsG0380016899.01.T01:three_prime_UTR 20.0%
! AATATAAATATGAAGACCAG+AGG - Chr3:89187889-89187908 None:intergenic 25.0%
! AATTAAGACACTAACAAACT+AGG - Chr3:89187597-89187616 None:intergenic 25.0%
! AATTATCTTGAAGCAATTGA+AGG - Chr3:89187129-89187148 None:intergenic 25.0%
! ACAAGCATATAGATCAAATT+AGG - Chr3:89188837-89188856 None:intergenic 25.0%
! ATAAGGTAAACAAACAAAAG+AGG - Chr3:89187921-89187940 None:intergenic 25.0%
! ATTATATGCAGATGACTTAT+TGG + Chr3:89188769-89188788 MsG0380016899.01.T01:three_prime_UTR 25.0%
! ATTATCTTGAAGCAATTGAA+GGG - Chr3:89187128-89187147 None:intergenic 25.0%
! CCATAAATGTTATAACAAAC+AGG - Chr3:89186898-89186917 None:intergenic 25.0%
! CTCAAAAAATTAATGTGTCA+TGG - Chr3:89188133-89188152 None:intergenic 25.0%
! GCAATTAATATAACTGAAAC+TGG - Chr3:89187207-89187226 None:intergenic 25.0%
! GTTATTATTGGATGAAACTT+AGG + Chr3:89186817-89186836 MsG0380016899.01.T01:intron 25.0%
! TAAACAAACAAAAGAGGAAA+AGG - Chr3:89187915-89187934 None:intergenic 25.0%
! TTTGTTCTTTGTGTAAGAAA+AGG - Chr3:89187465-89187484 None:intergenic 25.0%
!! CGTTTTTCCTTTTTACTATT+GGG - Chr3:89188916-89188935 None:intergenic 25.0%
!! TTTTTAGATTGAGTATCCAA+GGG + Chr3:89187827-89187846 MsG0380016899.01.T01:intron 25.0%
!!! ATGCATTGAAATTTTGTTGT+TGG + Chr3:89188355-89188374 MsG0380016899.01.T01:intron 25.0%
!!! CATGACACATTAATTTTTTG+AGG + Chr3:89188131-89188150 MsG0380016899.01.T01:intron 25.0%
!!! CCTGTTTGTTATAACATTTA+TGG + Chr3:89186895-89186914 MsG0380016899.01.T01:CDS 25.0%
!!! TCGTTTTTCCTTTTTACTAT+TGG - Chr3:89188917-89188936 None:intergenic 25.0%
!!! TGCATTGAAATTTTGTTGTT+GGG + Chr3:89188356-89188375 MsG0380016899.01.T01:intron 25.0%
!!! TTAATTTTTTGAGGGTTCAA+AGG + Chr3:89188140-89188159 MsG0380016899.01.T01:intron 25.0%
!!! TTCTTTTGTAAATTTTGGTG+GGG + Chr3:89188811-89188830 MsG0380016899.01.T01:three_prime_UTR 25.0%
!!! TTTTGGTTATTACTATTGAG+GGG + Chr3:89188718-89188737 MsG0380016899.01.T01:three_prime_UTR 25.0%
!!! TTTTTTAGATTGAGTATCCA+AGG + Chr3:89187826-89187845 MsG0380016899.01.T01:intron 25.0%
AAAAGCAAGTTTGTATTTGC+TGG + Chr3:89187483-89187502 MsG0380016899.01.T01:CDS 30.0%
AATGATCTTAAGAATTCTCC+TGG + Chr3:89187066-89187085 MsG0380016899.01.T01:intron 30.0%
AGAGAGAAAAGTTCTTGAAA+TGG + Chr3:89186968-89186987 MsG0380016899.01.T01:CDS 30.0%
AGATACTAGATGCTTTATCA+AGG + Chr3:89187982-89188001 MsG0380016899.01.T01:intron 30.0%
CTTTGCAACAACTACAAAAT+TGG + Chr3:89188526-89188545 MsG0380016899.01.T01:three_prime_UTR 30.0%
TAATCGTTATGATCTTGTGT+TGG + Chr3:89188660-89188679 MsG0380016899.01.T01:three_prime_UTR 30.0%
! ATTTTGAACTCTTTTCTCCA+CGG - Chr3:89186791-89186810 None:intergenic 30.0%
! CTTTCTTAATCTGAAGTTGA+AGG - Chr3:89188631-89188650 None:intergenic 30.0%
! GTAAAGTATTAGTACCTGTT+TGG - Chr3:89187167-89187186 None:intergenic 30.0%
! GTCTATGATTTTGCTAAACT+TGG - Chr3:89188209-89188228 None:intergenic 30.0%
! TTATGGAGAGTTTGATAACA+AGG + Chr3:89186912-89186931 MsG0380016899.01.T01:CDS 30.0%
! TTTCTTTTCTGCTTCTTCTT+TGG - Chr3:89186494-89186513 None:intergenic 30.0%
!! ATGGTCATTTTGTTAAGTCA+TGG - Chr3:89188114-89188133 None:intergenic 30.0%
!! TGAAGCAATTTTTCTAGTCT+TGG - Chr3:89188491-89188510 None:intergenic 30.0%
AACCAGAAGAGGTTTCAATA+TGG + Chr3:89186659-89186678 MsG0380016899.01.T01:CDS 35.0%
AACTACAAAATTGGTGAACC+TGG + Chr3:89188535-89188554 MsG0380016899.01.T01:three_prime_UTR 35.0%
AATCCTGACAAAACACAGAA+AGG - Chr3:89187800-89187819 None:intergenic 35.0%
ACCAGAAGAGGTTTCAATAT+GGG + Chr3:89186660-89186679 MsG0380016899.01.T01:CDS 35.0%
ACTACAAAATTGGTGAACCT+GGG + Chr3:89188536-89188555 MsG0380016899.01.T01:three_prime_UTR 35.0%
AGATGAACAGAACAATGAAC+AGG + Chr3:89186379-89186398 MsG0380016899.01.T01:CDS 35.0%
AGCAGAAAAGAAAGAAACAG+AGG + Chr3:89186501-89186520 MsG0380016899.01.T01:intron 35.0%
ATCTAGTATCTCTCAAGTCA+GGG - Chr3:89187973-89187992 None:intergenic 35.0%
ATGCATGGATATGACAAAGA+AGG + Chr3:89186868-89186887 MsG0380016899.01.T01:CDS 35.0%
CAACTTTCAGTCAAATATGG+TGG + Chr3:89187652-89187671 MsG0380016899.01.T01:CDS 35.0%
CTAAGCAAAGATGGTGAATT+TGG + Chr3:89187676-89187695 MsG0380016899.01.T01:CDS 35.0%
CTGATACCACTAAATAGATG+CGG + Chr3:89187273-89187292 MsG0380016899.01.T01:intron 35.0%
CTGTTACAGAAATTACAGTG+AGG + Chr3:89187710-89187729 MsG0380016899.01.T01:CDS 35.0%
CTTAGAGCTTGAATTGTCAA+TGG - Chr3:89188575-89188594 None:intergenic 35.0%
GAGAAAACTGTTTACATGCA+TGG + Chr3:89186853-89186872 MsG0380016899.01.T01:CDS 35.0%
GAGCAACTTTCAGTCAAATA+TGG + Chr3:89187649-89187668 MsG0380016899.01.T01:CDS 35.0%
GATGAAAAAATTCCAGAGTC+TGG + Chr3:89186141-89186160 MsG0380016899.01.T01:CDS 35.0%
GGAAACAGACATACTTCAAT+TGG + Chr3:89188022-89188041 MsG0380016899.01.T01:intron 35.0%
GTTCTGTTCATCTTTCTTGT+TGG - Chr3:89186372-89186391 None:intergenic 35.0%
GTTCTTGAAATGGAGAATTC+TGG + Chr3:89186978-89186997 MsG0380016899.01.T01:CDS 35.0%
TATTTGACTGAAAGTTGCTC+AGG - Chr3:89187649-89187668 None:intergenic 35.0%
TCTGTGTCCCAATAGTAAAA+AGG + Chr3:89188906-89188925 MsG0380016899.01.T01:three_prime_UTR 35.0%
TGGATTGTGTAATCTTTCCT+AGG + Chr3:89187860-89187879 MsG0380016899.01.T01:intron 35.0%
! TGGCATTGTCATTGTGATTT+TGG - Chr3:89188176-89188195 None:intergenic 35.0%
! TGTGTTTTGTCAGGATTGAT+TGG + Chr3:89187803-89187822 MsG0380016899.01.T01:CDS 35.0%
! TTAATCTGAAGTTGAAGGCT+TGG - Chr3:89188626-89188645 None:intergenic 35.0%
! TTACCTTTCTGTGTTTTGTC+AGG + Chr3:89187794-89187813 MsG0380016899.01.T01:CDS 35.0%
! TTTTGTTCTTTAACTGGGCT+TGG - Chr3:89186297-89186316 None:intergenic 35.0%
!! TTCTTTCACTTTGAAGTCTC+TGG - Chr3:89186742-89186761 None:intergenic 35.0%
!!! GGAATTTTTTCATCACCACT+GGG - Chr3:89186135-89186154 None:intergenic 35.0%
!!! TGGAATTTTTTCATCACCAC+TGG - Chr3:89186136-89186155 None:intergenic 35.0%
AAAGATAGCCACAACTCAAG+AGG + Chr3:89185954-89185973 MsG0380016899.01.T01:CDS 40.0%
AATAGTGCAAATACCACCAG+GGG - Chr3:89187037-89187056 None:intergenic 40.0%
AATCAGCTGAGACTCTTCTA+AGG + Chr3:89187513-89187532 MsG0380016899.01.T01:CDS 40.0%
AATCTTTCCTAGGATTCCTC+TGG + Chr3:89187870-89187889 MsG0380016899.01.T01:intron 40.0%
AATGACAATGCCACGTGATT+TGG + Chr3:89188183-89188202 MsG0380016899.01.T01:intron 40.0%
AATTGGTGGGACATAAGCTA+TGG + Chr3:89188420-89188439 MsG0380016899.01.T01:CDS 40.0%
ACAACAACAACAACCAGAAG+AGG + Chr3:89186648-89186667 MsG0380016899.01.T01:CDS 40.0%
ACAATAGTGCAAATACCACC+AGG - Chr3:89187039-89187058 None:intergenic 40.0%
ACCAAATTCACCTCAGTAAC+TGG - Chr3:89187763-89187782 None:intergenic 40.0%
ACCTGTTTGGCTACAAATTC+AGG - Chr3:89187154-89187173 None:intergenic 40.0%
AGGTGTTTATCAATGTGCCA+TGG + Chr3:89187409-89187428 MsG0380016899.01.T01:intron 40.0%
ATGATCAAGAACACTATCCG+TGG + Chr3:89186771-89186790 MsG0380016899.01.T01:intron 40.0%
CAATAGTGCAAATACCACCA+GGG - Chr3:89187038-89187057 None:intergenic 40.0%
CAGAAGAGGTTTCAATATGG+GGG + Chr3:89186662-89186681 MsG0380016899.01.T01:CDS 40.0%
CATCTAGTATCTCTCAAGTC+AGG - Chr3:89187974-89187993 None:intergenic 40.0%
CCAGAAGAGGTTTCAATATG+GGG + Chr3:89186661-89186680 MsG0380016899.01.T01:CDS 40.0%
CGCATCTATTTAGTGGTATC+AGG - Chr3:89187275-89187294 None:intergenic 40.0%
CTCAGTAACTGGAAATTCCA+CGG - Chr3:89187752-89187771 None:intergenic 40.0%
GAAATGGAGAATTCTGGTCT+TGG + Chr3:89186984-89187003 MsG0380016899.01.T01:CDS 40.0%
GAGTTTGTACCAAGTTCAGA+AGG + Chr3:89188447-89188466 MsG0380016899.01.T01:CDS 40.0%
GCTTCTTCTGTAGATGAAGA+TGG + Chr3:89186529-89186548 MsG0380016899.01.T01:intron 40.0%
TAGAAGAGTCTCAGCTGATT+TGG - Chr3:89187513-89187532 None:intergenic 40.0%
TCATCAGATTCTTTGTCAGC+TGG - Chr3:89186039-89186058 None:intergenic 40.0%
TCATGGGAGCTAAGAGTAAT+TGG + Chr3:89188403-89188422 MsG0380016899.01.T01:CDS 40.0%
TCCAGTTACTGAGGTGAATT+TGG + Chr3:89187759-89187778 MsG0380016899.01.T01:CDS 40.0%
TCCTGAATTTGTAGCCAAAC+AGG + Chr3:89187150-89187169 MsG0380016899.01.T01:intron 40.0%
TGTTTATCAATGTGCCATGG+TGG + Chr3:89187412-89187431 MsG0380016899.01.T01:CDS 40.0%
TTGTAGTTGTTGCAAAGCAC+TGG - Chr3:89188523-89188542 None:intergenic 40.0%
! AAGCAATTGAAGGGCTTGTT+TGG - Chr3:89187119-89187138 None:intergenic 40.0%
! CGGGCTTTTGTTCTTTAACT+GGG - Chr3:89186302-89186321 None:intergenic 40.0%
! GGTTGTTGTTGTTGTTGTTC+CGG - Chr3:89186643-89186662 None:intergenic 40.0%
! TCAGCTTCAGTTGTTGTTGT+TGG - Chr3:89186464-89186483 None:intergenic 40.0%
! TCAGTTGTTGTTGTTGGTAG+TGG - Chr3:89186458-89186477 None:intergenic 40.0%
! TCGGGCTTTTGTTCTTTAAC+TGG - Chr3:89186303-89186322 None:intergenic 40.0%
! TCTTGAGTTGTGGCTATCTT+TGG - Chr3:89185955-89185974 None:intergenic 40.0%
! TGGAGAGTTTGATAACAAGG+AGG + Chr3:89186915-89186934 MsG0380016899.01.T01:CDS 40.0%
!! AAGGAAGAGAGCACTATTGT+TGG + Chr3:89186171-89186190 MsG0380016899.01.T01:CDS 40.0%
!! CTGAGACTCTTCTAAGGTAA+AGG + Chr3:89187519-89187538 MsG0380016899.01.T01:intron 40.0%
!! GGAGAAGAGTATTAGGAAGT+TGG + Chr3:89187005-89187024 MsG0380016899.01.T01:CDS 40.0%
!! GTTTTCAACGGGCTTTTTCT+CGG - Chr3:89186082-89186101 None:intergenic 40.0%
!! TATGGTGGACTAAGCAAAGA+TGG + Chr3:89187667-89187686 MsG0380016899.01.T01:CDS 40.0%
!! TGGTCTTGGAGAAGAGTATT+AGG + Chr3:89186998-89187017 MsG0380016899.01.T01:CDS 40.0%
!! TTTTCAACGGGCTTTTTCTC+GGG - Chr3:89186081-89186100 None:intergenic 40.0%
!!! CTCAGCAGTGTTGTTTTCAA+CGG - Chr3:89186094-89186113 None:intergenic 40.0%
!!! TCAGCAGTGTTGTTTTCAAC+GGG - Chr3:89186093-89186112 None:intergenic 40.0%
AATCCAATGCAACGTTCCCT+TGG - Chr3:89187846-89187865 None:intergenic 45.0%
AGAAATTACAGTGAGGCCTG+CGG + Chr3:89187717-89187736 MsG0380016899.01.T01:CDS 45.0%
AGTGCTTTCTTCTCAGCTTC+AGG - Chr3:89186204-89186223 None:intergenic 45.0%
ATCAGTTCCAGAGGAACCAA+AGG + Chr3:89186600-89186619 MsG0380016899.01.T01:intron 45.0%
ATGAAGACCAGAGGAATCCT+AGG - Chr3:89187880-89187899 None:intergenic 45.0%
ATGGTGAGAACAACTTTCCC+AGG - Chr3:89188556-89188575 None:intergenic 45.0%
ATTCTCCTGGACCTACCAAA+TGG + Chr3:89187079-89187098 MsG0380016899.01.T01:intron 45.0%
CCCCATATTGAAACCTCTTC+TGG - Chr3:89186664-89186683 None:intergenic 45.0%
CGTGGAATTTCCAGTTACTG+AGG + Chr3:89187750-89187769 MsG0380016899.01.T01:CDS 45.0%
CTAAACTTGGCCAAATCACG+TGG - Chr3:89188196-89188215 None:intergenic 45.0%
CTTGTCTAAGCCCATTTGGT+AGG - Chr3:89187093-89187112 None:intergenic 45.0%
GCAGAACTGTCTACTCTCAT+GGG + Chr3:89188387-89188406 MsG0380016899.01.T01:intron 45.0%
GGGAGCTAAGAGTAATTGGT+GGG + Chr3:89188407-89188426 MsG0380016899.01.T01:CDS 45.0%
GTGTAGCTTCCTTCTGAACT+TGG - Chr3:89188459-89188478 None:intergenic 45.0%
GTTCTATCGTCTGCAAGAAG+TGG - Chr3:89186690-89186709 None:intergenic 45.0%
TATCCAAGGGAACGTTGCAT+TGG + Chr3:89187840-89187859 MsG0380016899.01.T01:intron 45.0%
TATCTCTCAAGTCAGGGCAT+AGG - Chr3:89187967-89187986 None:intergenic 45.0%
TGCAGAACTGTCTACTCTCA+TGG + Chr3:89188386-89188405 MsG0380016899.01.T01:intron 45.0%
TGGGAGCTAAGAGTAATTGG+TGG + Chr3:89188406-89188425 MsG0380016899.01.T01:CDS 45.0%
TGTAGCTTCATCAGTTCCAG+AGG + Chr3:89186591-89186610 MsG0380016899.01.T01:intron 45.0%
TTCACAGCTAAGTACCACCA+TGG - Chr3:89187429-89187448 None:intergenic 45.0%
TTCTCCTGGACCTACCAAAT+GGG + Chr3:89187080-89187099 MsG0380016899.01.T01:intron 45.0%
TTCTTTGTCAGCTGGAACAG+TGG - Chr3:89186031-89186050 None:intergenic 45.0%
TTGTGATTCTGCTCTGCTTC+TGG - Chr3:89186333-89186352 None:intergenic 45.0%
TTGTGGCCGCATCTATTTAG+TGG - Chr3:89187282-89187301 None:intergenic 45.0%
! AAGTTGGATTTTACCCCTGG+TGG + Chr3:89187021-89187040 MsG0380016899.01.T01:CDS 45.0%
! AGGAAGTTGGATTTTACCCC+TGG + Chr3:89187018-89187037 MsG0380016899.01.T01:CDS 45.0%
! GTAGCTTGTCTAAGCCCATT+TGG - Chr3:89187097-89187116 None:intergenic 45.0%
! TTCTTGTTGGTCTCTTCAGC+AGG - Chr3:89186359-89186378 None:intergenic 45.0%
! TTGAAGGCTTGGTCTTCAAG+CGG - Chr3:89188615-89188634 None:intergenic 45.0%
!! GTTGTTGTTGTTGGTAGTGG+TGG - Chr3:89186455-89186474 None:intergenic 45.0%
AAACAACACTGCTGAGACCG+AGG + Chr3:89186098-89186117 MsG0380016899.01.T01:CDS 50.0%
ACTGGGCTTGGAGTAGTTGA+AGG - Chr3:89186285-89186304 None:intergenic 50.0%
AGTTCCAGAGGAACCAAAGG+TGG + Chr3:89186603-89186622 MsG0380016899.01.T01:intron 50.0%
ATTCTGCTCTGCTTCTGGTG+TGG - Chr3:89186328-89186347 None:intergenic 50.0%
GAAGAAGCTTCCACCACCTT+TGG - Chr3:89186619-89186638 None:intergenic 50.0%
TAAGCCCATTTGGTAGGTCC+AGG - Chr3:89187087-89187106 None:intergenic 50.0%
TCCTTGAACGAACCAGACTC+TGG - Chr3:89186156-89186175 None:intergenic 50.0%
TTCTGCTCTGCTTCTGGTGT+GGG - Chr3:89186327-89186346 None:intergenic 50.0%
! ACTGGGCTTTGATACCTCCT+CGG - Chr3:89186118-89186137 None:intergenic 50.0%
! TCCAGAGTCTGGTTCGTTCA+AGG + Chr3:89186152-89186171 MsG0380016899.01.T01:CDS 50.0%
! TTGTTGGTCTCTTCAGCAGG+TGG - Chr3:89186356-89186375 None:intergenic 50.0%
!!! TTTTTCTCGGGCTCTGGGTT+GGG - Chr3:89186069-89186088 None:intergenic 50.0%
ACTTGCTCCTCCTCAGCAAC+AGG - Chr3:89185985-89186004 None:intergenic 55.0%
GGGCTTGGAGTAGTTGAAGG+TGG - Chr3:89186282-89186301 None:intergenic 55.0%
TCCAGAGGAACCAAAGGTGG+TGG + Chr3:89186606-89186625 MsG0380016899.01.T01:CDS 55.0%
TGTTGCTGAGGAGGAGCAAG+TGG + Chr3:89185984-89186003 MsG0380016899.01.T01:CDS 55.0%
! AGGCACTGCCTCTTGAGTTG+TGG - Chr3:89185965-89185984 None:intergenic 55.0%
! TCCACCACCTTTGGTTCCTC+TGG - Chr3:89186610-89186629 None:intergenic 55.0%
!! GAGGAGGTATCAAAGCCCAG+TGG + Chr3:89186117-89186136 MsG0380016899.01.T01:CDS 55.0%
!! GGTGGTGGAAGCTTCTTCAC+CGG + Chr3:89186621-89186640 MsG0380016899.01.T01:CDS 55.0%
!!! CTTTTTCTCGGGCTCTGGGT+TGG - Chr3:89186070-89186089 None:intergenic 55.0%
AGAGGCAGTGCCTGTTGCTG+AGG + Chr3:89185972-89185991 MsG0380016899.01.T01:CDS 60.0%
CAACACTGCTGAGACCGAGG+AGG + Chr3:89186101-89186120 MsG0380016899.01.T01:CDS 60.0%
CTCTGCTTCTGGTGTGGGCT+CGG - Chr3:89186322-89186341 None:intergenic 60.0%
TCTGCTTCTGGTGTGGGCTC+GGG - Chr3:89186321-89186340 None:intergenic 60.0%
TGCTGAGGAGGAGCAAGTGG+TGG + Chr3:89185987-89186006 MsG0380016899.01.T01:CDS 60.0%
! TCCACGGTGTGTTTTGCCGC+AGG - Chr3:89187736-89187755 None:intergenic 60.0%
!! ACGGGCTTTTTCTCGGGCTC+TGG - Chr3:89186075-89186094 None:intergenic 60.0%
!! CGGGCTTTTTCTCGGGCTCT+GGG - Chr3:89186074-89186093 None:intergenic 60.0%
GCCTGCGGCAAAACACACCG+TGG + Chr3:89187732-89187751 MsG0380016899.01.T01:CDS 65.0%
GGCAGTGCCTGTTGCTGAGG+AGG + Chr3:89185975-89185994 MsG0380016899.01.T01:CDS 65.0%
!! TCGGGCTCTGGGTTGGGCTT+GGG - Chr3:89186063-89186082 None:intergenic 65.0%
!! CTCGGGCTCTGGGTTGGGCT+TGG - Chr3:89186064-89186083 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 89185937 89188943 89185937 ID=MsG0380016899.01;Name=MsG0380016899.01
Chr3 mRNA 89185937 89188943 89185937 ID=MsG0380016899.01.T01;Parent=MsG0380016899.01;Name=MsG0380016899.01.T01;_AED=0.47;_eAED=0.50;_QI=0|0.2|0.33|1|0.8|0.66|6|446|410
Chr3 exon 89185937 89186400 89185937 ID=MsG0380016899.01.T01:exon:3194;Parent=MsG0380016899.01.T01
Chr3 exon 89186605 89186735 89186605 ID=MsG0380016899.01.T01:exon:3195;Parent=MsG0380016899.01.T01
Chr3 exon 89186839 89187042 89186839 ID=MsG0380016899.01.T01:exon:3196;Parent=MsG0380016899.01.T01
Chr3 exon 89187411 89187534 89187411 ID=MsG0380016899.01.T01:exon:3197;Parent=MsG0380016899.01.T01
Chr3 exon 89187636 89187838 89187636 ID=MsG0380016899.01.T01:exon:3198;Parent=MsG0380016899.01.T01
Chr3 exon 89188391 89188943 89188391 ID=MsG0380016899.01.T01:exon:3199;Parent=MsG0380016899.01.T01
Chr3 CDS 89185937 89186400 89185937 ID=MsG0380016899.01.T01:cds;Parent=MsG0380016899.01.T01
Chr3 CDS 89186605 89186735 89186605 ID=MsG0380016899.01.T01:cds;Parent=MsG0380016899.01.T01
Chr3 CDS 89186839 89187042 89186839 ID=MsG0380016899.01.T01:cds;Parent=MsG0380016899.01.T01
Chr3 CDS 89187411 89187534 89187411 ID=MsG0380016899.01.T01:cds;Parent=MsG0380016899.01.T01
Chr3 CDS 89187636 89187838 89187636 ID=MsG0380016899.01.T01:cds;Parent=MsG0380016899.01.T01
Chr3 CDS 89188391 89188497 89188391 ID=MsG0380016899.01.T01:cds;Parent=MsG0380016899.01.T01
Chr3 three_prime_UTR 89188498 89188943 89188498 ID=MsG0380016899.01.T01:three_prime_utr;Parent=MsG0380016899.01.T01
Gene Sequence

>MsG0380016899.01.T01

ATGGCTGAGGAATCTCCAAAGATAGCCACAACTCAAGAGGCAGTGCCTGTTGCTGAGGAGGAGCAAGTGGTGGTCACTCAAAAAACAGAATCCACTGTTCCAGCTGACAAAGAATCTGATGAGCCCAAGCCCAACCCAGAGCCCGAGAAAAAGCCCGTTGAAAACAACACTGCTGAGACCGAGGAGGTATCAAAGCCCAGTGGTGATGAAAAAATTCCAGAGTCTGGTTCGTTCAAGGAAGAGAGCACTATTGTTGGTGAGCTACCTGAAGCTGAGAAGAAAGCACTTACAGAGCTGAAACAGCTTATTCAAGAAGCACTTAACAAACATGAATTCTCTGCACCACCTTCAACTACTCCAAGCCCAGTTAAAGAACAAAAGCCCGAGCCCACACCAGAAGCAGAGCAGAATCACAACCACCTGCTGAAGAGACCAACAAGAAAGATGAACAGAACAATGAACAGTTCCAGAGGAACCAAAGGTGGTGGAAGCTTCTTCACCGGAACAACAACAACAACAACCAGAAGAGGTTTCAATATGGGGGATCCACTTCTTGCAGACGATAGAACTGACGTGATTCTGTTAAAGTTTCTACGTGATGAATATTTAGAGAAAACTGTTTACATGCATGGATATGACAAAGAAGGACACCCTGTTTGTTATAACATTTATGGAGAGTTTGATAACAAGGAGGTTTATAAGAAAACATTTTCTGATGAAGAGAAGAGAGAAAAGTTCTTGAAATGGAGAATTCTGGTCTTGGAGAAGAGTATTAGGAAGTTGGATTTTACCCCTGGTGGTGTTTATCAATGTGCCATGGTGGTACTTAGCTGTGAACAGAATGATAAGTCCTTTTCTTACACAAAGAACAAAAAGCAAGTTTGTATTTGCTGGACTTCCAAATCAGCTGAGACTCTTCTAAGTTACATAGCTCCTGAGCAACTTTCAGTCAAATATGGTGGACTAAGCAAAGATGGTGAATTTGGAATTACTGATGCTGTTACAGAAATTACAGTGAGGCCTGCGGCAAAACACACCGTGGAATTTCCAGTTACTGAGGTGAATTTGGTTGCTTTTTTTTTTACCTTTCTGTGTTTTGTCAGGATTGATTGGTTTTTTAGATTGAAACTGTCTACTCTCATGGGAGCTAAGAGTAATTGGTGGGACATAAGCTATGGTGCAGAGTTTGTACCAAGTTCAGAAGGAAGCTACACTGTTATAATCCAAGACTAG
Protein sequence

>MsG0380016899.01.T01

MAEESPKIATTQEAVPVAEEEQVVVTQKTESTVPADKESDEPKPNPEPEKKPVENNTAETEEVSKPSGDEKIPESGSFKEESTIVGELPEAEKKALTELKQLIQEALNKHEFSAPPSTTPSPVKEQKPEPTPEAEQNHNHLLKRPTRKMNRTMNSSRGTKGGGSFFTGTTTTTTRRGFNMGDPLLADDRTDVILLKFLRDEYLEKTVYMHGYDKEGHPVCYNIYGEFDNKEVYKKTFSDEEKREKFLKWRILVLEKSIRKLDFTPGGVYQCAMVVLSCEQNDKSFSYTKNKKQVCICWTSKSAETLLSYIAPEQLSVKYGGLSKDGEFGITDAVTEITVRPAAKHTVEFPVTEVNLVAFFFTFLCFVRIDWFFRLKLSTLMGAKSNWWDISYGAEFVPSSEGSYTVIIQD*